Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002218
(3534 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179688.1| HMG box transcription factor BBX [Bos taurus]. 1585 0.0
Alignment gi|XP_002684779.1| PREDICTED: bobby sox homolog (Drosophila) [B... 1585 0.0
Alignment gi|NP_001193180.1| transcription factor SOX-17 [Bos taurus]. 61 8e-09
Alignment gi|NP_001069257.1| transcription factor SOX-18 [Bos taurus]. 61 8e-09
Alignment gi|XP_002692695.1| PREDICTED: SRY-box 17-like [Bos taurus]. 61 8e-09
Alignment gi|NP_001157253.1| SRY (sex determining region Y)-box 14 [Bos t... 60 1e-08
Alignment gi|NP_001098933.1| SRY (sex determining region Y)-box 2 [Bos ta... 60 1e-08
Alignment gi|XP_002692040.1| PREDICTED: SRY (sex determining region Y)-bo... 59 2e-08
Alignment gi|XP_875555.1| PREDICTED: SRY (sex determining region Y)-box 1... 59 2e-08
Alignment gi|XP_002689511.1| PREDICTED: SRY (sex determining region Y)-bo... 57 1e-07
>ref|NP_001179688.1| HMG box transcription factor BBX [Bos taurus].
Length = 942
Score = 1585 bits (4105), Expect = 0.0
Identities = 797/942 (84%), Positives = 816/942 (86%), Gaps = 1/942 (0%)
Frame = +2
Query: 302 MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
MKGSNRNKDHSAEGEG GKRPKRKCLQWHPLLAKKLLDFS IDKVQLLGA
Sbjct: 1 MKGSNRNKDHSAEGEGTGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60
Query: 482 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
DGLEQDV ETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61 DGLEQDVGETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120
Query: 662 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPT-VNPRKKLWAFPSDSSR 838
LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSP PT VNPRKKLWAFPSDSSR
Sbjct: 121 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPAPTTVNPRKKLWAFPSDSSR 180
Query: 839 DLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSEL 1018
DLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDV ESSEL
Sbjct: 181 DLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVPESSEL 240
Query: 1019 RQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQ 1198
RQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTS LGGAEPVKRCGKSALFQ
Sbjct: 241 RQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSHLGGAEPVKRCGKSALFQ 300
Query: 1199 LAEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKS 1378
LAEMCLASEGVKMEESKLI+ KE DGGRIKELEKGKEER+ KMEK DEARLQKEA+ EKS
Sbjct: 301 LAEMCLASEGVKMEESKLIRTKELDGGRIKELEKGKEERDTKMEKTDEARLQKEAEFEKS 360
Query: 1379 AKENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIII 1558
AKEN RDSKE+RNFEELRMDDI+GIKME PK+IKKEELEEDQKC HFPDFSYSASSKIII
Sbjct: 361 AKENVRDSKEIRNFEELRMDDIIGIKMEAPKEIKKEELEEDQKCGHFPDFSYSASSKIII 420
Query: 1559 SDVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSS 1738
SDVPSRKDH+CHPHGIMIIEDPT L+ MDRHGNDKSTPKK CKKRQSS
Sbjct: 421 SDVPSRKDHICHPHGIMIIEDPTALSKPEKLKKKKKKNKMDRHGNDKSTPKKACKKRQSS 480
Query: 1739 ESDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXX 1918
ESDIESV+YTIEAVAKGDWGIEKLG+TPRKKVR SSSGKGSILDA
Sbjct: 481 ESDIESVMYTIEAVAKGDWGIEKLGDTPRKKVRPSSSGKGSILDAKPPKKKVKSREKKMS 540
Query: 1919 XXXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDC 2098
PPDF+SISASKNI GEVPEGIKAEPLTPTEDALPP+L GQAKPEDSDC
Sbjct: 541 KEKSSDPTKESRPPDFISISASKNISGEVPEGIKAEPLTPTEDALPPTLSGQAKPEDSDC 600
Query: 2099 HRKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEES 2278
HRKIETCG RKSERSCKGALYKTLVSEGMLTSLRANVD D EGCWNEES
Sbjct: 601 HRKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEES 660
Query: 2279 WTFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXX 2458
WTF+Q GTSGS EDS+LGSTKLDEEFEKKFNSLPQYSPVTFD
Sbjct: 661 WTFSQSGTSGSKKFKKTKPKEDSVLGSTKLDEEFEKKFNSLPQYSPVTFDRKCVPVPRKK 720
Query: 2459 XXTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDA 2638
TG+MS+EPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWS+KQ FLDA
Sbjct: 721 KKTGNMSAEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSSKQLFLDA 780
Query: 2639 IHPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTA 2818
IHPTEAIFSEDKNTTEPAYKVKNA SIPNTPEPTT QEPLVGSQKRKARKTKITHLVRTA
Sbjct: 781 IHPTEAIFSEDKNTTEPAYKVKNALSIPNTPEPTTTQEPLVGSQKRKARKTKITHLVRTA 840
Query: 2819 DGRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXX 2998
DGRVSPAGGTLDDKP+EQLQRSLPKVTE GC+DECSHNREAAETRSSTPEMP
Sbjct: 841 DGRVSPAGGTLDDKPREQLQRSLPKVTETGCSDECSHNREAAETRSSTPEMPAVSAFFSL 900
Query: 2999 XXXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 901 AALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 942
>ref|XP_002684779.1| PREDICTED: bobby sox homolog (Drosophila) [Bos taurus].
Length = 942
Score = 1585 bits (4105), Expect = 0.0
Identities = 797/942 (84%), Positives = 816/942 (86%), Gaps = 1/942 (0%)
Frame = +2
Query: 302 MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
MKGSNRNKDHSAEGEG GKRPKRKCLQWHPLLAKKLLDFS IDKVQLLGA
Sbjct: 1 MKGSNRNKDHSAEGEGTGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60
Query: 482 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
DGLEQDV ETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61 DGLEQDVGETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120
Query: 662 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPT-VNPRKKLWAFPSDSSR 838
LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSP PT VNPRKKLWAFPSDSSR
Sbjct: 121 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPAPTTVNPRKKLWAFPSDSSR 180
Query: 839 DLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSEL 1018
DLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDV ESSEL
Sbjct: 181 DLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVPESSEL 240
Query: 1019 RQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQ 1198
RQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTS LGGAEPVKRCGKSALFQ
Sbjct: 241 RQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSHLGGAEPVKRCGKSALFQ 300
Query: 1199 LAEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKS 1378
LAEMCLASEGVKMEESKLI+ KE DGGRIKELEKGKEER+ KMEK DEARLQKEA+ EKS
Sbjct: 301 LAEMCLASEGVKMEESKLIRTKELDGGRIKELEKGKEERDTKMEKTDEARLQKEAEFEKS 360
Query: 1379 AKENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIII 1558
AKEN RDSKE+RNFEELRMDDI+GIKME PK+IKKEELEEDQKC HFPDFSYSASSKIII
Sbjct: 361 AKENVRDSKEIRNFEELRMDDIIGIKMEAPKEIKKEELEEDQKCGHFPDFSYSASSKIII 420
Query: 1559 SDVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSS 1738
SDVPSRKDH+CHPHGIMIIEDPT L+ MDRHGNDKSTPKK CKKRQSS
Sbjct: 421 SDVPSRKDHICHPHGIMIIEDPTALSKPEKLKKKKKKNKMDRHGNDKSTPKKACKKRQSS 480
Query: 1739 ESDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXX 1918
ESDIESV+YTIEAVAKGDWGIEKLG+TPRKKVR SSSGKGSILDA
Sbjct: 481 ESDIESVMYTIEAVAKGDWGIEKLGDTPRKKVRPSSSGKGSILDAKPPKKKVKSREKKMS 540
Query: 1919 XXXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDC 2098
PPDF+SISASKNI GEVPEGIKAEPLTPTEDALPP+L GQAKPEDSDC
Sbjct: 541 KEKSSDPTKESRPPDFISISASKNISGEVPEGIKAEPLTPTEDALPPTLSGQAKPEDSDC 600
Query: 2099 HRKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEES 2278
HRKIETCG RKSERSCKGALYKTLVSEGMLTSLRANVD D EGCWNEES
Sbjct: 601 HRKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEES 660
Query: 2279 WTFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXX 2458
WTF+Q GTSGS EDS+LGSTKLDEEFEKKFNSLPQYSPVTFD
Sbjct: 661 WTFSQSGTSGSKKFKKTKPKEDSVLGSTKLDEEFEKKFNSLPQYSPVTFDRKCVPVPRKK 720
Query: 2459 XXTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDA 2638
TG+MS+EPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWS+KQ FLDA
Sbjct: 721 KKTGNMSAEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSSKQLFLDA 780
Query: 2639 IHPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTA 2818
IHPTEAIFSEDKNTTEPAYKVKNA SIPNTPEPTT QEPLVGSQKRKARKTKITHLVRTA
Sbjct: 781 IHPTEAIFSEDKNTTEPAYKVKNALSIPNTPEPTTTQEPLVGSQKRKARKTKITHLVRTA 840
Query: 2819 DGRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXX 2998
DGRVSPAGGTLDDKP+EQLQRSLPKVTE GC+DECSHNREAAETRSSTPEMP
Sbjct: 841 DGRVSPAGGTLDDKPREQLQRSLPKVTETGCSDECSHNREAAETRSSTPEMPAVSAFFSL 900
Query: 2999 XXXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 901 AALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 942
>ref|NP_001193180.1| transcription factor SOX-17 [Bos taurus].
Length = 410
Score = 60.8 bits (146), Expect = 8e-09
Identities = 30/82 (36%), Positives = 46/82 (56%)
Frame = +2
Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
E R RRPMNAF+++ K R + Q++P L N +K+L W L EK+ + + A+
Sbjct: 65 ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERL 124
Query: 710 KDAFMKANPGYKWCPTTNKPVK 775
+ M+ +P YK+ P K VK
Sbjct: 125 RVQHMQDHPNYKYRPRRRKQVK 146
>ref|NP_001069257.1| transcription factor SOX-18 [Bos taurus].
Length = 389
Score = 60.8 bits (146), Expect = 8e-09
Identities = 29/88 (32%), Positives = 48/88 (54%)
Frame = +2
Query: 512 EDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYT 691
E + E R RRPMNAF+++ K R + Q++P L N +K+L W L P EK+ +
Sbjct: 76 ERQGTDESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELSPAEKRPFV 135
Query: 692 DMAKEYKDAFMKANPGYKWCPTTNKPVK 775
+ A+ + ++ +P YK+ P K +
Sbjct: 136 EEAERLRVQHLRDHPNYKYRPRRKKQAR 163
>ref|XP_002692695.1| PREDICTED: SRY-box 17-like [Bos taurus].
Length = 410
Score = 60.8 bits (146), Expect = 8e-09
Identities = 30/82 (36%), Positives = 46/82 (56%)
Frame = +2
Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
E R RRPMNAF+++ K R + Q++P L N +K+L W L EK+ + + A+
Sbjct: 65 ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERL 124
Query: 710 KDAFMKANPGYKWCPTTNKPVK 775
+ M+ +P YK+ P K VK
Sbjct: 125 RVQHMQDHPNYKYRPRRRKQVK 146
>ref|NP_001157253.1| SRY (sex determining region Y)-box 14 [Bos taurus].
Length = 240
Score = 60.1 bits (144), Expect = 1e-08
Identities = 28/76 (36%), Positives = 43/76 (56%)
Frame = +2
Query: 527 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 706
P +RPMNAF+++ + R + QE+P++ N +K L W +L EK+ Y D AK
Sbjct: 4 PSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKR 63
Query: 707 YKDAFMKANPGYKWCP 754
+ MK +P YK+ P
Sbjct: 64 LRAQHMKEHPDYKYRP 79
>ref|NP_001098933.1| SRY (sex determining region Y)-box 2 [Bos taurus].
Length = 320
Score = 60.1 bits (144), Expect = 1e-08
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = +2
Query: 476 GADGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW 655
G G A + ++ R +RPMNAF+++ + R + QE+P++ N +K L W
Sbjct: 23 GGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEW 82
Query: 656 AVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCP 754
+L EK+ + D AK + MK +P YK+ P
Sbjct: 83 KLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 115
>ref|XP_002692040.1| PREDICTED: SRY (sex determining region Y)-box 1-like [Bos taurus].
Length = 369
Score = 59.3 bits (142), Expect = 2e-08
Identities = 27/75 (36%), Positives = 44/75 (58%)
Frame = +2
Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
+ R +RPMNAF+++ + R + QE+P++ N +K L W V+ EK+ + D AK
Sbjct: 43 QDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRL 102
Query: 710 KDAFMKANPGYKWCP 754
+ MK +P YK+ P
Sbjct: 103 RALHMKEHPDYKYRP 117
>ref|XP_875555.1| PREDICTED: SRY (sex determining region Y)-box 1-like [Bos taurus].
Length = 369
Score = 59.3 bits (142), Expect = 2e-08
Identities = 27/75 (36%), Positives = 44/75 (58%)
Frame = +2
Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
+ R +RPMNAF+++ + R + QE+P++ N +K L W V+ EK+ + D AK
Sbjct: 43 QDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRL 102
Query: 710 KDAFMKANPGYKWCP 754
+ MK +P YK+ P
Sbjct: 103 RALHMKEHPDYKYRP 117
>ref|XP_002689511.1| PREDICTED: SRY (sex determining region Y)-box 7 [Bos taurus].
Length = 389
Score = 56.6 bits (135), Expect = 1e-07
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Frame = +2
Query: 479 ADGLEQDVA-ETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATK--ILAD 649
+DGL A D+ E R RRPMNAF+++ K R + + P L N ++ +
Sbjct: 24 SDGLSPPAAPRPPGDKGSESRIRRPMNAFMVWAKDERKRLAVQXPDLHNAELSRCWVTGK 83
Query: 650 WWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSD 829
W L +K+ Y D A+ + M+ P YK+ P K K V+P L + D
Sbjct: 84 SWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKRLCKRVDPGFLLSSLSRD 143
Query: 830 SS---------RDLPSPKKTKTEEMPQ 883
+ R P K+ + E P+
Sbjct: 144 QNSLPEKRGGGRGAPGEKEDRGEYSPR 170
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 126,860,512
Number of extensions: 3331197
Number of successful extensions: 13221
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 13106
Number of HSP's successfully gapped: 24
Length of query: 1178
Length of database: 17,681,374
Length adjustment: 113
Effective length of query: 1065
Effective length of database: 13,942,430
Effective search space: 14848687950
Effective search space used: 14848687950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002218
(3534 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535728.2| PREDICTED: similar to HMG-BOX transcription fac... 1577 0.0
Alignment gi|XP_855647.1| PREDICTED: similar to HMG-BOX transcription fac... 1498 0.0
Alignment gi|XP_855743.1| PREDICTED: similar to HMG-BOX transcription fac... 1409 0.0
Alignment gi|XP_855676.1| PREDICTED: similar to HMG-BOX transcription fac... 436 e-122
Alignment gi|XP_856084.1| PREDICTED: hypothetical protein XP_850991 [Cani... 149 2e-35
Alignment gi|XP_541589.2| PREDICTED: similar to capicua homolog [Canis fa... 110 7e-24
Alignment gi|XP_544084.2| PREDICTED: similar to SRY-box 17 [Canis familia... 61 9e-09
Alignment gi|XP_545216.2| PREDICTED: similar to Transcription factor SOX-... 60 1e-08
Alignment gi|XP_542802.2| PREDICTED: similar to SRY-box 14 [Canis familia... 60 1e-08
Alignment gi|XP_849239.1| PREDICTED: similar to SRY (sex determining regi... 60 2e-08
>ref|XP_535728.2| PREDICTED: similar to HMG-BOX transcription factor BBX isoform 1
[Canis familiaris].
Length = 940
Score = 1577 bits (4083), Expect = 0.0
Identities = 795/941 (84%), Positives = 812/941 (86%)
Frame = +2
Query: 302 MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
MKGSNRNKDHS EGE AGKRPKRKCLQWHPLLAKKLLDFS IDKVQLLGA
Sbjct: 1 MKGSNRNKDHSTEGERAGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60
Query: 482 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
DGLEQDV ET DDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61 DGLEQDVGET-DDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 119
Query: 662 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 120 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 179
Query: 842 LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
LPSPKK KTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCR DVSES ELR
Sbjct: 180 LPSPKKAKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRQDVSESPELR 239
Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
QKSPLFQFAEISSSTSHP+ PSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL
Sbjct: 240 QKSPLFQFAEISSSTSHPETPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 299
Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
AEMCLASEGVKME+SKL+KAKE+DGGRIKELEKGKE+REIKMEK DEARLQK A+ E+ A
Sbjct: 300 AEMCLASEGVKMEDSKLMKAKESDGGRIKELEKGKEQREIKMEKTDEARLQKAAEFERPA 359
Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
KEN RDSKELRNFEELRMDDIM IKMED K+IKKEELEEDQKCSHFPDFSYSASSKIIIS
Sbjct: 360 KENVRDSKELRNFEELRMDDIMDIKMEDSKEIKKEELEEDQKCSHFPDFSYSASSKIIIS 419
Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
DVPSRKDH+CHPHGIMIIEDPT LN MDRHGNDKSTPKKTCKKRQSSE
Sbjct: 420 DVPSRKDHMCHPHGIMIIEDPTALNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSE 479
Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
SDIESV+YTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDA
Sbjct: 480 SDIESVMYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSK 539
Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
PPDF++ISASKNI GEVPEGIKAEPLTPTE+ALPPSL GQAKPE+SDCH
Sbjct: 540 EKSSDTTKESRPPDFINISASKNISGEVPEGIKAEPLTPTEEALPPSLSGQAKPEESDCH 599
Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
RKIETCG RKSERSCKGALYKTLVSEGMLTSLRANVD D EGCWNEESW
Sbjct: 600 RKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESW 659
Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
TFNQ GTSGS EDSLLGS KLDEEFEKKFNSLPQYSPVTFD
Sbjct: 660 TFNQSGTSGSKKFKKTKPKEDSLLGSAKLDEEFEKKFNSLPQYSPVTFDRKCVTVPRKKK 719
Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
TG+MSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQ FLDAI
Sbjct: 720 KTGNMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQLFLDAI 779
Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
HPTEAIFSEDKNTTEPA+KVKNA SIPNTPEPT QEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 780 HPTEAIFSEDKNTTEPAHKVKNALSIPNTPEPTATQEPLVGSQKRKARKTKITHLVRTAD 839
Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
GRVSPAGGTLDDKPKEQLQRSLPKV+E GCNDECSHN E AETRSSTPEMP
Sbjct: 840 GRVSPAGGTLDDKPKEQLQRSLPKVSETGCNDECSHNPETAETRSSTPEMPAVSAFFSLA 899
Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 900 ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 940
>ref|XP_855647.1| PREDICTED: similar to HMG-BOX transcription factor BBX isoform 2
[Canis familiaris].
Length = 910
Score = 1498 bits (3879), Expect = 0.0
Identities = 765/941 (81%), Positives = 782/941 (83%)
Frame = +2
Query: 302 MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
MKGSNRNKDHS EGE AGKRPKRKCLQWHPLLAKKLLDFS IDKVQLLGA
Sbjct: 1 MKGSNRNKDHSTEGERAGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60
Query: 482 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
DGLEQDV ET DDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61 DGLEQDVGET-DDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 119
Query: 662 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 120 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 179
Query: 842 LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
LPSPKK KTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCR DVSES ELR
Sbjct: 180 LPSPKKAKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRQDVSESPELR 239
Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
QKSPLFQFAEISSSTSHP+ PSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL
Sbjct: 240 QKSPLFQFAEISSSTSHPETPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 299
Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
AEMCLASEGVKME+SKL+KAKE+DGGRIKELEKGKE+REIKMEK DEARLQK A+ E+ A
Sbjct: 300 AEMCLASEGVKMEDSKLMKAKESDGGRIKELEKGKEQREIKMEKTDEARLQKAAEFERPA 359
Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
KEN RDSKELRNFEELRMDDIM IKMED K+IKKEELEEDQKCSHFPDFSYSASSKIIIS
Sbjct: 360 KENVRDSKELRNFEELRMDDIMDIKMEDSKEIKKEELEEDQKCSHFPDFSYSASSKIIIS 419
Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
DVPSRKDH+CHPHGIMIIEDPT LN MDRHGNDKSTPKKTCKKRQSSE
Sbjct: 420 DVPSRKDHMCHPHGIMIIEDPTALNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSE 479
Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
SDIESV+YTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDA
Sbjct: 480 SDIESVMYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSK 539
Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
PPDF++ISASKNI GEVPEGIKAEPLTPTE+ALPPSL GQAKPE+SDCH
Sbjct: 540 EKSSDTTKESRPPDFINISASKNISGEVPEGIKAEPLTPTEEALPPSLSGQAKPEESDCH 599
Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
RKIETCG RKSERSCKGALYKTLVSEGMLTSLRANVD D EGCWNEESW
Sbjct: 600 RKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESW 659
Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
TFNQ GTSGS EDSLLGS KLDEEFEKKFNSLPQYSPVTFD
Sbjct: 660 TFNQSGTSGSKKFKKTKPKEDSLLGSAKLDEEFEKKFNSLPQYSPVTFDRKCVTVPRKKK 719
Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
TG+MSSEPTKTS KGSGDKWSNKQ FLDAI
Sbjct: 720 KTGNMSSEPTKTS------------------------------KGSGDKWSNKQLFLDAI 749
Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
HPTEAIFSEDKNTTEPA+KVKNA SIPNTPEPT QEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 750 HPTEAIFSEDKNTTEPAHKVKNALSIPNTPEPTATQEPLVGSQKRKARKTKITHLVRTAD 809
Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
GRVSPAGGTLDDKPKEQLQRSLPKV+E GCNDECSHN E AETRSSTPEMP
Sbjct: 810 GRVSPAGGTLDDKPKEQLQRSLPKVSETGCNDECSHNPETAETRSSTPEMPAVSAFFSLA 869
Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 870 ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 910
>ref|XP_855743.1| PREDICTED: similar to HMG-BOX transcription factor BBX isoform 4
[Canis familiaris].
Length = 890
Score = 1409 bits (3647), Expect = 0.0
Identities = 729/941 (77%), Positives = 747/941 (79%)
Frame = +2
Query: 302 MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
MKGSNRNKDHS EGE AGKRPKRKCLQWHPLLAKKLLDFS IDKVQLLGA
Sbjct: 1 MKGSNRNKDHSTEGERAGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60
Query: 482 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
DGLEQDV ET DDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61 DGLEQDVGET-DDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 119
Query: 662 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 120 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 179
Query: 842 LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
LPSPKK KTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCR DVSES ELR
Sbjct: 180 LPSPKKAKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRQDVSESPELR 239
Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
QKSPLFQFAEISSSTSHP+ PSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL
Sbjct: 240 QKSPLFQFAEISSSTSHPETPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 299
Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
AEMCLASEGVKME+SKL+KAKE+DGGRIKELEKGKE+REIKMEK DEARLQK A+ E+ A
Sbjct: 300 AEMCLASEGVKMEDSKLMKAKESDGGRIKELEKGKEQREIKMEKTDEARLQKAAEFERPA 359
Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
KEN RDSKELRNFEELRMDDIM IKMED K+IKKEELEEDQKCSHFPDFSYSASSKIIIS
Sbjct: 360 KENVRDSKELRNFEELRMDDIMDIKMEDSKEIKKEELEEDQKCSHFPDFSYSASSKIIIS 419
Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
DVPSRKDH+CHPHGIMIIEDPT LN MDRHGNDKSTPKKTCKKRQSSE
Sbjct: 420 DVPSRKDHMCHPHGIMIIEDPTALNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSE 479
Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
SDIESV+YTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDA
Sbjct: 480 SDIESVMYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSK 539
Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
PPDF++ISASKNI GEVPEGIKAEPLTPTE+ALPPSL GQAKPE+SDCH
Sbjct: 540 EKSSDTTKESRPPDFINISASKNISGEVPEGIKAEPLTPTEEALPPSLSGQAKPEESDCH 599
Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
RKIETCG RKSERSCKGALYKTLVSEGMLTSLRANVD D EGCWNEESW
Sbjct: 600 RKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESW 659
Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
TFNQ GTSGS EDSLLGS KLDEEFEKKFNSLPQYSPVTFD
Sbjct: 660 TFNQSGTSGSKKFKKTKPKEDSLLGSAKLDEEFEKKFNSLPQYSPVTFDRKCVTVPRKKK 719
Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
TG+MSSEPTKTSK F K + K K+ PN P
Sbjct: 720 KTGNMSSEPTKTSKAIFSEDKNTT--EPAHKVKNALSIPNTP------------------ 759
Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
EPT QEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 760 ------------------------------EPTATQEPLVGSQKRKARKTKITHLVRTAD 789
Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
GRVSPAGGTLDDKPKEQLQRSLPKV+E GCNDECSHN E AETRSSTPEMP
Sbjct: 790 GRVSPAGGTLDDKPKEQLQRSLPKVSETGCNDECSHNPETAETRSSTPEMPAVSAFFSLA 849
Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 850 ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 890
>ref|XP_855676.1| PREDICTED: similar to HMG-BOX transcription factor BBX isoform 3
[Canis familiaris].
Length = 293
Score = 436 bits (1122), Expect = e-122
Identities = 217/256 (84%), Positives = 220/256 (85%)
Frame = +2
Query: 2357 STKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXXXTGSMSSEPTKTSKGPFQSQKKNLF 2536
S KLDEEFEKKFNSLPQYSPVTFD TG+MSSEPTKTSKGPFQSQKKNLF
Sbjct: 38 SAKLDEEFEKKFNSLPQYSPVTFDRKCVTVPRKKKKTGNMSSEPTKTSKGPFQSQKKNLF 97
Query: 2537 HKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAIHPTEAIFSEDKNTTEPAYKVKNAPS 2716
HKIVSKYKHKKEKPNVPEKGSGDKWSNKQ FLDAIHPTEAIFSEDKNTTEPA+KVKNA S
Sbjct: 98 HKIVSKYKHKKEKPNVPEKGSGDKWSNKQLFLDAIHPTEAIFSEDKNTTEPAHKVKNALS 157
Query: 2717 IPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKV 2896
IPNTPEPT QEPLVGSQKRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKV
Sbjct: 158 IPNTPEPTATQEPLVGSQKRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKV 217
Query: 2897 TEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXXXXXXXXXMENVHRGQRSTPLTHDGQ 3076
+E GCNDECSHN E AETRSSTPEMP MENVHRGQRSTPLTHDGQ
Sbjct: 218 SETGCNDECSHNPETAETRSSTPEMPAVSAFFSLAALAEVAAMENVHRGQRSTPLTHDGQ 277
Query: 3077 PKEMPQAPVLISCADQ 3124
PKEMPQAPVLISCADQ
Sbjct: 278 PKEMPQAPVLISCADQ 293
>ref|XP_856084.1| PREDICTED: hypothetical protein XP_850991 [Canis familiaris].
Length = 169
Score = 149 bits (376), Expect = 2e-35
Identities = 72/85 (84%), Positives = 74/85 (87%)
Frame = +2
Query: 32 VKRRQSGSASSSPLSHREPLTGR*GRATHTPSRPASPRGHYHMTKALPQFIFLSVYFPFA 211
V+RRQ GSA S LSH TGR GRATHTPS PASPRGHYHMTKALPQFIFL VYFPFA
Sbjct: 85 VERRQRGSAGSPALSHSRAPTGRPGRATHTPSHPASPRGHYHMTKALPQFIFLPVYFPFA 144
Query: 212 FLESCCITEAGSSDVPLKSQWKVLT 286
FLESCCITEAG+SDVPLKSQWKVLT
Sbjct: 145 FLESCCITEAGNSDVPLKSQWKVLT 169
>ref|XP_541589.2| PREDICTED: similar to capicua homolog [Canis familiaris].
Length = 2516
Score = 110 bits (276), Expect = 7e-24
Identities = 56/117 (47%), Positives = 72/117 (61%), Gaps = 4/117 (3%)
Frame = +2
Query: 461 KVQLLGADGLEQDVAETEDDESPEQRA----RRPMNAFLLFCKRHRSLVRQEHPRLDNRG 628
+ Q L A E+D + +D SP +R RRPMNAF++F KRHR+LV Q HP DNR
Sbjct: 1075 RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT 1134
Query: 629 ATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNP 799
+KIL +WW L PKEKQKY D+A + K+A KA+P +KWC NK K + P
Sbjct: 1135 VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWC---NKDRKKSSSEAKP 1188
>ref|XP_544084.2| PREDICTED: similar to SRY-box 17 [Canis familiaris].
Length = 402
Score = 60.8 bits (146), Expect = 9e-09
Identities = 29/85 (34%), Positives = 47/85 (55%)
Frame = +2
Query: 521 ESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMA 700
+ E R RRPMNAF+++ K R + Q++P L N +K+L W L + K+ + + A
Sbjct: 45 QGSESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALSLRRKRPFVEEA 104
Query: 701 KEYKDAFMKANPGYKWCPTTNKPVK 775
+ + M+ +P YK+ P K VK
Sbjct: 105 ERLRVQHMQDHPNYKYRPRRRKQVK 129
>ref|XP_545216.2| PREDICTED: similar to Transcription factor SOX-2 [Canis
familiaris].
Length = 489
Score = 60.1 bits (144), Expect = 1e-08
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = +2
Query: 476 GADGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW 655
G G A + ++ R +RPMNAF+++ + R + QE+P++ N +K L W
Sbjct: 192 GGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEW 251
Query: 656 AVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCP 754
+L EK+ + D AK + MK +P YK+ P
Sbjct: 252 KLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 284
>ref|XP_542802.2| PREDICTED: similar to SRY-box 14 [Canis familiaris].
Length = 578
Score = 60.1 bits (144), Expect = 1e-08
Identities = 28/76 (36%), Positives = 43/76 (56%)
Frame = +2
Query: 527 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 706
P +RPMNAF+++ + R + QE+P++ N +K L W +L EK+ Y D AK
Sbjct: 342 PSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKR 401
Query: 707 YKDAFMKANPGYKWCP 754
+ MK +P YK+ P
Sbjct: 402 LRAQHMKEHPDYKYRP 417
>ref|XP_849239.1| PREDICTED: similar to SRY (sex determining region Y)-box 1 [Canis
familiaris].
Length = 403
Score = 59.7 bits (143), Expect = 2e-08
Identities = 27/78 (34%), Positives = 46/78 (58%)
Frame = +2
Query: 521 ESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMA 700
++ + R +RPMNAF+++ + R + QE+P++ N +K L W V+ EK+ + D A
Sbjct: 51 KASQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEA 110
Query: 701 KEYKDAFMKANPGYKWCP 754
K + MK +P YK+ P
Sbjct: 111 KRLRALHMKEHPDYKYRP 128
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 132,018,753
Number of extensions: 3390541
Number of successful extensions: 13671
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 13542
Number of HSP's successfully gapped: 42
Length of query: 1178
Length of database: 18,874,504
Length adjustment: 114
Effective length of query: 1064
Effective length of database: 15,074,200
Effective search space: 16038948800
Effective search space used: 16038948800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002218
(3534 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001136040.1| HMG box transcription factor BBX isoform 1 [... 1565 0.0
Alignment gi|NP_064620.2| HMG box transcription factor BBX isoform 2 [Hom... 1487 0.0
Alignment gi|NP_055940.3| protein capicua homolog [Homo sapiens]. 111 5e-24
Alignment gi|NP_113627.1| transcription factor SOX-7 [Homo sapiens]. 62 5e-09
Alignment gi|NP_071899.1| transcription factor SOX-17 [Homo sapiens]. 61 8e-09
Alignment gi|NP_003097.1| transcription factor SOX-2 [Homo sapiens]. 60 1e-08
Alignment gi|NP_004180.1| transcription factor SOX-14 [Homo sapiens]. 60 1e-08
Alignment gi|NP_009015.1| transcription factor SOX-21 [Homo sapiens]. 59 2e-08
Alignment gi|NP_005977.2| transcription factor SOX-1 [Homo sapiens]. 59 2e-08
Alignment gi|NP_060889.1| transcription factor SOX-18 [Homo sapiens]. 59 4e-08
>ref|NP_001136040.1| HMG box transcription factor BBX isoform 1 [Homo sapiens].
Length = 941
Score = 1565 bits (4053), Expect = 0.0
Identities = 785/941 (83%), Positives = 804/941 (85%)
Frame = +2
Query: 302 MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
MKGSNRNKDHSAEGEG GKRPKRKCLQWHPLLAKKLLDFS IDKVQLLGA
Sbjct: 1 MKGSNRNKDHSAEGEGVGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60
Query: 482 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
DGLEQDV ETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61 DGLEQDVGETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120
Query: 662 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 121 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 180
Query: 842 LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
LPSPKK KTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPE+SSGTCRPDVSES ELR
Sbjct: 181 LPSPKKAKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEVSSGTCRPDVSESPELR 240
Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
QKSPLFQFAEISSSTSH DA +KQCQ SALFQFAEISSNTSQLGGAEPVKRCGKSALFQL
Sbjct: 241 QKSPLFQFAEISSSTSHSDASTKQCQTSALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 300
Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
AEMCLASEG+KMEESKLIKAKE+DGGRIKELEKGKEE+EIKMEK DE RLQKEA+ EKSA
Sbjct: 301 AEMCLASEGMKMEESKLIKAKESDGGRIKELEKGKEEKEIKMEKTDETRLQKEAEFEKSA 360
Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
KEN RDSKELRNFE L++DDIM IKMEDPK+I+KEELEED KCSHFPDFSYSASSKIIIS
Sbjct: 361 KENLRDSKELRNFEALQIDDIMAIKMEDPKEIRKEELEEDHKCSHFPDFSYSASSKIIIS 420
Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
DVPSRKDH+CHPHGIMIIEDP LN MDRHGNDKSTPKKTCKKRQSSE
Sbjct: 421 DVPSRKDHMCHPHGIMIIEDPAALNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSE 480
Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
SDIESVIYTIEAVAKGDWGIEKLG+TPRKKVRTSSSGKGSILDA
Sbjct: 481 SDIESVIYTIEAVAKGDWGIEKLGDTPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSK 540
Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
PPDF+SISASKNI GE PEGIKAEPLTP EDALPPSL GQAKPEDSDCH
Sbjct: 541 EKSSDTTKESRPPDFISISASKNISGETPEGIKAEPLTPMEDALPPSLSGQAKPEDSDCH 600
Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
RKIETCG RKSERSCKGALYKTLVSEGMLTSLRANVD D EGCWNEESW
Sbjct: 601 RKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESW 660
Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
TF+Q GTSGS ED LLGS KLDEEFEKKFNSLPQYSPVTFD
Sbjct: 661 TFSQSGTSGSKKFKKTKPKEDCLLGSAKLDEEFEKKFNSLPQYSPVTFDRKCVPVPRKKK 720
Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
TG++SSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQ FLDAI
Sbjct: 721 KTGNVSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQLFLDAI 780
Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
HPTEAIFSED+NT EP +KVKN PSI NTPEPTT QEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 781 HPTEAIFSEDRNTMEPVHKVKNIPSIFNTPEPTTTQEPLVGSQKRKARKTKITHLVRTAD 840
Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
GRVSPAGGTLDDKPKEQLQRSLPK TE CND+CSHN E ETRSSTPEMP
Sbjct: 841 GRVSPAGGTLDDKPKEQLQRSLPKATETDCNDKCSHNTEVGETRSSTPEMPAVSAFFSLA 900
Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 901 ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 941
>ref|NP_064620.2| HMG box transcription factor BBX isoform 2 [Homo sapiens].
Length = 911
Score = 1487 bits (3849), Expect = 0.0
Identities = 755/941 (80%), Positives = 774/941 (82%)
Frame = +2
Query: 302 MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
MKGSNRNKDHSAEGEG GKRPKRKCLQWHPLLAKKLLDFS IDKVQLLGA
Sbjct: 1 MKGSNRNKDHSAEGEGVGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60
Query: 482 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
DGLEQDV ETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61 DGLEQDVGETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120
Query: 662 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 121 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 180
Query: 842 LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
LPSPKK KTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPE+SSGTCRPDVSES ELR
Sbjct: 181 LPSPKKAKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEVSSGTCRPDVSESPELR 240
Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
QKSPLFQFAEISSSTSH DA +KQCQ SALFQFAEISSNTSQLGGAEPVKRCGKSALFQL
Sbjct: 241 QKSPLFQFAEISSSTSHSDASTKQCQTSALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 300
Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
AEMCLASEG+KMEESKLIKAKE+DGGRIKELEKGKEE+EIKMEK DE RLQKEA+ EKSA
Sbjct: 301 AEMCLASEGMKMEESKLIKAKESDGGRIKELEKGKEEKEIKMEKTDETRLQKEAEFEKSA 360
Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
KEN RDSKELRNFE L++DDIM IKMEDPK+I+KEELEED KCSHFPDFSYSASSKIIIS
Sbjct: 361 KENLRDSKELRNFEALQIDDIMAIKMEDPKEIRKEELEEDHKCSHFPDFSYSASSKIIIS 420
Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
DVPSRKDH+CHPHGIMIIEDP LN MDRHGNDKSTPKKTCKKRQSSE
Sbjct: 421 DVPSRKDHMCHPHGIMIIEDPAALNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSE 480
Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
SDIESVIYTIEAVAKGDWGIEKLG+TPRKKVRTSSSGKGSILDA
Sbjct: 481 SDIESVIYTIEAVAKGDWGIEKLGDTPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSK 540
Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
PPDF+SISASKNI GE PEGIKAEPLTP EDALPPSL GQAKPEDSDCH
Sbjct: 541 EKSSDTTKESRPPDFISISASKNISGETPEGIKAEPLTPMEDALPPSLSGQAKPEDSDCH 600
Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
RKIETCG RKSERSCKGALYKTLVSEGMLTSLRANVD D EGCWNEESW
Sbjct: 601 RKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESW 660
Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
TF+Q GTSGS ED LLGS KLDEEFEKKFNSLPQYSPVTFD
Sbjct: 661 TFSQSGTSGSKKFKKTKPKEDCLLGSAKLDEEFEKKFNSLPQYSPVTFDRKCVPVPRKKK 720
Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
TG++SSEPTKTS KGSGDKWSNKQ FLDAI
Sbjct: 721 KTGNVSSEPTKTS------------------------------KGSGDKWSNKQLFLDAI 750
Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
HPTEAIFSED+NT EP +KVKN PSI NTPEPTT QEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 751 HPTEAIFSEDRNTMEPVHKVKNIPSIFNTPEPTTTQEPLVGSQKRKARKTKITHLVRTAD 810
Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
GRVSPAGGTLDDKPKEQLQRSLPK TE CND+CSHN E ETRSSTPEMP
Sbjct: 811 GRVSPAGGTLDDKPKEQLQRSLPKATETDCNDKCSHNTEVGETRSSTPEMPAVSAFFSLA 870
Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 871 ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 911
>ref|NP_055940.3| protein capicua homolog [Homo sapiens].
Length = 1608
Score = 111 bits (277), Expect = 5e-24
Identities = 87/289 (30%), Positives = 128/289 (44%), Gaps = 20/289 (6%)
Frame = +2
Query: 461 KVQLLGADGLEQDVAETEDDESPEQRA----RRPMNAFLLFCKRHRSLVRQEHPRLDNRG 628
+ Q L A E+D + +D SP +R RRPMNAF++F KRHR+LV Q HP DNR
Sbjct: 170 RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT 229
Query: 629 ATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKK 808
+KIL +WW L PKEKQKY D+A + K+A KA+P +KWC NK K + P
Sbjct: 230 VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWC---NKDRKKSSSEAKPTSL 286
Query: 809 LWAFPSDSSRDLPSPKKTKTEEMPQLNFG---------MADPTQMGGLSMLLLAGEHALG 961
A +R+ S +T T P ++ ++ T+ G S H +G
Sbjct: 287 GLAGGHKETRE-RSMSETGTAAAPGVSSELLSVAAQTLLSSDTKAPGSSSCGAERLHTVG 345
Query: 962 TPEISSGTCRPDVSESSELR-------QKSPLFQFAEISSSTSHPDAPSKQCQASALFQF 1120
P G+ RP S + L + ++ S + P Q A F
Sbjct: 346 GP----GSARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKPSTQYGAPGPF 401
Query: 1121 AEISSNTSQLGGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKE 1267
A + P +++ Q A ASE + +E +++ +E
Sbjct: 402 AAPGEGGALAATGRPPLLPTRASRSQRA----ASEDMTSDEERMVICEE 446
>ref|NP_113627.1| transcription factor SOX-7 [Homo sapiens].
Length = 388
Score = 61.6 bits (148), Expect = 5e-09
Identities = 32/94 (34%), Positives = 48/94 (51%)
Frame = +2
Query: 518 DESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDM 697
D+ E R RRPMNAF+++ K R + ++P L N +K+L W L +K+ Y D
Sbjct: 38 DKGSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDE 97
Query: 698 AKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNP 799
A+ + M+ P YK+ P K K V+P
Sbjct: 98 AERLRLQHMQDYPNYKYRPRRKKQAKRLCKRVDP 131
>ref|NP_071899.1| transcription factor SOX-17 [Homo sapiens].
Length = 414
Score = 60.8 bits (146), Expect = 8e-09
Identities = 30/82 (36%), Positives = 46/82 (56%)
Frame = +2
Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
E R RRPMNAF+++ K R + Q++P L N +K+L W L EK+ + + A+
Sbjct: 65 ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERL 124
Query: 710 KDAFMKANPGYKWCPTTNKPVK 775
+ M+ +P YK+ P K VK
Sbjct: 125 RVQHMQDHPNYKYRPRRRKQVK 146
>ref|NP_003097.1| transcription factor SOX-2 [Homo sapiens].
Length = 317
Score = 60.1 bits (144), Expect = 1e-08
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = +2
Query: 476 GADGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW 655
G G A + ++ R +RPMNAF+++ + R + QE+P++ N +K L W
Sbjct: 20 GGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEW 79
Query: 656 AVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCP 754
+L EK+ + D AK + MK +P YK+ P
Sbjct: 80 KLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 112
>ref|NP_004180.1| transcription factor SOX-14 [Homo sapiens].
Length = 240
Score = 60.1 bits (144), Expect = 1e-08
Identities = 28/76 (36%), Positives = 43/76 (56%)
Frame = +2
Query: 527 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 706
P +RPMNAF+++ + R + QE+P++ N +K L W +L EK+ Y D AK
Sbjct: 4 PSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKR 63
Query: 707 YKDAFMKANPGYKWCP 754
+ MK +P YK+ P
Sbjct: 64 LRAQHMKEHPDYKYRP 79
>ref|NP_009015.1| transcription factor SOX-21 [Homo sapiens].
Length = 276
Score = 59.3 bits (142), Expect = 2e-08
Identities = 32/99 (32%), Positives = 50/99 (50%)
Frame = +2
Query: 527 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 706
P +RPMNAF+++ + R + QE+P++ N +K L W +L EK+ + D AK
Sbjct: 4 PVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKR 63
Query: 707 YKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFP 823
+ MK +P YK+ P P +K +AFP
Sbjct: 64 LRAMHMKEHPDYKYRPRRK-------PKTLLKKDKFAFP 95
>ref|NP_005977.2| transcription factor SOX-1 [Homo sapiens].
Length = 391
Score = 59.3 bits (142), Expect = 2e-08
Identities = 27/75 (36%), Positives = 44/75 (58%)
Frame = +2
Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
+ R +RPMNAF+++ + R + QE+P++ N +K L W V+ EK+ + D AK
Sbjct: 48 QDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRL 107
Query: 710 KDAFMKANPGYKWCP 754
+ MK +P YK+ P
Sbjct: 108 RALHMKEHPDYKYRP 122
>ref|NP_060889.1| transcription factor SOX-18 [Homo sapiens].
Length = 384
Score = 58.5 bits (140), Expect = 4e-08
Identities = 28/88 (31%), Positives = 48/88 (54%)
Frame = +2
Query: 512 EDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYT 691
E + E R RRPMNAF+++ K R + Q++P L N +K+L W L+ EK+ +
Sbjct: 76 ERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFV 135
Query: 692 DMAKEYKDAFMKANPGYKWCPTTNKPVK 775
+ A+ + ++ +P YK+ P K +
Sbjct: 136 EEAERLRVQHLRDHPNYKYRPRRKKQAR 163
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 130,082,895
Number of extensions: 3378514
Number of successful extensions: 13943
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 13794
Number of HSP's successfully gapped: 22
Length of query: 1178
Length of database: 18,297,164
Length adjustment: 114
Effective length of query: 1064
Effective length of database: 14,539,268
Effective search space: 15469781152
Effective search space used: 15469781152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002218
(3534 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081720.2| HMG box transcription factor BBX [Mus musculus]. 1412 0.0
Alignment gi|NP_001103602.1| protein capicua homolog isoform c [Mus muscu... 112 2e-24
Alignment gi|NP_001103601.1| protein capicua homolog isoform b [Mus muscu... 112 2e-24
Alignment gi|NP_082158.2| protein capicua homolog isoform a [Mus musculus]. 112 2e-24
Alignment gi|NP_035576.1| transcription factor SOX-7 [Mus musculus]. 64 1e-09
Alignment gi|NP_035571.1| transcription factor SOX-17 [Mus musculus]. 62 4e-09
Alignment gi|NP_035570.1| transcription factor SOX-14 [Mus musculus]. 60 1e-08
Alignment gi|NP_035573.3| transcription factor SOX-2 [Mus musculus]. 60 2e-08
Alignment gi|NP_808421.1| transcription factor SOX-21 [Mus musculus]. 59 2e-08
Alignment gi|NP_033259.2| transcription factor SOX-1 [Mus musculus]. 59 2e-08
>ref|NP_081720.2| HMG box transcription factor BBX [Mus musculus].
Length = 907
Score = 1412 bits (3655), Expect = 0.0
Identities = 722/941 (76%), Positives = 762/941 (80%)
Frame = +2
Query: 302 MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
MKGSNRNKDHS EGEG GKRPKRKCLQWHPLLAKKLLDFS IDKVQLL A
Sbjct: 1 MKGSNRNKDHSTEGEGDGKRPKRKCLQWHPLLAKKLLDFSEEEEEDEEEEDIDKVQLLEA 60
Query: 482 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120
Query: 662 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
LDPKEKQKYTDMAKEYKDAFMKANPGY+WCPTTNKPVKSPTPTVNPRKKLWAFP DSSRD
Sbjct: 121 LDPKEKQKYTDMAKEYKDAFMKANPGYRWCPTTNKPVKSPTPTVNPRKKLWAFPPDSSRD 180
Query: 842 LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
LP+PKK KT E+PQLNFGMADPTQMGGLSMLLLAGEHALGTPE SSGTCRPD+SES ELR
Sbjct: 181 LPTPKKAKT-EVPQLNFGMADPTQMGGLSMLLLAGEHALGTPEASSGTCRPDISESPELR 239
Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
QKSPLFQFAEISS TSHPDAPSKQCQASALFQFAEISS+TSQLGG EPVKRCG SALFQL
Sbjct: 240 QKSPLFQFAEISSRTSHPDAPSKQCQASALFQFAEISSSTSQLGGTEPVKRCGNSALFQL 299
Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
AEMCLASEGVKME++KLIK+KE+DGGRI+E+EKGKEER ++EK E QKEA+ KSA
Sbjct: 300 AEMCLASEGVKMEDTKLIKSKESDGGRIEEIEKGKEERGTEVEKTTETSFQKEAEFGKSA 359
Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
K N R+SK+LR+ E+L+MD++M IK+EDPK+I+KE E+DQK SHFPDFSYSASSKIIIS
Sbjct: 360 KGNVRESKDLRDIEQLQMDNVMAIKVEDPKEIRKEP-EDDQKYSHFPDFSYSASSKIIIS 418
Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
VPSRKDH+CHPHGIMIIEDPTTLN +DRHGNDKSTPKKTCKKRQSSE
Sbjct: 419 GVPSRKDHMCHPHGIMIIEDPTTLNKPEKIKKKKKKNKLDRHGNDKSTPKKTCKKRQSSE 478
Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
SDIESV+YTIEAVAKGDWG++KLGETPRKKVR SSSGKG ILDA
Sbjct: 479 SDIESVMYTIEAVAKGDWGVDKLGETPRKKVRPSSSGKGGILDAKPPKKKVKSKEKKVSK 538
Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
PPDFLSISASK++PGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH
Sbjct: 539 EKCSDITKESRPPDFLSISASKSVPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 598
Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
RK ETCG RKSERSCKGALYKTLVSEGMLTSLRANVD D EGCW+EESW
Sbjct: 599 RKTETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWSEESW 658
Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
TFNQ GTSGS EDS LGS KLDEEFEKKFNSLPQYSP+TFD
Sbjct: 659 TFNQSGTSGS-KKFKKKLREDSFLGSAKLDEEFEKKFNSLPQYSPITFDRKCVSTPRKKK 717
Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
TG+MSSE TKTS KGSGDKWS+KQFFLDAI
Sbjct: 718 KTGNMSSESTKTS------------------------------KGSGDKWSHKQFFLDAI 747
Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
HPTEAIFSEDK+TTEPA+KVKNA SIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 748 HPTEAIFSEDKSTTEPAFKVKNALSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 807
Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
GRVSPAGGTLDDKPKEQLQRSLPKV C D CSH+ E RSSTP+MP
Sbjct: 808 GRVSPAGGTLDDKPKEQLQRSLPKVPGTYCGDNCSHS-TVEEPRSSTPDMPAVSAFFSLA 866
Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 867 ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 907
>ref|NP_001103602.1| protein capicua homolog isoform c [Mus musculus].
Length = 1604
Score = 112 bits (281), Expect = 2e-24
Identities = 87/289 (30%), Positives = 129/289 (44%), Gaps = 20/289 (6%)
Frame = +2
Query: 461 KVQLLGADGLEQDVAETEDDESPEQRA----RRPMNAFLLFCKRHRSLVRQEHPRLDNRG 628
+ Q L A E+D + +D SP +R RRPMNAF++F KRHR+LV Q HP DNR
Sbjct: 170 RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT 229
Query: 629 ATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKK 808
+KIL +WW L PKEKQKY D+A + K+A KA+P +KWC NK K + P
Sbjct: 230 VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWC---NKDRKKSSSEAKPASL 286
Query: 809 LWAFPSDSSRDLPSPKKTKTEEMPQLNFG---------MADPTQMGGLSMLLLAGEHALG 961
A +R+ S +T T P ++ ++ T++ G HA+G
Sbjct: 287 GLAGGHKETRE-RSMSETGTAAAPGVSSELLSVAAQTLLSSDTKVPGSGPCGAERLHAVG 345
Query: 962 TPEISSGTCRPDVSESSELR-------QKSPLFQFAEISSSTSHPDAPSKQCQASALFQF 1120
P G+ RP S + L + ++ S + P Q A F
Sbjct: 346 AP----GSARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKPSPQYGAPGSF 401
Query: 1121 AEISSNTSQLGGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKE 1267
A + P +++ Q A ASE + +E +++ +E
Sbjct: 402 AAPGEGGTLATSGRPPLLPSRASRSQRA----ASEDMTSDEERMVICEE 446
>ref|NP_001103601.1| protein capicua homolog isoform b [Mus musculus].
Length = 1603
Score = 112 bits (281), Expect = 2e-24
Identities = 87/289 (30%), Positives = 129/289 (44%), Gaps = 20/289 (6%)
Frame = +2
Query: 461 KVQLLGADGLEQDVAETEDDESPEQRA----RRPMNAFLLFCKRHRSLVRQEHPRLDNRG 628
+ Q L A E+D + +D SP +R RRPMNAF++F KRHR+LV Q HP DNR
Sbjct: 170 RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT 229
Query: 629 ATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKK 808
+KIL +WW L PKEKQKY D+A + K+A KA+P +KWC NK K + P
Sbjct: 230 VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWC---NKDRKKSSSEAKPASL 286
Query: 809 LWAFPSDSSRDLPSPKKTKTEEMPQLNFG---------MADPTQMGGLSMLLLAGEHALG 961
A +R+ S +T T P ++ ++ T++ G HA+G
Sbjct: 287 GLAGGHKETRE-RSMSETGTAAAPGVSSELLSVAAQTLLSSDTKVPGSGPCGAERLHAVG 345
Query: 962 TPEISSGTCRPDVSESSELR-------QKSPLFQFAEISSSTSHPDAPSKQCQASALFQF 1120
P G+ RP S + L + ++ S + P Q A F
Sbjct: 346 AP----GSARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKPSPQYGAPGSF 401
Query: 1121 AEISSNTSQLGGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKE 1267
A + P +++ Q A ASE + +E +++ +E
Sbjct: 402 AAPGEGGTLATSGRPPLLPSRASRSQRA----ASEDMTSDEERMVICEE 446
>ref|NP_082158.2| protein capicua homolog isoform a [Mus musculus].
Length = 1604
Score = 112 bits (281), Expect = 2e-24
Identities = 87/289 (30%), Positives = 129/289 (44%), Gaps = 20/289 (6%)
Frame = +2
Query: 461 KVQLLGADGLEQDVAETEDDESPEQRA----RRPMNAFLLFCKRHRSLVRQEHPRLDNRG 628
+ Q L A E+D + +D SP +R RRPMNAF++F KRHR+LV Q HP DNR
Sbjct: 170 RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT 229
Query: 629 ATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKK 808
+KIL +WW L PKEKQKY D+A + K+A KA+P +KWC NK K + P
Sbjct: 230 VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWC---NKDRKKSSSEAKPASL 286
Query: 809 LWAFPSDSSRDLPSPKKTKTEEMPQLNFG---------MADPTQMGGLSMLLLAGEHALG 961
A +R+ S +T T P ++ ++ T++ G HA+G
Sbjct: 287 GLAGGHKETRE-RSMSETGTAAAPGVSSELLSVAAQTLLSSDTKVPGSGPCGAERLHAVG 345
Query: 962 TPEISSGTCRPDVSESSELR-------QKSPLFQFAEISSSTSHPDAPSKQCQASALFQF 1120
P G+ RP S + L + ++ S + P Q A F
Sbjct: 346 AP----GSARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKPSPQYGAPGSF 401
Query: 1121 AEISSNTSQLGGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKE 1267
A + P +++ Q A ASE + +E +++ +E
Sbjct: 402 AAPGEGGTLATSGRPPLLPSRASRSQRA----ASEDMTSDEERMVICEE 446
>ref|NP_035576.1| transcription factor SOX-7 [Mus musculus].
Length = 380
Score = 63.5 bits (153), Expect = 1e-09
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Frame = +2
Query: 479 ADGLEQD-VAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW 655
+DGL V D+S E R RRPMNAF+++ K R + ++P L N +K+L W
Sbjct: 24 SDGLSPPAVPRPSGDKSSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSW 83
Query: 656 AVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNP 799
L +K+ Y D A+ + M+ P YK+ P K K V+P
Sbjct: 84 KALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQGKRLCKRVDP 131
>ref|NP_035571.1| transcription factor SOX-17 [Mus musculus].
Length = 419
Score = 61.6 bits (148), Expect = 4e-09
Identities = 32/91 (35%), Positives = 48/91 (52%)
Frame = +2
Query: 503 AETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQ 682
A T E R RRPMNAF+++ K R + Q++P L N +K+L W L EK+
Sbjct: 56 AGTSGRAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKR 115
Query: 683 KYTDMAKEYKDAFMKANPGYKWCPTTNKPVK 775
+ + A+ + M+ +P YK+ P K VK
Sbjct: 116 PFVEEAERLRVQHMQDHPNYKYRPRRRKQVK 146
>ref|NP_035570.1| transcription factor SOX-14 [Mus musculus].
Length = 240
Score = 60.1 bits (144), Expect = 1e-08
Identities = 28/76 (36%), Positives = 43/76 (56%)
Frame = +2
Query: 527 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 706
P +RPMNAF+++ + R + QE+P++ N +K L W +L EK+ Y D AK
Sbjct: 4 PSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKR 63
Query: 707 YKDAFMKANPGYKWCP 754
+ MK +P YK+ P
Sbjct: 64 LRAQHMKEHPDYKYRP 79
>ref|NP_035573.3| transcription factor SOX-2 [Mus musculus].
Length = 319
Score = 59.7 bits (143), Expect = 2e-08
Identities = 30/93 (32%), Positives = 49/93 (52%)
Frame = +2
Query: 476 GADGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW 655
G G A + ++ R +RPMNAF+++ + R + QE+P++ N +K L W
Sbjct: 22 GGGGNATAAATGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEW 81
Query: 656 AVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCP 754
+L EK+ + D AK + MK +P YK+ P
Sbjct: 82 KLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 114
>ref|NP_808421.1| transcription factor SOX-21 [Mus musculus].
Length = 276
Score = 59.3 bits (142), Expect = 2e-08
Identities = 32/99 (32%), Positives = 50/99 (50%)
Frame = +2
Query: 527 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 706
P +RPMNAF+++ + R + QE+P++ N +K L W +L EK+ + D AK
Sbjct: 4 PVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKR 63
Query: 707 YKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFP 823
+ MK +P YK+ P P +K +AFP
Sbjct: 64 LRAMHMKEHPDYKYRPRRK-------PKTLLKKDKFAFP 95
>ref|NP_033259.2| transcription factor SOX-1 [Mus musculus].
Length = 391
Score = 59.3 bits (142), Expect = 2e-08
Identities = 27/75 (36%), Positives = 44/75 (58%)
Frame = +2
Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
+ R +RPMNAF+++ + R + QE+P++ N +K L W V+ EK+ + D AK
Sbjct: 48 QDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRL 107
Query: 710 KDAFMKANPGYKWCP 754
+ MK +P YK+ P
Sbjct: 108 RALHMKEHPDYKYRP 122
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 111,104,331
Number of extensions: 2878658
Number of successful extensions: 12153
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 12020
Number of HSP's successfully gapped: 24
Length of query: 1178
Length of database: 15,617,559
Length adjustment: 113
Effective length of query: 1065
Effective length of database: 12,223,491
Effective search space: 13018017915
Effective search space used: 13018017915
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002218
(3534 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361467.1| PREDICTED: HMG box transcription factor BBX-... 1670 0.0
Alignment gi|XP_003361468.1| PREDICTED: HMG box transcription factor BBX-... 1592 0.0
Alignment gi|XP_003358873.1| PREDICTED: HMG box transcription factor BBX-... 1234 0.0
Alignment gi|XP_003132735.2| PREDICTED: HMG box transcription factor BBX-... 541 e-154
Alignment gi|XP_003355979.1| PREDICTED: protein capicua homolog [Sus scro... 112 2e-24
Alignment gi|XP_003359100.1| PREDICTED: transcription factor SOX-7 [Sus s... 65 3e-10
Alignment gi|XP_001928411.1| PREDICTED: transcription factor SOX-17-like ... 61 5e-09
Alignment gi|XP_003131095.1| PREDICTED: transcription factor SOX-21-like ... 59 1e-08
Alignment gi|NP_001116669.1| transcription factor SOX-2 [Sus scrofa]. 59 2e-08
Alignment gi|XP_003360512.1| PREDICTED: transcription factor SOX-3-like [... 56 2e-07
>ref|XP_003361467.1| PREDICTED: HMG box transcription factor BBX-like isoform 1 [Sus
scrofa].
Length = 941
Score = 1670 bits (4325), Expect = 0.0
Identities = 840/941 (89%), Positives = 840/941 (89%)
Frame = +2
Query: 302 MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFS IDKVQLLGA
Sbjct: 1 MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60
Query: 482 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120
Query: 662 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 121 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 180
Query: 842 LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR
Sbjct: 181 LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 240
Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL
Sbjct: 241 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 300
Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA
Sbjct: 301 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 360
Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS
Sbjct: 361 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 420
Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
DVPSRKDHLCHPHGIMIIEDPTTLN MDRHGNDKSTPKKTCKKRQSSE
Sbjct: 421 DVPSRKDHLCHPHGIMIIEDPTTLNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSE 480
Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDA
Sbjct: 481 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSK 540
Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
PPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH
Sbjct: 541 EKSSDTTKESRPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 600
Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVD D EGCWNEESW
Sbjct: 601 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESW 660
Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
TFNQIGTSGS EDSLLGSTKLDEEFEKKFNSLPQYSPVTFD
Sbjct: 661 TFNQIGTSGSKKFKKTKPKEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDRKCVPVPRKKK 720
Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
TGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI
Sbjct: 721 KTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 780
Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 781 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 840
Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMP
Sbjct: 841 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPAVSAFFSLA 900
Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 901 ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 941
>ref|XP_003361468.1| PREDICTED: HMG box transcription factor BBX-like isoform 2 [Sus
scrofa].
Length = 911
Score = 1592 bits (4121), Expect = 0.0
Identities = 810/941 (86%), Positives = 810/941 (86%)
Frame = +2
Query: 302 MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFS IDKVQLLGA
Sbjct: 1 MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60
Query: 482 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120
Query: 662 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 121 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 180
Query: 842 LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR
Sbjct: 181 LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 240
Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL
Sbjct: 241 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 300
Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA
Sbjct: 301 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 360
Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS
Sbjct: 361 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 420
Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
DVPSRKDHLCHPHGIMIIEDPTTLN MDRHGNDKSTPKKTCKKRQSSE
Sbjct: 421 DVPSRKDHLCHPHGIMIIEDPTTLNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSE 480
Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDA
Sbjct: 481 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSK 540
Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
PPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH
Sbjct: 541 EKSSDTTKESRPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 600
Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVD D EGCWNEESW
Sbjct: 601 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESW 660
Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
TFNQIGTSGS EDSLLGSTKLDEEFEKKFNSLPQYSPVTFD
Sbjct: 661 TFNQIGTSGSKKFKKTKPKEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDRKCVPVPRKKK 720
Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
TGSMSSEPTKTS KGSGDKWSNKQFFLDAI
Sbjct: 721 KTGSMSSEPTKTS------------------------------KGSGDKWSNKQFFLDAI 750
Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 751 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 810
Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMP
Sbjct: 811 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPAVSAFFSLA 870
Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 871 ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 911
>ref|XP_003358873.1| PREDICTED: HMG box transcription factor BBX-like, partial [Sus
scrofa].
Length = 718
Score = 1234 bits (3193), Expect = 0.0
Identities = 628/718 (87%), Positives = 628/718 (87%)
Frame = +2
Query: 971 ISSGTCRPDVSESSELRQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQL 1150
ISSGTCRPDVSESSELRQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQL
Sbjct: 1 ISSGTCRPDVSESSELRQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQL 60
Query: 1151 GGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKME 1330
GGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKME
Sbjct: 61 GGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKME 120
Query: 1331 KPDEARLQKEADVEKSAKENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKC 1510
KPDEARLQKEADVEKSAKENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKC
Sbjct: 121 KPDEARLQKEADVEKSAKENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKC 180
Query: 1511 SHFPDFSYSASSKIIISDVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHG 1690
SHFPDFSYSASSKIIISDVPSRKDHLCHPHGIMIIEDPTTLN MDRHG
Sbjct: 181 SHFPDFSYSASSKIIISDVPSRKDHLCHPHGIMIIEDPTTLNKPEKLKKKKKKSKMDRHG 240
Query: 1691 NDKSTPKKTCKKRQSSESDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILD 1870
NDKSTPKKTCKKRQSSESDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILD
Sbjct: 241 NDKSTPKKTCKKRQSSESDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILD 300
Query: 1871 AXXXXXXXXXXXXXXXXXXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDA 2050
A PPDFLSISASKNIPGEVPEGIKAEPLTPTEDA
Sbjct: 301 AKPPKKKVKSREKKMSKEKSSDTTKESRPPDFLSISASKNIPGEVPEGIKAEPLTPTEDA 360
Query: 2051 LPPSLPGQAKPEDSDCHRKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXX 2230
LPPSLPGQAKPEDSDCHRKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVD
Sbjct: 361 LPPSLPGQAKPEDSDCHRKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSS 420
Query: 2231 XXXXXXDQEGCWNEESWTFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQY 2410
D EGCWNEESWTFNQIGTSGS EDSLLGSTKLDEEFEKKFNSLPQY
Sbjct: 421 GKGNSSDHEGCWNEESWTFNQIGTSGSKKFKKTKPKEDSLLGSTKLDEEFEKKFNSLPQY 480
Query: 2411 SPVTFDXXXXXXXXXXXXTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPE 2590
SPVTFD TGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPE
Sbjct: 481 SPVTFDRKCVPVPRKKKKTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPE 540
Query: 2591 KGSGDKWSNKQFFLDAIHPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQ 2770
KGSGDKWSNKQFFLDAIHPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQ
Sbjct: 541 KGSGDKWSNKQFFLDAIHPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQ 600
Query: 2771 KRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAET 2950
KRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAET
Sbjct: 601 KRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAET 660
Query: 2951 RSSTPEMPXXXXXXXXXXXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
RSSTPEMP MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 661 RSSTPEMPAVSAFFSLAALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 718
>ref|XP_003132735.2| PREDICTED: HMG box transcription factor BBX-like [Sus scrofa].
Length = 408
Score = 541 bits (1395), Expect = e-154
Identities = 264/275 (96%), Positives = 264/275 (96%)
Frame = +2
Query: 302 MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFS IDKVQLLGA
Sbjct: 1 MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60
Query: 482 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61 DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120
Query: 662 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 121 LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 180
Query: 842 LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR
Sbjct: 181 LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 240
Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAE 1126
QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAE
Sbjct: 241 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAE 275
>ref|XP_003355979.1| PREDICTED: protein capicua homolog [Sus scrofa].
Length = 788
Score = 112 bits (279), Expect = 2e-24
Identities = 87/285 (30%), Positives = 128/285 (44%), Gaps = 16/285 (5%)
Frame = +2
Query: 461 KVQLLGADGLEQDVAETEDDESPEQRA----RRPMNAFLLFCKRHRSLVRQEHPRLDNRG 628
+ Q L A E+D + +D SP +R RRPMNAF++F KRHR+LV Q HP DNR
Sbjct: 441 RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT 500
Query: 629 ATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKK 808
+KIL +WW L PKEKQKY D+A + K+A KA+P +KWC NK K + P
Sbjct: 501 VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWC---NKDRKKSSSEAKPTSL 557
Query: 809 LWAFPSDSSRDLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLA-GEHALGTPEISS-- 979
A +R+ S +T T P ++ + T LS A G + G + +
Sbjct: 558 GLAGGHKETRE-RSMSETGTAAAPGVSSELLSVTAQTLLSSDTKAPGSASCGAERLHTVG 616
Query: 980 --GTCRPDVSESSELR-------QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEIS 1132
G+ RP S + L + ++ S + P Q A FA
Sbjct: 617 GPGSARPRAFSHSGVHGLDGGEVDSQALQELTQMVSGPASYSGPKPSTQYGAPGPFATPG 676
Query: 1133 SNTSQLGGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKE 1267
+ P +++ Q A ASE + +E +++ +E
Sbjct: 677 EGGNLAASGRPPLLPTRASRSQRA----ASEDMTSDEERMVICEE 717
>ref|XP_003359100.1| PREDICTED: transcription factor SOX-7 [Sus scrofa].
Length = 389
Score = 65.1 bits (157), Expect = 3e-10
Identities = 51/173 (29%), Positives = 72/173 (41%), Gaps = 10/173 (5%)
Frame = +2
Query: 479 ADGLEQDVA-ETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW 655
+DGL A D+ E R RRPMNAF+++ K R + ++P L N +K+L W
Sbjct: 24 SDGLSPPAAPRPPGDKGSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSW 83
Query: 656 AVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSS 835
L +K+ Y D A+ + M+ P YK+ P K K V+P L + D +
Sbjct: 84 KALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKRLCKRVDPGFLLSSLSRDQN 143
Query: 836 ---------RDLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTP 967
R P K+ + E P G A P G G GTP
Sbjct: 144 ALPEKRSGGRGAPGEKEDRGEYSP----GSALPGLRGCFHEGPAGGSGGGGTP 192
>ref|XP_001928411.1| PREDICTED: transcription factor SOX-17-like [Sus scrofa].
Length = 407
Score = 60.8 bits (146), Expect = 5e-09
Identities = 30/82 (36%), Positives = 46/82 (56%)
Frame = +2
Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
E R RRPMNAF+++ K R + Q++P L N +K+L W L EK+ + + A+
Sbjct: 65 ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERL 124
Query: 710 KDAFMKANPGYKWCPTTNKPVK 775
+ M+ +P YK+ P K VK
Sbjct: 125 RVQHMQDHPNYKYRPRRRKQVK 146
>ref|XP_003131095.1| PREDICTED: transcription factor SOX-21-like [Sus scrofa].
Length = 276
Score = 59.3 bits (142), Expect = 1e-08
Identities = 32/99 (32%), Positives = 50/99 (50%)
Frame = +2
Query: 527 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 706
P +RPMNAF+++ + R + QE+P++ N +K L W +L EK+ + D AK
Sbjct: 4 PVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKR 63
Query: 707 YKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFP 823
+ MK +P YK+ P P +K +AFP
Sbjct: 64 LRAMHMKEHPDYKYRPRRK-------PKTLLKKDKFAFP 95
>ref|NP_001116669.1| transcription factor SOX-2 [Sus scrofa].
Length = 319
Score = 58.9 bits (141), Expect = 2e-08
Identities = 29/93 (31%), Positives = 49/93 (52%)
Frame = +2
Query: 476 GADGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW 655
G G A + ++ R +RPMNAF+++ + R + QE+P++ N ++ L W
Sbjct: 22 GGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISRRLGAEW 81
Query: 656 AVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCP 754
+L EK+ + D AK + MK +P YK+ P
Sbjct: 82 KLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 114
>ref|XP_003360512.1| PREDICTED: transcription factor SOX-3-like [Sus scrofa].
Length = 448
Score = 55.8 bits (133), Expect = 2e-07
Identities = 27/77 (35%), Positives = 43/77 (55%)
Frame = +2
Query: 524 SPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAK 703
S + R +RPMNAF+++ + R + E+P++ N +K L W +L EK+ + D AK
Sbjct: 137 SDQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAK 196
Query: 704 EYKDAFMKANPGYKWCP 754
+ MK P YK+ P
Sbjct: 197 RLRAVHMKEYPDYKYRP 213
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 81,746,725
Number of extensions: 2163048
Number of successful extensions: 8091
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 8023
Number of HSP's successfully gapped: 22
Length of query: 1178
Length of database: 11,343,932
Length adjustment: 110
Effective length of query: 1068
Effective length of database: 8,605,262
Effective search space: 9190419816
Effective search space used: 9190419816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002218
(3534 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118763.1| Sus scrofa unplaced genomic scaffold ChrUScaf2282 1072 0.0
Sscrofa_Chr13 1072 0.0
>gb|JH118763.1| Sus scrofa unplaced genomic scaffold ChrUScaf2282
Length = 217678
Score = 1072 bits (541), Expect = 0.0
Identities = 541/541 (100%)
Strand = Plus / Plus
Query: 1677 tggatcgacatggaaatgataaatccacacccaagaagacttgtaaaaagaggcagtcct 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98924 tggatcgacatggaaatgataaatccacacccaagaagacttgtaaaaagaggcagtcct 98983
Query: 1737 cagagtctgacattgagagtgtcatatacaccattgaagctgttgcaaagggagactggg 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98984 cagagtctgacattgagagtgtcatatacaccattgaagctgttgcaaagggagactggg 99043
Query: 1797 gcatcgagaagcttggagaaacccctcgcaagaaggtccgcacatcctccagtggcaagg 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99044 gcatcgagaagcttggagaaacccctcgcaagaaggtccgcacatcctccagtggcaagg 99103
Query: 1857 gaagcattttggatgccaagccaccaaagaaaaaagtgaaatccagagagaagaaaatgt 1916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99104 gaagcattttggatgccaagccaccaaagaaaaaagtgaaatccagagagaagaaaatgt 99163
Query: 1917 caaaggagaaatcctcggacaccaccaaagagtcgagacctccagattttctcagtattt 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99164 caaaggagaaatcctcggacaccaccaaagagtcgagacctccagattttctcagtattt 99223
Query: 1977 ctgccagcaagaacattcctggggaggtgccagagggtataaaagcagaaccgttgaccc 2036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99224 ctgccagcaagaacattcctggggaggtgccagagggtataaaagcagaaccgttgaccc 99283
Query: 2037 ccacggaggatgcgctaccacccagcctacctggacaggccaagcctgaggacagtgact 2096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99284 ccacggaggatgcgctaccacccagcctacctggacaggccaagcctgaggacagtgact 99343
Query: 2097 gtcacagaaaaatagagacttgtggcttccggaaatccgagaggtcttgcaaaggtgctc 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99344 gtcacagaaaaatagagacttgtggcttccggaaatccgagaggtcttgcaaaggtgctc 99403
Query: 2157 tttataaaaccctggtgtctgagggcatgctcacctctctgcgagctaatgttgacagag 2216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99404 tttataaaaccctggtgtctgagggcatgctcacctctctgcgagctaatgttgacagag 99463
Query: 2217 g 2217
|
Sbjct: 99464 g 99464
Score = 914 bits (461), Expect = 0.0
Identities = 470/473 (99%)
Strand = Plus / Plus
Query: 3036 acagaggtcagaggtcaactccgctcacccatgatggacagccaaaagagatgccacagg 3095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129494 acagaggtcagaggtcaactccgctcacccatgatggacagccaaaagagatgccacagg 129553
Query: 3096 ctcctgtacttatttcctgtgctgaccagtgaagcgccctttaattgtaaaacattgtgc 3155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129554 ctcctgtacttatttcctgtgctgaccagtgaagcgccctttaattgtaaaacattgtgc 129613
Query: 3156 tttacctactaccctagccttgtctttacagagggatgctagtgagtccatgtggtggaa 3215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129614 tttacctactaccctagccttgtctttacagagggatgctagtgagtccatgtggtggaa 129673
Query: 3216 aatacagactgcaaacaagtgcttgttgccccacacggcccagattcacttgacgcagaa 3275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129674 aatacagactgcaaacaagtgcttgttgccccacacggcccagattcacttgacgcagaa 129733
Query: 3276 gttggcatcctgggccagtttgttctttcagagccctgagtctttgagggtgatgttctt 3335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129734 gttggcatcctgggccagtttgttctttcagagccctgagtctttgagggtgatgttctt 129793
Query: 3336 tgtctgataatgagcagaaacgggataatcctagagctttgcttcctattgaaggctttt 3395
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 129794 tgtctgataatgagcagaaacgggataatcctagagctttgctttctattgaaggctttt 129853
Query: 3396 gatggtaataggtggtaacttggtaaaaggctgcctttactgtagctcatccagcacctc 3455
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 129854 gatggtaataggtggtaacttggtaaaaggctgcctttactgtagctcatccagcatctc 129913
Query: 3456 ttttaccaaccagagagcgtgaaactagtttcgtatattacctagttattctt 3508
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 129914 ttttaccaaccagagagtgtgaaactagtttcgtatattacctagttattctt 129966
Score = 611 bits (308), Expect = e-171
Identities = 308/308 (100%)
Strand = Plus / Plus
Query: 1334 ccagatgaggccaggttacagaaagaagcagatgttgaaaaatcagccaaggaaaatgga 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98581 ccagatgaggccaggttacagaaagaagcagatgttgaaaaatcagccaaggaaaatgga 98640
Query: 1394 agagattctaaagaattaagaaattttgaggagctgcgaatggatgatataatgggaata 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98641 agagattctaaagaattaagaaattttgaggagctgcgaatggatgatataatgggaata 98700
Query: 1454 aaaatggaagatcccaaagatattaaaaaggaagaattagaggaagatcaaaaatgtagt 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98701 aaaatggaagatcccaaagatattaaaaaggaagaattagaggaagatcaaaaatgtagt 98760
Query: 1514 cacttccctgacttttcttactctgccagtagcaagataataataagtgatgttcccagt 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98761 cacttccctgacttttcttactctgccagtagcaagataataataagtgatgttcccagt 98820
Query: 1574 agaaaagatcatttgtgccatcctcatggaattatgatcattgaggatcccaccacactt 1633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98821 agaaaagatcatttgtgccatcctcatggaattatgatcattgaggatcccaccacactt 98880
Query: 1634 aacaagcc 1641
||||||||
Sbjct: 98881 aacaagcc 98888
Score = 486 bits (245), Expect = e-134
Identities = 245/245 (100%)
Strand = Plus / Plus
Query: 462 aggttcagcttcttggggctgatggcctagagcaagatgttgctgagactgaagatgatg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48615 aggttcagcttcttggggctgatggcctagagcaagatgttgctgagactgaagatgatg 48674
Query: 522 aatcaccagaacagcgagcccggagaccaatgaatgcatttctcttattttgcaaacgtc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48675 aatcaccagaacagcgagcccggagaccaatgaatgcatttctcttattttgcaaacgtc 48734
Query: 582 atcgctcccttgtacgtcaagaacaccccagacttgataacagaggtgctaccaagatac 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48735 atcgctcccttgtacgtcaagaacaccccagacttgataacagaggtgctaccaagatac 48794
Query: 642 tagctgattggtgggctgttctcgatccaaaggaaaagcagaaatacacagacatggcca 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48795 tagctgattggtgggctgttctcgatccaaaggaaaagcagaaatacacagacatggcca 48854
Query: 702 aggag 706
|||||
Sbjct: 48855 aggag 48859
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 2653 agccatattttcagaagacaaaaacaccacagagcctgcttataaggttaaaaatgcccc 2712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122325 agccatattttcagaagacaaaaacaccacagagcctgcttataaggttaaaaatgcccc 122384
Query: 2713 atccattcccaacactccagagccaacaacaatgcaagaacctttggtgggcagccaaaa 2772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122385 atccattcccaacactccagagccaacaacaatgcaagaacctttggtgggcagccaaaa 122444
Query: 2773 gagaaaagcaaggaaaaccaagatcacacaccttgtcaggacggcagatggccgggtatc 2832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122445 gagaaaagcaaggaaaaccaagatcacacaccttgtcaggacggcagatggccgggtatc 122504
Query: 2833 accagcaggaggtactttgg 2852
||||||||||||||||||||
Sbjct: 122505 accagcaggaggtactttgg 122524
Score = 365 bits (184), Expect = 1e-97
Identities = 187/188 (99%)
Strand = Plus / Plus
Query: 2852 gatgacaaaccaaaggaacaactgcagaggagtctccctaaagtgaccgaggcaggctgc 2911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124552 gatgacaaaccaaaggaacaactgcagaggagtctccctaaagtgaccgaggcaggctgc 124611
Query: 2912 aatgatgaatgctcgcacaaccgggaggccgcggagacgcgcagcagcaccccggagatg 2971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124612 aatgatgaatgctcgcacaaccgggaggccgcggagacgcgcagcagcaccccggagatg 124671
Query: 2972 ccagctgtgtctgccttcttcagcctcgcggcactggctaaggtggctgccatggaaaat 3031
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 124672 ccagctgtgtctgccttcttcagcctcgcggcactggctgaggtggctgccatggaaaat 124731
Query: 3032 gtgcacag 3039
||||||||
Sbjct: 124732 gtgcacag 124739
Score = 272 bits (137), Expect = 1e-69
Identities = 140/141 (99%)
Strand = Plus / Plus
Query: 2215 agggaaacgaagctcaggaaaaggaaactcttctgatcaggaagggtgttggaatgagga 2274
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 100428 agggaaacgaagctcaggaaaaggaaactcttctgatcacgaagggtgttggaatgagga 100487
Query: 2275 aagttggacgttcaaccagattgggaccagtggaagtaagaagttcaagaagacaaagcc 2334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100488 aagttggacgttcaaccagattgggaccagtggaagtaagaagttcaagaagacaaagcc 100547
Query: 2335 aaaggaagactctctccttgg 2355
|||||||||||||||||||||
Sbjct: 100548 aaaggaagactctctccttgg 100568
Score = 256 bits (129), Expect = 7e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 292 ggtcacagtaatgaaaggcagtaatagaaataaagatcattcagcagaaggagaaggggc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42684 ggtcacagtaatgaaaggcagtaatagaaataaagatcattcagcagaaggagaaggggc 42743
Query: 352 tggaaaacgaccaaaacgaaagtgtcttcagtggcatccattgctcgcaaaaaaacttct 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42744 tggaaaacgaccaaaacgaaagtgtcttcagtggcatccattgctcgcaaaaaaacttct 42803
Query: 412 tgatttttc 420
|||||||||
Sbjct: 42804 tgatttttc 42812
Score = 230 bits (116), Expect = 4e-57
Identities = 140/152 (92%)
Strand = Plus / Plus
Query: 2355 gctcaacaaagctggatgaagaatttgaaaagaaattcaacagcctccctcaatatagtc 2414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104153 gctcaacaaagctggatgaagaatttgaaaagaaattcaacagcctccctcaatatagtc 104212
Query: 2415 ctgttacatttgaccggaaatgtgtacctgtcccaagnnnnnnnnnnnngacaggcagca 2474
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 104213 ctgttacatttgaccggaaatgtgtacctgtcccaagaaaaaagaaaaagacaggcagca 104272
Query: 2475 tgtcctcagaaccaactaaaaccagcaaaggt 2506
||||||||||||||||||||||||||||||||
Sbjct: 104273 tgtcctcagaaccaactaaaaccagcaaaggt 104304
Score = 184 bits (93), Expect = 2e-43
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 2503 aggtcctttccagtctcagaaaaagaacttattccacaaaattgtcagcaaatataagca 2562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112884 aggtcctttccagtctcagaaaaagaacttattccacaaaattgtcagcaaatataagca 112943
Query: 2563 caaaaaggagaagcctaatgttccggaaaaagg 2595
|||||||||||||||||||||||||||||||||
Sbjct: 112944 caaaaaggagaagcctaatgttccggaaaaagg 112976
Score = 165 bits (83), Expect = 2e-37
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 969 agatatcttctggcacttgtaggcctgatgtttcagaatcatctgaattgcgtcagaagt 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75050 agatatcttctggcacttgtaggcctgatgtttcagaatcatctgaattgcgtcagaagt 75109
Query: 1029 caccattatttcagtttgctgag 1051
|||||||||||||||||||||||
Sbjct: 75110 caccattatttcagtttgctgag 75132
Score = 165 bits (83), Expect = 2e-37
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1125 agatttcttcaaacacttcacagttgggtggtgctgaacctgtaaaacgctgtggaaagt 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86011 agatttcttcaaacacttcacagttgggtggtgctgaacctgtaaaacgctgtggaaagt 86070
Query: 1185 ctgcactctttcagctggcagag 1207
|||||||||||||||||||||||
Sbjct: 86071 ctgcactctttcagctggcagag 86093
Score = 153 bits (77), Expect = 8e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1050 agatatcttcaagtacatcccatcctgatgctccttcaaaacagtgtcaagcatcagcct 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78374 agatatcttcaagtacatcccatcctgatgctccttcaaaacagtgtcaagcatcagcct 78433
Query: 1110 tgtttcagtttgcagag 1126
|||||||||||||||||
Sbjct: 78434 tgtttcagtttgcagag 78450
Score = 137 bits (69), Expect = 5e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 902 gatcctactcagatgggaggcctgagcatgctgcttttagctggagaacatgctcttggc 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60149 gatcctactcagatgggaggcctgagcatgctgcttttagctggagaacatgctcttggc 60208
Query: 962 acaccagag 970
|||||||||
Sbjct: 60209 acaccagag 60217
Score = 123 bits (62), Expect = 7e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 2593 aggaagtggggataaatggtcaaacaagcaattcttcttggatgccattcacccaacaga 2652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114444 aggaagtggggataaatggtcaaacaagcaattcttcttggatgccattcacccaacaga 114503
Query: 2653 ag 2654
||
Sbjct: 114504 ag 114505
Score = 97.6 bits (49), Expect = 4e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 1206 agatgtgcctggcatcagagggggtgaaaatggaggaatcaaaactaat 1254
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98453 agatgtgcctggcatcagagggggtgaaaatggaggaatcaaaactaat 98501
>Sscrofa_Chr13
|| Length = 218635234
Score = 1072 bits (541), Expect = 0.0
Identities = 541/541 (100%)
Strand = Plus / Minus
Query: 1677 tggatcgacatggaaatgataaatccacacccaagaagacttgtaaaaagaggcagtcct 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790425 tggatcgacatggaaatgataaatccacacccaagaagacttgtaaaaagaggcagtcct 160790366
Query: 1737 cagagtctgacattgagagtgtcatatacaccattgaagctgttgcaaagggagactggg 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790365 cagagtctgacattgagagtgtcatatacaccattgaagctgttgcaaagggagactggg 160790306
Query: 1797 gcatcgagaagcttggagaaacccctcgcaagaaggtccgcacatcctccagtggcaagg 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790305 gcatcgagaagcttggagaaacccctcgcaagaaggtccgcacatcctccagtggcaagg 160790246
Query: 1857 gaagcattttggatgccaagccaccaaagaaaaaagtgaaatccagagagaagaaaatgt 1916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790245 gaagcattttggatgccaagccaccaaagaaaaaagtgaaatccagagagaagaaaatgt 160790186
Query: 1917 caaaggagaaatcctcggacaccaccaaagagtcgagacctccagattttctcagtattt 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790185 caaaggagaaatcctcggacaccaccaaagagtcgagacctccagattttctcagtattt 160790126
Query: 1977 ctgccagcaagaacattcctggggaggtgccagagggtataaaagcagaaccgttgaccc 2036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790125 ctgccagcaagaacattcctggggaggtgccagagggtataaaagcagaaccgttgaccc 160790066
Query: 2037 ccacggaggatgcgctaccacccagcctacctggacaggccaagcctgaggacagtgact 2096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790065 ccacggaggatgcgctaccacccagcctacctggacaggccaagcctgaggacagtgact 160790006
Query: 2097 gtcacagaaaaatagagacttgtggcttccggaaatccgagaggtcttgcaaaggtgctc 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790005 gtcacagaaaaatagagacttgtggcttccggaaatccgagaggtcttgcaaaggtgctc 160789946
Query: 2157 tttataaaaccctggtgtctgagggcatgctcacctctctgcgagctaatgttgacagag 2216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160789945 tttataaaaccctggtgtctgagggcatgctcacctctctgcgagctaatgttgacagag 160789886
Query: 2217 g 2217
|
Sbjct: 160789885 g 160789885
Score = 914 bits (461), Expect = 0.0
Identities = 470/473 (99%)
Strand = Plus / Minus
Query: 3036 acagaggtcagaggtcaactccgctcacccatgatggacagccaaaagagatgccacagg 3095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160759402 acagaggtcagaggtcaactccgctcacccatgatggacagccaaaagagatgccacagg 160759343
Query: 3096 ctcctgtacttatttcctgtgctgaccagtgaagcgccctttaattgtaaaacattgtgc 3155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160759342 ctcctgtacttatttcctgtgctgaccagtgaagcgccctttaattgtaaaacattgtgc 160759283
Query: 3156 tttacctactaccctagccttgtctttacagagggatgctagtgagtccatgtggtggaa 3215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160759282 tttacctactaccctagccttgtctttacagagggatgctagtgagtccatgtggtggaa 160759223
Query: 3216 aatacagactgcaaacaagtgcttgttgccccacacggcccagattcacttgacgcagaa 3275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160759222 aatacagactgcaaacaagtgcttgttgccccacacggcccagattcacttgacgcagaa 160759163
Query: 3276 gttggcatcctgggccagtttgttctttcagagccctgagtctttgagggtgatgttctt 3335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160759162 gttggcatcctgggccagtttgttctttcagagccctgagtctttgagggtgatgttctt 160759103
Query: 3336 tgtctgataatgagcagaaacgggataatcctagagctttgcttcctattgaaggctttt 3395
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 160759102 tgtctgataatgagcagaaacgggataatcctagagctttgctttctattgaaggctttt 160759043
Query: 3396 gatggtaataggtggtaacttggtaaaaggctgcctttactgtagctcatccagcacctc 3455
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 160759042 gatggtaataggtggtaacttggtaaaaggctgcctttactgtagctcatccagcatctc 160758983
Query: 3456 ttttaccaaccagagagcgtgaaactagtttcgtatattacctagttattctt 3508
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 160758982 ttttaccaaccagagagtgtgaaactagtttcgtatattacctagttattctt 160758930
Score = 611 bits (308), Expect = e-171
Identities = 308/308 (100%)
Strand = Plus / Minus
Query: 1334 ccagatgaggccaggttacagaaagaagcagatgttgaaaaatcagccaaggaaaatgga 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790768 ccagatgaggccaggttacagaaagaagcagatgttgaaaaatcagccaaggaaaatgga 160790709
Query: 1394 agagattctaaagaattaagaaattttgaggagctgcgaatggatgatataatgggaata 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790708 agagattctaaagaattaagaaattttgaggagctgcgaatggatgatataatgggaata 160790649
Query: 1454 aaaatggaagatcccaaagatattaaaaaggaagaattagaggaagatcaaaaatgtagt 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790648 aaaatggaagatcccaaagatattaaaaaggaagaattagaggaagatcaaaaatgtagt 160790589
Query: 1514 cacttccctgacttttcttactctgccagtagcaagataataataagtgatgttcccagt 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790588 cacttccctgacttttcttactctgccagtagcaagataataataagtgatgttcccagt 160790529
Query: 1574 agaaaagatcatttgtgccatcctcatggaattatgatcattgaggatcccaccacactt 1633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790528 agaaaagatcatttgtgccatcctcatggaattatgatcattgaggatcccaccacactt 160790469
Query: 1634 aacaagcc 1641
||||||||
Sbjct: 160790468 aacaagcc 160790461
Score = 486 bits (245), Expect = e-134
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 462 aggttcagcttcttggggctgatggcctagagcaagatgttgctgagactgaagatgatg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160868707 aggttcagcttcttggggctgatggcctagagcaagatgttgctgagactgaagatgatg 160868648
Query: 522 aatcaccagaacagcgagcccggagaccaatgaatgcatttctcttattttgcaaacgtc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160868647 aatcaccagaacagcgagcccggagaccaatgaatgcatttctcttattttgcaaacgtc 160868588
Query: 582 atcgctcccttgtacgtcaagaacaccccagacttgataacagaggtgctaccaagatac 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160868587 atcgctcccttgtacgtcaagaacaccccagacttgataacagaggtgctaccaagatac 160868528
Query: 642 tagctgattggtgggctgttctcgatccaaaggaaaagcagaaatacacagacatggcca 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160868527 tagctgattggtgggctgttctcgatccaaaggaaaagcagaaatacacagacatggcca 160868468
Query: 702 aggag 706
|||||
Sbjct: 160868467 aggag 160868463
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Minus
Query: 2653 agccatattttcagaagacaaaaacaccacagagcctgcttataaggttaaaaatgcccc 2712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160766474 agccatattttcagaagacaaaaacaccacagagcctgcttataaggttaaaaatgcccc 160766415
Query: 2713 atccattcccaacactccagagccaacaacaatgcaagaacctttggtgggcagccaaaa 2772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160766414 atccattcccaacactccagagccaacaacaatgcaagaacctttggtgggcagccaaaa 160766355
Query: 2773 gagaaaagcaaggaaaaccaagatcacacaccttgtcaggacggcagatggccgggtatc 2832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160766354 gagaaaagcaaggaaaaccaagatcacacaccttgtcaggacggcagatggccgggtatc 160766295
Query: 2833 accagcaggaggtactttgg 2852
||||||||||||||||||||
Sbjct: 160766294 accagcaggaggtactttgg 160766275
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Minus
Query: 705 agtataaagatgcatttatgaaagcaaatcctggctacaaatggtgtcctaccacaaaca 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160860541 agtataaagatgcatttatgaaagcaaatcctggctacaaatggtgtcctaccacaaaca 160860482
Query: 765 agcctgtcaaatccccaacacccactgtcaatccacgaaagaaactgtgggccttcccat 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160860481 agcctgtcaaatccccaacacccactgtcaatccacgaaagaaactgtgggccttcccat 160860422
Query: 825 ccgactcttcaagagacttgccaagccccaagaaaacaaagactgaagaaatgcctcagc 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160860421 ccgactcttcaagagacttgccaagccccaagaaaacaaagactgaagaaatgcctcagc 160860362
Query: 885 ttaactttggaatggccg 902
||||||||||||||||||
Sbjct: 160860361 ttaactttggaatggccg 160860344
Score = 365 bits (184), Expect = 1e-97
Identities = 187/188 (99%)
Strand = Plus / Minus
Query: 2852 gatgacaaaccaaaggaacaactgcagaggagtctccctaaagtgaccgaggcaggctgc 2911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160764247 gatgacaaaccaaaggaacaactgcagaggagtctccctaaagtgaccgaggcaggctgc 160764188
Query: 2912 aatgatgaatgctcgcacaaccgggaggccgcggagacgcgcagcagcaccccggagatg 2971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160764187 aatgatgaatgctcgcacaaccgggaggccgcggagacgcgcagcagcaccccggagatg 160764128
Query: 2972 ccagctgtgtctgccttcttcagcctcgcggcactggctaaggtggctgccatggaaaat 3031
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 160764127 ccagctgtgtctgccttcttcagcctcgcggcactggctgaggtggctgccatggaaaat 160764068
Query: 3032 gtgcacag 3039
||||||||
Sbjct: 160764067 gtgcacag 160764060
Score = 272 bits (137), Expect = 1e-69
Identities = 140/141 (99%)
Strand = Plus / Minus
Query: 2215 agggaaacgaagctcaggaaaaggaaactcttctgatcaggaagggtgttggaatgagga 2274
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 160788921 agggaaacgaagctcaggaaaaggaaactcttctgatcacgaagggtgttggaatgagga 160788862
Query: 2275 aagttggacgttcaaccagattgggaccagtggaagtaagaagttcaagaagacaaagcc 2334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160788861 aagttggacgttcaaccagattgggaccagtggaagtaagaagttcaagaagacaaagcc 160788802
Query: 2335 aaaggaagactctctccttgg 2355
|||||||||||||||||||||
Sbjct: 160788801 aaaggaagactctctccttgg 160788781
Score = 256 bits (129), Expect = 7e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 292 ggtcacagtaatgaaaggcagtaatagaaataaagatcattcagcagaaggagaaggggc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160875288 ggtcacagtaatgaaaggcagtaatagaaataaagatcattcagcagaaggagaaggggc 160875229
Query: 352 tggaaaacgaccaaaacgaaagtgtcttcagtggcatccattgctcgcaaaaaaacttct 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160875228 tggaaaacgaccaaaacgaaagtgtcttcagtggcatccattgctcgcaaaaaaacttct 160875169
Query: 412 tgatttttc 420
|||||||||
Sbjct: 160875168 tgatttttc 160875160
Score = 230 bits (116), Expect = 4e-57
Identities = 140/152 (92%)
Strand = Plus / Minus
Query: 2355 gctcaacaaagctggatgaagaatttgaaaagaaattcaacagcctccctcaatatagtc 2414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160785028 gctcaacaaagctggatgaagaatttgaaaagaaattcaacagcctccctcaatatagtc 160784969
Query: 2415 ctgttacatttgaccggaaatgtgtacctgtcccaagnnnnnnnnnnnngacaggcagca 2474
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 160784968 ctgttacatttgaccggaaatgtgtacctgtcccaagaaaaaagaaaaagacaggcagca 160784909
Query: 2475 tgtcctcagaaccaactaaaaccagcaaaggt 2506
||||||||||||||||||||||||||||||||
Sbjct: 160784908 tgtcctcagaaccaactaaaaccagcaaaggt 160784877
Score = 184 bits (93), Expect = 2e-43
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 2503 aggtcctttccagtctcagaaaaagaacttattccacaaaattgtcagcaaatataagca 2562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160776080 aggtcctttccagtctcagaaaaagaacttattccacaaaattgtcagcaaatataagca 160776021
Query: 2563 caaaaaggagaagcctaatgttccggaaaaagg 2595
|||||||||||||||||||||||||||||||||
Sbjct: 160776020 caaaaaggagaagcctaatgttccggaaaaagg 160775988
Score = 165 bits (83), Expect = 2e-37
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 1125 agatttcttcaaacacttcacagttgggtggtgctgaacctgtaaaacgctgtggaaagt 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160806417 agatttcttcaaacacttcacagttgggtggtgctgaacctgtaaaacgctgtggaaagt 160806358
Query: 1185 ctgcactctttcagctggcagag 1207
|||||||||||||||||||||||
Sbjct: 160806357 ctgcactctttcagctggcagag 160806335
Score = 165 bits (83), Expect = 2e-37
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 969 agatatcttctggcacttgtaggcctgatgtttcagaatcatctgaattgcgtcagaagt 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160817173 agatatcttctggcacttgtaggcctgatgtttcagaatcatctgaattgcgtcagaagt 160817114
Query: 1029 caccattatttcagtttgctgag 1051
|||||||||||||||||||||||
Sbjct: 160817113 caccattatttcagtttgctgag 160817091
Score = 153 bits (77), Expect = 8e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 1050 agatatcttcaagtacatcccatcctgatgctccttcaaaacagtgtcaagcatcagcct 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160813849 agatatcttcaagtacatcccatcctgatgctccttcaaaacagtgtcaagcatcagcct 160813790
Query: 1110 tgtttcagtttgcagag 1126
|||||||||||||||||
Sbjct: 160813789 tgtttcagtttgcagag 160813773
Score = 153 bits (77), Expect = 8e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 218 gaatcctgctgcatcacagaagctggaagttctgatgttccattgaaatcacaatggaaa 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160853937 gaatcctgctgcatcacagaagctggaagttctgatgttccattgaaatcacaatggaaa 160853878
Query: 278 gtcttgacttgactggt 294
|||||||||||||||||
Sbjct: 160853877 gtcttgacttgactggt 160853861
Score = 147 bits (74), Expect = 5e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 145 aggtcactaccatatgacaaaggctttgccgcagttcatcttcctctctgtgtactttcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161023676 aggtcactaccatatgacaaaggctttgccgcagttcatcttcctctctgtgtactttcc 161023617
Query: 205 atttgccttcttgg 218
||||||||||||||
Sbjct: 161023616 atttgccttcttgg 161023603
Score = 137 bits (69), Expect = 5e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 902 gatcctactcagatgggaggcctgagcatgctgcttttagctggagaacatgctcttggc 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160856630 gatcctactcagatgggaggcctgagcatgctgcttttagctggagaacatgctcttggc 160856571
Query: 962 acaccagag 970
|||||||||
Sbjct: 160856570 acaccagag 160856562
Score = 123 bits (62), Expect = 7e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 2593 aggaagtggggataaatggtcaaacaagcaattcttcttggatgccattcacccaacaga 2652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160774604 aggaagtggggataaatggtcaaacaagcaattcttcttggatgccattcacccaacaga 160774545
Query: 2653 ag 2654
||
Sbjct: 160774544 ag 160774543
Score = 97.6 bits (49), Expect = 4e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 1206 agatgtgcctggcatcagagggggtgaaaatggaggaatcaaaactaat 1254
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790896 agatgtgcctggcatcagagggggtgaaaatggaggaatcaaaactaat 160790848
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 116,120,125
Number of extensions: 363
Number of successful extensions: 363
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 37
Length of query: 3534
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 3512
Effective length of database: 2,808,408,574
Effective search space: 9863130911888
Effective search space used: 9863130911888
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 19 (38.2 bits)
S2: 30 (60.0 bits)