Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002203
(1119 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032677.1| UBX domain-containing protein 1 [Bos taurus]. 362 e-100
Alignment gi|NP_001193057.1| ubiquitin-associated and SH3 domain-containi... 62 7e-10
Alignment gi|XP_002693080.1| PREDICTED: KIAA1959 protein-like [Bos taurus]. 62 7e-10
Alignment gi|XP_002687910.1| PREDICTED: ubiquitin specific peptidase 5 (i... 60 3e-09
Alignment gi|XP_002687909.1| PREDICTED: ubiquitin specific peptidase 5 (i... 60 3e-09
Alignment gi|NP_001178985.1| ubiquitin carboxyl-terminal hydrolase 5 [Bos... 59 6e-09
Alignment gi|XP_002704265.1| PREDICTED: ubiquitin specific peptidase 5 (i... 59 6e-09
Alignment gi|NP_001030491.2| UBX domain-containing protein 4 [Bos taurus]. 56 5e-08
Alignment gi|NP_001069749.1| ubiquitin-associated domain-containing prote... 55 9e-08
Alignment gi|NP_001178195.1| ubiquitin carboxyl-terminal hydrolase 13 [Bo... 52 1e-06
>ref|NP_001032677.1| UBX domain-containing protein 1 [Bos taurus].
Length = 297
Score = 362 bits (928), Expect = e-100
Identities = 200/297 (67%), Positives = 207/297 (69%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATPLGHVL 277
MAELTALESLIEMGFP+GRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATPLGHVL
Sbjct: 1 MAELTALESLIEMGFPKGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATPLGHVL 60
Query: 278 GRXXXXXXXXXXXXXXXAAGEGKPPLSEEERQEQTKRMXXXXXXXXXXXXXXXXXXXXXX 457
GR A GEGKP L+EEERQEQTKRM
Sbjct: 61 GREPTPSEQGGPKGPGSAVGEGKPVLTEEERQEQTKRMLELVAQKQREREEREEREALER 120
Query: 458 XXXXXXXXXXXSAARQRLQXXXXXXXXXXXXXXXXXXXXXXXXVREKIERDKAERAKKYG 637
+AARQRLQ VREKIERDKAERAKKYG
Sbjct: 121 ERQRRRQGQELTAARQRLQEDEMRRAAEERRREKAEELEARQRVREKIERDKAERAKKYG 180
Query: 638 GSVGSQXXXXXXXXXXXXXASPSQEPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAV 817
G+VGSQ +SPS+EPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAV
Sbjct: 181 GNVGSQPSPPATEPGPVP-SSPSREPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAV 239
Query: 818 RLYVELHRGEELGGGQDPVQLLSGFPRRAFSEADMERPLQELGLVPSAVLIVARNVP 988
RLYVELHRGEELGG QDPVQLLSGFPRRAFSEADMERPLQELGLVPSAVLIVA+ P
Sbjct: 240 RLYVELHRGEELGGAQDPVQLLSGFPRRAFSEADMERPLQELGLVPSAVLIVAKKCP 296
>ref|NP_001193057.1| ubiquitin-associated and SH3 domain-containing protein B [Bos
taurus].
Length = 649
Score = 62.4 bits (150), Expect = 7e-10
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +2
Query: 110 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
+AL+ L+ MGFPR RA+KALA TG + ++AA DWL H DP +D+PL
Sbjct: 39 SALDVLLSMGFPRARAQKALASTGGRSVQAACDWLFSHVGDPFLDDPL 86
>ref|XP_002693080.1| PREDICTED: KIAA1959 protein-like [Bos taurus].
Length = 649
Score = 62.4 bits (150), Expect = 7e-10
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +2
Query: 110 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
+AL+ L+ MGFPR RA+KALA TG + ++AA DWL H DP +D+PL
Sbjct: 39 SALDVLLSMGFPRARAQKALASTGGRSVQAACDWLFSHVGDPFLDDPL 86
>ref|XP_002687910.1| PREDICTED: ubiquitin specific peptidase 5 (isopeptidase T) isoform
2 [Bos taurus].
Length = 835
Score = 60.5 bits (145), Expect = 3e-09
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
M + + + L+EMGFP KA+ TGN G EAAM+W+M H DDPD PL P
Sbjct: 631 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILP 685
>ref|XP_002687909.1| PREDICTED: ubiquitin specific peptidase 5 (isopeptidase T) isoform
1 [Bos taurus].
Length = 858
Score = 60.5 bits (145), Expect = 3e-09
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
M + + + L+EMGFP KA+ TGN G EAAM+W+M H DDPD PL P
Sbjct: 654 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILP 708
>ref|NP_001178985.1| ubiquitin carboxyl-terminal hydrolase 5 [Bos taurus].
Length = 858
Score = 59.3 bits (142), Expect = 6e-09
Identities = 26/55 (47%), Positives = 34/55 (61%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
M + + + L+EMGFP KA+ TGN G +AAM+W+M H DDPD PL P
Sbjct: 654 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGADAAMNWVMSHMDDPDFANPLILP 708
>ref|XP_002704265.1| PREDICTED: ubiquitin specific peptidase 5 (isopeptidase T) [Bos
taurus].
Length = 835
Score = 59.3 bits (142), Expect = 6e-09
Identities = 26/55 (47%), Positives = 34/55 (61%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
M + + + L+EMGFP KA+ TGN G +AAM+W+M H DDPD PL P
Sbjct: 631 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGADAAMNWVMSHMDDPDFANPLILP 685
>ref|NP_001030491.2| UBX domain-containing protein 4 [Bos taurus].
Length = 508
Score = 56.2 bits (134), Expect = 5e-08
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Frame = +2
Query: 587 VREKIERDKAERAKKYGGSVGS-QXXXXXXXXXXXXXASPSQEPPTKREYDQCRIQVRLP 763
++++I D+AERA ++ + + +E TK RIQ RLP
Sbjct: 268 IKQQIALDRAERAARFAKTKEEVEAAKAAALLAKQAEMEIKRETSTKERSTVARIQFRLP 327
Query: 764 DGTSLTQTFRAREQLAAVRLYVELHRGEELGGGQDPVQLLSGFPRRAFSEADMERPLQEL 943
DG+S T F + L R + + +G L + FPRR F++ D ++ L +L
Sbjct: 328 DGSSFTNQFPSDAPLEEARQFA----AQTVGNTYGNFSLATMFPRREFTKEDYKKKLLDL 383
Query: 944 GLVPSAVLIVARNVPAERP 1000
L PSA +++ +PA RP
Sbjct: 384 ELAPSASVVL---LPAGRP 399
>ref|NP_001069749.1| ubiquitin-associated domain-containing protein 1 [Bos taurus].
Length = 402
Score = 55.5 bits (132), Expect = 9e-08
Identities = 27/50 (54%), Positives = 32/50 (64%)
Frame = +2
Query: 113 ALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
AL L EMGFP RA KAL L + + AM+WL+EH DDP +D PL P
Sbjct: 196 ALRQLTEMGFPETRAAKALRLN-HMSVPQAMEWLIEHADDPTIDTPLPGP 244
>ref|NP_001178195.1| ubiquitin carboxyl-terminal hydrolase 13 [Bos taurus].
Length = 863
Score = 51.6 bits (122), Expect = 1e-06
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +2
Query: 110 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
+++ L EMGFP KA+ TGN G E A +W++ H ++PD EPL P
Sbjct: 656 SSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIVVHMEEPDFAEPLTMP 706
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,330,527
Number of extensions: 1120471
Number of successful extensions: 6028
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 5973
Number of HSP's successfully gapped: 11
Length of query: 373
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,240,222
Effective search space: 3830619718
Effective search space used: 3830619718
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002203
(1119 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533263.2| PREDICTED: similar to DNA segment, Chr 19, ERAT... 351 6e-99
Alignment gi|XP_543845.2| PREDICTED: similar to Ubiquitin carboxyl-termin... 60 3e-09
Alignment gi|XP_867414.1| PREDICTED: similar to Ubiquitin isopeptidase T ... 60 3e-09
Alignment gi|XP_867393.1| PREDICTED: similar to Ubiquitin isopeptidase T ... 60 3e-09
Alignment gi|XP_856681.1| PREDICTED: similar to UBX domain containing 2 i... 54 2e-07
Alignment gi|XP_533337.2| PREDICTED: similar to UBX domain containing 2 i... 54 2e-07
Alignment gi|XP_548377.2| PREDICTED: similar to ubiquitin associated doma... 54 4e-07
Alignment gi|XP_848990.1| PREDICTED: similar to ubiquitin associated doma... 54 4e-07
Alignment gi|XP_535813.2| PREDICTED: similar to Ubiquitin carboxyl-termin... 52 1e-06
Alignment gi|XP_544904.2| PREDICTED: similar to ubiquitin associated and ... 51 2e-06
>ref|XP_533263.2| PREDICTED: similar to DNA segment, Chr 19, ERATO Doi 721, expressed
[Canis familiaris].
Length = 396
Score = 351 bits (901), Expect(2) = 6e-99
Identities = 196/298 (65%), Positives = 203/298 (68%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATPLGHVL 277
MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHED+PDVDEPL TPLG L
Sbjct: 101 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDEPDVDEPLPTPLGRAL 160
Query: 278 GRXXXXXXXXXXXXXXXAAGEGKPPLSEEERQEQTKRMXXXXXXXXXXXXXXXXXXXXXX 457
GR GEGKP LSEEERQEQTKRM
Sbjct: 161 GREPTVSEQSGPEGTGSTGGEGKPVLSEEERQEQTKRMLELVAQKQREREEREEREALER 220
Query: 458 XXXXXXXXXXXSAARQRLQXXXXXXXXXXXXXXXXXXXXXXXXVREKIERDKAERAKKYG 637
SAARQRLQ VREKIERDKAERAKKYG
Sbjct: 221 ERQRRKQGQELSAARQRLQEDEMRRAAEERRREKAEELAARQRVREKIERDKAERAKKYG 280
Query: 638 GSVGSQXXXXXXXXXXXXXASPSQEPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAV 817
G+VGS+ +SPSQEPP+KREYDQCRIQVRLPDGTSLTQTFRAREQLAAV
Sbjct: 281 GNVGSRPSPPTEPGPVP--SSPSQEPPSKREYDQCRIQVRLPDGTSLTQTFRAREQLAAV 338
Query: 818 RLYVELHRGEELGGGQDPVQLLSGFPRRAFSEADMERPLQELGLVPSAVLIVARNVPA 991
RLYVELHRGEE GG QDPVQLLSGFPRRAFSEADMERPLQELGLVPSAVLIVA+ P+
Sbjct: 339 RLYVELHRGEEPGGDQDPVQLLSGFPRRAFSEADMERPLQELGLVPSAVLIVAKKCPS 396
Score = 29.3 bits (64), Expect(2) = 6e-99
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +3
Query: 9 GHFRFPRAFFSSVS 50
GHFRFP AFF SVS
Sbjct: 71 GHFRFPSAFFPSVS 84
>ref|XP_543845.2| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 5
(Ubiquitin thiolesterase 5) (Ubiquitin-specific
processing protease 5) (Deubiquitinating enzyme 5)
(Isopeptidase T) isoform 1 [Canis familiaris].
Length = 858
Score = 60.5 bits (145), Expect = 3e-09
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
M + + + L+EMGFP KA+ TGN G EAAM+W+M H DDPD PL P
Sbjct: 654 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILP 708
>ref|XP_867414.1| PREDICTED: similar to Ubiquitin isopeptidase T isoform 4 [Canis
familiaris].
Length = 810
Score = 60.5 bits (145), Expect = 3e-09
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
M + + + L+EMGFP KA+ TGN G EAAM+W+M H DDPD PL P
Sbjct: 606 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILP 660
>ref|XP_867393.1| PREDICTED: similar to Ubiquitin isopeptidase T isoform 2 [Canis
familiaris].
Length = 835
Score = 60.5 bits (145), Expect = 3e-09
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
M + + + L+EMGFP KA+ TGN G EAAM+W+M H DDPD PL P
Sbjct: 631 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILP 685
>ref|XP_856681.1| PREDICTED: similar to UBX domain containing 2 isoform 3 [Canis
familiaris].
Length = 460
Score = 54.3 bits (129), Expect = 2e-07
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Frame = +2
Query: 587 VREKIERDKAERAKKYGGSVGS-QXXXXXXXXXXXXXASPSQEPPTKREYDQCRIQVRLP 763
++++I D+AERA ++ + + ++ T+ RIQ RLP
Sbjct: 221 IKQQIALDRAERAARFAKTKEEVEAAKAAALQAKQAEMEVKRDSSTRERSTVARIQFRLP 280
Query: 764 DGTSLTQTFRAREQLAAVRLYVELHRGEELGGGQDPVQLLSGFPRRAFSEADMERPLQEL 943
DG+S T F + L R + G G L + FPRR F++ D ++ L +L
Sbjct: 281 DGSSFTNQFPSDAPLEEARQFAAQTVGNTYGN----FSLATMFPRREFTKEDYKKKLLDL 336
Query: 944 GLVPSAVLIVARNVPAERP 1000
L PSA +++ +PA RP
Sbjct: 337 ELAPSASVVL---LPAGRP 352
>ref|XP_533337.2| PREDICTED: similar to UBX domain containing 2 isoform 1 [Canis
familiaris].
Length = 472
Score = 54.3 bits (129), Expect = 2e-07
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Frame = +2
Query: 587 VREKIERDKAERAKKYGGSVGS-QXXXXXXXXXXXXXASPSQEPPTKREYDQCRIQVRLP 763
++++I D+AERA ++ + + ++ T+ RIQ RLP
Sbjct: 233 IKQQIALDRAERAARFAKTKEEVEAAKAAALQAKQAEMEVKRDSSTRERSTVARIQFRLP 292
Query: 764 DGTSLTQTFRAREQLAAVRLYVELHRGEELGGGQDPVQLLSGFPRRAFSEADMERPLQEL 943
DG+S T F + L R + G G L + FPRR F++ D ++ L +L
Sbjct: 293 DGSSFTNQFPSDAPLEEARQFAAQTVGNTYGN----FSLATMFPRREFTKEDYKKKLLDL 348
Query: 944 GLVPSAVLIVARNVPAERP 1000
L PSA +++ +PA RP
Sbjct: 349 ELAPSASVVL---LPAGRP 364
>ref|XP_548377.2| PREDICTED: similar to ubiquitin associated domain containing 1
isoform 1 [Canis familiaris].
Length = 373
Score = 53.5 bits (127), Expect = 4e-07
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +2
Query: 113 ALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
AL L EMGFP RA KAL L + + AM+WL+EH +DP +D PL
Sbjct: 158 ALRQLTEMGFPESRAAKALRLN-HMSVPQAMEWLIEHAEDPTIDSPL 203
>ref|XP_848990.1| PREDICTED: similar to ubiquitin associated domain containing 1
isoform 2 [Canis familiaris].
Length = 439
Score = 53.5 bits (127), Expect = 4e-07
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +2
Query: 113 ALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
AL L EMGFP RA KAL L + + AM+WL+EH +DP +D PL
Sbjct: 198 ALRQLTEMGFPESRAAKALRLN-HMSVPQAMEWLIEHAEDPTIDSPL 243
>ref|XP_535813.2| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 13
(Ubiquitin thiolesterase 13) (Ubiquitin-specific
processing protease 13) (Deubiquitinating enzyme 13)
(Isopeptidase T-3) (ISOT-3) [Canis familiaris].
Length = 863
Score = 51.6 bits (122), Expect = 1e-06
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +2
Query: 110 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
+++ L EMGFP KA+ TGN G E A +W++ H ++PD EPL P
Sbjct: 656 SSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMP 706
>ref|XP_544904.2| PREDICTED: similar to ubiquitin associated and SH3 domain
containing, A short form [Canis familiaris].
Length = 624
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +2
Query: 116 LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
L++L+ MGFP A KALA TG + E A DWL H +DP +D+P+
Sbjct: 25 LDTLLGMGFPAHTALKALAATGRKTAEEASDWLRCHRNDPSLDDPI 70
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,067,731
Number of extensions: 1139426
Number of successful extensions: 6258
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6210
Number of HSP's successfully gapped: 11
Length of query: 373
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 269
Effective length of database: 15,407,560
Effective search space: 4144633640
Effective search space used: 4144633640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002203
(1119 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056937.2| UBX domain-containing protein 1 [Homo sapiens]. 351 8e-97
Alignment gi|NP_116262.2| ubiquitin-associated and SH3 domain-containing ... 62 7e-10
Alignment gi|NP_003472.2| ubiquitin carboxyl-terminal hydrolase 5 isoform... 60 3e-09
Alignment gi|NP_001092006.1| ubiquitin carboxyl-terminal hydrolase 5 isof... 60 3e-09
Alignment gi|NP_057256.2| ubiquitin-associated domain-containing protein ... 53 4e-07
Alignment gi|NP_055422.1| UBX domain-containing protein 4 [Homo sapiens]. 53 6e-07
Alignment gi|NP_003931.2| ubiquitin carboxyl-terminal hydrolase 13 [Homo ... 52 1e-06
Alignment gi|NP_001230396.1| ubiquitin-associated and SH3 domain-containi... 49 6e-06
Alignment gi|NP_001001895.1| ubiquitin-associated and SH3 domain-containi... 49 6e-06
Alignment gi|NP_061834.1| ubiquitin-associated and SH3 domain-containing ... 49 6e-06
>ref|NP_056937.2| UBX domain-containing protein 1 [Homo sapiens].
Length = 312
Score = 351 bits (900), Expect = 8e-97
Identities = 194/284 (68%), Positives = 197/284 (69%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATPLGHVL 277
MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL TPLGH+L
Sbjct: 1 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPLGHIL 60
Query: 278 GRXXXXXXXXXXXXXXXAAGEGKPPLSEEERQEQTKRMXXXXXXXXXXXXXXXXXXXXXX 457
GR AAGEGKP LSEEERQEQTKRM
Sbjct: 61 GREPTSSEQGGLEGSGSAAGEGKPALSEEERQEQTKRMLELVAQKQREREEREEREALER 120
Query: 458 XXXXXXXXXXXSAARQRLQXXXXXXXXXXXXXXXXXXXXXXXXVREKIERDKAERAKKYG 637
SAARQRLQ VREKIERDKAERAKKYG
Sbjct: 121 ERQRRRQGQELSAARQRLQEDEMRRAAEERRREKAEELAARQRVREKIERDKAERAKKYG 180
Query: 638 GSVGSQXXXXXXXXXXXXXASPSQEPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAV 817
GSVGSQ +SPSQEPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAV
Sbjct: 181 GSVGSQPPPVAPEPGPVP-SSPSQEPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAV 239
Query: 818 RLYVELHRGEELGGGQDPVQLLSGFPRRAFSEADMERPLQELGL 949
RLYVELHRGEELGGGQDPVQLLSGFPRRAFSEADMERPLQELG+
Sbjct: 240 RLYVELHRGEELGGGQDPVQLLSGFPRRAFSEADMERPLQELGM 283
>ref|NP_116262.2| ubiquitin-associated and SH3 domain-containing protein B [Homo
sapiens].
Length = 649
Score = 62.4 bits (150), Expect = 7e-10
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +2
Query: 110 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
+AL+ L+ MGFPR RA+KALA TG + ++AA DWL H DP +D+PL
Sbjct: 39 SALDVLLSMGFPRARAQKALASTGGRSVQAACDWLFSHVGDPFLDDPL 86
>ref|NP_003472.2| ubiquitin carboxyl-terminal hydrolase 5 isoform 2 [Homo sapiens].
Length = 835
Score = 60.5 bits (145), Expect = 3e-09
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
M + + + L+EMGFP KA+ TGN G EAAM+W+M H DDPD PL P
Sbjct: 631 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILP 685
>ref|NP_001092006.1| ubiquitin carboxyl-terminal hydrolase 5 isoform 1 [Homo sapiens].
Length = 858
Score = 60.5 bits (145), Expect = 3e-09
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
M + + + L+EMGFP KA+ TGN G EAAM+W+M H DDPD PL P
Sbjct: 654 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILP 708
>ref|NP_057256.2| ubiquitin-associated domain-containing protein 1 [Homo sapiens].
Length = 405
Score = 53.1 bits (126), Expect = 4e-07
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +2
Query: 113 ALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
AL L EMGFP RA KAL L + + AM+WL+EH +DP +D PL
Sbjct: 196 ALRQLTEMGFPENRATKALQLN-HMSVPQAMEWLIEHAEDPTIDTPL 241
>ref|NP_055422.1| UBX domain-containing protein 4 [Homo sapiens].
Length = 508
Score = 52.8 bits (125), Expect = 6e-07
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Frame = +2
Query: 587 VREKIERDKAERAKKYGGSVGS-QXXXXXXXXXXXXXASPSQEPPTKREYDQCRIQVRLP 763
++++I D+AERA ++ + + +E + RIQ RLP
Sbjct: 268 IKQQIALDRAERAARFAKTKEEVEAAKAAALLAKQAEMEVKRESYARERSTVARIQFRLP 327
Query: 764 DGTSLTQTFRAREQLAAVRLYVELHRGEELGGGQDPVQLLSGFPRRAFSEADMERPLQEL 943
DG+S T F + L R + G G L + FPRR F++ D ++ L +L
Sbjct: 328 DGSSFTNQFPSDAPLEEARQFAAQTVGNTYGN----FSLATMFPRREFTKEDYKKKLLDL 383
Query: 944 GLVPSAVLIVARNVPAERP 1000
L PSA +++ +PA RP
Sbjct: 384 ELAPSASVVL---LPAGRP 399
>ref|NP_003931.2| ubiquitin carboxyl-terminal hydrolase 13 [Homo sapiens].
Length = 863
Score = 51.6 bits (122), Expect = 1e-06
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +2
Query: 110 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
+++ L EMGFP KA+ TGN G E A +W++ H ++PD EPL P
Sbjct: 656 SSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMP 706
>ref|NP_001230396.1| ubiquitin-associated and SH3 domain-containing protein A isoform 3
[Homo sapiens].
Length = 526
Score = 49.3 bits (116), Expect = 6e-06
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +2
Query: 116 LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
LE L+ MGFP A KALA TG + E A+ WL +H +DP +D+P+
Sbjct: 25 LEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPI 70
>ref|NP_001001895.1| ubiquitin-associated and SH3 domain-containing protein A isoform 2
[Homo sapiens].
Length = 623
Score = 49.3 bits (116), Expect = 6e-06
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +2
Query: 116 LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
LE L+ MGFP A KALA TG + E A+ WL +H +DP +D+P+
Sbjct: 25 LEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPI 70
>ref|NP_061834.1| ubiquitin-associated and SH3 domain-containing protein A isoform 1
[Homo sapiens].
Length = 661
Score = 49.3 bits (116), Expect = 6e-06
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +2
Query: 116 LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
LE L+ MGFP A KALA TG + E A+ WL +H +DP +D+P+
Sbjct: 25 LEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPI 70
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,986,251
Number of extensions: 1092283
Number of successful extensions: 5671
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5614
Number of HSP's successfully gapped: 10
Length of query: 373
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,868,908
Effective search space: 3999736252
Effective search space used: 3999736252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002203
(1119 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666205.1| UBX domain-containing protein 1 [Mus musculus]. 350 1e-96
Alignment gi|NP_789830.1| ubiquitin-associated and SH3 domain-containing ... 62 6e-10
Alignment gi|NP_038728.1| ubiquitin carboxyl-terminal hydrolase 5 [Mus mu... 60 2e-09
Alignment gi|NP_080666.2| UBX domain-containing protein 4 [Mus musculus]. 58 1e-08
Alignment gi|NP_598596.2| ubiquitin-associated domain-containing protein ... 55 8e-08
Alignment gi|NP_001013042.1| ubiquitin carboxyl-terminal hydrolase 13 [Mu... 53 5e-07
Alignment gi|NP_808491.2| ubiquitin associated and SH3 domain containing,... 51 1e-06
>ref|NP_666205.1| UBX domain-containing protein 1 [Mus musculus].
Length = 297
Score = 350 bits (898), Expect = 1e-96
Identities = 196/298 (65%), Positives = 203/298 (68%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATPLGHVL 277
MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL TPL HVL
Sbjct: 1 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPLSHVL 60
Query: 278 GRXXXXXXXXXXXXXXXAAGEGKPPLSEEERQEQTKRMXXXXXXXXXXXXXXXXXXXXXX 457
GR AAGE +P L+EEERQEQTKRM
Sbjct: 61 GREPTPSEQVGPEGSGSAAGESRPILTEEERQEQTKRMLELVAQKQREREEREEREALER 120
Query: 458 XXXXXXXXXXXSAARQRLQXXXXXXXXXXXXXXXXXXXXXXXXVREKIERDKAERAKKYG 637
S ARQ+LQ VREKIERDKAERAKKYG
Sbjct: 121 EKQRRRQGQELSVARQKLQEDEMRRAAEERRREKAEELAARQRVREKIERDKAERAKKYG 180
Query: 638 GSVGSQXXXXXXXXXXXXXASPSQEPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAV 817
GSVGS+ +SPSQEPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAV
Sbjct: 181 GSVGSRSSPPATDPGPVP-SSPSQEPPTKREYDQCRIQVRLPDGTSLTQTFRAREQLAAV 239
Query: 818 RLYVELHRGEELGGGQDPVQLLSGFPRRAFSEADMERPLQELGLVPSAVLIVARNVPA 991
RLYVELHRGEE G QDPVQLLSGFPRRAFSEADMERPLQELGLVPSAVLIVA+ P+
Sbjct: 240 RLYVELHRGEEPGQDQDPVQLLSGFPRRAFSEADMERPLQELGLVPSAVLIVAKKCPS 297
>ref|NP_789830.1| ubiquitin-associated and SH3 domain-containing protein B [Mus
musculus].
Length = 638
Score = 62.4 bits (150), Expect = 6e-10
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +2
Query: 110 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
+AL+ L+ MGFPR RA+KALA TG + ++AA DWL H DP +D+PL
Sbjct: 28 SALDVLLSMGFPRARAQKALASTGGRSVQAACDWLFSHVGDPFLDDPL 75
>ref|NP_038728.1| ubiquitin carboxyl-terminal hydrolase 5 [Mus musculus].
Length = 858
Score = 60.5 bits (145), Expect = 2e-09
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
M + + + L+EMGFP KA+ TGN G EAAM+W+M H DDPD PL P
Sbjct: 654 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILP 708
>ref|NP_080666.2| UBX domain-containing protein 4 [Mus musculus].
Length = 506
Score = 58.2 bits (139), Expect = 1e-08
Identities = 40/138 (28%), Positives = 63/138 (45%)
Frame = +2
Query: 587 VREKIERDKAERAKKYGGSVGSQXXXXXXXXXXXXXASPSQEPPTKREYDQCRIQVRLPD 766
++++I D+AERA ++ + ++ +E + RIQ RLPD
Sbjct: 267 IKQQIALDRAERAARFAKTKEAEAAKAAALLTKQAGTEVKRESTARDRSTIARIQFRLPD 326
Query: 767 GTSLTQTFRAREQLAAVRLYVELHRGEELGGGQDPVQLLSGFPRRAFSEADMERPLQELG 946
G+S T F + L R + G G L + FPRR F+ D +R L +L
Sbjct: 327 GSSFTNQFPSDAPLEEARQFAAQTVGNTYGN----FSLATMFPRREFTREDYKRRLLDLE 382
Query: 947 LVPSAVLIVARNVPAERP 1000
L PSA +++ +PA RP
Sbjct: 383 LAPSASVVL---LPAGRP 397
>ref|NP_598596.2| ubiquitin-associated domain-containing protein 1 [Mus musculus].
Length = 409
Score = 55.5 bits (132), Expect = 8e-08
Identities = 26/48 (54%), Positives = 32/48 (66%)
Frame = +2
Query: 110 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
TAL L EMGFP RA KAL L + + AM+WL+EH +DP +D PL
Sbjct: 195 TALRQLTEMGFPESRASKALRLN-HMSVPQAMEWLIEHSEDPAIDTPL 241
>ref|NP_001013042.1| ubiquitin carboxyl-terminal hydrolase 13 [Mus musculus].
Length = 858
Score = 52.8 bits (125), Expect = 5e-07
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +2
Query: 110 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
+++ L EMGFP KA+ TGN G E A +W++ H ++PD EPLA P
Sbjct: 654 SSVMQLAEMGFPLEACRKAVYFTGNTGAEVAFNWIIVHMEEPDFAEPLAIP 704
>ref|NP_808491.2| ubiquitin associated and SH3 domain containing, A [Mus musculus].
Length = 624
Score = 51.2 bits (121), Expect = 1e-06
Identities = 24/46 (52%), Positives = 31/46 (67%)
Frame = +2
Query: 116 LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
L+ L+ MGFP A KALA TG + EAA DWL H +DP +D+P+
Sbjct: 25 LDPLLAMGFPTHTALKALAATGRKTAEAAADWLHGHCNDPSLDDPI 70
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,672,980
Number of extensions: 893974
Number of successful extensions: 4275
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4242
Number of HSP's successfully gapped: 7
Length of query: 373
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 270
Effective length of database: 12,523,851
Effective search space: 3381439770
Effective search space used: 3381439770
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002203
(1119 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353872.1| PREDICTED: UBX domain-containing protein 1-l... 394 e-110
Alignment gi|XP_003129993.1| PREDICTED: ubiquitin-associated and SH3 doma... 62 4e-10
Alignment gi|XP_003355644.1| PREDICTED: ubiquitin carboxyl-terminal hydro... 60 2e-09
Alignment gi|XP_001925819.3| PREDICTED: ubiquitin carboxyl-terminal hydro... 60 2e-09
Alignment gi|XP_003359023.1| PREDICTED: ubiquitin-associated and SH3 doma... 53 4e-07
>ref|XP_003353872.1| PREDICTED: UBX domain-containing protein 1-like [Sus scrofa].
Length = 330
Score = 394 bits (1012), Expect = e-110
Identities = 221/330 (66%), Positives = 224/330 (67%)
Frame = +2
Query: 2 QIRALPLPPGFLLXXXXXXXXXXXXXXXXXXXMAELTALESLIEMGFPRGRAEKALALTG 181
+IRALPLPPGFLL MAELTALESLIEMGFPRGRAEKALALTG
Sbjct: 2 EIRALPLPPGFLLVSVRGRAAAGPRGSGGGGVMAELTALESLIEMGFPRGRAEKALALTG 61
Query: 182 NQGIEAAMDWLMEHEDDPDVDEPLATPLGHVLGRXXXXXXXXXXXXXXXAAGEGKPPLSE 361
NQGIEAAMDWLMEHEDDPDVDEPLATPLGHVLGR AAGEGKPPLSE
Sbjct: 62 NQGIEAAMDWLMEHEDDPDVDEPLATPLGHVLGREPTPSEQSSPEGPGSAAGEGKPPLSE 121
Query: 362 EERQEQTKRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAARQRLQXXXXXXXXX 541
EERQEQTKRM SAARQRLQ
Sbjct: 122 EERQEQTKRMLELLAQKQREREEREEREALERERQRRRQGQELSAARQRLQEDEMRRAAE 181
Query: 542 XXXXXXXXXXXXXXXVREKIERDKAERAKKYGGSVGSQXXXXXXXXXXXXXASPSQEPPT 721
VREKIERDKAERAKKYGGSVGSQ ASPSQEPPT
Sbjct: 182 ERRREKAEELAARQRVREKIERDKAERAKKYGGSVGSQPPPPTTEPGPVP-ASPSQEPPT 240
Query: 722 KREYDQCRIQVRLPDGTSLTQTFRAREQLAAVRLYVELHRGEELGGGQDPVQLLSGFPRR 901
KREYDQCRIQVRLPDGTSLTQTFRAREQLAAVRLYVELHRGEELGGGQDPVQLLSGFPRR
Sbjct: 241 KREYDQCRIQVRLPDGTSLTQTFRAREQLAAVRLYVELHRGEELGGGQDPVQLLSGFPRR 300
Query: 902 AFSEADMERPLQELGLVPSAVLIVARNVPA 991
AFSEADMERPLQELGLVPSAVLIVA+ P+
Sbjct: 301 AFSEADMERPLQELGLVPSAVLIVAKKCPS 330
>ref|XP_003129993.1| PREDICTED: ubiquitin-associated and SH3 domain-containing protein B
[Sus scrofa].
Length = 649
Score = 62.4 bits (150), Expect = 4e-10
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +2
Query: 110 TALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
+AL+ L+ MGFPR RA+KALA TG + ++AA DWL H DP +D+PL
Sbjct: 39 SALDVLLSMGFPRARAQKALASTGGRSVQAACDWLFSHVGDPFLDDPL 86
>ref|XP_003355644.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform 2 [Sus
scrofa].
Length = 858
Score = 60.5 bits (145), Expect = 2e-09
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
M + + + L+EMGFP KA+ TGN G EAAM+W+M H DDPD PL P
Sbjct: 654 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILP 708
>ref|XP_001925819.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform 1 [Sus
scrofa].
Length = 835
Score = 60.5 bits (145), Expect = 2e-09
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +2
Query: 98 MAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATP 262
M + + + L+EMGFP KA+ TGN G EAAM+W+M H DDPD PL P
Sbjct: 631 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILP 685
>ref|XP_003359023.1| PREDICTED: ubiquitin-associated and SH3 domain-containing protein A
[Sus scrofa].
Length = 623
Score = 52.8 bits (125), Expect = 4e-07
Identities = 24/46 (52%), Positives = 32/46 (69%)
Frame = +2
Query: 116 LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPL 253
LE L++MGFP A KALA TG + +E A DWL H +DP +D+P+
Sbjct: 25 LEPLLDMGFPAHTALKALAATGRKTVEEASDWLRCHCNDPSLDDPI 70
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,132,615
Number of extensions: 777601
Number of successful extensions: 3760
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3723
Number of HSP's successfully gapped: 5
Length of query: 373
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 273
Effective length of database: 8,854,232
Effective search space: 2417205336
Effective search space used: 2417205336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002203
(1119 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 389 e-105
>Sscrofa_Chr02
|| Length = 162569375
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Plus
Query: 750 aggtcaggctgccagatgggacttccctgacccagacgttccgggcacgggaacagctgg 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8420831 aggtcaggctgccagatgggacttccctgacccagacgttccgggcacgggaacagctgg 8420890
Query: 810 cggccgtcaggctctatgtggagctccaccgtggggaggagctaggagggggccaggacc 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8420891 cggccgtcaggctctatgtggagctccaccgtggggaggagctaggagggggccaggacc 8420950
Query: 870 ctgtgcagttgctcagtggcttcccccggcgggccttctcagaagctgacatggagcggc 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8420951 ctgtgcagttgctcagtggcttcccccggcgggccttctcagaagctgacatggagcggc 8421010
Query: 930 ctctgcaggagctggg 945
||||||||||||||||
Sbjct: 8421011 ctctgcaggagctggg 8421026
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 386 aggatgttggagctgctggcccagaagcagcgggaacgtgaagagagagaggagcgggag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8419735 aggatgttggagctgctggcccagaagcagcgggaacgtgaagagagagaggagcgggag 8419794
Query: 446 gccctggaacgcgaacggcagcgcaggagacaagggcaggagttgtcagctgcccgacag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8419795 gccctggaacgcgaacggcagcgcaggagacaagggcaggagttgtcagctgcccgacag 8419854
Query: 506 cggctccaggaggatgagatgcgccgggctgctgaggagcggcggagggaaaaggctgaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8419855 cggctccaggaggatgagatgcgccgggctgctgaggagcggcggagggaaaaggctgaa 8419914
Query: 566 gagttagcggccag 579
||||||||||||||
Sbjct: 8419915 gagttagcggccag 8419928
Score = 218 bits (110), Expect = 5e-54
Identities = 113/114 (99%)
Strand = Plus / Plus
Query: 210 ggttgatggagcacgaagacgaccccgatgtggacgagccactagcgaccccccttggac 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8419246 ggttgatggagcacgaagacgaccccgatgtggacgagccactagcgaccccccttggac 8419305
Query: 270 atgtcctgggacgggaacccaccccttcggagcaaagtagccccgaaggacctg 323
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8419306 atgtcctgggacgggaacccaccccttcggagcaaagtagccccgaaggtcctg 8419359
Score = 218 bits (110), Expect = 5e-54
Identities = 121/124 (97%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 630 agtatgggggtagtgtgggttctcagccacccccacctacgacgacagagccaggtcctg 689
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 8420189 agtatgggggtagtgtgggttctcagccacccccacctacga---cagagccaggtcctg 8420245
Query: 690 ttcccgcctctcccagccaggagcctcccacgaagcgggagtatgaccagtgtcgcatcc 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8420246 ttcccgcctctcccagccaggagcctcccacgaagcgggagtatgaccagtgtcgcatcc 8420305
Query: 750 aggt 753
||||
Sbjct: 8420306 aggt 8420309
Score = 186 bits (94), Expect = 2e-44
Identities = 111/114 (97%), Gaps = 2/114 (1%)
Strand = Plus / Plus
Query: 944 ggacttgtgccttctgctgtcctcattgtggcca-gaaatgtcccagctgaaaggccttt 1002
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 8421196 ggacttgtgccttctgctgtcctcattgtggccaagaaatgtcccagctgagaggccttt 8421255
Query: 1003 tccc-ccatccctctctgacttttccatctttgataaagcactgacatcttcct 1055
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8421256 tcccaccatccctctctgacttttccatctttgataaagcactgacatcttcct 8421309
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 68 ggtccccgcggaagcggcggtggcggcgtcatggcggagctgacggctctggagagtctc 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8418875 ggtccccgcggaagcggcggtggcggcgtcatggcggagctgacggctctggagagtctc 8418934
Query: 128 atcgagatgggcttccccaggggacgcgcg 157
||||||||||||||||||||||||||||||
Sbjct: 8418935 atcgagatgggcttccccaggggacgcgcg 8418964
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 acagattcgggcacttccgcttcccccgggctttcttctcgtcagtgtccgcggccgggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8418710 acagattcgggcacttccgcttcccccgggctttcttctcgtcagtgtccgcggccgggc 8418769
Query: 61 cgctgccggt 70
||||||||||
Sbjct: 8418770 cgctgccggt 8418779
Score = 137 bits (69), Expect = 1e-29
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 316 aggacctgggtctgctgccggagaaggcaaacccccgctgagtgaagaggaaagacagga 375
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8419438 aggacctgggtctgctgccggagaaggcaaacccccgttgagtgaagaggaaagacagga 8419497
Query: 376 acagactaagagg 388
|||||||||||||
Sbjct: 8419498 acagactaagagg 8419510
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 157 ggagaaggctctggccctcacagggaaccagggcatcgaggctgcgatggactggt 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8419103 ggagaaggctctggccctcacagggaaccagggcatcgaggctgcgatggactggt 8419158
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 576 ccagacaaagagtccgagaaaagatcgaaagggacaaagcagagagagccaagaag 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8420017 ccagacaaagagtccgagaaaagatcgaaagggacaaagcagagagagccaagaag 8420072
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,406,600
Number of extensions: 200
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 10
Length of query: 1119
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1098
Effective length of database: 2,808,413,156
Effective search space: 3083637645288
Effective search space used: 3083637645288
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)