Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002231
(1563 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178165.1| ETS domain-containing protein Elk-1 [Bos tau... 507 e-143
Alignment gi|XP_002700115.1| PREDICTED: ELK1, member of ETS oncogene fami... 507 e-143
Alignment gi|NP_001075011.1| ETS domain-containing protein Elk-3 [Bos tau... 164 3e-40
Alignment gi|NP_001075081.1| ETS domain-containing protein Elk-4 [Bos tau... 162 8e-40
Alignment gi|NP_001039957.1| ETS translocation variant 1 [Bos taurus]. 116 6e-26
Alignment gi|NP_001179763.1| ETS translocation variant 5 [Bos taurus]. 115 1e-25
Alignment gi|XP_002684888.1| PREDICTED: ets variant 5 [Bos taurus]. 115 1e-25
Alignment gi|NP_001073683.1| protein C-ets-2 [Bos taurus]. 112 1e-24
Alignment gi|NP_001092576.1| protein C-ets-1 [Bos taurus]. 110 4e-24
Alignment gi|NP_001095653.1| transcriptional regulator ERG [Bos taurus]. 109 6e-24
>ref|NP_001178165.1| ETS domain-containing protein Elk-1 [Bos taurus].
Length = 440
Score = 507 bits (1305), Expect = e-143
Identities = 281/443 (63%), Positives = 282/443 (63%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL
Sbjct: 1 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 60
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCS EDCP QPE
Sbjct: 61 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSTEDCPPQPEVSVTSTLANAGATAVH 120
Query: 530 XXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTIXXXXXXXXXXXXXXXX 709
DTASGKPGT KGAGMAGPGGLARSSRNDYMRSGLYSTFTI
Sbjct: 121 AIPGDTASGKPGTLKGAGMAGPGGLARSSRNDYMRSGLYSTFTI---QSLQPQPPSHPRP 177
Query: 710 XTVLPNATPAGAAVXXXXXXXXXXXXXXXXXXXXXXXXXXQVILTPPEAPNLKSEEPNME 889
TVLPN PAG AV QVILTPPEAPNLKSEEPNME
Sbjct: 178 STVLPNTGPAGVAVPPSGSRSTSPNPLEACLEAEEAGLPLQVILTPPEAPNLKSEEPNME 237
Query: 890 PGLGRXXXXXXXXXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXXXXGVPARLPA 1069
PGLGR FVL GVPARL A
Sbjct: 238 PGLGRPLPPEVKVEEPKEELEAAASGEAGFVLEAVKAEPFEPKVDPEVPPAEGVPARLSA 297
Query: 1070 VLMETAAQVGGLAASTTSSTEIAQPQKGRKPRDXXXXXXXXXXXXXXXXRTPGSGTGSGL 1249
V METAAQ G L ASTT STEIAQPQKGRKPRD RTPGSGTGSGL
Sbjct: 298 VAMETAAQAGSLTASTTPSTEIAQPQKGRKPRDLELPLSPSLLGGPGPERTPGSGTGSGL 357
Query: 1250 QAPGXXXXXXXXXXXXXXXXXXXXXXXXXXIHFWSTLSPIAPRNPAKLSFQFPSSGSAQV 1429
QAPG IHFWSTLSPIAPR+PAKLSFQFPSSGSAQV
Sbjct: 358 QAPGPALTPSLLPTHTLTPVLLTPSSLPPSIHFWSTLSPIAPRSPAKLSFQFPSSGSAQV 417
Query: 1430 HIPSISVDGLSTPVVLSPGPQKP 1498
HIPSISVDGLSTPVVLSPGPQKP
Sbjct: 418 HIPSISVDGLSTPVVLSPGPQKP 440
>ref|XP_002700115.1| PREDICTED: ELK1, member of ETS oncogene family-like [Bos taurus].
Length = 440
Score = 507 bits (1305), Expect = e-143
Identities = 281/443 (63%), Positives = 282/443 (63%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL
Sbjct: 1 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 60
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCS EDCP QPE
Sbjct: 61 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSTEDCPPQPEVSVTSTLANAGATAVH 120
Query: 530 XXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTIXXXXXXXXXXXXXXXX 709
DTASGKPGT KGAGMAGPGGLARSSRNDYMRSGLYSTFTI
Sbjct: 121 AIPGDTASGKPGTLKGAGMAGPGGLARSSRNDYMRSGLYSTFTI---QSLQPQPPSHPRP 177
Query: 710 XTVLPNATPAGAAVXXXXXXXXXXXXXXXXXXXXXXXXXXQVILTPPEAPNLKSEEPNME 889
TVLPN PAG AV QVILTPPEAPNLKSEEPNME
Sbjct: 178 STVLPNTGPAGVAVPPSGSRSTSPNPLEACLEAEEAGLPLQVILTPPEAPNLKSEEPNME 237
Query: 890 PGLGRXXXXXXXXXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXXXXGVPARLPA 1069
PGLGR FVL GVPARL A
Sbjct: 238 PGLGRPLPPEVKVEEPKEELEAAASGEAGFVLEAVKAEPFEPKVDPEVPPAEGVPARLSA 297
Query: 1070 VLMETAAQVGGLAASTTSSTEIAQPQKGRKPRDXXXXXXXXXXXXXXXXRTPGSGTGSGL 1249
V METAAQ G L ASTT STEIAQPQKGRKPRD RTPGSGTGSGL
Sbjct: 298 VAMETAAQAGSLTASTTPSTEIAQPQKGRKPRDLELPLSPSLLGGPGPERTPGSGTGSGL 357
Query: 1250 QAPGXXXXXXXXXXXXXXXXXXXXXXXXXXIHFWSTLSPIAPRNPAKLSFQFPSSGSAQV 1429
QAPG IHFWSTLSPIAPR+PAKLSFQFPSSGSAQV
Sbjct: 358 QAPGPALTPSLLPTHTLTPVLLTPSSLPPSIHFWSTLSPIAPRSPAKLSFQFPSSGSAQV 417
Query: 1430 HIPSISVDGLSTPVVLSPGPQKP 1498
HIPSISVDGLSTPVVLSPGPQKP
Sbjct: 418 HIPSISVDGLSTPVVLSPGPQKP 440
>ref|NP_001075011.1| ETS domain-containing protein Elk-3 [Bos taurus].
Length = 402
Score = 164 bits (414), Expect = 3e-40
Identities = 89/164 (54%), Positives = 106/164 (64%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
M+ ++TLWQFLLQLL +Q + H+I WTS DG EFKL+ AEEVA+LWGLRKNKTNMNYDKL
Sbjct: 1 MESAITLWQFLLQLLLDQKHEHLICWTSNDG-EFKLLKAEEVAKLWGLRKNKTNMNYDKL 59
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYYDKNII+KV GQKFVYKFVS+PE+ E
Sbjct: 60 SRALRYYYDKNIIKKVIGQKFVYKFVSFPEILKMDPHAVEISRE---------------S 104
Query: 530 XXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTI 661
D+ P + A G L +SRN+Y+ SGLYS+FTI
Sbjct: 105 LLLQDSECKVPPEGREAHRHGLSALKSASRNEYIHSGLYSSFTI 148
Score = 52.8 bits (125), Expect = 9e-07
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Frame = +2
Query: 1340 IHFWSTLSPIAPRNPAKLS-----FQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQK 1495
IHFWS+LSP+AP +PA+L FQFP+ + + +P S+D ++PV+LS QK
Sbjct: 345 IHFWSSLSPVAPLSPARLQGPSTLFQFPTLLNGHMPVPIPSLDRAASPVLLSSNSQK 401
>ref|NP_001075081.1| ETS domain-containing protein Elk-4 [Bos taurus].
Length = 432
Score = 162 bits (410), Expect = 8e-40
Identities = 91/167 (54%), Positives = 105/167 (62%), Gaps = 3/167 (1%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
MD ++TLWQFLLQLL+E N H+I WTS +G EFKL+ AEEVARLWG+RKNK NMNYDKL
Sbjct: 1 MDSAITLWQFLLQLLKEPQNDHMICWTSNNG-EFKLLQAEEVARLWGIRKNKPNMNYDKL 59
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYY KNII+KV+GQKFVYKFVSYPE+ P
Sbjct: 60 SRALRYYYVKNIIKKVNGQKFVYKFVSYPEILNMD----PMTVGRVEGECEALSLSELSS 115
Query: 530 XXXXDTASG---KPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTI 661
D +G KP P G SSRNDY+ SGLYS+FT+
Sbjct: 116 SSSKDVENGGREKPPQP---------GAKTSSRNDYIHSGLYSSFTL 153
Score = 50.4 bits (119), Expect = 4e-06
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Frame = +2
Query: 1340 IHFWSTLSPIAPRNPAKLS-----FQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQK 1495
IHFWSTLSP+AP +PA+L FQFPS ++ +DG STP SP QK
Sbjct: 375 IHFWSTLSPVAPLSPARLQGANTLFQFPSVLNSHGPFTLSGLDGPSTPGPFSPDLQK 431
>ref|NP_001039957.1| ETS translocation variant 1 [Bos taurus].
Length = 477
Score = 116 bits (290), Expect = 6e-26
Identities = 53/87 (60%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 334 SLQLWQFLVALLDDPSNSHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 392
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 393 LRYYYEKGIMQKVAGERYVYKFVCDPE 419
>ref|NP_001179763.1| ETS translocation variant 5 [Bos taurus].
Length = 510
Score = 115 bits (287), Expect = 1e-25
Identities = 52/87 (59%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 367 SLQLWQFLVTLLDDPANAHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 425
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV P+
Sbjct: 426 LRYYYEKGIMQKVAGERYVYKFVCDPD 452
>ref|XP_002684888.1| PREDICTED: ets variant 5 [Bos taurus].
Length = 510
Score = 115 bits (287), Expect = 1e-25
Identities = 52/87 (59%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 367 SLQLWQFLVTLLDDPANAHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 425
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV P+
Sbjct: 426 LRYYYEKGIMQKVAGERYVYKFVCDPD 452
>ref|NP_001073683.1| protein C-ets-2 [Bos taurus].
Length = 470
Score = 112 bits (279), Expect = 1e-24
Identities = 53/82 (64%), Positives = 63/82 (76%)
Frame = +2
Query: 182 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 361
+ LWQFLL+LL ++ ISWT DG EFKL D +EVAR WG RKNK MNY+KLSR L
Sbjct: 364 IQLWQFLLELLSDKSCQSFISWTG-DGWEFKLADPDEVARRWGKRKNKPKMNYEKLSRGL 422
Query: 362 RYYYDKNIIRKVSGQKFVYKFV 427
RYYYDKNII K SG+++VY+FV
Sbjct: 423 RYYYDKNIIHKTSGKRYVYRFV 444
>ref|NP_001092576.1| protein C-ets-1 [Bos taurus].
Length = 441
Score = 110 bits (274), Expect = 4e-24
Identities = 52/82 (63%), Positives = 63/82 (76%)
Frame = +2
Query: 182 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 361
+ LWQFLL+LL ++ ISWT DG EFKL D +EVAR WG RKNK MNY+KLSR L
Sbjct: 335 IQLWQFLLELLTDKSCQSFISWTG-DGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGL 393
Query: 362 RYYYDKNIIRKVSGQKFVYKFV 427
RYYYDKNII K +G+++VY+FV
Sbjct: 394 RYYYDKNIIHKTAGKRYVYRFV 415
>ref|NP_001095653.1| transcriptional regulator ERG [Bos taurus].
Length = 455
Score = 109 bits (273), Expect = 6e-24
Identities = 50/81 (61%), Positives = 63/81 (77%)
Frame = +2
Query: 182 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 361
+ LWQFLL+LL + N + I+W +G EFK+ D +EVAR WG RK+K NMNYDKLSRAL
Sbjct: 287 IQLWQFLLELLSDSSNSNCITWEGTNG-EFKMTDPDEVARRWGERKSKPNMNYDKLSRAL 345
Query: 362 RYYYDKNIIRKVSGQKFVYKF 424
RYYYDKNI+ KV G+++ YKF
Sbjct: 346 RYYYDKNIMTKVHGKRYAYKF 366
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,160,507
Number of extensions: 1564656
Number of successful extensions: 9706
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 9530
Number of HSP's successfully gapped: 44
Length of query: 521
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 414
Effective length of database: 14,140,958
Effective search space: 5854356612
Effective search space used: 5854356612
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002231
(1563 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548979.2| PREDICTED: similar to ELK1 protein [Canis famil... 488 e-138
Alignment gi|XP_545691.2| PREDICTED: similar to ETS domain protein Elk-4 ... 169 9e-42
Alignment gi|XP_866248.1| PREDICTED: similar to ELK3 protein isoform 2 [C... 164 2e-40
Alignment gi|XP_539730.2| PREDICTED: similar to ELK3 protein isoform 1 [C... 164 2e-40
Alignment gi|XP_862243.1| PREDICTED: similar to Ets translocation variant... 116 7e-26
Alignment gi|XP_862218.1| PREDICTED: similar to Ets translocation variant... 116 7e-26
Alignment gi|XP_862197.1| PREDICTED: similar to Ets translocation variant... 116 7e-26
Alignment gi|XP_532480.2| PREDICTED: similar to Ets translocation variant... 116 7e-26
Alignment gi|XP_850705.1| PREDICTED: similar to Ets translocation variant... 116 7e-26
Alignment gi|XP_849877.1| PREDICTED: similar to ets variant gene 5 (ets-r... 115 2e-25
>ref|XP_548979.2| PREDICTED: similar to ELK1 protein [Canis familiaris].
Length = 510
Score = 488 bits (1257), Expect(2) = e-138
Identities = 274/443 (61%), Positives = 280/443 (63%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL
Sbjct: 76 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 135
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVA CS EDCP QPE
Sbjct: 136 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVARCSTEDCPPQPEVSITSTVANVAPATVH 195
Query: 530 XXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTIXXXXXXXXXXXXXXXX 709
D ASGK G PKG GMAGPGGLARSSRN+YMRSGLYSTFTI
Sbjct: 196 AVPGDPASGKSGPPKGTGMAGPGGLARSSRNEYMRSGLYSTFTI-QSLQPQPQPPPHPRP 254
Query: 710 XTVLPNATPAGAAVXXXXXXXXXXXXXXXXXXXXXXXXXXQVILTPPEAPNLKSEEPNME 889
+VLPN P+GAAV QVILTPPEA N KSEE N+E
Sbjct: 255 ASVLPNTAPSGAAVPPSGSRSTSPSPLEACLEAEEAGLPLQVILTPPEAQNPKSEELNVE 314
Query: 890 PGLGRXXXXXXXXXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXXXXGVPARLPA 1069
PGLGR FV GVPARLPA
Sbjct: 315 PGLGRPLPPEVKVDGPKEELEAAVGGEAGFV-------QEAAKAGPEVPPAEGVPARLPA 367
Query: 1070 VLMETAAQVGGLAASTTSSTEIAQPQKGRKPRDXXXXXXXXXXXXXXXXRTPGSGTGSGL 1249
V+METAAQVGGLAAST SSTEIAQPQKGRKPRD RTPGSGTGSGL
Sbjct: 368 VVMETAAQVGGLAASTASSTEIAQPQKGRKPRDLELPLSPSLLGGPGPERTPGSGTGSGL 427
Query: 1250 QAPGXXXXXXXXXXXXXXXXXXXXXXXXXXIHFWSTLSPIAPRNPAKLSFQFPSSGSAQV 1429
QAPG IHFWSTLSPIAPR+PAKLSFQFPSSGSAQV
Sbjct: 428 QAPGPALTPSLLPTHTLTPVLLTPSSLPPSIHFWSTLSPIAPRSPAKLSFQFPSSGSAQV 487
Query: 1430 HIPSISVDGLSTPVVLSPGPQKP 1498
HIPSISVDGLSTPVVLSPGPQKP
Sbjct: 488 HIPSISVDGLSTPVVLSPGPQKP 510
Score = 23.1 bits (48), Expect(2) = e-138
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 118 ATHRYPWDGV 147
++ RYPWDGV
Sbjct: 61 SSRRYPWDGV 70
>ref|XP_545691.2| PREDICTED: similar to ETS domain protein Elk-4 (Serum response
factor accessory protein 1) (SAP-1) [Canis familiaris].
Length = 413
Score = 169 bits (427), Expect = 9e-42
Identities = 95/173 (54%), Positives = 109/173 (63%), Gaps = 9/173 (5%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
MD ++TLWQFLLQLL+E N H+ISWTS DG EFKL+ AEEVARLWG+RKNK NMNYDKL
Sbjct: 1 MDSAITLWQFLLQLLQEPQNKHMISWTSNDG-EFKLLQAEEVARLWGIRKNKPNMNYDKL 59
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEV-------AGCSAEDCPAQPEXXXXXXXXX 508
SRALRYYY KNII+KV+GQKFVYKFVSYPE+ G + DC A
Sbjct: 60 SRALRYYYVKNIIKKVNGQKFVYKFVSYPEILKMDPLTVGRAEGDCEA------------ 107
Query: 509 XXXXXXXXXXXDTASGKPGTPKGAGMAGP--GGLARSSRNDYMRSGLYSTFTI 661
G P+ G P G SSRNDY+ SGLYS+FT+
Sbjct: 108 --------LSCGEVGGGARDPESGGREKPPQPGARASSRNDYIHSGLYSSFTL 152
>ref|XP_866248.1| PREDICTED: similar to ELK3 protein isoform 2 [Canis familiaris].
Length = 234
Score = 164 bits (416), Expect = 2e-40
Identities = 89/164 (54%), Positives = 106/164 (64%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
M+ ++TLWQFLLQLL +Q + H+I WTS DG EFKL+ AEEVA+LWGLRKNKTNMNYDKL
Sbjct: 1 MESAITLWQFLLQLLLDQKHEHLICWTSNDG-EFKLLKAEEVAKLWGLRKNKTNMNYDKL 59
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYYDKNII+KV GQKFVYKFVS+PE+ E
Sbjct: 60 SRALRYYYDKNIIKKVIGQKFVYKFVSFPEILKMDPHAVEISRE---------------S 104
Query: 530 XXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTI 661
D+ P + A G L +SRN+Y+ SGLYS+FTI
Sbjct: 105 LLLQDSDCKAPSEGREAPRHGLSALKSTSRNEYIHSGLYSSFTI 148
>ref|XP_539730.2| PREDICTED: similar to ELK3 protein isoform 1 [Canis familiaris].
Length = 402
Score = 164 bits (416), Expect = 2e-40
Identities = 89/164 (54%), Positives = 106/164 (64%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
M+ ++TLWQFLLQLL +Q + H+I WTS DG EFKL+ AEEVA+LWGLRKNKTNMNYDKL
Sbjct: 1 MESAITLWQFLLQLLLDQKHEHLICWTSNDG-EFKLLKAEEVAKLWGLRKNKTNMNYDKL 59
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYYDKNII+KV GQKFVYKFVS+PE+ E
Sbjct: 60 SRALRYYYDKNIIKKVIGQKFVYKFVSFPEILKMDPHAVEISRE---------------S 104
Query: 530 XXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTI 661
D+ P + A G L +SRN+Y+ SGLYS+FTI
Sbjct: 105 LLLQDSDCKAPSEGREAPRHGLSALKSTSRNEYIHSGLYSSFTI 148
Score = 52.8 bits (125), Expect = 9e-07
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Frame = +2
Query: 1340 IHFWSTLSPIAPRNPAKLS-----FQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQK 1495
IHFWS+LSP+AP +PA+L FQFP+ + + +P S+D ++PV+LS QK
Sbjct: 345 IHFWSSLSPVAPLSPARLQGPNTLFQFPTLLNGHMPVPIPSLDRAASPVLLSSNSQK 401
>ref|XP_862243.1| PREDICTED: similar to Ets translocation variant 1 (ER81 protein)
isoform 6 [Canis familiaris].
Length = 473
Score = 116 bits (290), Expect = 7e-26
Identities = 53/87 (60%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 330 SLQLWQFLVALLDDPSNSHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 388
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 389 LRYYYEKGIMQKVAGERYVYKFVCDPE 415
>ref|XP_862218.1| PREDICTED: similar to Ets translocation variant 1 (ER81 protein)
isoform 5 [Canis familiaris].
Length = 454
Score = 116 bits (290), Expect = 7e-26
Identities = 53/87 (60%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 311 SLQLWQFLVALLDDPSNSHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 369
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 370 LRYYYEKGIMQKVAGERYVYKFVCDPE 396
>ref|XP_862197.1| PREDICTED: similar to Ets translocation variant 1 (ER81 protein)
isoform 4 [Canis familiaris].
Length = 473
Score = 116 bits (290), Expect = 7e-26
Identities = 53/87 (60%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 330 SLQLWQFLVALLDDPSNSHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 388
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 389 LRYYYEKGIMQKVAGERYVYKFVCDPE 415
>ref|XP_532480.2| PREDICTED: similar to Ets translocation variant 1 (ER81 protein)
isoform 1 [Canis familiaris].
Length = 473
Score = 116 bits (290), Expect = 7e-26
Identities = 53/87 (60%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 330 SLQLWQFLVALLDDPSNSHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 388
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 389 LRYYYEKGIMQKVAGERYVYKFVCDPE 415
>ref|XP_850705.1| PREDICTED: similar to Ets translocation variant 1 (ER81 protein)
isoform 2 [Canis familiaris].
Length = 473
Score = 116 bits (290), Expect = 7e-26
Identities = 53/87 (60%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 330 SLQLWQFLVALLDDPSNSHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 388
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 389 LRYYYEKGIMQKVAGERYVYKFVCDPE 415
>ref|XP_849877.1| PREDICTED: similar to ets variant gene 5 (ets-related molecule)
isoform 1 [Canis familiaris].
Length = 510
Score = 115 bits (287), Expect = 2e-25
Identities = 52/87 (59%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 367 SLQLWQFLVTLLDDPANAHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 425
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV P+
Sbjct: 426 LRYYYEKGIMQKVAGERYVYKFVCDPD 452
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,941,203
Number of extensions: 1536598
Number of successful extensions: 9500
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 9310
Number of HSP's successfully gapped: 56
Length of query: 521
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 414
Effective length of database: 15,307,552
Effective search space: 6337326528
Effective search space used: 6337326528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002231
(1563 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001107595.1| ETS domain-containing protein Elk-1 [Homo sa... 480 e-135
Alignment gi|NP_005220.2| ETS domain-containing protein Elk-1 [Homo sapie... 480 e-135
Alignment gi|NP_005221.2| ETS domain-containing protein Elk-3 [Homo sapie... 162 1e-39
Alignment gi|NP_068567.1| ETS domain-containing protein Elk-4 isoform b [... 160 3e-39
Alignment gi|NP_001964.2| ETS domain-containing protein Elk-4 isoform a [... 160 3e-39
Alignment gi|NP_001073143.1| ETS translocation variant 4 [Homo sapiens]. 117 4e-26
Alignment gi|NP_001977.1| ETS translocation variant 4 [Homo sapiens]. 117 4e-26
Alignment gi|NP_001156620.1| ETS translocation variant 1 isoform c [Homo ... 116 7e-26
Alignment gi|NP_001156624.1| ETS translocation variant 1 isoform f [Homo ... 116 7e-26
Alignment gi|NP_001156623.1| ETS translocation variant 1 isoform e [Homo ... 116 7e-26
>ref|NP_001107595.1| ETS domain-containing protein Elk-1 [Homo sapiens].
Length = 428
Score = 480 bits (1236), Expect = e-135
Identities = 270/443 (60%), Positives = 278/443 (62%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL
Sbjct: 1 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 60
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCS EDCP QPE
Sbjct: 61 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSTEDCPPQPEVSVTSTMPNVAPAAIH 120
Query: 530 XXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTIXXXXXXXXXXXXXXXX 709
DT SGKPGTPKGAGMAGPGGLARSSRN+YMRSGLYSTFTI
Sbjct: 121 AAPGDTVSGKPGTPKGAGMAGPGGLARSSRNEYMRSGLYSTFTI---QSLQPQPPPHPRP 177
Query: 710 XTVLPNATPAGAAVXXXXXXXXXXXXXXXXXXXXXXXXXXQVILTPPEAPNLKSEEPNME 889
VLP+A PAGAA QVILTPPEAPNLKSEE N+E
Sbjct: 178 AVVLPSAAPAGAAAPPSGSRSTSPSPLEACLEAEEAGLPLQVILTPPEAPNLKSEELNVE 237
Query: 890 PGLGRXXXXXXXXXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXXXXGVPARLPA 1069
PGLGR V GVPARLPA
Sbjct: 238 PGLGRALPPEVKVEGPKEELE---------VAGERGFVPETTKAEPEVPPQEGVPARLPA 288
Query: 1070 VLMETAAQVGGLAASTTSSTEIAQPQKGRKPRDXXXXXXXXXXXXXXXXRTPGSGTGSGL 1249
V+M+TA Q GG AA SS EI+QPQKGRKPRD RTPGSG+GSGL
Sbjct: 289 VVMDTAGQAGGHAA---SSPEISQPQKGRKPRDLELPLSPSLLGGPGPERTPGSGSGSGL 345
Query: 1250 QAPGXXXXXXXXXXXXXXXXXXXXXXXXXXIHFWSTLSPIAPRNPAKLSFQFPSSGSAQV 1429
QAPG IHFWSTLSPIAPR+PAKLSFQFPSSGSAQV
Sbjct: 346 QAPGPALTPSLLPTHTLTPVLLTPSSLPPSIHFWSTLSPIAPRSPAKLSFQFPSSGSAQV 405
Query: 1430 HIPSISVDGLSTPVVLSPGPQKP 1498
HIPSISVDGLSTPVVLSPGPQKP
Sbjct: 406 HIPSISVDGLSTPVVLSPGPQKP 428
>ref|NP_005220.2| ETS domain-containing protein Elk-1 [Homo sapiens].
Length = 428
Score = 480 bits (1236), Expect = e-135
Identities = 270/443 (60%), Positives = 278/443 (62%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL
Sbjct: 1 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 60
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCS EDCP QPE
Sbjct: 61 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSTEDCPPQPEVSVTSTMPNVAPAAIH 120
Query: 530 XXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTIXXXXXXXXXXXXXXXX 709
DT SGKPGTPKGAGMAGPGGLARSSRN+YMRSGLYSTFTI
Sbjct: 121 AAPGDTVSGKPGTPKGAGMAGPGGLARSSRNEYMRSGLYSTFTI---QSLQPQPPPHPRP 177
Query: 710 XTVLPNATPAGAAVXXXXXXXXXXXXXXXXXXXXXXXXXXQVILTPPEAPNLKSEEPNME 889
VLP+A PAGAA QVILTPPEAPNLKSEE N+E
Sbjct: 178 AVVLPSAAPAGAAAPPSGSRSTSPSPLEACLEAEEAGLPLQVILTPPEAPNLKSEELNVE 237
Query: 890 PGLGRXXXXXXXXXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXXXXGVPARLPA 1069
PGLGR V GVPARLPA
Sbjct: 238 PGLGRALPPEVKVEGPKEELE---------VAGERGFVPETTKAEPEVPPQEGVPARLPA 288
Query: 1070 VLMETAAQVGGLAASTTSSTEIAQPQKGRKPRDXXXXXXXXXXXXXXXXRTPGSGTGSGL 1249
V+M+TA Q GG AA SS EI+QPQKGRKPRD RTPGSG+GSGL
Sbjct: 289 VVMDTAGQAGGHAA---SSPEISQPQKGRKPRDLELPLSPSLLGGPGPERTPGSGSGSGL 345
Query: 1250 QAPGXXXXXXXXXXXXXXXXXXXXXXXXXXIHFWSTLSPIAPRNPAKLSFQFPSSGSAQV 1429
QAPG IHFWSTLSPIAPR+PAKLSFQFPSSGSAQV
Sbjct: 346 QAPGPALTPSLLPTHTLTPVLLTPSSLPPSIHFWSTLSPIAPRSPAKLSFQFPSSGSAQV 405
Query: 1430 HIPSISVDGLSTPVVLSPGPQKP 1498
HIPSISVDGLSTPVVLSPGPQKP
Sbjct: 406 HIPSISVDGLSTPVVLSPGPQKP 428
>ref|NP_005221.2| ETS domain-containing protein Elk-3 [Homo sapiens].
Length = 407
Score = 162 bits (409), Expect = 1e-39
Identities = 90/166 (54%), Positives = 107/166 (64%), Gaps = 2/166 (1%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
M+ ++TLWQFLLQLL +Q + H+I WTS DG EFKL+ AEEVA+LWGLRKNKTNMNYDKL
Sbjct: 1 MESAITLWQFLLQLLLDQKHEHLICWTSNDG-EFKLLKAEEVAKLWGLRKNKTNMNYDKL 59
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYYDKNII+KV GQKFVYKFVS+PE+ E
Sbjct: 60 SRALRYYYDKNIIKKVIGQKFVYKFVSFPEILKMDPHAVEISRESLLLQD---------- 109
Query: 530 XXXXDTASGKPGTPKG--AGMAGPGGLARSSRNDYMRSGLYSTFTI 661
S +P+G A G L +SRN+Y+ SGLYS+FTI
Sbjct: 110 -------SDCKASPEGREAHKHGLAALRSTSRNEYIHSGLYSSFTI 148
Score = 52.8 bits (125), Expect = 9e-07
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Frame = +2
Query: 1340 IHFWSTLSPIAPRNPAKLS-----FQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQK 1495
IHFWS+LSP+AP +PA+L FQFP+ + + +P S+D ++PV+LS QK
Sbjct: 350 IHFWSSLSPVAPLSPARLQGPSTLFQFPTLLNGHMPVPIPSLDRAASPVLLSSNSQK 406
>ref|NP_068567.1| ETS domain-containing protein Elk-4 isoform b [Homo sapiens].
Length = 405
Score = 160 bits (405), Expect = 3e-39
Identities = 90/171 (52%), Positives = 107/171 (62%), Gaps = 7/171 (4%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
MD ++TLWQFLLQLL++ N H+I WTS DG +FKL+ AEEVARLWG+RKNK NMNYDKL
Sbjct: 1 MDSAITLWQFLLQLLQKPQNKHMICWTSNDG-QFKLLQAEEVARLWGIRKNKPNMNYDKL 59
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEV-------AGCSAEDCPAQPEXXXXXXXXX 508
SRALRYYY KNII+KV+GQKFVYKFVSYPE+ G DC +
Sbjct: 60 SRALRYYYVKNIIKKVNGQKFVYKFVSYPEILNMDPMTVGRIEGDCES------------ 107
Query: 509 XXXXXXXXXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTI 661
++S K G G SSRNDY+ SGLYS+FT+
Sbjct: 108 ------LNFSEVSSSSKDVENGGKDKPPQPGAKTSSRNDYIHSGLYSSFTL 152
>ref|NP_001964.2| ETS domain-containing protein Elk-4 isoform a [Homo sapiens].
Length = 431
Score = 160 bits (405), Expect = 3e-39
Identities = 90/171 (52%), Positives = 107/171 (62%), Gaps = 7/171 (4%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
MD ++TLWQFLLQLL++ N H+I WTS DG +FKL+ AEEVARLWG+RKNK NMNYDKL
Sbjct: 1 MDSAITLWQFLLQLLQKPQNKHMICWTSNDG-QFKLLQAEEVARLWGIRKNKPNMNYDKL 59
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEV-------AGCSAEDCPAQPEXXXXXXXXX 508
SRALRYYY KNII+KV+GQKFVYKFVSYPE+ G DC +
Sbjct: 60 SRALRYYYVKNIIKKVNGQKFVYKFVSYPEILNMDPMTVGRIEGDCES------------ 107
Query: 509 XXXXXXXXXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTI 661
++S K G G SSRNDY+ SGLYS+FT+
Sbjct: 108 ------LNFSEVSSSSKDVENGGKDKPPQPGAKTSSRNDYIHSGLYSSFTL 152
Score = 50.4 bits (119), Expect = 4e-06
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Frame = +2
Query: 1340 IHFWSTLSPIAPRNPAKLS-----FQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQK 1495
IHFWSTLSP+AP +PA+L FQFPS ++ +DG STP SP QK
Sbjct: 374 IHFWSTLSPVAPLSPARLQGANTLFQFPSVLNSHGPFTLSGLDGPSTPGPFSPDLQK 430
>ref|NP_001073143.1| ETS translocation variant 4 [Homo sapiens].
Length = 484
Score = 117 bits (292), Expect = 4e-26
Identities = 53/87 (60%), Positives = 71/87 (81%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
++ LWQFL+ LL + N H I+WT R G EFKL++ EEVARLWG++KN+ MNYDKLSR+
Sbjct: 340 ALQLWQFLVALLDDPTNAHFIAWTGR-GMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRS 398
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 399 LRYYYEKGIMQKVAGERYVYKFVCEPE 425
>ref|NP_001977.1| ETS translocation variant 4 [Homo sapiens].
Length = 484
Score = 117 bits (292), Expect = 4e-26
Identities = 53/87 (60%), Positives = 71/87 (81%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
++ LWQFL+ LL + N H I+WT R G EFKL++ EEVARLWG++KN+ MNYDKLSR+
Sbjct: 340 ALQLWQFLVALLDDPTNAHFIAWTGR-GMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRS 398
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 399 LRYYYEKGIMQKVAGERYVYKFVCEPE 425
>ref|NP_001156620.1| ETS translocation variant 1 isoform c [Homo sapiens].
Length = 459
Score = 116 bits (290), Expect = 7e-26
Identities = 53/87 (60%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 316 SLQLWQFLVALLDDPSNSHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 374
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 375 LRYYYEKGIMQKVAGERYVYKFVCDPE 401
>ref|NP_001156624.1| ETS translocation variant 1 isoform f [Homo sapiens].
Length = 374
Score = 116 bits (290), Expect = 7e-26
Identities = 53/87 (60%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 231 SLQLWQFLVALLDDPSNSHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 289
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 290 LRYYYEKGIMQKVAGERYVYKFVCDPE 316
>ref|NP_001156623.1| ETS translocation variant 1 isoform e [Homo sapiens].
Length = 419
Score = 116 bits (290), Expect = 7e-26
Identities = 53/87 (60%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 276 SLQLWQFLVALLDDPSNSHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 334
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 335 LRYYYEKGIMQKVAGERYVYKFVCDPE 361
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,551,613
Number of extensions: 1483294
Number of successful extensions: 9136
Number of sequences better than 1.0e-05: 65
Number of HSP's gapped: 8982
Number of HSP's successfully gapped: 71
Length of query: 521
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 414
Effective length of database: 14,770,016
Effective search space: 6114786624
Effective search space used: 6114786624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002231
(1563 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031948.4| ETS domain-containing protein Elk-1 [Mus muscul... 451 e-127
Alignment gi|NP_031949.2| ETS domain-containing protein Elk-4 [Mus muscul... 165 1e-40
Alignment gi|NP_038536.2| ETS domain-containing protein Elk-3 isoform a [... 156 4e-38
Alignment gi|NP_032841.2| ETS translocation variant 4 [Mus musculus]. 117 3e-26
Alignment gi|XP_484312.1| PREDICTED: ETS translocation variant 1-like [Mu... 116 6e-26
Alignment gi|NP_031986.1| ETS translocation variant 1 isoform a [Mus musc... 116 6e-26
Alignment gi|NP_001156626.1| ETS translocation variant 1 isoform b [Mus m... 116 6e-26
Alignment gi|NP_076283.2| ETS translocation variant 5 [Mus musculus]. 115 1e-25
Alignment gi|NP_035939.3| protein C-ets-2 [Mus musculus]. 112 1e-24
Alignment gi|NP_001033731.1| protein C-ets-1 isoform 2 [Mus musculus]. 110 4e-24
>ref|NP_031948.4| ETS domain-containing protein Elk-1 [Mus musculus].
Length = 429
Score = 451 bits (1161), Expect = e-127
Identities = 257/443 (58%), Positives = 268/443 (60%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL
Sbjct: 1 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 60
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCS EDCP QPE
Sbjct: 61 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSTEDCPPQPE-VSVTSAIAMAPATVH 119
Query: 530 XXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTIXXXXXXXXXXXXXXXX 709
DTA+GKPGTPKGAGM G GGLARSSRN+YMRSGLYSTFTI
Sbjct: 120 AGPGDTATGKPGTPKGAGMTGQGGLARSSRNEYMRSGLYSTFTI-QSLQPQPQPPIPPRP 178
Query: 710 XTVLPNATPAGAAVXXXXXXXXXXXXXXXXXXXXXXXXXXQVILTPPEAPNLKSEEPNME 889
+VLPN TPAG QVILTPPEAPN KSEE +++
Sbjct: 179 ASVLPNTTPAGVPAPASGSRSTSPNPLEACLEAEEAGLPLQVILTPPEAPNQKSEELSLD 238
Query: 890 PGLGRXXXXXXXXXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXXXXGVPARLPA 1069
P G G+ ARLPA
Sbjct: 239 PSFGHPQPPEVKVEGPKEELE---------AARAGGFSSEAVKAEPEVSASEGLLARLPA 289
Query: 1070 VLMETAAQVGGLAASTTSSTEIAQPQKGRKPRDXXXXXXXXXXXXXXXXRTPGSGTGSGL 1249
+L E AQV GL +TS+TEI QPQKGRKPRD RTPGSGT SGL
Sbjct: 290 ILTENTAQVCGL---STSTTEITQPQKGRKPRDLELPLSPSLLGGQGPERTPGSGTSSGL 346
Query: 1250 QAPGXXXXXXXXXXXXXXXXXXXXXXXXXXIHFWSTLSPIAPRNPAKLSFQFPSSGSAQV 1429
QAPG IHFWSTLSPIAPR+PAKLSFQFPSSGSAQV
Sbjct: 347 QAPGPALTPSLLPTHTLTPVLLTPSSLPPSIHFWSTLSPIAPRSPAKLSFQFPSSGSAQV 406
Query: 1430 HIPSISVDGLSTPVVLSPGPQKP 1498
HIPSISVDGLSTPVVLSPGPQKP
Sbjct: 407 HIPSISVDGLSTPVVLSPGPQKP 429
>ref|NP_031949.2| ETS domain-containing protein Elk-4 [Mus musculus].
Length = 430
Score = 165 bits (417), Expect = 1e-40
Identities = 93/171 (54%), Positives = 108/171 (63%), Gaps = 7/171 (4%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
MD ++TLWQFLLQLL+E N H+I WTS +G EFKL+ AEEVARLWG+RKNK NMNYDKL
Sbjct: 1 MDSAITLWQFLLQLLQEPQNEHMICWTSNNG-EFKLLQAEEVARLWGIRKNKPNMNYDKL 59
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEV-------AGCSAEDCPAQPEXXXXXXXXX 508
SRALRYYY KNII+KV+GQKFVYKFVSYPE+ G DC A
Sbjct: 60 SRALRYYYVKNIIKKVNGQKFVYKFVSYPEILKMDPLTVGRIEGDCEA------------ 107
Query: 509 XXXXXXXXXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTI 661
+T+S K G G SSRNDY+ SGLYS+FT+
Sbjct: 108 -------LNSIETSSSKDVEYGGKERPPQPGAKTSSRNDYIHSGLYSSFTL 151
Score = 49.3 bits (116), Expect = 8e-06
Identities = 28/57 (49%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +2
Query: 1340 IHFWSTLSPIAPRNPAKLS-----FQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQK 1495
IHFWSTLSP AP +PA+L FQFPS ++ +DG STP SP QK
Sbjct: 373 IHFWSTLSPFAPLSPARLQGANTLFQFPSVLNSHGPFTLSGLDGPSTPGPFSPDLQK 429
>ref|NP_038536.2| ETS domain-containing protein Elk-3 isoform a [Mus musculus].
Length = 409
Score = 156 bits (395), Expect = 4e-38
Identities = 86/166 (51%), Positives = 105/166 (63%), Gaps = 2/166 (1%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
M+ ++TLWQFLL LL +Q + H+I WTS DG EFKL+ AEEVA+LWGLRKNKTNMNYDKL
Sbjct: 1 MESAITLWQFLLHLLLDQKHEHLICWTSNDG-EFKLLKAEEVAKLWGLRKNKTNMNYDKL 59
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYYDKNII+KV GQKFVYKFVS+P++ E
Sbjct: 60 SRALRYYYDKNIIKKVIGQKFVYKFVSFPDILKMDPHAVEISRESLLLQDGDCKV----- 114
Query: 530 XXXXDTASGKPGTPKGAGM--AGPGGLARSSRNDYMRSGLYSTFTI 661
+P+G + G L +SRN+Y+ SGLYS+FTI
Sbjct: 115 ------------SPEGREVHRHGLSSLKSASRNEYLHSGLYSSFTI 148
Score = 55.1 bits (131), Expect = 2e-07
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Frame = +2
Query: 1340 IHFWSTLSPIAPRNPAKLS-----FQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQK 1495
IHFWS+LSP+AP +PA+L FQFP+ + + +P S+D +PV+LSP QK
Sbjct: 352 IHFWSSLSPVAPLSPARLQGPNTLFQFPTLLNGHMPVPLPSLDRAPSPVLLSPSSQK 408
>ref|NP_032841.2| ETS translocation variant 4 [Mus musculus].
Length = 485
Score = 117 bits (292), Expect = 3e-26
Identities = 53/87 (60%), Positives = 71/87 (81%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
++ LWQFL+ LL + N H I+WT R G EFKL++ EEVARLWG++KN+ MNYDKLSR+
Sbjct: 341 ALQLWQFLVALLDDPTNAHFIAWTGR-GMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRS 399
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 400 LRYYYEKGIMQKVAGERYVYKFVCEPE 426
>ref|XP_484312.1| PREDICTED: ETS translocation variant 1-like [Mus musculus].
Length = 484
Score = 116 bits (290), Expect = 6e-26
Identities = 53/87 (60%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 341 SLQLWQFLVALLDDPSNSHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 399
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 400 LRYYYEKGIMQKVAGERYVYKFVCDPE 426
>ref|NP_031986.1| ETS translocation variant 1 isoform a [Mus musculus].
Length = 477
Score = 116 bits (290), Expect = 6e-26
Identities = 53/87 (60%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 334 SLQLWQFLVALLDDPSNSHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 392
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 393 LRYYYEKGIMQKVAGERYVYKFVCDPE 419
>ref|NP_001156626.1| ETS translocation variant 1 isoform b [Mus musculus].
Length = 437
Score = 116 bits (290), Expect = 6e-26
Identities = 53/87 (60%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 294 SLQLWQFLVALLDDPSNSHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 352
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 353 LRYYYEKGIMQKVAGERYVYKFVCDPE 379
>ref|NP_076283.2| ETS translocation variant 5 [Mus musculus].
Length = 510
Score = 115 bits (287), Expect = 1e-25
Identities = 52/87 (59%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 367 SLQLWQFLVTLLDDPANAHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 425
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV P+
Sbjct: 426 LRYYYEKGIMQKVAGERYVYKFVCDPD 452
>ref|NP_035939.3| protein C-ets-2 [Mus musculus].
Length = 468
Score = 112 bits (279), Expect = 1e-24
Identities = 53/82 (64%), Positives = 63/82 (76%)
Frame = +2
Query: 182 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 361
+ LWQFLL+LL ++ ISWT DG EFKL D +EVAR WG RKNK MNY+KLSR L
Sbjct: 362 IQLWQFLLELLSDKSCQSFISWTG-DGWEFKLADPDEVARRWGKRKNKPKMNYEKLSRGL 420
Query: 362 RYYYDKNIIRKVSGQKFVYKFV 427
RYYYDKNII K SG+++VY+FV
Sbjct: 421 RYYYDKNIIHKTSGKRYVYRFV 442
>ref|NP_001033731.1| protein C-ets-1 isoform 2 [Mus musculus].
Length = 353
Score = 110 bits (274), Expect = 4e-24
Identities = 52/82 (63%), Positives = 63/82 (76%)
Frame = +2
Query: 182 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 361
+ LWQFLL+LL ++ ISWT DG EFKL D +EVAR WG RKNK MNY+KLSR L
Sbjct: 248 IQLWQFLLELLTDKSCQSFISWTG-DGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGL 306
Query: 362 RYYYDKNIIRKVSGQKFVYKFV 427
RYYYDKNII K +G+++VY+FV
Sbjct: 307 RYYYDKNIIHKTAGKRYVYRFV 328
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,501,018
Number of extensions: 1216801
Number of successful extensions: 7326
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 7203
Number of HSP's successfully gapped: 39
Length of query: 521
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 415
Effective length of database: 12,433,743
Effective search space: 5160003345
Effective search space used: 5160003345
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002231
(1563 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135100.1| PREDICTED: ETS domain-containing protein Elk... 536 e-153
Alignment gi|XP_003135099.1| PREDICTED: ETS domain-containing protein Elk... 536 e-153
Alignment gi|XP_003355727.1| PREDICTED: ETS domain-containing protein Elk... 163 3e-40
Alignment gi|XP_003357444.1| PREDICTED: ETS domain-containing protein Elk... 162 4e-40
Alignment gi|XP_003131425.2| PREDICTED: ETS translocation variant 4 isofo... 117 2e-26
Alignment gi|XP_003358071.1| PREDICTED: ETS translocation variant 4 isofo... 117 2e-26
Alignment gi|NP_001229954.1| ets variant 5 [Sus scrofa]. 115 9e-26
Alignment gi|XP_001928504.2| PREDICTED: protein C-ets-2 [Sus scrofa]. 112 7e-25
Alignment gi|NP_001156358.1| protein C-ets-1 [Sus scrofa]. 109 5e-24
Alignment gi|XP_003359008.1| PREDICTED: transcriptional regulator ERG-lik... 108 6e-24
>ref|XP_003135100.1| PREDICTED: ETS domain-containing protein Elk-1 isoform 2 [Sus
scrofa].
Length = 443
Score = 536 bits (1382), Expect = e-153
Identities = 293/443 (66%), Positives = 294/443 (66%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL
Sbjct: 1 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 60
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPE
Sbjct: 61 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEVAVTSAVASAGPAAVH 120
Query: 530 XXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTIXXXXXXXXXXXXXXXX 709
DTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTI
Sbjct: 121 AVPGDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTIQSLQPQPQPPASHPRP 180
Query: 710 XTVLPNATPAGAAVXXXXXXXXXXXXXXXXXXXXXXXXXXQVILTPPEAPNLKSEEPNME 889
TVLPNATPAGAAV QVILTPPEAPNLKSEEPNME
Sbjct: 181 STVLPNATPAGAAVPPSGSRSTSPSPLEACLEAEEASLPLQVILTPPEAPNLKSEEPNME 240
Query: 890 PGLGRXXXXXXXXXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXXXXGVPARLPA 1069
PGLGR FVL GVPARLPA
Sbjct: 241 PGLGRPLPPEVKVEEPKEELEAAASGEAGFVLEAVKAEPFEPKAEPEIPPAEGVPARLPA 300
Query: 1070 VLMETAAQVGGLAASTTSSTEIAQPQKGRKPRDXXXXXXXXXXXXXXXXRTPGSGTGSGL 1249
VLMETAAQVGGLAASTTSSTEIAQPQKGRKPRD RTPGSGTGSGL
Sbjct: 301 VLMETAAQVGGLAASTTSSTEIAQPQKGRKPRDLELPLSPSLLGGPGSERTPGSGTGSGL 360
Query: 1250 QAPGXXXXXXXXXXXXXXXXXXXXXXXXXXIHFWSTLSPIAPRNPAKLSFQFPSSGSAQV 1429
QAPG IHFWSTLSPIAPR+PAKLSFQFPSSGSAQV
Sbjct: 361 QAPGPALTPSLLPTHTLTPVLLTPSSLPPSIHFWSTLSPIAPRSPAKLSFQFPSSGSAQV 420
Query: 1430 HIPSISVDGLSTPVVLSPGPQKP 1498
HIPSISVDGLSTPVVLSPGPQKP
Sbjct: 421 HIPSISVDGLSTPVVLSPGPQKP 443
>ref|XP_003135099.1| PREDICTED: ETS domain-containing protein Elk-1 isoform 1 [Sus
scrofa].
Length = 443
Score = 536 bits (1382), Expect = e-153
Identities = 293/443 (66%), Positives = 294/443 (66%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL
Sbjct: 1 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 60
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPE
Sbjct: 61 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEVAVTSAVASAGPAAVH 120
Query: 530 XXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTIXXXXXXXXXXXXXXXX 709
DTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTI
Sbjct: 121 AVPGDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTIQSLQPQPQPPASHPRP 180
Query: 710 XTVLPNATPAGAAVXXXXXXXXXXXXXXXXXXXXXXXXXXQVILTPPEAPNLKSEEPNME 889
TVLPNATPAGAAV QVILTPPEAPNLKSEEPNME
Sbjct: 181 STVLPNATPAGAAVPPSGSRSTSPSPLEACLEAEEASLPLQVILTPPEAPNLKSEEPNME 240
Query: 890 PGLGRXXXXXXXXXXXXXXXXXXXXXXXXFVLXXXXXXXXXXXXXXXXXXXXGVPARLPA 1069
PGLGR FVL GVPARLPA
Sbjct: 241 PGLGRPLPPEVKVEEPKEELEAAASGEAGFVLEAVKAEPFEPKAEPEIPPAEGVPARLPA 300
Query: 1070 VLMETAAQVGGLAASTTSSTEIAQPQKGRKPRDXXXXXXXXXXXXXXXXRTPGSGTGSGL 1249
VLMETAAQVGGLAASTTSSTEIAQPQKGRKPRD RTPGSGTGSGL
Sbjct: 301 VLMETAAQVGGLAASTTSSTEIAQPQKGRKPRDLELPLSPSLLGGPGSERTPGSGTGSGL 360
Query: 1250 QAPGXXXXXXXXXXXXXXXXXXXXXXXXXXIHFWSTLSPIAPRNPAKLSFQFPSSGSAQV 1429
QAPG IHFWSTLSPIAPR+PAKLSFQFPSSGSAQV
Sbjct: 361 QAPGPALTPSLLPTHTLTPVLLTPSSLPPSIHFWSTLSPIAPRSPAKLSFQFPSSGSAQV 420
Query: 1430 HIPSISVDGLSTPVVLSPGPQKP 1498
HIPSISVDGLSTPVVLSPGPQKP
Sbjct: 421 HIPSISVDGLSTPVVLSPGPQKP 443
>ref|XP_003355727.1| PREDICTED: ETS domain-containing protein Elk-3 [Sus scrofa].
Length = 401
Score = 163 bits (412), Expect = 3e-40
Identities = 88/164 (53%), Positives = 105/164 (64%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
M+ ++TLWQFLLQLL +Q + H+I WTS DG EFKL+ AEEVA+LWGLRKNKTNMNYDKL
Sbjct: 1 MESAITLWQFLLQLLLDQKHEHLICWTSNDG-EFKLLKAEEVAKLWGLRKNKTNMNYDKL 59
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEVAGCSAEDCPAQPEXXXXXXXXXXXXXXXX 529
SRALRYYYDKNII+KV GQKFVYKFVS+PE+ E
Sbjct: 60 SRALRYYYDKNIIKKVIGQKFVYKFVSFPEILKMDPHAVEISRE---------------S 104
Query: 530 XXXXDTASGKPGTPKGAGMAGPGGLARSSRNDYMRSGLYSTFTI 661
D+ P + A G L + RN+Y+ SGLYS+FTI
Sbjct: 105 LLLQDSECKAPPEGREAHRHGLSALKSAGRNEYLHSGLYSSFTI 148
Score = 52.8 bits (125), Expect = 5e-07
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Frame = +2
Query: 1340 IHFWSTLSPIAPRNPAKLS-----FQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQK 1495
IHFWS+LSP+AP +PA+L FQFP+ + + +P S+D ++PV+LS QK
Sbjct: 344 IHFWSSLSPVAPLSPARLQGPNTLFQFPTLLNGHMPVPIPSLDRAASPVLLSSNSQK 400
>ref|XP_003357444.1| PREDICTED: ETS domain-containing protein Elk-4 [Sus scrofa].
Length = 432
Score = 162 bits (411), Expect = 4e-40
Identities = 92/173 (53%), Positives = 108/173 (62%), Gaps = 9/173 (5%)
Frame = +2
Query: 170 MDPSVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKL 349
MD ++TLWQFLLQLL+E N H+I WTS +G EFKL+ AEEVARLWG+RKNK NMNYDKL
Sbjct: 1 MDSAITLWQFLLQLLKEPQNDHMICWTSNNG-EFKLLQAEEVARLWGIRKNKPNMNYDKL 59
Query: 350 SRALRYYYDKNIIRKVSGQKFVYKFVSYPEV-------AGCSAEDCPAQPEXXXXXXXXX 508
SRALRYYY KNII+KV+GQKFVYKFVSYPE+ G DC A
Sbjct: 60 SRALRYYYVKNIIKKVNGQKFVYKFVSYPEILSMDPMTVGRVEGDCEA------------ 107
Query: 509 XXXXXXXXXXXDTASGKPGTPKGAGMAGP--GGLARSSRNDYMRSGLYSTFTI 661
+ +S + G P G SSRNDY+ SGLYS+FT+
Sbjct: 108 -------LGIAELSSNSSRDVENGGKEKPLQPGAKTSSRNDYIHSGLYSSFTL 153
Score = 50.4 bits (119), Expect = 3e-06
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Frame = +2
Query: 1340 IHFWSTLSPIAPRNPAKLS-----FQFPSSGSAQVHIPSISVDGLSTPVVLSPGPQK 1495
IHFWSTLSP+AP +PA+L FQFPS ++ +DG STP SP QK
Sbjct: 375 IHFWSTLSPVAPLSPARLQGANTLFQFPSVLNSHGPFTLSGLDGPSTPGPFSPDLQK 431
>ref|XP_003131425.2| PREDICTED: ETS translocation variant 4 isoform 1 [Sus scrofa].
Length = 453
Score = 117 bits (292), Expect = 2e-26
Identities = 53/87 (60%), Positives = 71/87 (81%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
++ LWQFL+ LL + N H I+WT R G EFKL++ EEVARLWG++KN+ MNYDKLSR+
Sbjct: 309 ALQLWQFLVALLDDPTNAHFIAWTGR-GMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRS 367
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 368 LRYYYEKGIMQKVAGERYVYKFVCEPE 394
>ref|XP_003358071.1| PREDICTED: ETS translocation variant 4 isoform 2 [Sus scrofa].
Length = 485
Score = 117 bits (292), Expect = 2e-26
Identities = 53/87 (60%), Positives = 71/87 (81%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
++ LWQFL+ LL + N H I+WT R G EFKL++ EEVARLWG++KN+ MNYDKLSR+
Sbjct: 341 ALQLWQFLVALLDDPTNAHFIAWTGR-GMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRS 399
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV PE
Sbjct: 400 LRYYYEKGIMQKVAGERYVYKFVCEPE 426
>ref|NP_001229954.1| ets variant 5 [Sus scrofa].
Length = 510
Score = 115 bits (287), Expect = 9e-26
Identities = 52/87 (59%), Positives = 70/87 (80%)
Frame = +2
Query: 179 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 358
S+ LWQFL+ LL + N H I+WT R G EFKL++ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 367 SLQLWQFLVTLLDDPANAHFIAWTGR-GMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 425
Query: 359 LRYYYDKNIIRKVSGQKFVYKFVSYPE 439
LRYYY+K I++KV+G+++VYKFV P+
Sbjct: 426 LRYYYEKGIMQKVAGERYVYKFVCDPD 452
>ref|XP_001928504.2| PREDICTED: protein C-ets-2 [Sus scrofa].
Length = 486
Score = 112 bits (279), Expect = 7e-25
Identities = 53/82 (64%), Positives = 63/82 (76%)
Frame = +2
Query: 182 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 361
+ LWQFLL+LL ++ ISWT DG EFKL D +EVAR WG RKNK MNY+KLSR L
Sbjct: 380 IQLWQFLLELLSDKSCQSFISWTG-DGWEFKLADPDEVARRWGKRKNKPKMNYEKLSRGL 438
Query: 362 RYYYDKNIIRKVSGQKFVYKFV 427
RYYYDKNII K SG+++VY+FV
Sbjct: 439 RYYYDKNIIHKTSGKRYVYRFV 460
>ref|NP_001156358.1| protein C-ets-1 [Sus scrofa].
Length = 485
Score = 109 bits (272), Expect = 5e-24
Identities = 52/80 (65%), Positives = 62/80 (77%)
Frame = +2
Query: 188 LWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRY 367
LWQFLL+LL ++ ISWT DG EFKL D +EVAR WG RKNK MNY+KLSR LRY
Sbjct: 381 LWQFLLELLTDKSCQSFISWTG-DGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRY 439
Query: 368 YYDKNIIRKVSGQKFVYKFV 427
YYDKNII K +G+++VY+FV
Sbjct: 440 YYDKNIIHKTAGKRYVYRFV 459
>ref|XP_003359008.1| PREDICTED: transcriptional regulator ERG-like [Sus scrofa].
Length = 575
Score = 108 bits (271), Expect = 6e-24
Identities = 50/81 (61%), Positives = 62/81 (76%)
Frame = +2
Query: 182 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 361
+ LWQFLL+LL + N I+W +G EFK+ D +EVAR WG RK+K NMNYDKLSRAL
Sbjct: 407 IQLWQFLLELLSDSSNSSCITWEGTNG-EFKMTDPDEVARRWGERKSKPNMNYDKLSRAL 465
Query: 362 RYYYDKNIIRKVSGQKFVYKF 424
RYYYDKNI+ KV G+++ YKF
Sbjct: 466 RYYYDKNIMTKVHGKRYAYKF 486
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,488,294
Number of extensions: 1132138
Number of successful extensions: 6087
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 5998
Number of HSP's successfully gapped: 29
Length of query: 521
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 418
Effective length of database: 8,779,541
Effective search space: 3669848138
Effective search space used: 3669848138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002231
(1563 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 918 0.0
Sscrofa_Chr13 66 6e-08
>Sscrofa_ChrX
|| Length = 144288218
Score = 918 bits (463), Expect = 0.0
Identities = 469/471 (99%)
Strand = Plus / Plus
Query: 830 caggtcatcctgaccccgcctgaggccccaaaccttaaatccgaagagccaaatatggag 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47318041 caggtcatcctgaccccgcctgaggccccaaaccttaaatccgaagagccaaatatggag 47318100
Query: 890 cctgggttgggccggccactgcccccggaagtgaaagtggaagagcccaaggaagagtta 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47318101 cctgggttgggccggccactgcccccggaagtgaaagtggaagagcccaaggaagagtta 47318160
Query: 950 gaagctgcagccagtggggaggcaggatttgtgctggaagccgccaaggccgagcccttt 1009
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 47318161 gaagctgcagccagtggggaggcaggatttgtgctggaagccgtcaaggccgagcccttt 47318220
Query: 1010 gagcccaaggcagagccagaaatcccgcccgcagagggcgtgccagcccggctgcctgcg 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47318221 gagcccaaggcagagccagaaatcccgcccgcagagggcgtgccagcccggctgcctgcg 47318280
Query: 1070 gtccttatggaaaccgcagcgcaggtgggcggccttgcggcttccaccacttccagcaca 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47318281 gtccttatggaaaccgcagcgcaggtgggcggccttgcggcttccaccacttccagcaca 47318340
Query: 1130 gagatcgcccagcctcagaagggccggaagccccgggacctggagcttccactcagcccg 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47318341 gagatcgcccagcctcagaagggccggaagccccgggacctggagcttccactcagcccg 47318400
Query: 1190 agcctgctgggtgggccgggacccgaacggactccaggatcgggaaccggctccgggctg 1249
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 47318401 agcctgctgggtgggccgggatccgaacggactccaggatcgggaaccggctccgggctg 47318460
Query: 1250 caggcgccaggcccggcgctgacgccgtccctgctacctacgcacacattg 1300
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47318461 caggcgccaggcccggcgctgacgccgtccctgctacctacgcacacattg 47318511
Score = 898 bits (453), Expect = 0.0
Identities = 456/457 (99%)
Strand = Plus / Plus
Query: 378 agaacatcatccgcaaagtgagcggccagaagtttgtctacaagtttgtgtcctaccccg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47316487 agaacatcatccgcaaagtgagcggccagaagtttgtctacaagtttgtgtcctaccccg 47316546
Query: 438 aggtcgcagggtgctccgcggaggactgcccagcccagcccgaggtggctgtcacctccg 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47316547 aggtcgcagggtgctccgcggaggactgcccagcccagcccgaggtggctgtcacctccg 47316606
Query: 498 cggtggcaagtgcaggccccgctgctgtccacgccgttcccggggacactgcctccggaa 557
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 47316607 cggtggcaagtgcaggccccgccgctgtccacgccgttcccggggacactgcctccggaa 47316666
Query: 558 agccaggcacacccaagggtgccggaatggcaggcccgggcggcttggcacgcagcagcc 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47316667 agccaggcacacccaagggtgccggaatggcaggcccgggcggcttggcacgcagcagcc 47316726
Query: 618 ggaacgactacatgcgctcaggcctctactccaccttcaccatccagtccctacagccgc 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47316727 ggaacgactacatgcgctcaggcctctactccaccttcaccatccagtccctacagccgc 47316786
Query: 678 agccacagccgccagcctctcacccgcggccttccaccgtgctccccaacgccaccccag 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47316787 agccacagccgccagcctctcacccgcggccttccaccgtgctccccaacgccaccccag 47316846
Query: 738 cgggagcagcagtgcccccctcagggagtaggagcaccagtccaagccccttggaggcct 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47316847 cgggagcagcagtgcccccctcagggagtaggagcaccagtccaagccccttggaggcct 47316906
Query: 798 gtctggaggctgaggaggccagcctgcctctgcaggt 834
|||||||||||||||||||||||||||||||||||||
Sbjct: 47316907 gtctggaggctgaggaggccagcctgcctctgcaggt 47316943
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 170 atggacccttctgtgacgctgtggcagtttctgctgcagctgctgagagagcaaggcaac 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47312106 atggacccttctgtgacgctgtggcagtttctgctgcagctgctgagagagcaaggcaac 47312165
Query: 230 ggccacatcatctcctggacctcacgggatggcggtgagttcaagctggtggatgccgag 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47312166 ggccacatcatctcctggacctcacgggatggcggtgagttcaagctggtggatgccgag 47312225
Query: 290 gaggtggcccggctgtgggggctgcgcaagaataagaccaacatgaattatgacaagctc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47312226 gaggtggcccggctgtgggggctgcgcaagaataagaccaacatgaattatgacaagctc 47312285
Query: 350 agccgggccttgcggtactactatgacaag 379
||||||||||||||||||||||||||||||
Sbjct: 47312286 agccgggccttgcggtactactatgacaag 47312315
Score = 208 bits (105), Expect = 7e-51
Identities = 108/109 (99%)
Strand = Plus / Plus
Query: 1399 ccagtttccgtccagtggcagcgcccaggtgcacatcccttccatcagcgtggatggcct 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47319368 ccagtttccgtccagtggcagcgcccaggtgcacatcccttccatcagcgtggatggcct 47319427
Query: 1459 ctcaacccccgtggtgctctccccagggccccagaagccatgattgtca 1507
||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 47319428 ctcaacccccgtggtgctctccccagggccccagaagccatgactgtca 47319476
Score = 196 bits (99), Expect = 3e-47
Identities = 102/103 (99%)
Strand = Plus / Plus
Query: 1300 gaccccggtgctgctgacgcccagctcgctgccccccagcattcacttctggagcaccct 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47319174 gaccccggtgctgctgacgcccagctcgctgccccccagcattcacttctggagcaccct 47319233
Query: 1360 gagtcccattgcaccccgtaacccggccaagctctccttccag 1402
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 47319234 gagtcccattgcaccccgtagcccggccaagctctccttccag 47319276
Score = 77.8 bits (39), Expect = 2e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 92 cccggagctgccaacaccaccgcagcgctacgcacaggt 130
|||||||||||||||||||||||||||||||||||||||
Sbjct: 47304078 cccggagctgccaacaccaccgcagcgctacgcacaggt 47304116
Score = 73.8 bits (37), Expect = 3e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 cgtgagcggtggggaaacgcaggggcggcttctaggt 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 47303931 cgtgagcggtggggaaacgcaggggcggcttctaggt 47303967
>Sscrofa_Chr13
|| Length = 218635234
Score = 65.9 bits (33), Expect = 6e-08
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 327 ccaacatgaattatgacaagctcagccgggccttgcggtactactatgacaagaacatca 386
|||||||||| |||||||| |||||||| ||| | || |||||||||||||| |||||||
Sbjct: 212087094 ccaacatgaactatgacaaactcagccgtgccctccgttactactatgacaaaaacatca 212087035
Query: 387 t 387
|
Sbjct: 212087034 t 212087034
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,749,840
Number of extensions: 404
Number of successful extensions: 404
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 8
Length of query: 1563
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1542
Effective length of database: 2,808,413,156
Effective search space: 4330573086552
Effective search space used: 4330573086552
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)