Animal-Genome cDNA 20110601C-002218


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002218
         (3534 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001179688.1| HMG box transcription factor BBX [Bos taurus].   1585   0.0  
Alignment   gi|XP_002684779.1| PREDICTED: bobby sox homolog (Drosophila) [B...  1585   0.0  
Alignment   gi|NP_001193180.1| transcription factor SOX-17 [Bos taurus].          61   8e-09
Alignment   gi|NP_001069257.1| transcription factor SOX-18 [Bos taurus].          61   8e-09
Alignment   gi|XP_002692695.1| PREDICTED: SRY-box 17-like [Bos taurus].           61   8e-09
Alignment   gi|NP_001157253.1| SRY (sex determining region Y)-box 14 [Bos t...    60   1e-08
Alignment   gi|NP_001098933.1| SRY (sex determining region Y)-box 2 [Bos ta...    60   1e-08
Alignment   gi|XP_002692040.1| PREDICTED: SRY (sex determining region Y)-bo...    59   2e-08
Alignment   gi|XP_875555.1| PREDICTED: SRY (sex determining region Y)-box 1...    59   2e-08
Alignment   gi|XP_002689511.1| PREDICTED: SRY (sex determining region Y)-bo...    57   1e-07

>ref|NP_001179688.1| HMG box transcription factor BBX [Bos taurus].
          Length = 942

 Score = 1585 bits (4105), Expect = 0.0
 Identities = 797/942 (84%), Positives = 816/942 (86%), Gaps = 1/942 (0%)
 Frame = +2

Query: 302  MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
            MKGSNRNKDHSAEGEG GKRPKRKCLQWHPLLAKKLLDFS           IDKVQLLGA
Sbjct: 1    MKGSNRNKDHSAEGEGTGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60

Query: 482  DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
            DGLEQDV ETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61   DGLEQDVGETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120

Query: 662  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPT-VNPRKKLWAFPSDSSR 838
            LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSP PT VNPRKKLWAFPSDSSR
Sbjct: 121  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPAPTTVNPRKKLWAFPSDSSR 180

Query: 839  DLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSEL 1018
            DLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDV ESSEL
Sbjct: 181  DLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVPESSEL 240

Query: 1019 RQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQ 1198
            RQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTS LGGAEPVKRCGKSALFQ
Sbjct: 241  RQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSHLGGAEPVKRCGKSALFQ 300

Query: 1199 LAEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKS 1378
            LAEMCLASEGVKMEESKLI+ KE DGGRIKELEKGKEER+ KMEK DEARLQKEA+ EKS
Sbjct: 301  LAEMCLASEGVKMEESKLIRTKELDGGRIKELEKGKEERDTKMEKTDEARLQKEAEFEKS 360

Query: 1379 AKENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIII 1558
            AKEN RDSKE+RNFEELRMDDI+GIKME PK+IKKEELEEDQKC HFPDFSYSASSKIII
Sbjct: 361  AKENVRDSKEIRNFEELRMDDIIGIKMEAPKEIKKEELEEDQKCGHFPDFSYSASSKIII 420

Query: 1559 SDVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSS 1738
            SDVPSRKDH+CHPHGIMIIEDPT L+             MDRHGNDKSTPKK CKKRQSS
Sbjct: 421  SDVPSRKDHICHPHGIMIIEDPTALSKPEKLKKKKKKNKMDRHGNDKSTPKKACKKRQSS 480

Query: 1739 ESDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXX 1918
            ESDIESV+YTIEAVAKGDWGIEKLG+TPRKKVR SSSGKGSILDA               
Sbjct: 481  ESDIESVMYTIEAVAKGDWGIEKLGDTPRKKVRPSSSGKGSILDAKPPKKKVKSREKKMS 540

Query: 1919 XXXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDC 2098
                        PPDF+SISASKNI GEVPEGIKAEPLTPTEDALPP+L GQAKPEDSDC
Sbjct: 541  KEKSSDPTKESRPPDFISISASKNISGEVPEGIKAEPLTPTEDALPPTLSGQAKPEDSDC 600

Query: 2099 HRKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEES 2278
            HRKIETCG RKSERSCKGALYKTLVSEGMLTSLRANVD            D EGCWNEES
Sbjct: 601  HRKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEES 660

Query: 2279 WTFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXX 2458
            WTF+Q GTSGS         EDS+LGSTKLDEEFEKKFNSLPQYSPVTFD          
Sbjct: 661  WTFSQSGTSGSKKFKKTKPKEDSVLGSTKLDEEFEKKFNSLPQYSPVTFDRKCVPVPRKK 720

Query: 2459 XXTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDA 2638
              TG+MS+EPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWS+KQ FLDA
Sbjct: 721  KKTGNMSAEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSSKQLFLDA 780

Query: 2639 IHPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTA 2818
            IHPTEAIFSEDKNTTEPAYKVKNA SIPNTPEPTT QEPLVGSQKRKARKTKITHLVRTA
Sbjct: 781  IHPTEAIFSEDKNTTEPAYKVKNALSIPNTPEPTTTQEPLVGSQKRKARKTKITHLVRTA 840

Query: 2819 DGRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXX 2998
            DGRVSPAGGTLDDKP+EQLQRSLPKVTE GC+DECSHNREAAETRSSTPEMP        
Sbjct: 841  DGRVSPAGGTLDDKPREQLQRSLPKVTETGCSDECSHNREAAETRSSTPEMPAVSAFFSL 900

Query: 2999 XXXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
                    MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 901  AALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 942


>ref|XP_002684779.1| PREDICTED: bobby sox homolog (Drosophila) [Bos taurus].
          Length = 942

 Score = 1585 bits (4105), Expect = 0.0
 Identities = 797/942 (84%), Positives = 816/942 (86%), Gaps = 1/942 (0%)
 Frame = +2

Query: 302  MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
            MKGSNRNKDHSAEGEG GKRPKRKCLQWHPLLAKKLLDFS           IDKVQLLGA
Sbjct: 1    MKGSNRNKDHSAEGEGTGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60

Query: 482  DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
            DGLEQDV ETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61   DGLEQDVGETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120

Query: 662  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPT-VNPRKKLWAFPSDSSR 838
            LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSP PT VNPRKKLWAFPSDSSR
Sbjct: 121  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPAPTTVNPRKKLWAFPSDSSR 180

Query: 839  DLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSEL 1018
            DLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDV ESSEL
Sbjct: 181  DLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVPESSEL 240

Query: 1019 RQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQ 1198
            RQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTS LGGAEPVKRCGKSALFQ
Sbjct: 241  RQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSHLGGAEPVKRCGKSALFQ 300

Query: 1199 LAEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKS 1378
            LAEMCLASEGVKMEESKLI+ KE DGGRIKELEKGKEER+ KMEK DEARLQKEA+ EKS
Sbjct: 301  LAEMCLASEGVKMEESKLIRTKELDGGRIKELEKGKEERDTKMEKTDEARLQKEAEFEKS 360

Query: 1379 AKENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIII 1558
            AKEN RDSKE+RNFEELRMDDI+GIKME PK+IKKEELEEDQKC HFPDFSYSASSKIII
Sbjct: 361  AKENVRDSKEIRNFEELRMDDIIGIKMEAPKEIKKEELEEDQKCGHFPDFSYSASSKIII 420

Query: 1559 SDVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSS 1738
            SDVPSRKDH+CHPHGIMIIEDPT L+             MDRHGNDKSTPKK CKKRQSS
Sbjct: 421  SDVPSRKDHICHPHGIMIIEDPTALSKPEKLKKKKKKNKMDRHGNDKSTPKKACKKRQSS 480

Query: 1739 ESDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXX 1918
            ESDIESV+YTIEAVAKGDWGIEKLG+TPRKKVR SSSGKGSILDA               
Sbjct: 481  ESDIESVMYTIEAVAKGDWGIEKLGDTPRKKVRPSSSGKGSILDAKPPKKKVKSREKKMS 540

Query: 1919 XXXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDC 2098
                        PPDF+SISASKNI GEVPEGIKAEPLTPTEDALPP+L GQAKPEDSDC
Sbjct: 541  KEKSSDPTKESRPPDFISISASKNISGEVPEGIKAEPLTPTEDALPPTLSGQAKPEDSDC 600

Query: 2099 HRKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEES 2278
            HRKIETCG RKSERSCKGALYKTLVSEGMLTSLRANVD            D EGCWNEES
Sbjct: 601  HRKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEES 660

Query: 2279 WTFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXX 2458
            WTF+Q GTSGS         EDS+LGSTKLDEEFEKKFNSLPQYSPVTFD          
Sbjct: 661  WTFSQSGTSGSKKFKKTKPKEDSVLGSTKLDEEFEKKFNSLPQYSPVTFDRKCVPVPRKK 720

Query: 2459 XXTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDA 2638
              TG+MS+EPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWS+KQ FLDA
Sbjct: 721  KKTGNMSAEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSSKQLFLDA 780

Query: 2639 IHPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTA 2818
            IHPTEAIFSEDKNTTEPAYKVKNA SIPNTPEPTT QEPLVGSQKRKARKTKITHLVRTA
Sbjct: 781  IHPTEAIFSEDKNTTEPAYKVKNALSIPNTPEPTTTQEPLVGSQKRKARKTKITHLVRTA 840

Query: 2819 DGRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXX 2998
            DGRVSPAGGTLDDKP+EQLQRSLPKVTE GC+DECSHNREAAETRSSTPEMP        
Sbjct: 841  DGRVSPAGGTLDDKPREQLQRSLPKVTETGCSDECSHNREAAETRSSTPEMPAVSAFFSL 900

Query: 2999 XXXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
                    MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 901  AALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 942


>ref|NP_001193180.1| transcription factor SOX-17 [Bos taurus].
          Length = 410

 Score = 60.8 bits (146), Expect = 8e-09
 Identities = 30/82 (36%), Positives = 46/82 (56%)
 Frame = +2

Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
           E R RRPMNAF+++ K  R  + Q++P L N   +K+L   W  L   EK+ + + A+  
Sbjct: 65  ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERL 124

Query: 710 KDAFMKANPGYKWCPTTNKPVK 775
           +   M+ +P YK+ P   K VK
Sbjct: 125 RVQHMQDHPNYKYRPRRRKQVK 146


>ref|NP_001069257.1| transcription factor SOX-18 [Bos taurus].
          Length = 389

 Score = 60.8 bits (146), Expect = 8e-09
 Identities = 29/88 (32%), Positives = 48/88 (54%)
 Frame = +2

Query: 512 EDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYT 691
           E   + E R RRPMNAF+++ K  R  + Q++P L N   +K+L   W  L P EK+ + 
Sbjct: 76  ERQGTDESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELSPAEKRPFV 135

Query: 692 DMAKEYKDAFMKANPGYKWCPTTNKPVK 775
           + A+  +   ++ +P YK+ P   K  +
Sbjct: 136 EEAERLRVQHLRDHPNYKYRPRRKKQAR 163


>ref|XP_002692695.1| PREDICTED: SRY-box 17-like [Bos taurus].
          Length = 410

 Score = 60.8 bits (146), Expect = 8e-09
 Identities = 30/82 (36%), Positives = 46/82 (56%)
 Frame = +2

Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
           E R RRPMNAF+++ K  R  + Q++P L N   +K+L   W  L   EK+ + + A+  
Sbjct: 65  ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERL 124

Query: 710 KDAFMKANPGYKWCPTTNKPVK 775
           +   M+ +P YK+ P   K VK
Sbjct: 125 RVQHMQDHPNYKYRPRRRKQVK 146


>ref|NP_001157253.1| SRY (sex determining region Y)-box 14 [Bos taurus].
          Length = 240

 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 28/76 (36%), Positives = 43/76 (56%)
 Frame = +2

Query: 527 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 706
           P    +RPMNAF+++ +  R  + QE+P++ N   +K L   W +L   EK+ Y D AK 
Sbjct: 4   PSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKR 63

Query: 707 YKDAFMKANPGYKWCP 754
            +   MK +P YK+ P
Sbjct: 64  LRAQHMKEHPDYKYRP 79


>ref|NP_001098933.1| SRY (sex determining region Y)-box 2 [Bos taurus].
          Length = 320

 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 30/93 (32%), Positives = 49/93 (52%)
 Frame = +2

Query: 476 GADGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW 655
           G  G     A   + ++   R +RPMNAF+++ +  R  + QE+P++ N   +K L   W
Sbjct: 23  GGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEW 82

Query: 656 AVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCP 754
            +L   EK+ + D AK  +   MK +P YK+ P
Sbjct: 83  KLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 115


>ref|XP_002692040.1| PREDICTED: SRY (sex determining region Y)-box 1-like [Bos taurus].
          Length = 369

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 27/75 (36%), Positives = 44/75 (58%)
 Frame = +2

Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
           + R +RPMNAF+++ +  R  + QE+P++ N   +K L   W V+   EK+ + D AK  
Sbjct: 43  QDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRL 102

Query: 710 KDAFMKANPGYKWCP 754
           +   MK +P YK+ P
Sbjct: 103 RALHMKEHPDYKYRP 117


>ref|XP_875555.1| PREDICTED: SRY (sex determining region Y)-box 1-like [Bos taurus].
          Length = 369

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 27/75 (36%), Positives = 44/75 (58%)
 Frame = +2

Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
           + R +RPMNAF+++ +  R  + QE+P++ N   +K L   W V+   EK+ + D AK  
Sbjct: 43  QDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRL 102

Query: 710 KDAFMKANPGYKWCP 754
           +   MK +P YK+ P
Sbjct: 103 RALHMKEHPDYKYRP 117


>ref|XP_002689511.1| PREDICTED: SRY (sex determining region Y)-box 7 [Bos taurus].
          Length = 389

 Score = 56.6 bits (135), Expect = 1e-07
 Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
 Frame = +2

Query: 479 ADGLEQDVA-ETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATK--ILAD 649
           +DGL    A     D+  E R RRPMNAF+++ K  R  +  + P L N   ++  +   
Sbjct: 24  SDGLSPPAAPRPPGDKGSESRIRRPMNAFMVWAKDERKRLAVQXPDLHNAELSRCWVTGK 83

Query: 650 WWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSD 829
            W  L   +K+ Y D A+  +   M+  P YK+ P   K  K     V+P   L +   D
Sbjct: 84  SWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKRLCKRVDPGFLLSSLSRD 143

Query: 830 SS---------RDLPSPKKTKTEEMPQ 883
            +         R  P  K+ + E  P+
Sbjct: 144 QNSLPEKRGGGRGAPGEKEDRGEYSPR 170


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 126,860,512
Number of extensions: 3331197
Number of successful extensions: 13221
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 13106
Number of HSP's successfully gapped: 24
Length of query: 1178
Length of database: 17,681,374
Length adjustment: 113
Effective length of query: 1065
Effective length of database: 13,942,430
Effective search space: 14848687950
Effective search space used: 14848687950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002218
         (3534 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535728.2| PREDICTED: similar to HMG-BOX transcription fac...  1577   0.0  
Alignment   gi|XP_855647.1| PREDICTED: similar to HMG-BOX transcription fac...  1498   0.0  
Alignment   gi|XP_855743.1| PREDICTED: similar to HMG-BOX transcription fac...  1409   0.0  
Alignment   gi|XP_855676.1| PREDICTED: similar to HMG-BOX transcription fac...   436   e-122
Alignment   gi|XP_856084.1| PREDICTED: hypothetical protein XP_850991 [Cani...   149   2e-35
Alignment   gi|XP_541589.2| PREDICTED: similar to capicua homolog [Canis fa...   110   7e-24
Alignment   gi|XP_544084.2| PREDICTED: similar to SRY-box 17 [Canis familia...    61   9e-09
Alignment   gi|XP_545216.2| PREDICTED: similar to Transcription factor SOX-...    60   1e-08
Alignment   gi|XP_542802.2| PREDICTED: similar to SRY-box 14 [Canis familia...    60   1e-08
Alignment   gi|XP_849239.1| PREDICTED: similar to SRY (sex determining regi...    60   2e-08

>ref|XP_535728.2| PREDICTED: similar to HMG-BOX transcription factor BBX isoform 1
            [Canis familiaris].
          Length = 940

 Score = 1577 bits (4083), Expect = 0.0
 Identities = 795/941 (84%), Positives = 812/941 (86%)
 Frame = +2

Query: 302  MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
            MKGSNRNKDHS EGE AGKRPKRKCLQWHPLLAKKLLDFS           IDKVQLLGA
Sbjct: 1    MKGSNRNKDHSTEGERAGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60

Query: 482  DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
            DGLEQDV ET DDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61   DGLEQDVGET-DDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 119

Query: 662  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
            LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 120  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 179

Query: 842  LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
            LPSPKK KTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCR DVSES ELR
Sbjct: 180  LPSPKKAKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRQDVSESPELR 239

Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
            QKSPLFQFAEISSSTSHP+ PSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL
Sbjct: 240  QKSPLFQFAEISSSTSHPETPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 299

Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
            AEMCLASEGVKME+SKL+KAKE+DGGRIKELEKGKE+REIKMEK DEARLQK A+ E+ A
Sbjct: 300  AEMCLASEGVKMEDSKLMKAKESDGGRIKELEKGKEQREIKMEKTDEARLQKAAEFERPA 359

Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
            KEN RDSKELRNFEELRMDDIM IKMED K+IKKEELEEDQKCSHFPDFSYSASSKIIIS
Sbjct: 360  KENVRDSKELRNFEELRMDDIMDIKMEDSKEIKKEELEEDQKCSHFPDFSYSASSKIIIS 419

Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
            DVPSRKDH+CHPHGIMIIEDPT LN             MDRHGNDKSTPKKTCKKRQSSE
Sbjct: 420  DVPSRKDHMCHPHGIMIIEDPTALNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSE 479

Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
            SDIESV+YTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDA                
Sbjct: 480  SDIESVMYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSK 539

Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
                       PPDF++ISASKNI GEVPEGIKAEPLTPTE+ALPPSL GQAKPE+SDCH
Sbjct: 540  EKSSDTTKESRPPDFINISASKNISGEVPEGIKAEPLTPTEEALPPSLSGQAKPEESDCH 599

Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
            RKIETCG RKSERSCKGALYKTLVSEGMLTSLRANVD            D EGCWNEESW
Sbjct: 600  RKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESW 659

Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
            TFNQ GTSGS         EDSLLGS KLDEEFEKKFNSLPQYSPVTFD           
Sbjct: 660  TFNQSGTSGSKKFKKTKPKEDSLLGSAKLDEEFEKKFNSLPQYSPVTFDRKCVTVPRKKK 719

Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
             TG+MSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQ FLDAI
Sbjct: 720  KTGNMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQLFLDAI 779

Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
            HPTEAIFSEDKNTTEPA+KVKNA SIPNTPEPT  QEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 780  HPTEAIFSEDKNTTEPAHKVKNALSIPNTPEPTATQEPLVGSQKRKARKTKITHLVRTAD 839

Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
            GRVSPAGGTLDDKPKEQLQRSLPKV+E GCNDECSHN E AETRSSTPEMP         
Sbjct: 840  GRVSPAGGTLDDKPKEQLQRSLPKVSETGCNDECSHNPETAETRSSTPEMPAVSAFFSLA 899

Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
                   MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 900  ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 940


>ref|XP_855647.1| PREDICTED: similar to HMG-BOX transcription factor BBX isoform 2
            [Canis familiaris].
          Length = 910

 Score = 1498 bits (3879), Expect = 0.0
 Identities = 765/941 (81%), Positives = 782/941 (83%)
 Frame = +2

Query: 302  MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
            MKGSNRNKDHS EGE AGKRPKRKCLQWHPLLAKKLLDFS           IDKVQLLGA
Sbjct: 1    MKGSNRNKDHSTEGERAGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60

Query: 482  DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
            DGLEQDV ET DDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61   DGLEQDVGET-DDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 119

Query: 662  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
            LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 120  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 179

Query: 842  LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
            LPSPKK KTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCR DVSES ELR
Sbjct: 180  LPSPKKAKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRQDVSESPELR 239

Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
            QKSPLFQFAEISSSTSHP+ PSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL
Sbjct: 240  QKSPLFQFAEISSSTSHPETPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 299

Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
            AEMCLASEGVKME+SKL+KAKE+DGGRIKELEKGKE+REIKMEK DEARLQK A+ E+ A
Sbjct: 300  AEMCLASEGVKMEDSKLMKAKESDGGRIKELEKGKEQREIKMEKTDEARLQKAAEFERPA 359

Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
            KEN RDSKELRNFEELRMDDIM IKMED K+IKKEELEEDQKCSHFPDFSYSASSKIIIS
Sbjct: 360  KENVRDSKELRNFEELRMDDIMDIKMEDSKEIKKEELEEDQKCSHFPDFSYSASSKIIIS 419

Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
            DVPSRKDH+CHPHGIMIIEDPT LN             MDRHGNDKSTPKKTCKKRQSSE
Sbjct: 420  DVPSRKDHMCHPHGIMIIEDPTALNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSE 479

Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
            SDIESV+YTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDA                
Sbjct: 480  SDIESVMYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSK 539

Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
                       PPDF++ISASKNI GEVPEGIKAEPLTPTE+ALPPSL GQAKPE+SDCH
Sbjct: 540  EKSSDTTKESRPPDFINISASKNISGEVPEGIKAEPLTPTEEALPPSLSGQAKPEESDCH 599

Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
            RKIETCG RKSERSCKGALYKTLVSEGMLTSLRANVD            D EGCWNEESW
Sbjct: 600  RKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESW 659

Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
            TFNQ GTSGS         EDSLLGS KLDEEFEKKFNSLPQYSPVTFD           
Sbjct: 660  TFNQSGTSGSKKFKKTKPKEDSLLGSAKLDEEFEKKFNSLPQYSPVTFDRKCVTVPRKKK 719

Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
             TG+MSSEPTKTS                              KGSGDKWSNKQ FLDAI
Sbjct: 720  KTGNMSSEPTKTS------------------------------KGSGDKWSNKQLFLDAI 749

Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
            HPTEAIFSEDKNTTEPA+KVKNA SIPNTPEPT  QEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 750  HPTEAIFSEDKNTTEPAHKVKNALSIPNTPEPTATQEPLVGSQKRKARKTKITHLVRTAD 809

Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
            GRVSPAGGTLDDKPKEQLQRSLPKV+E GCNDECSHN E AETRSSTPEMP         
Sbjct: 810  GRVSPAGGTLDDKPKEQLQRSLPKVSETGCNDECSHNPETAETRSSTPEMPAVSAFFSLA 869

Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
                   MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 870  ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 910


>ref|XP_855743.1| PREDICTED: similar to HMG-BOX transcription factor BBX isoform 4
            [Canis familiaris].
          Length = 890

 Score = 1409 bits (3647), Expect = 0.0
 Identities = 729/941 (77%), Positives = 747/941 (79%)
 Frame = +2

Query: 302  MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
            MKGSNRNKDHS EGE AGKRPKRKCLQWHPLLAKKLLDFS           IDKVQLLGA
Sbjct: 1    MKGSNRNKDHSTEGERAGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60

Query: 482  DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
            DGLEQDV ET DDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61   DGLEQDVGET-DDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 119

Query: 662  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
            LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 120  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 179

Query: 842  LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
            LPSPKK KTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCR DVSES ELR
Sbjct: 180  LPSPKKAKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRQDVSESPELR 239

Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
            QKSPLFQFAEISSSTSHP+ PSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL
Sbjct: 240  QKSPLFQFAEISSSTSHPETPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 299

Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
            AEMCLASEGVKME+SKL+KAKE+DGGRIKELEKGKE+REIKMEK DEARLQK A+ E+ A
Sbjct: 300  AEMCLASEGVKMEDSKLMKAKESDGGRIKELEKGKEQREIKMEKTDEARLQKAAEFERPA 359

Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
            KEN RDSKELRNFEELRMDDIM IKMED K+IKKEELEEDQKCSHFPDFSYSASSKIIIS
Sbjct: 360  KENVRDSKELRNFEELRMDDIMDIKMEDSKEIKKEELEEDQKCSHFPDFSYSASSKIIIS 419

Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
            DVPSRKDH+CHPHGIMIIEDPT LN             MDRHGNDKSTPKKTCKKRQSSE
Sbjct: 420  DVPSRKDHMCHPHGIMIIEDPTALNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSE 479

Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
            SDIESV+YTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDA                
Sbjct: 480  SDIESVMYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSK 539

Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
                       PPDF++ISASKNI GEVPEGIKAEPLTPTE+ALPPSL GQAKPE+SDCH
Sbjct: 540  EKSSDTTKESRPPDFINISASKNISGEVPEGIKAEPLTPTEEALPPSLSGQAKPEESDCH 599

Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
            RKIETCG RKSERSCKGALYKTLVSEGMLTSLRANVD            D EGCWNEESW
Sbjct: 600  RKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESW 659

Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
            TFNQ GTSGS         EDSLLGS KLDEEFEKKFNSLPQYSPVTFD           
Sbjct: 660  TFNQSGTSGSKKFKKTKPKEDSLLGSAKLDEEFEKKFNSLPQYSPVTFDRKCVTVPRKKK 719

Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
             TG+MSSEPTKTSK  F   K     +   K K+    PN P                  
Sbjct: 720  KTGNMSSEPTKTSKAIFSEDKNTT--EPAHKVKNALSIPNTP------------------ 759

Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
                                          EPT  QEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 760  ------------------------------EPTATQEPLVGSQKRKARKTKITHLVRTAD 789

Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
            GRVSPAGGTLDDKPKEQLQRSLPKV+E GCNDECSHN E AETRSSTPEMP         
Sbjct: 790  GRVSPAGGTLDDKPKEQLQRSLPKVSETGCNDECSHNPETAETRSSTPEMPAVSAFFSLA 849

Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
                   MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 850  ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 890


>ref|XP_855676.1| PREDICTED: similar to HMG-BOX transcription factor BBX isoform 3
            [Canis familiaris].
          Length = 293

 Score =  436 bits (1122), Expect = e-122
 Identities = 217/256 (84%), Positives = 220/256 (85%)
 Frame = +2

Query: 2357 STKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXXXTGSMSSEPTKTSKGPFQSQKKNLF 2536
            S KLDEEFEKKFNSLPQYSPVTFD            TG+MSSEPTKTSKGPFQSQKKNLF
Sbjct: 38   SAKLDEEFEKKFNSLPQYSPVTFDRKCVTVPRKKKKTGNMSSEPTKTSKGPFQSQKKNLF 97

Query: 2537 HKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAIHPTEAIFSEDKNTTEPAYKVKNAPS 2716
            HKIVSKYKHKKEKPNVPEKGSGDKWSNKQ FLDAIHPTEAIFSEDKNTTEPA+KVKNA S
Sbjct: 98   HKIVSKYKHKKEKPNVPEKGSGDKWSNKQLFLDAIHPTEAIFSEDKNTTEPAHKVKNALS 157

Query: 2717 IPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKV 2896
            IPNTPEPT  QEPLVGSQKRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKV
Sbjct: 158  IPNTPEPTATQEPLVGSQKRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKV 217

Query: 2897 TEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXXXXXXXXXMENVHRGQRSTPLTHDGQ 3076
            +E GCNDECSHN E AETRSSTPEMP                MENVHRGQRSTPLTHDGQ
Sbjct: 218  SETGCNDECSHNPETAETRSSTPEMPAVSAFFSLAALAEVAAMENVHRGQRSTPLTHDGQ 277

Query: 3077 PKEMPQAPVLISCADQ 3124
            PKEMPQAPVLISCADQ
Sbjct: 278  PKEMPQAPVLISCADQ 293


>ref|XP_856084.1| PREDICTED: hypothetical protein XP_850991 [Canis familiaris].
          Length = 169

 Score =  149 bits (376), Expect = 2e-35
 Identities = 72/85 (84%), Positives = 74/85 (87%)
 Frame = +2

Query: 32  VKRRQSGSASSSPLSHREPLTGR*GRATHTPSRPASPRGHYHMTKALPQFIFLSVYFPFA 211
           V+RRQ GSA S  LSH    TGR GRATHTPS PASPRGHYHMTKALPQFIFL VYFPFA
Sbjct: 85  VERRQRGSAGSPALSHSRAPTGRPGRATHTPSHPASPRGHYHMTKALPQFIFLPVYFPFA 144

Query: 212 FLESCCITEAGSSDVPLKSQWKVLT 286
           FLESCCITEAG+SDVPLKSQWKVLT
Sbjct: 145 FLESCCITEAGNSDVPLKSQWKVLT 169


>ref|XP_541589.2| PREDICTED: similar to capicua homolog [Canis familiaris].
          Length = 2516

 Score =  110 bits (276), Expect = 7e-24
 Identities = 56/117 (47%), Positives = 72/117 (61%), Gaps = 4/117 (3%)
 Frame = +2

Query: 461  KVQLLGADGLEQDVAETEDDESPEQRA----RRPMNAFLLFCKRHRSLVRQEHPRLDNRG 628
            + Q L A   E+D +  +D  SP +R     RRPMNAF++F KRHR+LV Q HP  DNR 
Sbjct: 1075 RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT 1134

Query: 629  ATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNP 799
             +KIL +WW  L PKEKQKY D+A + K+A  KA+P +KWC   NK  K  +    P
Sbjct: 1135 VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWC---NKDRKKSSSEAKP 1188


>ref|XP_544084.2| PREDICTED: similar to SRY-box 17 [Canis familiaris].
          Length = 402

 Score = 60.8 bits (146), Expect = 9e-09
 Identities = 29/85 (34%), Positives = 47/85 (55%)
 Frame = +2

Query: 521 ESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMA 700
           +  E R RRPMNAF+++ K  R  + Q++P L N   +K+L   W  L  + K+ + + A
Sbjct: 45  QGSESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALSLRRKRPFVEEA 104

Query: 701 KEYKDAFMKANPGYKWCPTTNKPVK 775
           +  +   M+ +P YK+ P   K VK
Sbjct: 105 ERLRVQHMQDHPNYKYRPRRRKQVK 129


>ref|XP_545216.2| PREDICTED: similar to Transcription factor SOX-2 [Canis
           familiaris].
          Length = 489

 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 30/93 (32%), Positives = 49/93 (52%)
 Frame = +2

Query: 476 GADGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW 655
           G  G     A   + ++   R +RPMNAF+++ +  R  + QE+P++ N   +K L   W
Sbjct: 192 GGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEW 251

Query: 656 AVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCP 754
            +L   EK+ + D AK  +   MK +P YK+ P
Sbjct: 252 KLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 284


>ref|XP_542802.2| PREDICTED: similar to SRY-box 14 [Canis familiaris].
          Length = 578

 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 28/76 (36%), Positives = 43/76 (56%)
 Frame = +2

Query: 527 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 706
           P    +RPMNAF+++ +  R  + QE+P++ N   +K L   W +L   EK+ Y D AK 
Sbjct: 342 PSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKR 401

Query: 707 YKDAFMKANPGYKWCP 754
            +   MK +P YK+ P
Sbjct: 402 LRAQHMKEHPDYKYRP 417


>ref|XP_849239.1| PREDICTED: similar to SRY (sex determining region Y)-box 1 [Canis
           familiaris].
          Length = 403

 Score = 59.7 bits (143), Expect = 2e-08
 Identities = 27/78 (34%), Positives = 46/78 (58%)
 Frame = +2

Query: 521 ESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMA 700
           ++ + R +RPMNAF+++ +  R  + QE+P++ N   +K L   W V+   EK+ + D A
Sbjct: 51  KASQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEA 110

Query: 701 KEYKDAFMKANPGYKWCP 754
           K  +   MK +P YK+ P
Sbjct: 111 KRLRALHMKEHPDYKYRP 128


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 132,018,753
Number of extensions: 3390541
Number of successful extensions: 13671
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 13542
Number of HSP's successfully gapped: 42
Length of query: 1178
Length of database: 18,874,504
Length adjustment: 114
Effective length of query: 1064
Effective length of database: 15,074,200
Effective search space: 16038948800
Effective search space used: 16038948800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002218
         (3534 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001136040.1| HMG box transcription factor BBX isoform 1 [...  1565   0.0  
Alignment   gi|NP_064620.2| HMG box transcription factor BBX isoform 2 [Hom...  1487   0.0  
Alignment   gi|NP_055940.3| protein capicua homolog [Homo sapiens].              111   5e-24
Alignment   gi|NP_113627.1| transcription factor SOX-7 [Homo sapiens].            62   5e-09
Alignment   gi|NP_071899.1| transcription factor SOX-17 [Homo sapiens].           61   8e-09
Alignment   gi|NP_003097.1| transcription factor SOX-2 [Homo sapiens].            60   1e-08
Alignment   gi|NP_004180.1| transcription factor SOX-14 [Homo sapiens].           60   1e-08
Alignment   gi|NP_009015.1| transcription factor SOX-21 [Homo sapiens].           59   2e-08
Alignment   gi|NP_005977.2| transcription factor SOX-1 [Homo sapiens].            59   2e-08
Alignment   gi|NP_060889.1| transcription factor SOX-18 [Homo sapiens].           59   4e-08

>ref|NP_001136040.1| HMG box transcription factor BBX isoform 1 [Homo sapiens].
          Length = 941

 Score = 1565 bits (4053), Expect = 0.0
 Identities = 785/941 (83%), Positives = 804/941 (85%)
 Frame = +2

Query: 302  MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
            MKGSNRNKDHSAEGEG GKRPKRKCLQWHPLLAKKLLDFS           IDKVQLLGA
Sbjct: 1    MKGSNRNKDHSAEGEGVGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60

Query: 482  DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
            DGLEQDV ETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61   DGLEQDVGETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120

Query: 662  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
            LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 121  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 180

Query: 842  LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
            LPSPKK KTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPE+SSGTCRPDVSES ELR
Sbjct: 181  LPSPKKAKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEVSSGTCRPDVSESPELR 240

Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
            QKSPLFQFAEISSSTSH DA +KQCQ SALFQFAEISSNTSQLGGAEPVKRCGKSALFQL
Sbjct: 241  QKSPLFQFAEISSSTSHSDASTKQCQTSALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 300

Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
            AEMCLASEG+KMEESKLIKAKE+DGGRIKELEKGKEE+EIKMEK DE RLQKEA+ EKSA
Sbjct: 301  AEMCLASEGMKMEESKLIKAKESDGGRIKELEKGKEEKEIKMEKTDETRLQKEAEFEKSA 360

Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
            KEN RDSKELRNFE L++DDIM IKMEDPK+I+KEELEED KCSHFPDFSYSASSKIIIS
Sbjct: 361  KENLRDSKELRNFEALQIDDIMAIKMEDPKEIRKEELEEDHKCSHFPDFSYSASSKIIIS 420

Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
            DVPSRKDH+CHPHGIMIIEDP  LN             MDRHGNDKSTPKKTCKKRQSSE
Sbjct: 421  DVPSRKDHMCHPHGIMIIEDPAALNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSE 480

Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
            SDIESVIYTIEAVAKGDWGIEKLG+TPRKKVRTSSSGKGSILDA                
Sbjct: 481  SDIESVIYTIEAVAKGDWGIEKLGDTPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSK 540

Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
                       PPDF+SISASKNI GE PEGIKAEPLTP EDALPPSL GQAKPEDSDCH
Sbjct: 541  EKSSDTTKESRPPDFISISASKNISGETPEGIKAEPLTPMEDALPPSLSGQAKPEDSDCH 600

Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
            RKIETCG RKSERSCKGALYKTLVSEGMLTSLRANVD            D EGCWNEESW
Sbjct: 601  RKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESW 660

Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
            TF+Q GTSGS         ED LLGS KLDEEFEKKFNSLPQYSPVTFD           
Sbjct: 661  TFSQSGTSGSKKFKKTKPKEDCLLGSAKLDEEFEKKFNSLPQYSPVTFDRKCVPVPRKKK 720

Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
             TG++SSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQ FLDAI
Sbjct: 721  KTGNVSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQLFLDAI 780

Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
            HPTEAIFSED+NT EP +KVKN PSI NTPEPTT QEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 781  HPTEAIFSEDRNTMEPVHKVKNIPSIFNTPEPTTTQEPLVGSQKRKARKTKITHLVRTAD 840

Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
            GRVSPAGGTLDDKPKEQLQRSLPK TE  CND+CSHN E  ETRSSTPEMP         
Sbjct: 841  GRVSPAGGTLDDKPKEQLQRSLPKATETDCNDKCSHNTEVGETRSSTPEMPAVSAFFSLA 900

Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
                   MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 901  ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 941


>ref|NP_064620.2| HMG box transcription factor BBX isoform 2 [Homo sapiens].
          Length = 911

 Score = 1487 bits (3849), Expect = 0.0
 Identities = 755/941 (80%), Positives = 774/941 (82%)
 Frame = +2

Query: 302  MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
            MKGSNRNKDHSAEGEG GKRPKRKCLQWHPLLAKKLLDFS           IDKVQLLGA
Sbjct: 1    MKGSNRNKDHSAEGEGVGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60

Query: 482  DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
            DGLEQDV ETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61   DGLEQDVGETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120

Query: 662  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
            LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 121  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 180

Query: 842  LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
            LPSPKK KTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPE+SSGTCRPDVSES ELR
Sbjct: 181  LPSPKKAKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEVSSGTCRPDVSESPELR 240

Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
            QKSPLFQFAEISSSTSH DA +KQCQ SALFQFAEISSNTSQLGGAEPVKRCGKSALFQL
Sbjct: 241  QKSPLFQFAEISSSTSHSDASTKQCQTSALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 300

Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
            AEMCLASEG+KMEESKLIKAKE+DGGRIKELEKGKEE+EIKMEK DE RLQKEA+ EKSA
Sbjct: 301  AEMCLASEGMKMEESKLIKAKESDGGRIKELEKGKEEKEIKMEKTDETRLQKEAEFEKSA 360

Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
            KEN RDSKELRNFE L++DDIM IKMEDPK+I+KEELEED KCSHFPDFSYSASSKIIIS
Sbjct: 361  KENLRDSKELRNFEALQIDDIMAIKMEDPKEIRKEELEEDHKCSHFPDFSYSASSKIIIS 420

Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
            DVPSRKDH+CHPHGIMIIEDP  LN             MDRHGNDKSTPKKTCKKRQSSE
Sbjct: 421  DVPSRKDHMCHPHGIMIIEDPAALNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSE 480

Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
            SDIESVIYTIEAVAKGDWGIEKLG+TPRKKVRTSSSGKGSILDA                
Sbjct: 481  SDIESVIYTIEAVAKGDWGIEKLGDTPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSK 540

Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
                       PPDF+SISASKNI GE PEGIKAEPLTP EDALPPSL GQAKPEDSDCH
Sbjct: 541  EKSSDTTKESRPPDFISISASKNISGETPEGIKAEPLTPMEDALPPSLSGQAKPEDSDCH 600

Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
            RKIETCG RKSERSCKGALYKTLVSEGMLTSLRANVD            D EGCWNEESW
Sbjct: 601  RKIETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESW 660

Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
            TF+Q GTSGS         ED LLGS KLDEEFEKKFNSLPQYSPVTFD           
Sbjct: 661  TFSQSGTSGSKKFKKTKPKEDCLLGSAKLDEEFEKKFNSLPQYSPVTFDRKCVPVPRKKK 720

Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
             TG++SSEPTKTS                              KGSGDKWSNKQ FLDAI
Sbjct: 721  KTGNVSSEPTKTS------------------------------KGSGDKWSNKQLFLDAI 750

Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
            HPTEAIFSED+NT EP +KVKN PSI NTPEPTT QEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 751  HPTEAIFSEDRNTMEPVHKVKNIPSIFNTPEPTTTQEPLVGSQKRKARKTKITHLVRTAD 810

Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
            GRVSPAGGTLDDKPKEQLQRSLPK TE  CND+CSHN E  ETRSSTPEMP         
Sbjct: 811  GRVSPAGGTLDDKPKEQLQRSLPKATETDCNDKCSHNTEVGETRSSTPEMPAVSAFFSLA 870

Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
                   MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 871  ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 911


>ref|NP_055940.3| protein capicua homolog [Homo sapiens].
          Length = 1608

 Score =  111 bits (277), Expect = 5e-24
 Identities = 87/289 (30%), Positives = 128/289 (44%), Gaps = 20/289 (6%)
 Frame = +2

Query: 461  KVQLLGADGLEQDVAETEDDESPEQRA----RRPMNAFLLFCKRHRSLVRQEHPRLDNRG 628
            + Q L A   E+D +  +D  SP +R     RRPMNAF++F KRHR+LV Q HP  DNR 
Sbjct: 170  RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT 229

Query: 629  ATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKK 808
             +KIL +WW  L PKEKQKY D+A + K+A  KA+P +KWC   NK  K  +    P   
Sbjct: 230  VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWC---NKDRKKSSSEAKPTSL 286

Query: 809  LWAFPSDSSRDLPSPKKTKTEEMPQLNFG---------MADPTQMGGLSMLLLAGEHALG 961
              A     +R+  S  +T T   P ++           ++  T+  G S       H +G
Sbjct: 287  GLAGGHKETRE-RSMSETGTAAAPGVSSELLSVAAQTLLSSDTKAPGSSSCGAERLHTVG 345

Query: 962  TPEISSGTCRPDVSESSELR-------QKSPLFQFAEISSSTSHPDAPSKQCQASALFQF 1120
             P    G+ RP     S +            L +  ++ S  +    P    Q  A   F
Sbjct: 346  GP----GSARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKPSTQYGAPGPF 401

Query: 1121 AEISSNTSQLGGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKE 1267
            A      +      P     +++  Q A    ASE +  +E +++  +E
Sbjct: 402  AAPGEGGALAATGRPPLLPTRASRSQRA----ASEDMTSDEERMVICEE 446


>ref|NP_113627.1| transcription factor SOX-7 [Homo sapiens].
          Length = 388

 Score = 61.6 bits (148), Expect = 5e-09
 Identities = 32/94 (34%), Positives = 48/94 (51%)
 Frame = +2

Query: 518 DESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDM 697
           D+  E R RRPMNAF+++ K  R  +  ++P L N   +K+L   W  L   +K+ Y D 
Sbjct: 38  DKGSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALTLSQKRPYVDE 97

Query: 698 AKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNP 799
           A+  +   M+  P YK+ P   K  K     V+P
Sbjct: 98  AERLRLQHMQDYPNYKYRPRRKKQAKRLCKRVDP 131


>ref|NP_071899.1| transcription factor SOX-17 [Homo sapiens].
          Length = 414

 Score = 60.8 bits (146), Expect = 8e-09
 Identities = 30/82 (36%), Positives = 46/82 (56%)
 Frame = +2

Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
           E R RRPMNAF+++ K  R  + Q++P L N   +K+L   W  L   EK+ + + A+  
Sbjct: 65  ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERL 124

Query: 710 KDAFMKANPGYKWCPTTNKPVK 775
           +   M+ +P YK+ P   K VK
Sbjct: 125 RVQHMQDHPNYKYRPRRRKQVK 146


>ref|NP_003097.1| transcription factor SOX-2 [Homo sapiens].
          Length = 317

 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 30/93 (32%), Positives = 49/93 (52%)
 Frame = +2

Query: 476 GADGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW 655
           G  G     A   + ++   R +RPMNAF+++ +  R  + QE+P++ N   +K L   W
Sbjct: 20  GGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEW 79

Query: 656 AVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCP 754
            +L   EK+ + D AK  +   MK +P YK+ P
Sbjct: 80  KLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 112


>ref|NP_004180.1| transcription factor SOX-14 [Homo sapiens].
          Length = 240

 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 28/76 (36%), Positives = 43/76 (56%)
 Frame = +2

Query: 527 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 706
           P    +RPMNAF+++ +  R  + QE+P++ N   +K L   W +L   EK+ Y D AK 
Sbjct: 4   PSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKR 63

Query: 707 YKDAFMKANPGYKWCP 754
            +   MK +P YK+ P
Sbjct: 64  LRAQHMKEHPDYKYRP 79


>ref|NP_009015.1| transcription factor SOX-21 [Homo sapiens].
          Length = 276

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 32/99 (32%), Positives = 50/99 (50%)
 Frame = +2

Query: 527 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 706
           P    +RPMNAF+++ +  R  + QE+P++ N   +K L   W +L   EK+ + D AK 
Sbjct: 4   PVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKR 63

Query: 707 YKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFP 823
            +   MK +P YK+ P          P    +K  +AFP
Sbjct: 64  LRAMHMKEHPDYKYRPRRK-------PKTLLKKDKFAFP 95


>ref|NP_005977.2| transcription factor SOX-1 [Homo sapiens].
          Length = 391

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 27/75 (36%), Positives = 44/75 (58%)
 Frame = +2

Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
           + R +RPMNAF+++ +  R  + QE+P++ N   +K L   W V+   EK+ + D AK  
Sbjct: 48  QDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRL 107

Query: 710 KDAFMKANPGYKWCP 754
           +   MK +P YK+ P
Sbjct: 108 RALHMKEHPDYKYRP 122


>ref|NP_060889.1| transcription factor SOX-18 [Homo sapiens].
          Length = 384

 Score = 58.5 bits (140), Expect = 4e-08
 Identities = 28/88 (31%), Positives = 48/88 (54%)
 Frame = +2

Query: 512 EDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYT 691
           E   + E R RRPMNAF+++ K  R  + Q++P L N   +K+L   W  L+  EK+ + 
Sbjct: 76  ERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFV 135

Query: 692 DMAKEYKDAFMKANPGYKWCPTTNKPVK 775
           + A+  +   ++ +P YK+ P   K  +
Sbjct: 136 EEAERLRVQHLRDHPNYKYRPRRKKQAR 163


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 130,082,895
Number of extensions: 3378514
Number of successful extensions: 13943
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 13794
Number of HSP's successfully gapped: 22
Length of query: 1178
Length of database: 18,297,164
Length adjustment: 114
Effective length of query: 1064
Effective length of database: 14,539,268
Effective search space: 15469781152
Effective search space used: 15469781152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002218
         (3534 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_081720.2| HMG box transcription factor BBX [Mus musculus].    1412   0.0  
Alignment   gi|NP_001103602.1| protein capicua homolog isoform c [Mus muscu...   112   2e-24
Alignment   gi|NP_001103601.1| protein capicua homolog isoform b [Mus muscu...   112   2e-24
Alignment   gi|NP_082158.2| protein capicua homolog isoform a [Mus musculus].    112   2e-24
Alignment   gi|NP_035576.1| transcription factor SOX-7 [Mus musculus].            64   1e-09
Alignment   gi|NP_035571.1| transcription factor SOX-17 [Mus musculus].           62   4e-09
Alignment   gi|NP_035570.1| transcription factor SOX-14 [Mus musculus].           60   1e-08
Alignment   gi|NP_035573.3| transcription factor SOX-2 [Mus musculus].            60   2e-08
Alignment   gi|NP_808421.1| transcription factor SOX-21 [Mus musculus].           59   2e-08
Alignment   gi|NP_033259.2| transcription factor SOX-1 [Mus musculus].            59   2e-08

>ref|NP_081720.2| HMG box transcription factor BBX [Mus musculus].
          Length = 907

 Score = 1412 bits (3655), Expect = 0.0
 Identities = 722/941 (76%), Positives = 762/941 (80%)
 Frame = +2

Query: 302  MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
            MKGSNRNKDHS EGEG GKRPKRKCLQWHPLLAKKLLDFS           IDKVQLL A
Sbjct: 1    MKGSNRNKDHSTEGEGDGKRPKRKCLQWHPLLAKKLLDFSEEEEEDEEEEDIDKVQLLEA 60

Query: 482  DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
            DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61   DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120

Query: 662  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
            LDPKEKQKYTDMAKEYKDAFMKANPGY+WCPTTNKPVKSPTPTVNPRKKLWAFP DSSRD
Sbjct: 121  LDPKEKQKYTDMAKEYKDAFMKANPGYRWCPTTNKPVKSPTPTVNPRKKLWAFPPDSSRD 180

Query: 842  LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
            LP+PKK KT E+PQLNFGMADPTQMGGLSMLLLAGEHALGTPE SSGTCRPD+SES ELR
Sbjct: 181  LPTPKKAKT-EVPQLNFGMADPTQMGGLSMLLLAGEHALGTPEASSGTCRPDISESPELR 239

Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
            QKSPLFQFAEISS TSHPDAPSKQCQASALFQFAEISS+TSQLGG EPVKRCG SALFQL
Sbjct: 240  QKSPLFQFAEISSRTSHPDAPSKQCQASALFQFAEISSSTSQLGGTEPVKRCGNSALFQL 299

Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
            AEMCLASEGVKME++KLIK+KE+DGGRI+E+EKGKEER  ++EK  E   QKEA+  KSA
Sbjct: 300  AEMCLASEGVKMEDTKLIKSKESDGGRIEEIEKGKEERGTEVEKTTETSFQKEAEFGKSA 359

Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
            K N R+SK+LR+ E+L+MD++M IK+EDPK+I+KE  E+DQK SHFPDFSYSASSKIIIS
Sbjct: 360  KGNVRESKDLRDIEQLQMDNVMAIKVEDPKEIRKEP-EDDQKYSHFPDFSYSASSKIIIS 418

Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
             VPSRKDH+CHPHGIMIIEDPTTLN             +DRHGNDKSTPKKTCKKRQSSE
Sbjct: 419  GVPSRKDHMCHPHGIMIIEDPTTLNKPEKIKKKKKKNKLDRHGNDKSTPKKTCKKRQSSE 478

Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
            SDIESV+YTIEAVAKGDWG++KLGETPRKKVR SSSGKG ILDA                
Sbjct: 479  SDIESVMYTIEAVAKGDWGVDKLGETPRKKVRPSSSGKGGILDAKPPKKKVKSKEKKVSK 538

Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
                       PPDFLSISASK++PGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH
Sbjct: 539  EKCSDITKESRPPDFLSISASKSVPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 598

Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
            RK ETCG RKSERSCKGALYKTLVSEGMLTSLRANVD            D EGCW+EESW
Sbjct: 599  RKTETCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWSEESW 658

Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
            TFNQ GTSGS         EDS LGS KLDEEFEKKFNSLPQYSP+TFD           
Sbjct: 659  TFNQSGTSGS-KKFKKKLREDSFLGSAKLDEEFEKKFNSLPQYSPITFDRKCVSTPRKKK 717

Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
             TG+MSSE TKTS                              KGSGDKWS+KQFFLDAI
Sbjct: 718  KTGNMSSESTKTS------------------------------KGSGDKWSHKQFFLDAI 747

Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
            HPTEAIFSEDK+TTEPA+KVKNA SIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 748  HPTEAIFSEDKSTTEPAFKVKNALSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 807

Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
            GRVSPAGGTLDDKPKEQLQRSLPKV    C D CSH+    E RSSTP+MP         
Sbjct: 808  GRVSPAGGTLDDKPKEQLQRSLPKVPGTYCGDNCSHS-TVEEPRSSTPDMPAVSAFFSLA 866

Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
                   MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 867  ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 907


>ref|NP_001103602.1| protein capicua homolog isoform c [Mus musculus].
          Length = 1604

 Score =  112 bits (281), Expect = 2e-24
 Identities = 87/289 (30%), Positives = 129/289 (44%), Gaps = 20/289 (6%)
 Frame = +2

Query: 461  KVQLLGADGLEQDVAETEDDESPEQRA----RRPMNAFLLFCKRHRSLVRQEHPRLDNRG 628
            + Q L A   E+D +  +D  SP +R     RRPMNAF++F KRHR+LV Q HP  DNR 
Sbjct: 170  RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT 229

Query: 629  ATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKK 808
             +KIL +WW  L PKEKQKY D+A + K+A  KA+P +KWC   NK  K  +    P   
Sbjct: 230  VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWC---NKDRKKSSSEAKPASL 286

Query: 809  LWAFPSDSSRDLPSPKKTKTEEMPQLNFG---------MADPTQMGGLSMLLLAGEHALG 961
              A     +R+  S  +T T   P ++           ++  T++ G         HA+G
Sbjct: 287  GLAGGHKETRE-RSMSETGTAAAPGVSSELLSVAAQTLLSSDTKVPGSGPCGAERLHAVG 345

Query: 962  TPEISSGTCRPDVSESSELR-------QKSPLFQFAEISSSTSHPDAPSKQCQASALFQF 1120
             P    G+ RP     S +            L +  ++ S  +    P    Q  A   F
Sbjct: 346  AP----GSARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKPSPQYGAPGSF 401

Query: 1121 AEISSNTSQLGGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKE 1267
            A      +      P     +++  Q A    ASE +  +E +++  +E
Sbjct: 402  AAPGEGGTLATSGRPPLLPSRASRSQRA----ASEDMTSDEERMVICEE 446


>ref|NP_001103601.1| protein capicua homolog isoform b [Mus musculus].
          Length = 1603

 Score =  112 bits (281), Expect = 2e-24
 Identities = 87/289 (30%), Positives = 129/289 (44%), Gaps = 20/289 (6%)
 Frame = +2

Query: 461  KVQLLGADGLEQDVAETEDDESPEQRA----RRPMNAFLLFCKRHRSLVRQEHPRLDNRG 628
            + Q L A   E+D +  +D  SP +R     RRPMNAF++F KRHR+LV Q HP  DNR 
Sbjct: 170  RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT 229

Query: 629  ATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKK 808
             +KIL +WW  L PKEKQKY D+A + K+A  KA+P +KWC   NK  K  +    P   
Sbjct: 230  VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWC---NKDRKKSSSEAKPASL 286

Query: 809  LWAFPSDSSRDLPSPKKTKTEEMPQLNFG---------MADPTQMGGLSMLLLAGEHALG 961
              A     +R+  S  +T T   P ++           ++  T++ G         HA+G
Sbjct: 287  GLAGGHKETRE-RSMSETGTAAAPGVSSELLSVAAQTLLSSDTKVPGSGPCGAERLHAVG 345

Query: 962  TPEISSGTCRPDVSESSELR-------QKSPLFQFAEISSSTSHPDAPSKQCQASALFQF 1120
             P    G+ RP     S +            L +  ++ S  +    P    Q  A   F
Sbjct: 346  AP----GSARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKPSPQYGAPGSF 401

Query: 1121 AEISSNTSQLGGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKE 1267
            A      +      P     +++  Q A    ASE +  +E +++  +E
Sbjct: 402  AAPGEGGTLATSGRPPLLPSRASRSQRA----ASEDMTSDEERMVICEE 446


>ref|NP_082158.2| protein capicua homolog isoform a [Mus musculus].
          Length = 1604

 Score =  112 bits (281), Expect = 2e-24
 Identities = 87/289 (30%), Positives = 129/289 (44%), Gaps = 20/289 (6%)
 Frame = +2

Query: 461  KVQLLGADGLEQDVAETEDDESPEQRA----RRPMNAFLLFCKRHRSLVRQEHPRLDNRG 628
            + Q L A   E+D +  +D  SP +R     RRPMNAF++F KRHR+LV Q HP  DNR 
Sbjct: 170  RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT 229

Query: 629  ATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKK 808
             +KIL +WW  L PKEKQKY D+A + K+A  KA+P +KWC   NK  K  +    P   
Sbjct: 230  VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWC---NKDRKKSSSEAKPASL 286

Query: 809  LWAFPSDSSRDLPSPKKTKTEEMPQLNFG---------MADPTQMGGLSMLLLAGEHALG 961
              A     +R+  S  +T T   P ++           ++  T++ G         HA+G
Sbjct: 287  GLAGGHKETRE-RSMSETGTAAAPGVSSELLSVAAQTLLSSDTKVPGSGPCGAERLHAVG 345

Query: 962  TPEISSGTCRPDVSESSELR-------QKSPLFQFAEISSSTSHPDAPSKQCQASALFQF 1120
             P    G+ RP     S +            L +  ++ S  +    P    Q  A   F
Sbjct: 346  AP----GSARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKPSPQYGAPGSF 401

Query: 1121 AEISSNTSQLGGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKE 1267
            A      +      P     +++  Q A    ASE +  +E +++  +E
Sbjct: 402  AAPGEGGTLATSGRPPLLPSRASRSQRA----ASEDMTSDEERMVICEE 446


>ref|NP_035576.1| transcription factor SOX-7 [Mus musculus].
          Length = 380

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
 Frame = +2

Query: 479 ADGLEQD-VAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW 655
           +DGL    V     D+S E R RRPMNAF+++ K  R  +  ++P L N   +K+L   W
Sbjct: 24  SDGLSPPAVPRPSGDKSSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSW 83

Query: 656 AVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNP 799
             L   +K+ Y D A+  +   M+  P YK+ P   K  K     V+P
Sbjct: 84  KALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQGKRLCKRVDP 131


>ref|NP_035571.1| transcription factor SOX-17 [Mus musculus].
          Length = 419

 Score = 61.6 bits (148), Expect = 4e-09
 Identities = 32/91 (35%), Positives = 48/91 (52%)
 Frame = +2

Query: 503 AETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQ 682
           A T      E R RRPMNAF+++ K  R  + Q++P L N   +K+L   W  L   EK+
Sbjct: 56  AGTSGRAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKR 115

Query: 683 KYTDMAKEYKDAFMKANPGYKWCPTTNKPVK 775
            + + A+  +   M+ +P YK+ P   K VK
Sbjct: 116 PFVEEAERLRVQHMQDHPNYKYRPRRRKQVK 146


>ref|NP_035570.1| transcription factor SOX-14 [Mus musculus].
          Length = 240

 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 28/76 (36%), Positives = 43/76 (56%)
 Frame = +2

Query: 527 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 706
           P    +RPMNAF+++ +  R  + QE+P++ N   +K L   W +L   EK+ Y D AK 
Sbjct: 4   PSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKR 63

Query: 707 YKDAFMKANPGYKWCP 754
            +   MK +P YK+ P
Sbjct: 64  LRAQHMKEHPDYKYRP 79


>ref|NP_035573.3| transcription factor SOX-2 [Mus musculus].
          Length = 319

 Score = 59.7 bits (143), Expect = 2e-08
 Identities = 30/93 (32%), Positives = 49/93 (52%)
 Frame = +2

Query: 476 GADGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW 655
           G  G     A   + ++   R +RPMNAF+++ +  R  + QE+P++ N   +K L   W
Sbjct: 22  GGGGNATAAATGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEW 81

Query: 656 AVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCP 754
            +L   EK+ + D AK  +   MK +P YK+ P
Sbjct: 82  KLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 114


>ref|NP_808421.1| transcription factor SOX-21 [Mus musculus].
          Length = 276

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 32/99 (32%), Positives = 50/99 (50%)
 Frame = +2

Query: 527 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 706
           P    +RPMNAF+++ +  R  + QE+P++ N   +K L   W +L   EK+ + D AK 
Sbjct: 4   PVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKR 63

Query: 707 YKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFP 823
            +   MK +P YK+ P          P    +K  +AFP
Sbjct: 64  LRAMHMKEHPDYKYRPRRK-------PKTLLKKDKFAFP 95


>ref|NP_033259.2| transcription factor SOX-1 [Mus musculus].
          Length = 391

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 27/75 (36%), Positives = 44/75 (58%)
 Frame = +2

Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
           + R +RPMNAF+++ +  R  + QE+P++ N   +K L   W V+   EK+ + D AK  
Sbjct: 48  QDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRL 107

Query: 710 KDAFMKANPGYKWCP 754
           +   MK +P YK+ P
Sbjct: 108 RALHMKEHPDYKYRP 122


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 111,104,331
Number of extensions: 2878658
Number of successful extensions: 12153
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 12020
Number of HSP's successfully gapped: 24
Length of query: 1178
Length of database: 15,617,559
Length adjustment: 113
Effective length of query: 1065
Effective length of database: 12,223,491
Effective search space: 13018017915
Effective search space used: 13018017915
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002218
         (3534 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003361467.1| PREDICTED: HMG box transcription factor BBX-...  1670   0.0  
Alignment   gi|XP_003361468.1| PREDICTED: HMG box transcription factor BBX-...  1592   0.0  
Alignment   gi|XP_003358873.1| PREDICTED: HMG box transcription factor BBX-...  1234   0.0  
Alignment   gi|XP_003132735.2| PREDICTED: HMG box transcription factor BBX-...   541   e-154
Alignment   gi|XP_003355979.1| PREDICTED: protein capicua homolog [Sus scro...   112   2e-24
Alignment   gi|XP_003359100.1| PREDICTED: transcription factor SOX-7 [Sus s...    65   3e-10
Alignment   gi|XP_001928411.1| PREDICTED: transcription factor SOX-17-like ...    61   5e-09
Alignment   gi|XP_003131095.1| PREDICTED: transcription factor SOX-21-like ...    59   1e-08
Alignment   gi|NP_001116669.1| transcription factor SOX-2 [Sus scrofa].           59   2e-08
Alignment   gi|XP_003360512.1| PREDICTED: transcription factor SOX-3-like [...    56   2e-07

>ref|XP_003361467.1| PREDICTED: HMG box transcription factor BBX-like isoform 1 [Sus
            scrofa].
          Length = 941

 Score = 1670 bits (4325), Expect = 0.0
 Identities = 840/941 (89%), Positives = 840/941 (89%)
 Frame = +2

Query: 302  MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
            MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFS           IDKVQLLGA
Sbjct: 1    MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60

Query: 482  DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
            DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61   DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120

Query: 662  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
            LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 121  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 180

Query: 842  LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
            LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR
Sbjct: 181  LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 240

Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
            QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL
Sbjct: 241  QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 300

Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
            AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA
Sbjct: 301  AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 360

Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
            KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS
Sbjct: 361  KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 420

Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
            DVPSRKDHLCHPHGIMIIEDPTTLN             MDRHGNDKSTPKKTCKKRQSSE
Sbjct: 421  DVPSRKDHLCHPHGIMIIEDPTTLNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSE 480

Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
            SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDA                
Sbjct: 481  SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSK 540

Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
                       PPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH
Sbjct: 541  EKSSDTTKESRPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 600

Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
            RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVD            D EGCWNEESW
Sbjct: 601  RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESW 660

Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
            TFNQIGTSGS         EDSLLGSTKLDEEFEKKFNSLPQYSPVTFD           
Sbjct: 661  TFNQIGTSGSKKFKKTKPKEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDRKCVPVPRKKK 720

Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
             TGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI
Sbjct: 721  KTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 780

Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
            HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 781  HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 840

Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
            GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMP         
Sbjct: 841  GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPAVSAFFSLA 900

Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
                   MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 901  ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 941


>ref|XP_003361468.1| PREDICTED: HMG box transcription factor BBX-like isoform 2 [Sus
            scrofa].
          Length = 911

 Score = 1592 bits (4121), Expect = 0.0
 Identities = 810/941 (86%), Positives = 810/941 (86%)
 Frame = +2

Query: 302  MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
            MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFS           IDKVQLLGA
Sbjct: 1    MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60

Query: 482  DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
            DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61   DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120

Query: 662  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
            LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 121  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 180

Query: 842  LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
            LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR
Sbjct: 181  LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 240

Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 1201
            QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL
Sbjct: 241  QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQLGGAEPVKRCGKSALFQL 300

Query: 1202 AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 1381
            AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA
Sbjct: 301  AEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKMEKPDEARLQKEADVEKSA 360

Query: 1382 KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 1561
            KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS
Sbjct: 361  KENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKCSHFPDFSYSASSKIIIS 420

Query: 1562 DVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHGNDKSTPKKTCKKRQSSE 1741
            DVPSRKDHLCHPHGIMIIEDPTTLN             MDRHGNDKSTPKKTCKKRQSSE
Sbjct: 421  DVPSRKDHLCHPHGIMIIEDPTTLNKPEKLKKKKKKSKMDRHGNDKSTPKKTCKKRQSSE 480

Query: 1742 SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAXXXXXXXXXXXXXXXX 1921
            SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDA                
Sbjct: 481  SDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILDAKPPKKKVKSREKKMSK 540

Query: 1922 XXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 2101
                       PPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH
Sbjct: 541  EKSSDTTKESRPPDFLSISASKNIPGEVPEGIKAEPLTPTEDALPPSLPGQAKPEDSDCH 600

Query: 2102 RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXXXXXXXXDQEGCWNEESW 2281
            RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVD            D EGCWNEESW
Sbjct: 601  RKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSSGKGNSSDHEGCWNEESW 660

Query: 2282 TFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDXXXXXXXXXXX 2461
            TFNQIGTSGS         EDSLLGSTKLDEEFEKKFNSLPQYSPVTFD           
Sbjct: 661  TFNQIGTSGSKKFKKTKPKEDSLLGSTKLDEEFEKKFNSLPQYSPVTFDRKCVPVPRKKK 720

Query: 2462 XTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPEKGSGDKWSNKQFFLDAI 2641
             TGSMSSEPTKTS                              KGSGDKWSNKQFFLDAI
Sbjct: 721  KTGSMSSEPTKTS------------------------------KGSGDKWSNKQFFLDAI 750

Query: 2642 HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 2821
            HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD
Sbjct: 751  HPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQKRKARKTKITHLVRTAD 810

Query: 2822 GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPXXXXXXXXX 3001
            GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMP         
Sbjct: 811  GRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAETRSSTPEMPAVSAFFSLA 870

Query: 3002 XXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
                   MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 871  ALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 911


>ref|XP_003358873.1| PREDICTED: HMG box transcription factor BBX-like, partial [Sus
            scrofa].
          Length = 718

 Score = 1234 bits (3193), Expect = 0.0
 Identities = 628/718 (87%), Positives = 628/718 (87%)
 Frame = +2

Query: 971  ISSGTCRPDVSESSELRQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQL 1150
            ISSGTCRPDVSESSELRQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQL
Sbjct: 1    ISSGTCRPDVSESSELRQKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEISSNTSQL 60

Query: 1151 GGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKME 1330
            GGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKME
Sbjct: 61   GGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKEADGGRIKELEKGKEEREIKME 120

Query: 1331 KPDEARLQKEADVEKSAKENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKC 1510
            KPDEARLQKEADVEKSAKENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKC
Sbjct: 121  KPDEARLQKEADVEKSAKENGRDSKELRNFEELRMDDIMGIKMEDPKDIKKEELEEDQKC 180

Query: 1511 SHFPDFSYSASSKIIISDVPSRKDHLCHPHGIMIIEDPTTLNXXXXXXXXXXXXXMDRHG 1690
            SHFPDFSYSASSKIIISDVPSRKDHLCHPHGIMIIEDPTTLN             MDRHG
Sbjct: 181  SHFPDFSYSASSKIIISDVPSRKDHLCHPHGIMIIEDPTTLNKPEKLKKKKKKSKMDRHG 240

Query: 1691 NDKSTPKKTCKKRQSSESDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILD 1870
            NDKSTPKKTCKKRQSSESDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILD
Sbjct: 241  NDKSTPKKTCKKRQSSESDIESVIYTIEAVAKGDWGIEKLGETPRKKVRTSSSGKGSILD 300

Query: 1871 AXXXXXXXXXXXXXXXXXXXXXXXXXXXPPDFLSISASKNIPGEVPEGIKAEPLTPTEDA 2050
            A                           PPDFLSISASKNIPGEVPEGIKAEPLTPTEDA
Sbjct: 301  AKPPKKKVKSREKKMSKEKSSDTTKESRPPDFLSISASKNIPGEVPEGIKAEPLTPTEDA 360

Query: 2051 LPPSLPGQAKPEDSDCHRKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDXXXXXX 2230
            LPPSLPGQAKPEDSDCHRKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVD      
Sbjct: 361  LPPSLPGQAKPEDSDCHRKIETCGFRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSS 420

Query: 2231 XXXXXXDQEGCWNEESWTFNQIGTSGSXXXXXXXXXEDSLLGSTKLDEEFEKKFNSLPQY 2410
                  D EGCWNEESWTFNQIGTSGS         EDSLLGSTKLDEEFEKKFNSLPQY
Sbjct: 421  GKGNSSDHEGCWNEESWTFNQIGTSGSKKFKKTKPKEDSLLGSTKLDEEFEKKFNSLPQY 480

Query: 2411 SPVTFDXXXXXXXXXXXXTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPE 2590
            SPVTFD            TGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPE
Sbjct: 481  SPVTFDRKCVPVPRKKKKTGSMSSEPTKTSKGPFQSQKKNLFHKIVSKYKHKKEKPNVPE 540

Query: 2591 KGSGDKWSNKQFFLDAIHPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQ 2770
            KGSGDKWSNKQFFLDAIHPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQ
Sbjct: 541  KGSGDKWSNKQFFLDAIHPTEAIFSEDKNTTEPAYKVKNAPSIPNTPEPTTMQEPLVGSQ 600

Query: 2771 KRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAET 2950
            KRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAET
Sbjct: 601  KRKARKTKITHLVRTADGRVSPAGGTLDDKPKEQLQRSLPKVTEAGCNDECSHNREAAET 660

Query: 2951 RSSTPEMPXXXXXXXXXXXXXXXXMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 3124
            RSSTPEMP                MENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ
Sbjct: 661  RSSTPEMPAVSAFFSLAALAEVAAMENVHRGQRSTPLTHDGQPKEMPQAPVLISCADQ 718


>ref|XP_003132735.2| PREDICTED: HMG box transcription factor BBX-like [Sus scrofa].
          Length = 408

 Score =  541 bits (1395), Expect = e-154
 Identities = 264/275 (96%), Positives = 264/275 (96%)
 Frame = +2

Query: 302  MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSXXXXXXXXXXXIDKVQLLGA 481
            MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFS           IDKVQLLGA
Sbjct: 1    MKGSNRNKDHSAEGEGAGKRPKRKCLQWHPLLAKKLLDFSEEEEEEDEEEDIDKVQLLGA 60

Query: 482  DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 661
            DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
Sbjct: 61   DGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV 120

Query: 662  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 841
            LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD
Sbjct: 121  LDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSSRD 180

Query: 842  LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 1021
            LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR
Sbjct: 181  LPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTPEISSGTCRPDVSESSELR 240

Query: 1022 QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAE 1126
            QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAE
Sbjct: 241  QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAE 275


>ref|XP_003355979.1| PREDICTED: protein capicua homolog [Sus scrofa].
          Length = 788

 Score =  112 bits (279), Expect = 2e-24
 Identities = 87/285 (30%), Positives = 128/285 (44%), Gaps = 16/285 (5%)
 Frame = +2

Query: 461  KVQLLGADGLEQDVAETEDDESPEQRA----RRPMNAFLLFCKRHRSLVRQEHPRLDNRG 628
            + Q L A   E+D +  +D  SP +R     RRPMNAF++F KRHR+LV Q HP  DNR 
Sbjct: 441  RTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRT 500

Query: 629  ATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKK 808
             +KIL +WW  L PKEKQKY D+A + K+A  KA+P +KWC   NK  K  +    P   
Sbjct: 501  VSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWC---NKDRKKSSSEAKPTSL 557

Query: 809  LWAFPSDSSRDLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLA-GEHALGTPEISS-- 979
              A     +R+  S  +T T   P ++  +   T    LS    A G  + G   + +  
Sbjct: 558  GLAGGHKETRE-RSMSETGTAAAPGVSSELLSVTAQTLLSSDTKAPGSASCGAERLHTVG 616

Query: 980  --GTCRPDVSESSELR-------QKSPLFQFAEISSSTSHPDAPSKQCQASALFQFAEIS 1132
              G+ RP     S +            L +  ++ S  +    P    Q  A   FA   
Sbjct: 617  GPGSARPRAFSHSGVHGLDGGEVDSQALQELTQMVSGPASYSGPKPSTQYGAPGPFATPG 676

Query: 1133 SNTSQLGGAEPVKRCGKSALFQLAEMCLASEGVKMEESKLIKAKE 1267
               +      P     +++  Q A    ASE +  +E +++  +E
Sbjct: 677  EGGNLAASGRPPLLPTRASRSQRA----ASEDMTSDEERMVICEE 717


>ref|XP_003359100.1| PREDICTED: transcription factor SOX-7 [Sus scrofa].
          Length = 389

 Score = 65.1 bits (157), Expect = 3e-10
 Identities = 51/173 (29%), Positives = 72/173 (41%), Gaps = 10/173 (5%)
 Frame = +2

Query: 479 ADGLEQDVA-ETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW 655
           +DGL    A     D+  E R RRPMNAF+++ K  R  +  ++P L N   +K+L   W
Sbjct: 24  SDGLSPPAAPRPPGDKGSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSW 83

Query: 656 AVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFPSDSS 835
             L   +K+ Y D A+  +   M+  P YK+ P   K  K     V+P   L +   D +
Sbjct: 84  KALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKRLCKRVDPGFLLSSLSRDQN 143

Query: 836 ---------RDLPSPKKTKTEEMPQLNFGMADPTQMGGLSMLLLAGEHALGTP 967
                    R  P  K+ + E  P    G A P   G        G    GTP
Sbjct: 144 ALPEKRSGGRGAPGEKEDRGEYSP----GSALPGLRGCFHEGPAGGSGGGGTP 192


>ref|XP_001928411.1| PREDICTED: transcription factor SOX-17-like [Sus scrofa].
          Length = 407

 Score = 60.8 bits (146), Expect = 5e-09
 Identities = 30/82 (36%), Positives = 46/82 (56%)
 Frame = +2

Query: 530 EQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEY 709
           E R RRPMNAF+++ K  R  + Q++P L N   +K+L   W  L   EK+ + + A+  
Sbjct: 65  ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERL 124

Query: 710 KDAFMKANPGYKWCPTTNKPVK 775
           +   M+ +P YK+ P   K VK
Sbjct: 125 RVQHMQDHPNYKYRPRRRKQVK 146


>ref|XP_003131095.1| PREDICTED: transcription factor SOX-21-like [Sus scrofa].
          Length = 276

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 32/99 (32%), Positives = 50/99 (50%)
 Frame = +2

Query: 527 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKE 706
           P    +RPMNAF+++ +  R  + QE+P++ N   +K L   W +L   EK+ + D AK 
Sbjct: 4   PVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKR 63

Query: 707 YKDAFMKANPGYKWCPTTNKPVKSPTPTVNPRKKLWAFP 823
            +   MK +P YK+ P          P    +K  +AFP
Sbjct: 64  LRAMHMKEHPDYKYRPRRK-------PKTLLKKDKFAFP 95


>ref|NP_001116669.1| transcription factor SOX-2 [Sus scrofa].
          Length = 319

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 29/93 (31%), Positives = 49/93 (52%)
 Frame = +2

Query: 476 GADGLEQDVAETEDDESPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW 655
           G  G     A   + ++   R +RPMNAF+++ +  R  + QE+P++ N   ++ L   W
Sbjct: 22  GGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISRRLGAEW 81

Query: 656 AVLDPKEKQKYTDMAKEYKDAFMKANPGYKWCP 754
            +L   EK+ + D AK  +   MK +P YK+ P
Sbjct: 82  KLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 114


>ref|XP_003360512.1| PREDICTED: transcription factor SOX-3-like [Sus scrofa].
          Length = 448

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 27/77 (35%), Positives = 43/77 (55%)
 Frame = +2

Query: 524 SPEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAK 703
           S + R +RPMNAF+++ +  R  +  E+P++ N   +K L   W +L   EK+ + D AK
Sbjct: 137 SDQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAK 196

Query: 704 EYKDAFMKANPGYKWCP 754
             +   MK  P YK+ P
Sbjct: 197 RLRAVHMKEYPDYKYRP 213


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 81,746,725
Number of extensions: 2163048
Number of successful extensions: 8091
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 8023
Number of HSP's successfully gapped: 22
Length of query: 1178
Length of database: 11,343,932
Length adjustment: 110
Effective length of query: 1068
Effective length of database: 8,605,262
Effective search space: 9190419816
Effective search space used: 9190419816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002218
         (3534 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH118763.1| Sus scrofa unplaced genomic scaffold ChrUScaf2282     1072   0.0  
Sscrofa_Chr13                                                        1072   0.0  

>gb|JH118763.1| Sus scrofa unplaced genomic scaffold ChrUScaf2282
          Length = 217678

 Score = 1072 bits (541), Expect = 0.0
 Identities = 541/541 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1677  tggatcgacatggaaatgataaatccacacccaagaagacttgtaaaaagaggcagtcct 1736
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98924 tggatcgacatggaaatgataaatccacacccaagaagacttgtaaaaagaggcagtcct 98983

                                                                         
Query: 1737  cagagtctgacattgagagtgtcatatacaccattgaagctgttgcaaagggagactggg 1796
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98984 cagagtctgacattgagagtgtcatatacaccattgaagctgttgcaaagggagactggg 99043

                                                                         
Query: 1797  gcatcgagaagcttggagaaacccctcgcaagaaggtccgcacatcctccagtggcaagg 1856
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99044 gcatcgagaagcttggagaaacccctcgcaagaaggtccgcacatcctccagtggcaagg 99103

                                                                         
Query: 1857  gaagcattttggatgccaagccaccaaagaaaaaagtgaaatccagagagaagaaaatgt 1916
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99104 gaagcattttggatgccaagccaccaaagaaaaaagtgaaatccagagagaagaaaatgt 99163

                                                                         
Query: 1917  caaaggagaaatcctcggacaccaccaaagagtcgagacctccagattttctcagtattt 1976
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99164 caaaggagaaatcctcggacaccaccaaagagtcgagacctccagattttctcagtattt 99223

                                                                         
Query: 1977  ctgccagcaagaacattcctggggaggtgccagagggtataaaagcagaaccgttgaccc 2036
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99224 ctgccagcaagaacattcctggggaggtgccagagggtataaaagcagaaccgttgaccc 99283

                                                                         
Query: 2037  ccacggaggatgcgctaccacccagcctacctggacaggccaagcctgaggacagtgact 2096
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99284 ccacggaggatgcgctaccacccagcctacctggacaggccaagcctgaggacagtgact 99343

                                                                         
Query: 2097  gtcacagaaaaatagagacttgtggcttccggaaatccgagaggtcttgcaaaggtgctc 2156
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99344 gtcacagaaaaatagagacttgtggcttccggaaatccgagaggtcttgcaaaggtgctc 99403

                                                                         
Query: 2157  tttataaaaccctggtgtctgagggcatgctcacctctctgcgagctaatgttgacagag 2216
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99404 tttataaaaccctggtgtctgagggcatgctcacctctctgcgagctaatgttgacagag 99463

              
Query: 2217  g 2217
             |
Sbjct: 99464 g 99464



 Score =  914 bits (461), Expect = 0.0
 Identities = 470/473 (99%)
 Strand = Plus / Plus

                                                                          
Query: 3036   acagaggtcagaggtcaactccgctcacccatgatggacagccaaaagagatgccacagg 3095
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129494 acagaggtcagaggtcaactccgctcacccatgatggacagccaaaagagatgccacagg 129553

                                                                          
Query: 3096   ctcctgtacttatttcctgtgctgaccagtgaagcgccctttaattgtaaaacattgtgc 3155
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129554 ctcctgtacttatttcctgtgctgaccagtgaagcgccctttaattgtaaaacattgtgc 129613

                                                                          
Query: 3156   tttacctactaccctagccttgtctttacagagggatgctagtgagtccatgtggtggaa 3215
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129614 tttacctactaccctagccttgtctttacagagggatgctagtgagtccatgtggtggaa 129673

                                                                          
Query: 3216   aatacagactgcaaacaagtgcttgttgccccacacggcccagattcacttgacgcagaa 3275
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129674 aatacagactgcaaacaagtgcttgttgccccacacggcccagattcacttgacgcagaa 129733

                                                                          
Query: 3276   gttggcatcctgggccagtttgttctttcagagccctgagtctttgagggtgatgttctt 3335
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129734 gttggcatcctgggccagtttgttctttcagagccctgagtctttgagggtgatgttctt 129793

                                                                          
Query: 3336   tgtctgataatgagcagaaacgggataatcctagagctttgcttcctattgaaggctttt 3395
              |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 129794 tgtctgataatgagcagaaacgggataatcctagagctttgctttctattgaaggctttt 129853

                                                                          
Query: 3396   gatggtaataggtggtaacttggtaaaaggctgcctttactgtagctcatccagcacctc 3455
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 129854 gatggtaataggtggtaacttggtaaaaggctgcctttactgtagctcatccagcatctc 129913

                                                                   
Query: 3456   ttttaccaaccagagagcgtgaaactagtttcgtatattacctagttattctt 3508
              ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 129914 ttttaccaaccagagagtgtgaaactagtttcgtatattacctagttattctt 129966



 Score =  611 bits (308), Expect = e-171
 Identities = 308/308 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1334  ccagatgaggccaggttacagaaagaagcagatgttgaaaaatcagccaaggaaaatgga 1393
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98581 ccagatgaggccaggttacagaaagaagcagatgttgaaaaatcagccaaggaaaatgga 98640

                                                                         
Query: 1394  agagattctaaagaattaagaaattttgaggagctgcgaatggatgatataatgggaata 1453
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98641 agagattctaaagaattaagaaattttgaggagctgcgaatggatgatataatgggaata 98700

                                                                         
Query: 1454  aaaatggaagatcccaaagatattaaaaaggaagaattagaggaagatcaaaaatgtagt 1513
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98701 aaaatggaagatcccaaagatattaaaaaggaagaattagaggaagatcaaaaatgtagt 98760

                                                                         
Query: 1514  cacttccctgacttttcttactctgccagtagcaagataataataagtgatgttcccagt 1573
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98761 cacttccctgacttttcttactctgccagtagcaagataataataagtgatgttcccagt 98820

                                                                         
Query: 1574  agaaaagatcatttgtgccatcctcatggaattatgatcattgaggatcccaccacactt 1633
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98821 agaaaagatcatttgtgccatcctcatggaattatgatcattgaggatcccaccacactt 98880

                     
Query: 1634  aacaagcc 1641
             ||||||||
Sbjct: 98881 aacaagcc 98888



 Score =  486 bits (245), Expect = e-134
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                         
Query: 462   aggttcagcttcttggggctgatggcctagagcaagatgttgctgagactgaagatgatg 521
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48615 aggttcagcttcttggggctgatggcctagagcaagatgttgctgagactgaagatgatg 48674

                                                                         
Query: 522   aatcaccagaacagcgagcccggagaccaatgaatgcatttctcttattttgcaaacgtc 581
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48675 aatcaccagaacagcgagcccggagaccaatgaatgcatttctcttattttgcaaacgtc 48734

                                                                         
Query: 582   atcgctcccttgtacgtcaagaacaccccagacttgataacagaggtgctaccaagatac 641
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48735 atcgctcccttgtacgtcaagaacaccccagacttgataacagaggtgctaccaagatac 48794

                                                                         
Query: 642   tagctgattggtgggctgttctcgatccaaaggaaaagcagaaatacacagacatggcca 701
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48795 tagctgattggtgggctgttctcgatccaaaggaaaagcagaaatacacagacatggcca 48854

                  
Query: 702   aggag 706
             |||||
Sbjct: 48855 aggag 48859



 Score =  396 bits (200), Expect = e-107
 Identities = 200/200 (100%)
 Strand = Plus / Plus

                                                                          
Query: 2653   agccatattttcagaagacaaaaacaccacagagcctgcttataaggttaaaaatgcccc 2712
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122325 agccatattttcagaagacaaaaacaccacagagcctgcttataaggttaaaaatgcccc 122384

                                                                          
Query: 2713   atccattcccaacactccagagccaacaacaatgcaagaacctttggtgggcagccaaaa 2772
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122385 atccattcccaacactccagagccaacaacaatgcaagaacctttggtgggcagccaaaa 122444

                                                                          
Query: 2773   gagaaaagcaaggaaaaccaagatcacacaccttgtcaggacggcagatggccgggtatc 2832
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122445 gagaaaagcaaggaaaaccaagatcacacaccttgtcaggacggcagatggccgggtatc 122504

                                  
Query: 2833   accagcaggaggtactttgg 2852
              ||||||||||||||||||||
Sbjct: 122505 accagcaggaggtactttgg 122524



 Score =  365 bits (184), Expect = 1e-97
 Identities = 187/188 (99%)
 Strand = Plus / Plus

                                                                          
Query: 2852   gatgacaaaccaaaggaacaactgcagaggagtctccctaaagtgaccgaggcaggctgc 2911
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124552 gatgacaaaccaaaggaacaactgcagaggagtctccctaaagtgaccgaggcaggctgc 124611

                                                                          
Query: 2912   aatgatgaatgctcgcacaaccgggaggccgcggagacgcgcagcagcaccccggagatg 2971
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124612 aatgatgaatgctcgcacaaccgggaggccgcggagacgcgcagcagcaccccggagatg 124671

                                                                          
Query: 2972   ccagctgtgtctgccttcttcagcctcgcggcactggctaaggtggctgccatggaaaat 3031
              ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 124672 ccagctgtgtctgccttcttcagcctcgcggcactggctgaggtggctgccatggaaaat 124731

                      
Query: 3032   gtgcacag 3039
              ||||||||
Sbjct: 124732 gtgcacag 124739



 Score =  272 bits (137), Expect = 1e-69
 Identities = 140/141 (99%)
 Strand = Plus / Plus

                                                                          
Query: 2215   agggaaacgaagctcaggaaaaggaaactcttctgatcaggaagggtgttggaatgagga 2274
              ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 100428 agggaaacgaagctcaggaaaaggaaactcttctgatcacgaagggtgttggaatgagga 100487

                                                                          
Query: 2275   aagttggacgttcaaccagattgggaccagtggaagtaagaagttcaagaagacaaagcc 2334
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100488 aagttggacgttcaaccagattgggaccagtggaagtaagaagttcaagaagacaaagcc 100547

                                   
Query: 2335   aaaggaagactctctccttgg 2355
              |||||||||||||||||||||
Sbjct: 100548 aaaggaagactctctccttgg 100568



 Score =  256 bits (129), Expect = 7e-65
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                         
Query: 292   ggtcacagtaatgaaaggcagtaatagaaataaagatcattcagcagaaggagaaggggc 351
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42684 ggtcacagtaatgaaaggcagtaatagaaataaagatcattcagcagaaggagaaggggc 42743

                                                                         
Query: 352   tggaaaacgaccaaaacgaaagtgtcttcagtggcatccattgctcgcaaaaaaacttct 411
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42744 tggaaaacgaccaaaacgaaagtgtcttcagtggcatccattgctcgcaaaaaaacttct 42803

                      
Query: 412   tgatttttc 420
             |||||||||
Sbjct: 42804 tgatttttc 42812



 Score =  230 bits (116), Expect = 4e-57
 Identities = 140/152 (92%)
 Strand = Plus / Plus

                                                                          
Query: 2355   gctcaacaaagctggatgaagaatttgaaaagaaattcaacagcctccctcaatatagtc 2414
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104153 gctcaacaaagctggatgaagaatttgaaaagaaattcaacagcctccctcaatatagtc 104212

                                                                          
Query: 2415   ctgttacatttgaccggaaatgtgtacctgtcccaagnnnnnnnnnnnngacaggcagca 2474
              |||||||||||||||||||||||||||||||||||||            |||||||||||
Sbjct: 104213 ctgttacatttgaccggaaatgtgtacctgtcccaagaaaaaagaaaaagacaggcagca 104272

                                              
Query: 2475   tgtcctcagaaccaactaaaaccagcaaaggt 2506
              ||||||||||||||||||||||||||||||||
Sbjct: 104273 tgtcctcagaaccaactaaaaccagcaaaggt 104304



 Score =  184 bits (93), Expect = 2e-43
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                          
Query: 2503   aggtcctttccagtctcagaaaaagaacttattccacaaaattgtcagcaaatataagca 2562
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112884 aggtcctttccagtctcagaaaaagaacttattccacaaaattgtcagcaaatataagca 112943

                                               
Query: 2563   caaaaaggagaagcctaatgttccggaaaaagg 2595
              |||||||||||||||||||||||||||||||||
Sbjct: 112944 caaaaaggagaagcctaatgttccggaaaaagg 112976



 Score =  165 bits (83), Expect = 2e-37
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                         
Query: 969   agatatcttctggcacttgtaggcctgatgtttcagaatcatctgaattgcgtcagaagt 1028
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75050 agatatcttctggcacttgtaggcctgatgtttcagaatcatctgaattgcgtcagaagt 75109

                                    
Query: 1029  caccattatttcagtttgctgag 1051
             |||||||||||||||||||||||
Sbjct: 75110 caccattatttcagtttgctgag 75132



 Score =  165 bits (83), Expect = 2e-37
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1125  agatttcttcaaacacttcacagttgggtggtgctgaacctgtaaaacgctgtggaaagt 1184
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86011 agatttcttcaaacacttcacagttgggtggtgctgaacctgtaaaacgctgtggaaagt 86070

                                    
Query: 1185  ctgcactctttcagctggcagag 1207
             |||||||||||||||||||||||
Sbjct: 86071 ctgcactctttcagctggcagag 86093



 Score =  153 bits (77), Expect = 8e-34
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1050  agatatcttcaagtacatcccatcctgatgctccttcaaaacagtgtcaagcatcagcct 1109
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78374 agatatcttcaagtacatcccatcctgatgctccttcaaaacagtgtcaagcatcagcct 78433

                              
Query: 1110  tgtttcagtttgcagag 1126
             |||||||||||||||||
Sbjct: 78434 tgtttcagtttgcagag 78450



 Score =  137 bits (69), Expect = 5e-29
 Identities = 69/69 (100%)
 Strand = Plus / Plus

                                                                         
Query: 902   gatcctactcagatgggaggcctgagcatgctgcttttagctggagaacatgctcttggc 961
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60149 gatcctactcagatgggaggcctgagcatgctgcttttagctggagaacatgctcttggc 60208

                      
Query: 962   acaccagag 970
             |||||||||
Sbjct: 60209 acaccagag 60217



 Score =  123 bits (62), Expect = 7e-25
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                          
Query: 2593   aggaagtggggataaatggtcaaacaagcaattcttcttggatgccattcacccaacaga 2652
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114444 aggaagtggggataaatggtcaaacaagcaattcttcttggatgccattcacccaacaga 114503

                
Query: 2653   ag 2654
              ||
Sbjct: 114504 ag 114505



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                              
Query: 1206  agatgtgcctggcatcagagggggtgaaaatggaggaatcaaaactaat 1254
             |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98453 agatgtgcctggcatcagagggggtgaaaatggaggaatcaaaactaat 98501


>Sscrofa_Chr13 
||          Length = 218635234

 Score = 1072 bits (541), Expect = 0.0
 Identities = 541/541 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1677      tggatcgacatggaaatgataaatccacacccaagaagacttgtaaaaagaggcagtcct 1736
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790425 tggatcgacatggaaatgataaatccacacccaagaagacttgtaaaaagaggcagtcct 160790366

                                                                             
Query: 1737      cagagtctgacattgagagtgtcatatacaccattgaagctgttgcaaagggagactggg 1796
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790365 cagagtctgacattgagagtgtcatatacaccattgaagctgttgcaaagggagactggg 160790306

                                                                             
Query: 1797      gcatcgagaagcttggagaaacccctcgcaagaaggtccgcacatcctccagtggcaagg 1856
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790305 gcatcgagaagcttggagaaacccctcgcaagaaggtccgcacatcctccagtggcaagg 160790246

                                                                             
Query: 1857      gaagcattttggatgccaagccaccaaagaaaaaagtgaaatccagagagaagaaaatgt 1916
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790245 gaagcattttggatgccaagccaccaaagaaaaaagtgaaatccagagagaagaaaatgt 160790186

                                                                             
Query: 1917      caaaggagaaatcctcggacaccaccaaagagtcgagacctccagattttctcagtattt 1976
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790185 caaaggagaaatcctcggacaccaccaaagagtcgagacctccagattttctcagtattt 160790126

                                                                             
Query: 1977      ctgccagcaagaacattcctggggaggtgccagagggtataaaagcagaaccgttgaccc 2036
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790125 ctgccagcaagaacattcctggggaggtgccagagggtataaaagcagaaccgttgaccc 160790066

                                                                             
Query: 2037      ccacggaggatgcgctaccacccagcctacctggacaggccaagcctgaggacagtgact 2096
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790065 ccacggaggatgcgctaccacccagcctacctggacaggccaagcctgaggacagtgact 160790006

                                                                             
Query: 2097      gtcacagaaaaatagagacttgtggcttccggaaatccgagaggtcttgcaaaggtgctc 2156
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790005 gtcacagaaaaatagagacttgtggcttccggaaatccgagaggtcttgcaaaggtgctc 160789946

                                                                             
Query: 2157      tttataaaaccctggtgtctgagggcatgctcacctctctgcgagctaatgttgacagag 2216
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160789945 tttataaaaccctggtgtctgagggcatgctcacctctctgcgagctaatgttgacagag 160789886

                  
Query: 2217      g 2217
                 |
Sbjct: 160789885 g 160789885



 Score =  914 bits (461), Expect = 0.0
 Identities = 470/473 (99%)
 Strand = Plus / Minus

                                                                             
Query: 3036      acagaggtcagaggtcaactccgctcacccatgatggacagccaaaagagatgccacagg 3095
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160759402 acagaggtcagaggtcaactccgctcacccatgatggacagccaaaagagatgccacagg 160759343

                                                                             
Query: 3096      ctcctgtacttatttcctgtgctgaccagtgaagcgccctttaattgtaaaacattgtgc 3155
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160759342 ctcctgtacttatttcctgtgctgaccagtgaagcgccctttaattgtaaaacattgtgc 160759283

                                                                             
Query: 3156      tttacctactaccctagccttgtctttacagagggatgctagtgagtccatgtggtggaa 3215
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160759282 tttacctactaccctagccttgtctttacagagggatgctagtgagtccatgtggtggaa 160759223

                                                                             
Query: 3216      aatacagactgcaaacaagtgcttgttgccccacacggcccagattcacttgacgcagaa 3275
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160759222 aatacagactgcaaacaagtgcttgttgccccacacggcccagattcacttgacgcagaa 160759163

                                                                             
Query: 3276      gttggcatcctgggccagtttgttctttcagagccctgagtctttgagggtgatgttctt 3335
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160759162 gttggcatcctgggccagtttgttctttcagagccctgagtctttgagggtgatgttctt 160759103

                                                                             
Query: 3336      tgtctgataatgagcagaaacgggataatcctagagctttgcttcctattgaaggctttt 3395
                 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 160759102 tgtctgataatgagcagaaacgggataatcctagagctttgctttctattgaaggctttt 160759043

                                                                             
Query: 3396      gatggtaataggtggtaacttggtaaaaggctgcctttactgtagctcatccagcacctc 3455
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 160759042 gatggtaataggtggtaacttggtaaaaggctgcctttactgtagctcatccagcatctc 160758983

                                                                      
Query: 3456      ttttaccaaccagagagcgtgaaactagtttcgtatattacctagttattctt 3508
                 ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 160758982 ttttaccaaccagagagtgtgaaactagtttcgtatattacctagttattctt 160758930



 Score =  611 bits (308), Expect = e-171
 Identities = 308/308 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1334      ccagatgaggccaggttacagaaagaagcagatgttgaaaaatcagccaaggaaaatgga 1393
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790768 ccagatgaggccaggttacagaaagaagcagatgttgaaaaatcagccaaggaaaatgga 160790709

                                                                             
Query: 1394      agagattctaaagaattaagaaattttgaggagctgcgaatggatgatataatgggaata 1453
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790708 agagattctaaagaattaagaaattttgaggagctgcgaatggatgatataatgggaata 160790649

                                                                             
Query: 1454      aaaatggaagatcccaaagatattaaaaaggaagaattagaggaagatcaaaaatgtagt 1513
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790648 aaaatggaagatcccaaagatattaaaaaggaagaattagaggaagatcaaaaatgtagt 160790589

                                                                             
Query: 1514      cacttccctgacttttcttactctgccagtagcaagataataataagtgatgttcccagt 1573
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790588 cacttccctgacttttcttactctgccagtagcaagataataataagtgatgttcccagt 160790529

                                                                             
Query: 1574      agaaaagatcatttgtgccatcctcatggaattatgatcattgaggatcccaccacactt 1633
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790528 agaaaagatcatttgtgccatcctcatggaattatgatcattgaggatcccaccacactt 160790469

                         
Query: 1634      aacaagcc 1641
                 ||||||||
Sbjct: 160790468 aacaagcc 160790461



 Score =  486 bits (245), Expect = e-134
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                             
Query: 462       aggttcagcttcttggggctgatggcctagagcaagatgttgctgagactgaagatgatg 521
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160868707 aggttcagcttcttggggctgatggcctagagcaagatgttgctgagactgaagatgatg 160868648

                                                                             
Query: 522       aatcaccagaacagcgagcccggagaccaatgaatgcatttctcttattttgcaaacgtc 581
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160868647 aatcaccagaacagcgagcccggagaccaatgaatgcatttctcttattttgcaaacgtc 160868588

                                                                             
Query: 582       atcgctcccttgtacgtcaagaacaccccagacttgataacagaggtgctaccaagatac 641
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160868587 atcgctcccttgtacgtcaagaacaccccagacttgataacagaggtgctaccaagatac 160868528

                                                                             
Query: 642       tagctgattggtgggctgttctcgatccaaaggaaaagcagaaatacacagacatggcca 701
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160868527 tagctgattggtgggctgttctcgatccaaaggaaaagcagaaatacacagacatggcca 160868468

                      
Query: 702       aggag 706
                 |||||
Sbjct: 160868467 aggag 160868463



 Score =  396 bits (200), Expect = e-107
 Identities = 200/200 (100%)
 Strand = Plus / Minus

                                                                             
Query: 2653      agccatattttcagaagacaaaaacaccacagagcctgcttataaggttaaaaatgcccc 2712
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160766474 agccatattttcagaagacaaaaacaccacagagcctgcttataaggttaaaaatgcccc 160766415

                                                                             
Query: 2713      atccattcccaacactccagagccaacaacaatgcaagaacctttggtgggcagccaaaa 2772
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160766414 atccattcccaacactccagagccaacaacaatgcaagaacctttggtgggcagccaaaa 160766355

                                                                             
Query: 2773      gagaaaagcaaggaaaaccaagatcacacaccttgtcaggacggcagatggccgggtatc 2832
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160766354 gagaaaagcaaggaaaaccaagatcacacaccttgtcaggacggcagatggccgggtatc 160766295

                                     
Query: 2833      accagcaggaggtactttgg 2852
                 ||||||||||||||||||||
Sbjct: 160766294 accagcaggaggtactttgg 160766275



 Score =  392 bits (198), Expect = e-106
 Identities = 198/198 (100%)
 Strand = Plus / Minus

                                                                             
Query: 705       agtataaagatgcatttatgaaagcaaatcctggctacaaatggtgtcctaccacaaaca 764
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160860541 agtataaagatgcatttatgaaagcaaatcctggctacaaatggtgtcctaccacaaaca 160860482

                                                                             
Query: 765       agcctgtcaaatccccaacacccactgtcaatccacgaaagaaactgtgggccttcccat 824
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160860481 agcctgtcaaatccccaacacccactgtcaatccacgaaagaaactgtgggccttcccat 160860422

                                                                             
Query: 825       ccgactcttcaagagacttgccaagccccaagaaaacaaagactgaagaaatgcctcagc 884
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160860421 ccgactcttcaagagacttgccaagccccaagaaaacaaagactgaagaaatgcctcagc 160860362

                                   
Query: 885       ttaactttggaatggccg 902
                 ||||||||||||||||||
Sbjct: 160860361 ttaactttggaatggccg 160860344



 Score =  365 bits (184), Expect = 1e-97
 Identities = 187/188 (99%)
 Strand = Plus / Minus

                                                                             
Query: 2852      gatgacaaaccaaaggaacaactgcagaggagtctccctaaagtgaccgaggcaggctgc 2911
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160764247 gatgacaaaccaaaggaacaactgcagaggagtctccctaaagtgaccgaggcaggctgc 160764188

                                                                             
Query: 2912      aatgatgaatgctcgcacaaccgggaggccgcggagacgcgcagcagcaccccggagatg 2971
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160764187 aatgatgaatgctcgcacaaccgggaggccgcggagacgcgcagcagcaccccggagatg 160764128

                                                                             
Query: 2972      ccagctgtgtctgccttcttcagcctcgcggcactggctaaggtggctgccatggaaaat 3031
                 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 160764127 ccagctgtgtctgccttcttcagcctcgcggcactggctgaggtggctgccatggaaaat 160764068

                         
Query: 3032      gtgcacag 3039
                 ||||||||
Sbjct: 160764067 gtgcacag 160764060



 Score =  272 bits (137), Expect = 1e-69
 Identities = 140/141 (99%)
 Strand = Plus / Minus

                                                                             
Query: 2215      agggaaacgaagctcaggaaaaggaaactcttctgatcaggaagggtgttggaatgagga 2274
                 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 160788921 agggaaacgaagctcaggaaaaggaaactcttctgatcacgaagggtgttggaatgagga 160788862

                                                                             
Query: 2275      aagttggacgttcaaccagattgggaccagtggaagtaagaagttcaagaagacaaagcc 2334
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160788861 aagttggacgttcaaccagattgggaccagtggaagtaagaagttcaagaagacaaagcc 160788802

                                      
Query: 2335      aaaggaagactctctccttgg 2355
                 |||||||||||||||||||||
Sbjct: 160788801 aaaggaagactctctccttgg 160788781



 Score =  256 bits (129), Expect = 7e-65
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                             
Query: 292       ggtcacagtaatgaaaggcagtaatagaaataaagatcattcagcagaaggagaaggggc 351
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160875288 ggtcacagtaatgaaaggcagtaatagaaataaagatcattcagcagaaggagaaggggc 160875229

                                                                             
Query: 352       tggaaaacgaccaaaacgaaagtgtcttcagtggcatccattgctcgcaaaaaaacttct 411
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160875228 tggaaaacgaccaaaacgaaagtgtcttcagtggcatccattgctcgcaaaaaaacttct 160875169

                          
Query: 412       tgatttttc 420
                 |||||||||
Sbjct: 160875168 tgatttttc 160875160



 Score =  230 bits (116), Expect = 4e-57
 Identities = 140/152 (92%)
 Strand = Plus / Minus

                                                                             
Query: 2355      gctcaacaaagctggatgaagaatttgaaaagaaattcaacagcctccctcaatatagtc 2414
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160785028 gctcaacaaagctggatgaagaatttgaaaagaaattcaacagcctccctcaatatagtc 160784969

                                                                             
Query: 2415      ctgttacatttgaccggaaatgtgtacctgtcccaagnnnnnnnnnnnngacaggcagca 2474
                 |||||||||||||||||||||||||||||||||||||            |||||||||||
Sbjct: 160784968 ctgttacatttgaccggaaatgtgtacctgtcccaagaaaaaagaaaaagacaggcagca 160784909

                                                 
Query: 2475      tgtcctcagaaccaactaaaaccagcaaaggt 2506
                 ||||||||||||||||||||||||||||||||
Sbjct: 160784908 tgtcctcagaaccaactaaaaccagcaaaggt 160784877



 Score =  184 bits (93), Expect = 2e-43
 Identities = 93/93 (100%)
 Strand = Plus / Minus

                                                                             
Query: 2503      aggtcctttccagtctcagaaaaagaacttattccacaaaattgtcagcaaatataagca 2562
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160776080 aggtcctttccagtctcagaaaaagaacttattccacaaaattgtcagcaaatataagca 160776021

                                                  
Query: 2563      caaaaaggagaagcctaatgttccggaaaaagg 2595
                 |||||||||||||||||||||||||||||||||
Sbjct: 160776020 caaaaaggagaagcctaatgttccggaaaaagg 160775988



 Score =  165 bits (83), Expect = 2e-37
 Identities = 83/83 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1125      agatttcttcaaacacttcacagttgggtggtgctgaacctgtaaaacgctgtggaaagt 1184
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160806417 agatttcttcaaacacttcacagttgggtggtgctgaacctgtaaaacgctgtggaaagt 160806358

                                        
Query: 1185      ctgcactctttcagctggcagag 1207
                 |||||||||||||||||||||||
Sbjct: 160806357 ctgcactctttcagctggcagag 160806335



 Score =  165 bits (83), Expect = 2e-37
 Identities = 83/83 (100%)
 Strand = Plus / Minus

                                                                             
Query: 969       agatatcttctggcacttgtaggcctgatgtttcagaatcatctgaattgcgtcagaagt 1028
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160817173 agatatcttctggcacttgtaggcctgatgtttcagaatcatctgaattgcgtcagaagt 160817114

                                        
Query: 1029      caccattatttcagtttgctgag 1051
                 |||||||||||||||||||||||
Sbjct: 160817113 caccattatttcagtttgctgag 160817091



 Score =  153 bits (77), Expect = 8e-34
 Identities = 77/77 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1050      agatatcttcaagtacatcccatcctgatgctccttcaaaacagtgtcaagcatcagcct 1109
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160813849 agatatcttcaagtacatcccatcctgatgctccttcaaaacagtgtcaagcatcagcct 160813790

                                  
Query: 1110      tgtttcagtttgcagag 1126
                 |||||||||||||||||
Sbjct: 160813789 tgtttcagtttgcagag 160813773



 Score =  153 bits (77), Expect = 8e-34
 Identities = 77/77 (100%)
 Strand = Plus / Minus

                                                                             
Query: 218       gaatcctgctgcatcacagaagctggaagttctgatgttccattgaaatcacaatggaaa 277
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160853937 gaatcctgctgcatcacagaagctggaagttctgatgttccattgaaatcacaatggaaa 160853878

                                  
Query: 278       gtcttgacttgactggt 294
                 |||||||||||||||||
Sbjct: 160853877 gtcttgacttgactggt 160853861



 Score =  147 bits (74), Expect = 5e-32
 Identities = 74/74 (100%)
 Strand = Plus / Minus

                                                                             
Query: 145       aggtcactaccatatgacaaaggctttgccgcagttcatcttcctctctgtgtactttcc 204
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161023676 aggtcactaccatatgacaaaggctttgccgcagttcatcttcctctctgtgtactttcc 161023617

                               
Query: 205       atttgccttcttgg 218
                 ||||||||||||||
Sbjct: 161023616 atttgccttcttgg 161023603



 Score =  137 bits (69), Expect = 5e-29
 Identities = 69/69 (100%)
 Strand = Plus / Minus

                                                                             
Query: 902       gatcctactcagatgggaggcctgagcatgctgcttttagctggagaacatgctcttggc 961
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160856630 gatcctactcagatgggaggcctgagcatgctgcttttagctggagaacatgctcttggc 160856571

                          
Query: 962       acaccagag 970
                 |||||||||
Sbjct: 160856570 acaccagag 160856562



 Score =  123 bits (62), Expect = 7e-25
 Identities = 62/62 (100%)
 Strand = Plus / Minus

                                                                             
Query: 2593      aggaagtggggataaatggtcaaacaagcaattcttcttggatgccattcacccaacaga 2652
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160774604 aggaagtggggataaatggtcaaacaagcaattcttcttggatgccattcacccaacaga 160774545

                   
Query: 2653      ag 2654
                 ||
Sbjct: 160774544 ag 160774543



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 49/49 (100%)
 Strand = Plus / Minus

                                                                  
Query: 1206      agatgtgcctggcatcagagggggtgaaaatggaggaatcaaaactaat 1254
                 |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160790896 agatgtgcctggcatcagagggggtgaaaatggaggaatcaaaactaat 160790848


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 116,120,125
Number of extensions: 363
Number of successful extensions: 363
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 37
Length of query: 3534
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 3512
Effective length of database: 2,808,408,574
Effective search space: 9863130911888
Effective search space used: 9863130911888
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 19 (38.2 bits)
S2: 30 (60.0 bits)