Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002199
(601 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_584177.3| PREDICTED: ribosomal protein S14-like, partial ... 271 4e-73
Alignment gi|XP_002694606.1| PREDICTED: ribosomal protein S14-like [Bos t... 263 6e-71
Alignment gi|NP_001071298.1| 40S ribosomal protein S14 [Bos taurus]. 258 3e-69
>ref|XP_584177.3| PREDICTED: ribosomal protein S14-like, partial [Bos taurus].
Length = 191
Score = 271 bits (692), Expect = 4e-73
Identities = 139/153 (90%), Positives = 145/153 (94%)
Frame = +2
Query: 5 ALSGGGV*RRRAEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDL 184
+LSGG V RRRAEMAPRKGKEKKEE+VISLGPQVAEGENVFGVCHIFA+FNDTFVHVTDL
Sbjct: 28 SLSGGRVWRRRAEMAPRKGKEKKEERVISLGPQVAEGENVFGVCHIFAAFNDTFVHVTDL 87
Query: 185 SGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKT 364
SGKETICRVTGGMKVKADRDESSPYAA+LAAQDV QR KELG+TALHIKL+A GGNRTKT
Sbjct: 88 SGKETICRVTGGMKVKADRDESSPYAAVLAAQDVDQRGKELGMTALHIKLQARGGNRTKT 147
Query: 365 PGPGAQSALRALARSGMKIGRIEDVTPIPSDST 463
PGPGAQSALRAL SGMKIGRIEDVTPI SDST
Sbjct: 148 PGPGAQSALRALDCSGMKIGRIEDVTPILSDST 180
>ref|XP_002694606.1| PREDICTED: ribosomal protein S14-like [Bos taurus].
Length = 168
Score = 263 bits (673), Expect = 6e-71
Identities = 134/145 (92%), Positives = 139/145 (95%)
Frame = +2
Query: 29 RRRAEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICR 208
RRRAEMAPRKGKEKKEE+VISLGPQVAEGENVFGVCHIFA+FNDTFVHVTDLSGKETICR
Sbjct: 13 RRRAEMAPRKGKEKKEERVISLGPQVAEGENVFGVCHIFAAFNDTFVHVTDLSGKETICR 72
Query: 209 VTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSA 388
VTGGMKVKADRDESSPYAA+LAAQDV QR KELG+TALHIKL+A GGNRTKTPGPGAQSA
Sbjct: 73 VTGGMKVKADRDESSPYAAVLAAQDVDQRGKELGMTALHIKLQARGGNRTKTPGPGAQSA 132
Query: 389 LRALARSGMKIGRIEDVTPIPSDST 463
LRAL SGMKIGRIEDVTPI SDST
Sbjct: 133 LRALDCSGMKIGRIEDVTPILSDST 157
>ref|NP_001071298.1| 40S ribosomal protein S14 [Bos taurus].
Length = 157
Score = 258 bits (658), Expect = 3e-69
Identities = 129/129 (100%), Positives = 129/129 (100%)
Frame = +2
Query: 44 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 223
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 224 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 403
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 404 RSGMKIGRI 430
RSGMKIGRI
Sbjct: 121 RSGMKIGRI 129
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 21,622,606
Number of extensions: 710641
Number of successful extensions: 4296
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4255
Number of HSP's successfully gapped: 3
Length of query: 200
Length of database: 17,681,374
Length adjustment: 97
Effective length of query: 103
Effective length of database: 14,471,838
Effective search space: 1490599314
Effective search space used: 1490599314
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002199
(601 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867612.1| PREDICTED: similar to ribosomal protein S14 iso... 280 9e-76
Alignment gi|XP_867602.1| PREDICTED: similar to ribosomal protein S14 iso... 280 9e-76
Alignment gi|XP_536466.1| PREDICTED: similar to ribosomal protein S14 iso... 280 9e-76
Alignment gi|XP_853559.1| PREDICTED: similar to ribosomal protein S14 iso... 280 9e-76
>ref|XP_867612.1| PREDICTED: similar to ribosomal protein S14 isoform 4 [Canis
familiaris].
Length = 151
Score = 280 bits (715), Expect = 9e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +2
Query: 44 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 223
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 224 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 403
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 404 RSGMKIGRIEDVTPIPSDST 463
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|XP_867602.1| PREDICTED: similar to ribosomal protein S14 isoform 3 [Canis
familiaris].
Length = 151
Score = 280 bits (715), Expect = 9e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +2
Query: 44 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 223
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 224 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 403
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 404 RSGMKIGRIEDVTPIPSDST 463
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|XP_536466.1| PREDICTED: similar to ribosomal protein S14 isoform 1 [Canis
familiaris].
Length = 151
Score = 280 bits (715), Expect = 9e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +2
Query: 44 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 223
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 224 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 403
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 404 RSGMKIGRIEDVTPIPSDST 463
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|XP_853559.1| PREDICTED: similar to ribosomal protein S14 isoform 2 [Canis
familiaris].
Length = 151
Score = 280 bits (715), Expect = 9e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +2
Query: 44 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 223
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 224 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 403
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 404 RSGMKIGRIEDVTPIPSDST 463
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 22,398,275
Number of extensions: 691232
Number of successful extensions: 4366
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4289
Number of HSP's successfully gapped: 4
Length of query: 200
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 102
Effective length of database: 15,607,576
Effective search space: 1591972752
Effective search space used: 1591972752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002199
(601 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020242.1| 40S ribosomal protein S14 [Homo sapiens]. 280 9e-76
Alignment gi|NP_001020241.1| 40S ribosomal protein S14 [Homo sapiens]. 280 9e-76
Alignment gi|NP_005608.1| 40S ribosomal protein S14 [Homo sapiens]. 280 9e-76
>ref|NP_001020242.1| 40S ribosomal protein S14 [Homo sapiens].
Length = 151
Score = 280 bits (715), Expect = 9e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +2
Query: 44 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 223
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 224 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 403
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 404 RSGMKIGRIEDVTPIPSDST 463
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|NP_001020241.1| 40S ribosomal protein S14 [Homo sapiens].
Length = 151
Score = 280 bits (715), Expect = 9e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +2
Query: 44 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 223
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 224 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 403
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 404 RSGMKIGRIEDVTPIPSDST 463
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|NP_005608.1| 40S ribosomal protein S14 [Homo sapiens].
Length = 151
Score = 280 bits (715), Expect = 9e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +2
Query: 44 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 223
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 224 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 403
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 404 RSGMKIGRIEDVTPIPSDST 463
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 21,800,287
Number of extensions: 662668
Number of successful extensions: 4138
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4066
Number of HSP's successfully gapped: 3
Length of query: 200
Length of database: 18,297,164
Length adjustment: 97
Effective length of query: 103
Effective length of database: 15,099,656
Effective search space: 1555264568
Effective search space used: 1555264568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002199
(601 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065625.2| 40S ribosomal protein S14 [Mus musculus]. 280 7e-76
>ref|NP_065625.2| 40S ribosomal protein S14 [Mus musculus].
Length = 151
Score = 280 bits (715), Expect = 7e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +2
Query: 44 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 223
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 224 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 403
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 404 RSGMKIGRIEDVTPIPSDST 463
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 18,251,737
Number of extensions: 539250
Number of successful extensions: 3146
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3089
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 15,617,559
Length adjustment: 96
Effective length of query: 104
Effective length of database: 12,734,103
Effective search space: 1324346712
Effective search space used: 1324346712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002199
(601 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 14,431,105
Number of extensions: 529731
Number of successful extensions: 2852
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2803
Number of HSP's successfully gapped: 0
Length of query: 200
Length of database: 11,343,932
Length adjustment: 94
Effective length of query: 106
Effective length of database: 9,003,614
Effective search space: 954383084
Effective search space used: 954383084
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002199
(601 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 200 6e-49
>Sscrofa_Chr08
|| Length = 148491826
Score = 200 bits (101), Expect = 6e-49
Identities = 382/472 (80%), Gaps = 4/472 (0%)
Strand = Plus / Minus
Query: 8 ctttccggtggcggagtctgaaggcgacgcgcagaaatggcaccgcgcaaggggaaggag 67
|||||| ||||||||||||| ||| ||| | ||||||||||||| | |||| ||| ||
Sbjct: 135039705 ctttccagtggcggagtctggaggagactcacagaaatggcacctcacaagaagaaagaa 135039646
Query: 68 aagaaggaggagcaggtcatcagcctcggcccgcaggtggctgaaggggaaaacgtgttc 127
|||| ||| || |||||||||||||| || || ||||||||||||| |||||| | ||
Sbjct: 135039645 aagagggaagaacaggtcatcagccttggtcctcaggtggctgaagtggaaaatgcattt 135039586
Query: 128 ggcgtgtgtcacatcttcgcgtctttcaatgacactttcgtccatgtcaccgatctctcg 187
|| |||||||||| || | || | || ||||| ||| ||||||||||| || |||||
Sbjct: 135039585 gg--tgtgtcacatattttcatcctccagtgacaattttgtccatgtcactgacctctct 135039528
Query: 188 ggcaaggagaccatctgtcgcgtgacgggcgggatgaaggtgaaggccgaccgggatgag 247
|||||||| ||||||||| | ||| | || ||||||||||||||||| || | ||||||
Sbjct: 135039527 ggcaaggaaaccatctgttgtgtggctggtgggatgaaggtgaaggctgatggagatgag 135039468
Query: 248 tcctctccgtacgccgctatgctggctgcccaggacgtggcccagcgctgcaaggagctg 307
|| ||||| || | || ||| |||| ||||||| || || ||| | |||||||| |
Sbjct: 135039467 tcatctccatatgttgccatgttggccacccaggatgtagctcagaggcacaaggagcgg 135039408
Query: 308 ggcatcactgccctccacatcaagctccgggccacgggcgggaaccggaccaagacccct 367
| | ||||||||||||||||||| ||| |||| || || || || ||||||||||||||
Sbjct: 135039407 gacctcactgccctccacatcaaactcagggcaacaggaggacacaggaccaagacccct 135039348
Query: 368 gggccaggtgcccagtcagccctcagagccctcgcccgctcgggaatgaagattgggcgg 427
|| | ||| ||||||| |||||||||||||||| | | ||| |||||||||| |||||
Sbjct: 135039347 ggactaggggcccagtgagccctcagagccctcactcactcaggaatgaagactgggc-t 135039289
Query: 428 attgaggacgtcacccccatcccctccgacagcacccgcaggaaagggggtc 479
| |||||| |||| |||||||||||| ||||||||| ||||||| |||||||
Sbjct: 135039288 actgaggatgtca-ccccatcccctctgacagcacctgcaggaaggggggtc 135039238
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 10,847,295
Number of extensions: 494
Number of successful extensions: 494
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 3
Length of query: 601
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 580
Effective length of database: 2,808,413,156
Effective search space: 1628879630480
Effective search space used: 1628879630480
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)