Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002233
(1304 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071580.1| acyl-CoA synthetase family member 2, mitocho... 611 e-175
Alignment gi|NP_001157401.1| acetoacetyl-CoA synthetase [Bos taurus]. 68 2e-11
Alignment gi|NP_001069135.1| solute carrier family 27 (fatty acid transpo... 65 1e-10
Alignment gi|XP_002700920.1| PREDICTED: solute carrier family 27 (fatty a... 65 1e-10
Alignment gi|XP_002688930.1| PREDICTED: acyl-CoA synthetase bubblegum fam... 64 3e-10
Alignment gi|XP_001790634.1| PREDICTED: bubblegum-related acyl-CoA synthe... 64 3e-10
Alignment gi|NP_001096743.1| bile acyl-CoA synthetase [Bos taurus]. 62 9e-10
Alignment gi|NP_001179792.1| very long-chain acyl-CoA synthetase [Bos tau... 62 1e-09
Alignment gi|XP_002690976.1| PREDICTED: solute carrier family 27 (fatty a... 62 1e-09
Alignment gi|NP_777171.1| acetyl-coenzyme A synthetase 2-like, mitochondr... 55 1e-07
>ref|NP_001071580.1| acyl-CoA synthetase family member 2, mitochondrial precursor [Bos
taurus].
Length = 615
Score = 611 bits (1575), Expect = e-175
Identities = 302/352 (85%), Positives = 327/352 (92%)
Frame = +1
Query: 163 MAVYLGMLRVVRLCAGRPEVLGAGGGLSRVWQEARLWGVRPLSSGEVDHTAPLPIGGLSY 342
MAVY+GMLRV RLCA P VLGA GLSRVWQEARLWGVRPLSSGE+DHT PLP+GG SY
Sbjct: 1 MAVYVGMLRVARLCARSPRVLGARVGLSRVWQEARLWGVRPLSSGELDHTVPLPVGGFSY 60
Query: 343 IQGNTKLRLINKTVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLSIG 522
+QG+ L L NKTVG CLDATAQ++PD+EALVV HENIRLTFAQLKE+VDKAA+GLLSIG
Sbjct: 61 VQGHVGLHLSNKTVGRCLDATAQRVPDQEALVVHHENIRLTFAQLKEEVDKAASGLLSIG 120
Query: 523 LRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQ 702
LRKGDRLGMWGPNSYAWVL+QLATAQAGIILVSVNPAYQA ELEYALKKVGCKALVFPKQ
Sbjct: 121 LRKGDRLGMWGPNSYAWVLMQLATAQAGIILVSVNPAYQAMELEYALKKVGCKALVFPKQ 180
Query: 703 FKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQ 882
FKTQQYYNILKQICPEVEKA+PGALKSQRLPDLT VISVD LPGTL LD+VVAAG+QEQ
Sbjct: 181 FKTQQYYNILKQICPEVEKAQPGALKSQRLPDLTTVISVDAHLPGTLLLDEVVAAGSQEQ 240
Query: 883 HLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEK 1062
+L +LRHTQ+FLSCHDPINIQFTSGTTGSPKGATLSHYNIVNN+NMIG+RL+L QKT E+
Sbjct: 241 NLTRLRHTQQFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNANMIGQRLRLHQKTPEE 300
Query: 1063 SRMVLPTPLYHCLGSVGGTMVSLMHGVTLILSSPVFDGKKALEAINRERGSF 1218
SR+VLP+PLYHCLGSVGGTMVSLMHGVTLIL SPVF+GKK LEAI+RERG F
Sbjct: 301 SRVVLPSPLYHCLGSVGGTMVSLMHGVTLILCSPVFEGKKTLEAISRERGCF 352
>ref|NP_001157401.1| acetoacetyl-CoA synthetase [Bos taurus].
Length = 672
Score = 68.2 bits (165), Expect = 2e-11
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 8/193 (4%)
Frame = +1
Query: 421 DKEALVVFHEN----IRLTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYAWVLIQL 588
D+ AL V E +++TF +L++QV AA + +G+R+GDR+ + PNS V L
Sbjct: 112 DRVALYVAREGKEEIVKVTFEELRQQVALFAAAMRKMGVRRGDRVVGYLPNSAHAVEAML 171
Query: 589 ATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQ---FKTQQYYNILKQICPEVEK 759
A A G I S +P + + ++ K L+F + + +++ ++ K V K
Sbjct: 172 AAASIGAIWSSTSPDFGVNGVLDRFSQIQPK-LIFSVEAVVYNGKEHSHMDK--LQRVVK 228
Query: 760 AKPGALKSQRLPDLTIVISVD-TPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFLSCHDPI 936
P K +P ++ +D + +P ++FL+D +A G +Q QL Q L P+
Sbjct: 229 GLPDLKKVVLIPYISSREKIDISKIPNSVFLEDFLATGQGDQ-APQLEFEQ--LPFSHPL 285
Query: 937 NIQFTSGTTGSPK 975
I F+SGTTG+PK
Sbjct: 286 FIMFSSGTTGAPK 298
>ref|NP_001069135.1| solute carrier family 27 (fatty acid transporter), member 4 [Bos
taurus].
Length = 643
Score = 65.5 bits (158), Expect = 1e-10
Identities = 70/281 (24%), Positives = 116/281 (41%), Gaps = 5/281 (1%)
Frame = +1
Query: 328 GGLSYIQGNTKLRLI---NKTVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKA 498
GG ++ K+R +TV AT Q+ PDK AL+ + TF QL +
Sbjct: 55 GGTVLLRVKAKVRRYLRERRTVPILFAATVQRHPDKTALIFEGTDTHWTFRQLDNYSNSV 114
Query: 499 AAGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGC 678
A L + GL GD + ++ N +V + L A+ G+ +N + L + L
Sbjct: 115 ANFLQAQGLASGDVVALFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALLHCLTSSQA 174
Query: 679 KALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVISVDTPLPGTLFLDDV 858
+ALVF + I + P + G + +P GT LD +
Sbjct: 175 RALVFGSEM-APAVLEIHANLDPSLNFFCSGPWEPSTVP------------AGTKHLDPL 221
Query: 859 VAAGNQEQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNMI--GER 1032
+ + Q R + F+ D + +TSGTTG PK A + H + ++ G R
Sbjct: 222 LEDAPKHQ---PSRPNKGFV---DKLFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFR 275
Query: 1033 LQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHGVTLIL 1155
++ + PLYH G++ G L+HG+T+++
Sbjct: 276 MRPDDIVYD------CLPLYHSAGNIVGIGQCLIHGMTVVI 310
>ref|XP_002700920.1| PREDICTED: solute carrier family 27 (fatty acid transporter), member
4-like [Bos taurus].
Length = 643
Score = 65.5 bits (158), Expect = 1e-10
Identities = 70/281 (24%), Positives = 116/281 (41%), Gaps = 5/281 (1%)
Frame = +1
Query: 328 GGLSYIQGNTKLRLI---NKTVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKA 498
GG ++ K+R +TV AT Q+ PDK AL+ + TF QL +
Sbjct: 55 GGTVLLRVKAKVRRYLRERRTVPILFAATVQRHPDKTALIFEGTDTHWTFRQLDNYSNSV 114
Query: 499 AAGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGC 678
A L + GL GD + ++ N +V + L A+ G+ +N + L + L
Sbjct: 115 ANFLQAQGLASGDVVALFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALLHCLTSSQA 174
Query: 679 KALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVISVDTPLPGTLFLDDV 858
+ALVF + I + P + G + +P GT LD +
Sbjct: 175 RALVFGSEM-APAVLEIHANLDPSLNFFCSGPWEPSTVP------------AGTKHLDPL 221
Query: 859 VAAGNQEQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNMI--GER 1032
+ + Q R + F+ D + +TSGTTG PK A + H + ++ G R
Sbjct: 222 LEDAPKHQ---PSRPNKGFV---DKLFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFR 275
Query: 1033 LQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHGVTLIL 1155
++ + PLYH G++ G L+HG+T+++
Sbjct: 276 MRPDDIVYD------CLPLYHSAGNIVGIGQCLIHGMTVVI 310
>ref|XP_002688930.1| PREDICTED: acyl-CoA synthetase bubblegum family member 2 [Bos
taurus].
Length = 678
Score = 63.9 bits (154), Expect = 3e-10
Identities = 59/237 (24%), Positives = 92/237 (38%), Gaps = 2/237 (0%)
Frame = +1
Query: 460 LTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQ 639
L + Q E K A +L +GL +G+ G NS W+L L AG V +
Sbjct: 88 LNYNQYYEACRKTARAMLKLGLEPFHSVGILGFNSIEWILAALGAIFAGGFCVGIYATNF 147
Query: 640 APELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVISV 819
A EY + L+ + Q+ +I + K + Q P +
Sbjct: 148 ADACEYVITHAKVNILLLENNAQLQKILSI------PMNKMETLKAIVQYKPPVD----- 196
Query: 820 DTPLPGTLFLDDVVAAGNQ--EQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGATLSH 993
D+ DD + G+ + L Q+ +QK C I +TSGTTG PKG LSH
Sbjct: 197 DSKCENLYSWDDFLELGSSIPDAQLDQIIKSQKANQC---AVIIYTSGTTGQPKGVMLSH 253
Query: 994 YNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHGVTLILSSP 1164
NI + + + L+ ++ +V PL H + V + G + + P
Sbjct: 254 DNITWTAGSVAKECNLAYAPEKQEVVVSYLPLSHIAAQMMDVWVPIKVGAFIYFAEP 310
>ref|XP_001790634.1| PREDICTED: bubblegum-related acyl-CoA synthetase 2 [Bos taurus].
Length = 678
Score = 63.9 bits (154), Expect = 3e-10
Identities = 59/237 (24%), Positives = 92/237 (38%), Gaps = 2/237 (0%)
Frame = +1
Query: 460 LTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQ 639
L + Q E K A +L +GL +G+ G NS W+L L AG V +
Sbjct: 88 LNYNQYYEACRKTARAMLKLGLEPFHSVGILGFNSIEWILAALGAIFAGGFCVGIYATNF 147
Query: 640 APELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVISV 819
A EY + L+ + Q+ +I + K + Q P +
Sbjct: 148 ADACEYVITHAKVNILLLENNAQLQKILSI------PMNKMETLKAIVQYKPPVD----- 196
Query: 820 DTPLPGTLFLDDVVAAGNQ--EQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGATLSH 993
D+ DD + G+ + L Q+ +QK C I +TSGTTG PKG LSH
Sbjct: 197 DSKCENLYSWDDFLELGSSIPDAQLDQIIKSQKANQC---AVIIYTSGTTGQPKGVMLSH 253
Query: 994 YNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHGVTLILSSP 1164
NI + + + L+ ++ +V PL H + V + G + + P
Sbjct: 254 DNITWTAGSVAKECNLAYAPEKQEVVVSYLPLSHIAAQMMDVWVPIKVGAFIYFAEP 310
>ref|NP_001096743.1| bile acyl-CoA synthetase [Bos taurus].
Length = 690
Score = 62.4 bits (150), Expect = 9e-10
Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 7/240 (2%)
Frame = +1
Query: 460 LTFAQLKEQVDKAA-------AGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILV 618
+TF +L + +AA AG+ + R+ L + + + L A+ G +V
Sbjct: 143 VTFQELDTRACQAAWALKAELAGVAGLRAREPTALLVLPSQMLPALSLWLGLAKLGCPVV 202
Query: 619 SVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPD 798
+NP + P L +A+ G + LV + + L+++ P+++ K L R
Sbjct: 203 WINPHGRGPPLVHAVLSSGARVLVVDPELRAN-----LEEVLPKLQAEKVHCLYLGR--- 254
Query: 799 LTIVISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKG 978
+P PG L +AA + A LR K S P +TSGTTG PK
Sbjct: 255 -------SSPTPGVGALGAALAAAPSDPVPADLRADIKLRS---PALFIYTSGTTGLPKP 304
Query: 979 ATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHGVTLILS 1158
A L++ ++ + M L L TA+ + PLYH +G V G + L GVT +L+
Sbjct: 305 AILTYERVLQVAGM----LTLCGVTAD-DVVYTALPLYHTMGLVLGVLSCLDLGVTCVLA 359
>ref|NP_001179792.1| very long-chain acyl-CoA synthetase [Bos taurus].
Length = 620
Score = 61.6 bits (148), Expect = 1e-09
Identities = 66/272 (24%), Positives = 114/272 (41%), Gaps = 2/272 (0%)
Frame = +1
Query: 346 QGNTKLRLINKTVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLS-IG 522
+ N K R + +T+ + Q+ P K L+ E T+AQ+ + ++ A L +G
Sbjct: 44 RSNGKRRPV-RTILYAFLDKVQQTPHKPFLLFRDETF--TYAQVDRRSNQVARALRDHLG 100
Query: 523 LRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQ 702
LR+GD + ++ N A++ + L + G + +N + L + + G K L+
Sbjct: 101 LRQGDCVAIFMGNEPAYIWLWLGLIKLGCAMACLNYNIRGKSLLHCFQCSGAKVLL---- 156
Query: 703 FKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIV-ISVDTPLPGTLFLDDVVAAGNQE 879
+ PE++ A L S + D+ + +S + G D V + E
Sbjct: 157 ------------VSPELQAAVEEVLPSLKKDDVAVYYVSRTSNTDGVNSFLDKVDEVSSE 204
Query: 880 QHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAE 1059
R F + P +TSGTTG PK A ++H I G L ++ K +
Sbjct: 205 PVPESWRSEVTFST---PALYIYTSGTTGLPKAAKINHQRI-----WYGIGLAIASKVTQ 256
Query: 1060 KSRMVLPTPLYHCLGSVGGTMVSLMHGVTLIL 1155
+ P PLYH + G ++ G TL+L
Sbjct: 257 DDVIYSPLPLYHSAALLIGLHGCMVTGATLVL 288
>ref|XP_002690976.1| PREDICTED: solute carrier family 27 (fatty acid transporter), member
2 isoform 1 [Bos taurus].
Length = 620
Score = 61.6 bits (148), Expect = 1e-09
Identities = 66/272 (24%), Positives = 114/272 (41%), Gaps = 2/272 (0%)
Frame = +1
Query: 346 QGNTKLRLINKTVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLS-IG 522
+ N K R + +T+ + Q+ P K L+ E T+AQ+ + ++ A L +G
Sbjct: 44 RSNGKRRPV-RTILYAFLDKVQQTPHKPFLLFRDETF--TYAQVDRRSNQVARALRDHLG 100
Query: 523 LRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQ 702
LR+GD + ++ N A++ + L + G + +N + L + + G K L+
Sbjct: 101 LRQGDCVAIFMGNEPAYIWLWLGLIKLGCAMACLNYNIRGKSLLHCFQCSGAKVLL---- 156
Query: 703 FKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIV-ISVDTPLPGTLFLDDVVAAGNQE 879
+ PE++ A L S + D+ + +S + G D V + E
Sbjct: 157 ------------VSPELQAAVEEVLPSLKKDDVAVYYVSRTSNTDGVNSFLDKVDEVSSE 204
Query: 880 QHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAE 1059
R F + P +TSGTTG PK A ++H I G L ++ K +
Sbjct: 205 PVPESWRSEVTFST---PALYIYTSGTTGLPKAAKINHQRI-----WYGIGLAIASKVTQ 256
Query: 1060 KSRMVLPTPLYHCLGSVGGTMVSLMHGVTLIL 1155
+ P PLYH + G ++ G TL+L
Sbjct: 257 DDVIYSPLPLYHSAALLIGLHGCMVTGATLVL 288
>ref|NP_777171.1| acetyl-coenzyme A synthetase 2-like, mitochondrial [Bos taurus].
Length = 675
Score = 55.1 bits (131), Expect = 1e-07
Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 7/203 (3%)
Frame = +1
Query: 391 CLDATAQKIPDKEALVVFHEN----IRLTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGP 558
CLD QK P+ AL+ + +++T+ +L E + A L G+R+GDR+ ++ P
Sbjct: 100 CLDQHVQKSPESIALIWERDEPGTEVKITYRELLETTCRLANTLKRYGVRRGDRVAIYMP 159
Query: 559 NSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQ 738
S V LA A+ G I + + L + CK ++ Q LK+
Sbjct: 160 VSPLAVAAMLACARIGAIHNVIFAGFSVGSLAGRINDAQCKVVITFNQGLRGGRVVQLKK 219
Query: 739 ICPEVEKAKPG---ALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQ 909
I E K P L + R + + +D L + ++ V A
Sbjct: 220 IVDEAIKVCPSVQHVLVAHRTDNKVHMGHLDVSLEQEMAKEEPVCA-------------P 266
Query: 910 KFLSCHDPINIQFTSGTTGSPKG 978
+ + D + + +TSG+TG PKG
Sbjct: 267 ESMGSEDILFLLYTSGSTGKPKG 289
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,591,777
Number of extensions: 2025894
Number of successful extensions: 10612
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 10489
Number of HSP's successfully gapped: 16
Length of query: 434
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 329
Effective length of database: 14,207,134
Effective search space: 4674147086
Effective search space used: 4674147086
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002233
(1304 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537673.2| PREDICTED: similar to F46E10.1a [Canis familiar... 565 e-164
Alignment gi|XP_533936.2| PREDICTED: similar to bubblegum related protein... 70 4e-12
Alignment gi|XP_543365.2| PREDICTED: similar to acetoacetyl-CoA synthetas... 68 2e-11
Alignment gi|XP_541951.2| PREDICTED: similar to solute carrier family 27 ... 60 4e-09
Alignment gi|XP_852366.1| PREDICTED: similar to solute carrier family 27 ... 60 4e-09
Alignment gi|XP_548438.2| PREDICTED: similar to solute carrier family 27 ... 60 4e-09
Alignment gi|XP_535473.2| PREDICTED: similar to Very-long-chain acyl-CoA ... 57 4e-08
Alignment gi|XP_862254.1| PREDICTED: similar to Very-long-chain acyl-CoA ... 52 2e-06
Alignment gi|XP_536214.2| PREDICTED: similar to lipidosin [Canis familiar... 52 2e-06
Alignment gi|XP_534395.2| PREDICTED: similar to Acetyl-coenzyme A synthet... 49 8e-06
>ref|XP_537673.2| PREDICTED: similar to F46E10.1a [Canis familiaris].
Length = 652
Score = 565 bits (1455), Expect(2) = e-164
Identities = 279/354 (78%), Positives = 318/354 (89%)
Frame = +1
Query: 157 RAMAVYLGMLRVVRLCAGRPEVLGAGGGLSRVWQEARLWGVRPLSSGEVDHTAPLPIGGL 336
RA+A+Y+GMLR+ RLCAG P LGA L+R WQEARL GVRP SSGE DHT LP GGL
Sbjct: 36 RALAIYVGMLRLGRLCAGTPGALGARTVLARGWQEARLQGVRPFSSGEADHTVLLPTGGL 95
Query: 337 SYIQGNTKLRLINKTVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLS 516
SYIQG T+ LI+KTVG CL+ATAQ++PD EALV+ ENIR+TFAQL+E+VDKAA+GLLS
Sbjct: 96 SYIQGPTRHSLIHKTVGQCLEATAQRMPDIEALVIPQENIRVTFAQLQEEVDKAASGLLS 155
Query: 517 IGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFP 696
IGL KGDRLGMWGPNSYAWVL+QLATA+AGIILVSVNPAYQA ELEYALKKVGCKAL FP
Sbjct: 156 IGLCKGDRLGMWGPNSYAWVLLQLATARAGIILVSVNPAYQAMELEYALKKVGCKALAFP 215
Query: 697 KQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQ 876
KQFKTQQYYNILKQICPE+EKA+PG+LKSQRLP+LT VISVD PLPGTL LD+VV G++
Sbjct: 216 KQFKTQQYYNILKQICPELEKAQPGSLKSQRLPELTTVISVDDPLPGTLLLDEVVETGSK 275
Query: 877 EQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTA 1056
EQHLAQLR+TQ+FLSCHDPINIQFTSGTTG+PKGATLSHYNIVNNSN+IG+RL++ K
Sbjct: 276 EQHLAQLRYTQQFLSCHDPINIQFTSGTTGNPKGATLSHYNIVNNSNLIGDRLKMHLKPP 335
Query: 1057 EKSRMVLPTPLYHCLGSVGGTMVSLMHGVTLILSSPVFDGKKALEAINRERGSF 1218
E+ RM+LP+PLYHCLGSVGGTMVS+M+G TLILSSP F+GKKALEAI++ERGSF
Sbjct: 336 EEKRMILPSPLYHCLGSVGGTMVSVMYGTTLILSSPTFNGKKALEAISKERGSF 389
Score = 35.0 bits (79), Expect(2) = e-164
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +3
Query: 1215 FLYGTPTMFVDILTHRDF 1268
FLYGTPTMFVDIL DF
Sbjct: 389 FLYGTPTMFVDILNQPDF 406
>ref|XP_533936.2| PREDICTED: similar to bubblegum related protein [Canis familiaris].
Length = 689
Score = 70.1 bits (170), Expect = 4e-12
Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 2/237 (0%)
Frame = +1
Query: 460 LTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQ 639
L F Q E KAA L+ +GL++ +G+ G NS W++ L AG + V +
Sbjct: 94 LNFNQYYEACRKAARALIKLGLQRFHGVGILGFNSVEWLIASLGAILAGGLCVGIYATNS 153
Query: 640 APELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVISV 819
A +Y + L+ + Q+ +I P+ A+ +LP V
Sbjct: 154 ADACQYVITNAKVNVLLVENDLQLQKILSI-----PQSRMETLKAIIQYKLP-------V 201
Query: 820 DTPLPGTLFLDDVVAAGNQ--EQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGATLSH 993
+D + GN + L Q+ +Q+ C I +TSGT G+PKG LSH
Sbjct: 202 KESNNNLYSWNDFMELGNSIPDSQLDQIIESQRANQC---AVIIYTSGTLGNPKGVMLSH 258
Query: 994 YNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHGVTLILSSP 1164
NI + + + LS ++ +V PL H + + + G + + P
Sbjct: 259 DNITWTAGAVAKNCSLSNAAEKQEVVVSYLPLSHVAAQMMDVWIPMKIGAFIYFAQP 315
>ref|XP_543365.2| PREDICTED: similar to acetoacetyl-CoA synthetase [Canis
familiaris].
Length = 780
Score = 67.8 bits (164), Expect = 2e-11
Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 4/180 (2%)
Frame = +1
Query: 448 ENIRLTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVN 627
E +++TF +L++QV AA + +G+++GDR+ + PN V LA A G + S +
Sbjct: 233 EIVKVTFEELRQQVALFAAAMRKMGVKQGDRVVGYLPNGVHAVEAMLAAASIGAVWSSTS 292
Query: 628 PAYQAPELEYALKKVGCKALVFPKQ---FKTQQYYNILKQICPEVEKAKPGALKSQRLPD 798
P + + ++ K L+F + + +++Y ++ K +V K P K +P
Sbjct: 293 PDFGVNGVLDRFSQIQPK-LIFSVEAVVYNSKEYSHMDK--LQQVVKGLPDLKKVVLIPY 349
Query: 799 LTIVISVD-TPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPK 975
++ +D + +P ++FLDD +A EQ QL Q L P+ I F+SGTTG+PK
Sbjct: 350 ISSKEKIDISKIPNSVFLDDFLATRKGEQ-APQLEFEQ--LPFSHPLFIMFSSGTTGAPK 406
>ref|XP_541951.2| PREDICTED: similar to solute carrier family 27 (fatty acid
transporter), member 1 isoform 1 [Canis familiaris].
Length = 646
Score = 60.5 bits (145), Expect = 4e-09
Identities = 69/262 (26%), Positives = 109/262 (41%), Gaps = 3/262 (1%)
Frame = +1
Query: 379 TVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGP 558
T+ AQ+ PD+ ALV ++ TFAQL + A +G GD + ++
Sbjct: 77 TIPRIFQVVAQQQPDRLALVDAGSDVCWTFAQLDAYSNAVANLFCQLGFTPGDVVAIFLE 136
Query: 559 NSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQ 738
+V + L A+ G+ +N + L + L G KAL+F + T + Q
Sbjct: 137 GRPEFVGLWLGLAKVGVEAALLNVNLRREPLAFCLGTSGAKALIFGGEL-TAAVAEVSGQ 195
Query: 739 ICPEVEKAKPGALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFL 918
+ + K G L + + LP T FLD ++ +E A L
Sbjct: 196 LGKSLLKFCSGELGPEGI------------LPDTQFLDPLL----KEASTAPLAQPPD-K 238
Query: 919 SCHDPINIQFTSGTTGSPKGATLSH---YNIVNNSNMIGERLQLSQKTAEKSRMVLPTPL 1089
D + +TSGTTG PK A + H Y I + S + A+ L PL
Sbjct: 239 GMDDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHH-----AYSMQVADVLYDCL--PL 291
Query: 1090 YHCLGSVGGTMVSLMHGVTLIL 1155
YH G++ G L++G+T++L
Sbjct: 292 YHTAGNIMGVGQCLIYGLTVVL 313
>ref|XP_852366.1| PREDICTED: similar to solute carrier family 27 (fatty acid
transporter), member 1 isoform 2 [Canis familiaris].
Length = 653
Score = 60.5 bits (145), Expect = 4e-09
Identities = 69/262 (26%), Positives = 109/262 (41%), Gaps = 3/262 (1%)
Frame = +1
Query: 379 TVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGP 558
T+ AQ+ PD+ ALV ++ TFAQL + A +G GD + ++
Sbjct: 84 TIPRIFQVVAQQQPDRLALVDAGSDVCWTFAQLDAYSNAVANLFCQLGFTPGDVVAIFLE 143
Query: 559 NSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQ 738
+V + L A+ G+ +N + L + L G KAL+F + T + Q
Sbjct: 144 GRPEFVGLWLGLAKVGVEAALLNVNLRREPLAFCLGTSGAKALIFGGEL-TAAVAEVSGQ 202
Query: 739 ICPEVEKAKPGALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFL 918
+ + K G L + + LP T FLD ++ +E A L
Sbjct: 203 LGKSLLKFCSGELGPEGI------------LPDTQFLDPLL----KEASTAPLAQPPD-K 245
Query: 919 SCHDPINIQFTSGTTGSPKGATLSH---YNIVNNSNMIGERLQLSQKTAEKSRMVLPTPL 1089
D + +TSGTTG PK A + H Y I + S + A+ L PL
Sbjct: 246 GMDDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHH-----AYSMQVADVLYDCL--PL 298
Query: 1090 YHCLGSVGGTMVSLMHGVTLIL 1155
YH G++ G L++G+T++L
Sbjct: 299 YHTAGNIMGVGQCLIYGLTVVL 320
>ref|XP_548438.2| PREDICTED: similar to solute carrier family 27 (fatty acid
transporter), member 4 [Canis familiaris].
Length = 717
Score = 60.5 bits (145), Expect = 4e-09
Identities = 67/281 (23%), Positives = 115/281 (40%), Gaps = 5/281 (1%)
Frame = +1
Query: 328 GGLSYIQGNTKLRLI---NKTVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKA 498
GG+ ++ K+R +TV + Q+ PDK AL+ + TF QL +
Sbjct: 129 GGMVLLKVKAKVRRYLREQRTVPILFASMVQRHPDKTALIFEGTDTHWTFRQLDDYSSSV 188
Query: 499 AAGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGC 678
A L + GL GD ++ N +V + L A+ G+ +N + L + L
Sbjct: 189 ANFLQARGLASGDVAALFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALCHCLTTSQA 248
Query: 679 KALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVISVDTPLPGTLFLDDV 858
+ L+F + + I + P + G + LP T LD +
Sbjct: 249 RVLIFGSEM-APAIFEIQASLDPSLSLFCSGPWEPSTLP------------ASTEHLDPL 295
Query: 859 VAAGNQEQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNMI--GER 1032
+ + +HL R + F D + +TSGTTG PK A + H + ++ G R
Sbjct: 296 LE--DAPKHLPS-RPDKGFT---DKLFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFR 349
Query: 1033 LQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHGVTLIL 1155
++ + PLYH G++ G L+HG+T+++
Sbjct: 350 MRPDDIVYD------CLPLYHSAGNIVGIGQCLLHGMTVVI 384
>ref|XP_535473.2| PREDICTED: similar to Very-long-chain acyl-CoA synthetase
(Very-long-chain-fatty-acid-CoA ligase) isoform 1 [Canis
familiaris].
Length = 620
Score = 57.0 bits (136), Expect = 4e-08
Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 2/262 (0%)
Frame = +1
Query: 376 KTVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLS-IGLRKGDRLGMW 552
+T+ A+++P K L+ F + + LT+AQ+ + ++ A L +GLR+GD + ++
Sbjct: 53 RTIQHLFREKARQLPHKPFLL-FRDEV-LTYAQVDRRSNQVARALRDHVGLRQGDCVAIF 110
Query: 553 GPNSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNIL 732
N A+V + L A+ G + +N + L + + G K L+
Sbjct: 111 MGNHPAYVWLWLGLAKLGCAMACLNCNIRGKSLLHCFQCCGAKVLL-------------- 156
Query: 733 KQICPEVEKAKPGALKSQRLPDLTI-VISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQ 909
PE+++A L S + +++I +S + G L D V + E R
Sbjct: 157 --ASPELQEAIEEVLPSLKKDNVSIYYVSRTSNTDGVNSLLDKVDEVSTEAIPESWRSEV 214
Query: 910 KFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPL 1089
F + P +TSGTTG PK A ++H + G E + PL
Sbjct: 215 TFSA---PALYIYTSGTTGLPKAAMINHQRL-----WYGTGFAYVSGIKEDYVIYTTLPL 266
Query: 1090 YHCLGSVGGTMVSLMHGVTLIL 1155
YH + G ++ G TL+L
Sbjct: 267 YHSAALIVGLHGCIVAGATLVL 288
>ref|XP_862254.1| PREDICTED: similar to Very-long-chain acyl-CoA synthetase
(Very-long-chain-fatty-acid-CoA ligase) isoform 2 [Canis
familiaris].
Length = 620
Score = 51.6 bits (122), Expect = 2e-06
Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 2/261 (0%)
Frame = +1
Query: 376 KTVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLS-IGLRKGDRLGMW 552
+T+ A+++P K L+ F + + LT+AQ+ + ++ A L +GLR+GD + ++
Sbjct: 53 RTIQHLFREKARQLPHKPFLL-FRDEV-LTYAQVDRRSNQVARALRDHVGLRQGDCVAIF 110
Query: 553 GPNSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNIL 732
N A+V + L A+ G + +N + L + + G K L+
Sbjct: 111 MGNHPAYVWLWLGLAKLGCAMACLNCNIRGKSLLHCFQCCGAKVLL-------------- 156
Query: 733 KQICPEVEKAKPGALKSQRLPDLTI-VISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQ 909
PE+++A L S + +++I +S + G L D V + E R
Sbjct: 157 --ASPELQEAIEEVLPSLKKDNVSIYYVSRTSNTDGVNSLLDKVDEVSTEAIPESWRSEV 214
Query: 910 KFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPL 1089
F + P +TSGTTG PK A ++H + G E + PL
Sbjct: 215 TFSA---PALYIYTSGTTGLPKAAMINHQRL-----WYGTGFAYVSGIKEDYVIYTTLPL 266
Query: 1090 YHCLGSVGGTMVSLMHGVTLI 1152
YH + G ++ G L+
Sbjct: 267 YHSAALIVGLHGCIVAGEFLL 287
>ref|XP_536214.2| PREDICTED: similar to lipidosin [Canis familiaris].
Length = 821
Score = 51.6 bits (122), Expect = 2e-06
Identities = 51/241 (21%), Positives = 95/241 (39%), Gaps = 6/241 (2%)
Frame = +1
Query: 460 LTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQ 639
++++Q + A G L +GL + + + G NS W + T AG I+ +
Sbjct: 230 ISYSQYYLLARRTAKGFLKLGLEQAHSVAILGFNSPEWFFSAVGTVFAGGIVTGIYTTSS 289
Query: 640 APELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDL-TIVIS 816
+ +Y +V Q + ++ + K LP L +VI
Sbjct: 290 SEACQYIAHDSRANIIVVDTQKQLEKILKVWKN-----------------LPHLKAVVIY 332
Query: 817 VDTP---LPGTLFLDDVVAAGNQ--EQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGA 981
+ P + +++++ G++ E+ L + +TQ+ C I +TSGTTGSPKG
Sbjct: 333 GEAPPKKMANVYTMEELMELGDELLEETLDAIINTQQPNQCCVLI---YTSGTTGSPKGV 389
Query: 982 TLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHGVTLILSS 1161
LS NI + + + ++ +V PL H + + G + +
Sbjct: 390 MLSQDNITWTARYGSQAGDIQPAEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFAE 449
Query: 1162 P 1164
P
Sbjct: 450 P 450
>ref|XP_534395.2| PREDICTED: similar to Acetyl-coenzyme A synthetase, cytoplasmic
(Acetate--CoA ligase) (Acyl-activating enzyme)
(Acetyl-CoA synthetase) (ACS) (AceCS) [Canis
familiaris].
Length = 657
Score = 49.3 bits (116), Expect = 8e-06
Identities = 45/177 (25%), Positives = 77/177 (43%)
Frame = +1
Query: 448 ENIRLTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVN 627
E ++T+ +L QV + + L G+RKGDR+ ++ P V+ LA A+ G + V
Sbjct: 132 ETTQITYRELLVQVCRFSNVLQKQGIRKGDRVAIYMPMIPELVVAMLACARLGALHSIVF 191
Query: 628 PAYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTI 807
+ A L + C L+ F + LK++ E AL+ R +
Sbjct: 192 AGFSAESLCERILDSSCSLLITTDAFYRGEKLVNLKELADE-------ALEKCREKMTIL 244
Query: 808 VISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKG 978
++ D L + V ++ A+ ++ DP+ I +TSG+TG PKG
Sbjct: 245 ILKQDASL-RISWNQGVDLWWHELMQEAEDECEPEWCDAEDPLFILYTSGSTGKPKG 300
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,178,187
Number of extensions: 2071285
Number of successful extensions: 11012
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 10915
Number of HSP's successfully gapped: 12
Length of query: 434
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 328
Effective length of database: 15,340,888
Effective search space: 5031811264
Effective search space used: 5031811264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002233
(1304 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079425.3| acyl-CoA synthetase family member 2, mitochondr... 558 e-159
Alignment gi|NP_076417.2| acetoacetyl-CoA synthetase [Homo sapiens]. 71 3e-12
Alignment gi|NP_115890.2| acetyl-coenzyme A synthetase 2-like, mitochondr... 59 1e-08
Alignment gi|NP_112186.3| long-chain-fatty-acid--CoA ligase ACSBG2 [Homo ... 57 4e-08
Alignment gi|NP_055977.3| long-chain-fatty-acid--CoA ligase ACSBG1 isofor... 57 5e-08
Alignment gi|NP_003636.2| very long-chain acyl-CoA synthetase isoform 1 [... 53 7e-07
Alignment gi|NP_060358.2| acyl-coenzyme A synthetase ACSM5, mitochondrial... 50 4e-06
Alignment gi|NP_036386.1| bile acyl-CoA synthetase [Homo sapiens]. 50 5e-06
>ref|NP_079425.3| acyl-CoA synthetase family member 2, mitochondrial precursor [Homo
sapiens].
Length = 615
Score = 558 bits (1437), Expect = e-159
Identities = 277/352 (78%), Positives = 311/352 (88%)
Frame = +1
Query: 163 MAVYLGMLRVVRLCAGRPEVLGAGGGLSRVWQEARLWGVRPLSSGEVDHTAPLPIGGLSY 342
MAVY+GMLR+ RLCAG VLGA LSR WQEARL GVR LSS EVD PIGGLSY
Sbjct: 1 MAVYVGMLRLGRLCAGSSGVLGARAALSRSWQEARLQGVRFLSSREVDRMVSTPIGGLSY 60
Query: 343 IQGNTKLRLINKTVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLSIG 522
+QG TK L +KTVG CL+ TAQ++P++EALVV HE++RLTFAQLKE+VDKAA+GLLSIG
Sbjct: 61 VQGCTKKHLNSKTVGQCLETTAQRVPEREALVVLHEDVRLTFAQLKEEVDKAASGLLSIG 120
Query: 523 LRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQ 702
L KGDRLGMWGPNSYAWVL+QLATAQAGIILVSVNPAYQA ELEY LKKVGCKALVFPKQ
Sbjct: 121 LCKGDRLGMWGPNSYAWVLMQLATAQAGIILVSVNPAYQAMELEYVLKKVGCKALVFPKQ 180
Query: 703 FKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQ 882
FKTQQYYN+LKQICPEVE A+PGALKSQRLPDLT VISVD PLPGTL LD+VVAAG+ Q
Sbjct: 181 FKTQQYYNVLKQICPEVENAQPGALKSQRLPDLTTVISVDAPLPGTLLLDEVVAAGSTRQ 240
Query: 883 HLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEK 1062
HL QL++ Q+FLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSN++GERL+L +KT E+
Sbjct: 241 HLDQLQYNQQFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNILGERLKLHEKTPEQ 300
Query: 1063 SRMVLPTPLYHCLGSVGGTMVSLMHGVTLILSSPVFDGKKALEAINRERGSF 1218
RM+LP PLYHCLGSV GTM+ LM+G TLIL+SP+F+GKKALEAI+RERG+F
Sbjct: 301 LRMILPNPLYHCLGSVAGTMMCLMYGATLILASPIFNGKKALEAISRERGTF 352
>ref|NP_076417.2| acetoacetyl-CoA synthetase [Homo sapiens].
Length = 672
Score = 70.9 bits (172), Expect = 3e-12
Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 8/193 (4%)
Frame = +1
Query: 421 DKEALVVFHEN----IRLTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYAWVLIQL 588
D+ AL + E +++TF +L+++V AA + +G++KGDR+ + PNS V L
Sbjct: 112 DRVALYIAREGKEEIVKVTFEELRQEVALFAAAMRKMGVKKGDRVVGYLPNSEHAVEAML 171
Query: 589 ATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQ---FKTQQYYNILKQICPEVEK 759
A A G I S +P + + ++ K L+F + + +++ ++ K +V K
Sbjct: 172 AAASIGAIWSSTSPDFGVNGVLDRFSQIQPK-LIFSVEAVVYNGKEHNHMEK--LQQVVK 228
Query: 760 AKPGALKSQRLPDLTIVISVD-TPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFLSCHDPI 936
P K +P ++ ++D + +P ++FLDD +A G EQ QL Q L P+
Sbjct: 229 GLPDLKKVVVIPYVSSRENIDLSKIPNSVFLDDFLATGTSEQ-APQLEFEQ--LPFSHPL 285
Query: 937 NIQFTSGTTGSPK 975
I F+SGTTG+PK
Sbjct: 286 FIMFSSGTTGAPK 298
>ref|NP_115890.2| acetyl-coenzyme A synthetase 2-like, mitochondrial precursor [Homo
sapiens].
Length = 689
Score = 58.5 bits (140), Expect = 1e-08
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 7/203 (3%)
Frame = +1
Query: 391 CLDATAQKIPDKEALVVFHEN----IRLTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGP 558
CLD +K P+ AL+ + +R+T+ +L E + A L G+ +GDR+ ++ P
Sbjct: 114 CLDQHVRKSPESVALIWERDEPGTEVRITYRELLETTCRLANTLKRHGVHRGDRVAIYMP 173
Query: 559 NSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQ 738
S V LA A+ G + + + A L + CK ++ Q LK+
Sbjct: 174 VSPLAVAAMLACARIGAVHTVIFAGFSAESLAGRINDAKCKVVITFNQGLRGGRVVELKK 233
Query: 739 ICPEVEKAKP---GALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQ 909
I E K P L + R + + +D PL + +D V A
Sbjct: 234 IVDEAVKHCPTVQHVLVAHRTDNKVHMGDLDVPLEQEMAKEDPVCA-------------P 280
Query: 910 KFLSCHDPINIQFTSGTTGSPKG 978
+ + D + + +TSG+TG PKG
Sbjct: 281 ESMGSEDMLFMLYTSGSTGMPKG 303
>ref|NP_112186.3| long-chain-fatty-acid--CoA ligase ACSBG2 [Homo sapiens].
Length = 666
Score = 57.0 bits (136), Expect = 4e-08
Identities = 55/202 (27%), Positives = 81/202 (40%), Gaps = 5/202 (2%)
Frame = +1
Query: 460 LTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQ 639
L F Q E KAA L+ +GL + +G+ G NS W + + AG + V +
Sbjct: 81 LNFNQYYEACRKAAKSLIKLGLERFHGVGILGFNSAEWFITAVGAILAGGLCVGIYATNS 140
Query: 640 APELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVISV 819
A +Y + L+ QQ IL ++ L L +I
Sbjct: 141 AEVCQYVITHAKVNILLVEND---QQLQKIL-------------SIPQSSLEPLKAIIQY 184
Query: 820 DTPLPGTLFL---DDVVAAGNQ--EQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGAT 984
P+ L DD + G + L Q+ +QK C I +TSGTTG PKG
Sbjct: 185 RLPMKKNNNLYSWDDFMELGRSIPDTQLEQVIESQKANQCAVLI---YTSGTTGIPKGVM 241
Query: 985 LSHYNIVNNSNMIGERLQLSQK 1050
LSH NI + + + +L+ K
Sbjct: 242 LSHDNITWIAGAVTKDFKLTDK 263
>ref|NP_055977.3| long-chain-fatty-acid--CoA ligase ACSBG1 isoform 1 [Homo sapiens].
Length = 724
Score = 56.6 bits (135), Expect = 5e-08
Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 6/241 (2%)
Frame = +1
Query: 460 LTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQ 639
++++Q +AA G L +GL++ + + G NS W + T AG I+ +
Sbjct: 133 ISYSQYYLLARRAAKGFLKLGLKQAHSVAILGFNSPEWFFSAVGTVFAGGIVTGIYTTSS 192
Query: 640 APELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVISV 819
+Y ++ Q + ++ I KQ LP L V+
Sbjct: 193 PEACQYIAYDCCANVIMVDTQKQLEKILKIWKQ-----------------LPHLKAVVIY 235
Query: 820 DTPLPGTLF----LDDVVAAGNQ--EQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGA 981
P P + +++ + GN+ E+ L + TQ+ C + +TSGTTG+PKG
Sbjct: 236 KEPPPNKMANVYTMEEFMELGNEVPEEALDAIIDTQQPNQC---CVLVYTSGTTGNPKGV 292
Query: 982 TLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHGVTLILSS 1161
LS NI + + + ++ +V PL H + + G + +
Sbjct: 293 MLSQDNITWTARYGSQAGDIRPAEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFAE 352
Query: 1162 P 1164
P
Sbjct: 353 P 353
>ref|NP_003636.2| very long-chain acyl-CoA synthetase isoform 1 [Homo sapiens].
Length = 620
Score = 52.8 bits (125), Expect = 7e-07
Identities = 63/252 (25%), Positives = 102/252 (40%), Gaps = 2/252 (0%)
Frame = +1
Query: 406 AQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLS-IGLRKGDRLGMWGPNSYAWVLI 582
A++ P K L+ E LT+AQ+ + ++ A L +GLR+GD + + N A+V +
Sbjct: 63 ARQTPHKPFLLFRDET--LTYAQVDRRSNQVARALHDHLGLRQGDCVALLMGNEPAYVWL 120
Query: 583 QLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKA 762
L + G + +N +A L + + G K L+ + PE++ A
Sbjct: 121 WLGLVKLGCAMACLNYNIRAKSLLHCFQCCGAKVLL----------------VSPELQAA 164
Query: 763 KPGALKSQRLPDLTI-VISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFLSCHDPIN 939
L S + D++I +S + G D V + E R F + P
Sbjct: 165 VEEILPSLKKDDVSIYYVSRTSNTDGIDSFLDKVDEVSTEPIPESWRSEVTFST---PAL 221
Query: 940 IQFTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGT 1119
+TSGTTG PK A ++H I G L + + P YH + G
Sbjct: 222 YIYTSGTTGLPKAAMITHQRI-----WYGTGLTFVSGLKADDVIYITLPFYHSAALLIGI 276
Query: 1120 MVSLMHGVTLIL 1155
++ G TL L
Sbjct: 277 HGCIVAGATLAL 288
>ref|NP_060358.2| acyl-coenzyme A synthetase ACSM5, mitochondrial precursor [Homo
sapiens].
Length = 579
Score = 50.4 bits (119), Expect = 4e-06
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
Frame = +1
Query: 454 IRLTFAQLKEQVDKAAAGLL-SIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNP 630
I+ +F +L +Q KAA L + GL+ GDR+ + P W L+ +A + G +++
Sbjct: 88 IKWSFEELGKQSRKAANVLGGACGLQPGDRMMLVLPRLPEWWLVSVACMRTGTVMIPGVT 147
Query: 631 AYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIV 810
+L+Y L+ K+++ + + + CP ++ T +
Sbjct: 148 QLTEKDLKYRLQASRAKSIITSDSLAPR--VDAISAECPSLQ---------------TKL 190
Query: 811 ISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPK 975
+ D+ PG L +++ + E + + + DP+ I FTSGTTG+PK
Sbjct: 191 LVSDSSRPGWLNFRELLREASTEHNCMRTKS-------RDPLAIYFTSGTTGAPK 238
>ref|NP_036386.1| bile acyl-CoA synthetase [Homo sapiens].
Length = 690
Score = 50.1 bits (118), Expect = 5e-06
Identities = 51/191 (26%), Positives = 79/191 (41%)
Frame = +1
Query: 586 LATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAK 765
L A+ G +NP + L +++ G + LV + L++I P+++
Sbjct: 192 LGLAKLGCPTAWINPHGRGMPLAHSVLSSGARVLVVDPDLRES-----LEEILPKLQAEN 246
Query: 766 PGALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFLSCHDPINIQ 945
+S +P PG L + A A LR ++ P
Sbjct: 247 IRCF----------YLSHTSPTPGVGALGAALDAAPSHPVPADLRAG---ITWRSPALFI 293
Query: 946 FTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTMV 1125
+TSGTTG PK A L+H ++ S M L LS TA+ + PLYH +G V G +
Sbjct: 294 YTSGTTGLPKPAILTHERVLQMSKM----LSLSGATAD-DVVYTVLPLYHVMGLVVGILG 348
Query: 1126 SLMHGVTLILS 1158
L G T +L+
Sbjct: 349 CLDLGATCVLA 359
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,659,989
Number of extensions: 2004175
Number of successful extensions: 9608
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9525
Number of HSP's successfully gapped: 8
Length of query: 434
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 329
Effective length of database: 14,835,944
Effective search space: 4881025576
Effective search space used: 4881025576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002233
(1304 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_722502.1| acyl-CoA synthetase family member 2, mitochondr... 533 e-154
Alignment gi|NP_001034203.1| long-chain-fatty-acid--CoA ligase ACSBG2 [Mu... 78 1e-14
Alignment gi|NP_084486.1| acetoacetyl-CoA synthetase [Mus musculus]. 67 4e-11
Alignment gi|NP_036108.2| very long-chain acyl-CoA synthetase [Mus muscul... 64 3e-10
Alignment gi|NP_542142.1| acetyl-coenzyme A synthetase 2-like, mitochondr... 63 6e-10
Alignment gi|NP_848873.1| acyl-coenzyme A synthetase ACSM5, mitochondrial... 60 5e-09
Alignment gi|NP_036107.1| long-chain fatty acid transport protein 1 [Mus ... 57 2e-08
Alignment gi|NP_444408.1| long-chain-fatty-acid--CoA ligase ACSBG1 [Mus m... 55 1e-07
Alignment gi|NP_033538.2| bile acyl-CoA synthetase [Mus musculus]. 51 2e-06
Alignment gi|NP_032007.2| long-chain-fatty-acid--CoA ligase 1 [Mus muscul... 49 9e-06
>ref|NP_722502.1| acyl-CoA synthetase family member 2, mitochondrial precursor [Mus
musculus].
Length = 615
Score = 533 bits (1374), Expect(2) = e-154
Identities = 266/351 (75%), Positives = 305/351 (86%)
Frame = +1
Query: 163 MAVYLGMLRVVRLCAGRPEVLGAGGGLSRVWQEARLWGVRPLSSGEVDHTAPLPIGGLSY 342
MAVY GMLR RLC G LSR ++L VR LSSG V+ T PLPIGGLSY
Sbjct: 1 MAVYHGMLRFGRLCIASLGARGPRTLLSRPRPNSKLQSVRALSSGMVNCTNPLPIGGLSY 60
Query: 343 IQGNTKLRLINKTVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLSIG 522
IQG+T L+N TVG CLDATAQ+ PD+EALV+ HENIRL FAQLKE+VDKAA+GLLSIG
Sbjct: 61 IQGHTDSHLVNTTVGECLDATAQRFPDREALVILHENIRLNFAQLKEEVDKAASGLLSIG 120
Query: 523 LRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQ 702
LRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQ+ ELEY L+KVGCK +VFPKQ
Sbjct: 121 LRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQSSELEYVLRKVGCKGIVFPKQ 180
Query: 703 FKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQ 882
FKTQQYY+ILKQ+CPE+EKA+PGALKS+RLPDLT VISVD PLPGTL LDD+VAAG +EQ
Sbjct: 181 FKTQQYYDILKQVCPELEKAQPGALKSERLPDLTTVISVDAPLPGTLLLDDIVAAGGKEQ 240
Query: 883 HLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEK 1062
+LAQLR+ Q+FLSC+DPINIQFTSGTTG+PKGATLSH+NIVNNS +IG+RL++ KTAE+
Sbjct: 241 NLAQLRYNQRFLSCYDPINIQFTSGTTGNPKGATLSHHNIVNNSMLIGQRLKMPTKTAEE 300
Query: 1063 SRMVLPTPLYHCLGSVGGTMVSLMHGVTLILSSPVFDGKKALEAINRERGS 1215
R+VLP+PLYHCLGSVGGTMVS+MHG TL+LSSP F+GKKALEAI+RE+G+
Sbjct: 301 LRLVLPSPLYHCLGSVGGTMVSMMHGATLLLSSPSFNGKKALEAISREKGT 351
Score = 32.7 bits (73), Expect(2) = e-154
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3
Query: 1218 LYGTPTMFVDILTHRDF 1268
LYGTPTMFVDIL DF
Sbjct: 353 LYGTPTMFVDILNQPDF 369
>ref|NP_001034203.1| long-chain-fatty-acid--CoA ligase ACSBG2 [Mus musculus].
Length = 667
Score = 78.2 bits (191), Expect = 1e-14
Identities = 60/235 (25%), Positives = 108/235 (45%)
Frame = +1
Query: 460 LTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQ 639
LTF+Q E KAA L+ +GL++ +G+ G NS WV+ L T AG + V +
Sbjct: 77 LTFSQYYEMCRKAAKSLIKLGLQRFQCVGILGFNSVEWVVTALGTILAGGLCVGIYATNS 136
Query: 640 APELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVISV 819
A +Y +++ L+ QQ IL ++E K A+ +LP + + ++
Sbjct: 137 AEACQYVIQQANVSILIVEND---QQLQKILLIPPDKMETVK--AIVQYKLPLMESMANL 191
Query: 820 DTPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKGATLSHYN 999
+ +D + GN ++ QL + I +TSGTTG+PKG LSH N
Sbjct: 192 YS-------WNDFMELGNDIPNI-QLDRVILSQKANQCAVILYTSGTTGTPKGVLLSHDN 243
Query: 1000 IVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHGVTLILSSP 1164
I + + + +++++ + +++ +V PL H + + + G + P
Sbjct: 244 ITWTAGAMSQEMEINRVSGKQNTIVSYLPLSHIAAQLTDIWIPIKIGALTFFAQP 298
>ref|NP_084486.1| acetoacetyl-CoA synthetase [Mus musculus].
Length = 672
Score = 66.6 bits (161), Expect = 4e-11
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 8/193 (4%)
Frame = +1
Query: 421 DKEALVVFHEN----IRLTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYAWVLIQL 588
D+ AL V E +++TF +L++QV AA + +G++KGDR+ + PNS V L
Sbjct: 112 DRVALYVAREGREEIVKVTFEELRQQVALFAAAMRKMGVKKGDRVVGYLPNSAHAVEAML 171
Query: 589 ATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQ---FKTQQYYNILKQICPEVEK 759
A A G I S +P + + ++ K L+F + + +++ ++ K V K
Sbjct: 172 AAASIGAIWSSTSPDFGVNGVLDRFSQIQPK-LIFSVEAVVYNGKEHGHLEK--LQRVVK 228
Query: 760 AKPGALKSQRLPDLTIVISVD-TPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFLSCHDPI 936
P + +P + +D + +P ++FLDD +A+G Q QL Q L P+
Sbjct: 229 GLPDLQRVVLIPYVLPREKIDISKIPNSVFLDDFLASGTGAQ-APQLEFEQ--LPFSHPL 285
Query: 937 NIQFTSGTTGSPK 975
I F+SGTTG+PK
Sbjct: 286 FIMFSSGTTGAPK 298
>ref|NP_036108.2| very long-chain acyl-CoA synthetase [Mus musculus].
Length = 620
Score = 63.9 bits (154), Expect = 3e-10
Identities = 66/253 (26%), Positives = 109/253 (43%), Gaps = 1/253 (0%)
Frame = +1
Query: 406 AQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLS-IGLRKGDRLGMWGPNSYAWVLI 582
A+K P K L+ E LT+AQ+ + ++ A L +GLR+GD + ++ N A+V I
Sbjct: 63 ARKTPHKPFLLFRDET--LTYAQVDRRSNQVARALHDQLGLRQGDCVALFMGNEPAYVWI 120
Query: 583 QLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKA 762
L + G + +N +A L + + G K L+ + ++++ P ++K
Sbjct: 121 WLGLLKLGCPMACLNYNIRAKSLLHCFQCCGAKVLLASPDLQ-----EAVEEVLPTLKKD 175
Query: 763 KPGALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFLSCHDPINI 942
R + VDT L +D V A E +++ T P
Sbjct: 176 AVSVFYVSRTSNTN---GVDTILDK---VDGVSAEPTPESWRSEVTFTT-------PAVY 222
Query: 943 QFTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTM 1122
+TSGTTG PK AT++H+ + G L +S + + PLYH + G
Sbjct: 223 IYTSGTTGLPKAATINHHRL-----WYGTGLAMSSGITAQDVIYTTMPLYHSAALMIGLH 277
Query: 1123 VSLMHGVTLILSS 1161
++ G TL L S
Sbjct: 278 GCIVVGATLALRS 290
>ref|NP_542142.1| acetyl-coenzyme A synthetase 2-like, mitochondrial precursor [Mus
musculus].
Length = 682
Score = 62.8 bits (151), Expect = 6e-10
Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 7/203 (3%)
Frame = +1
Query: 391 CLDATAQKIPDKEALVVFHEN----IRLTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGP 558
CLD QK P+ AL+ + +R+T+ +L E + A L G+ +GDR+ ++ P
Sbjct: 107 CLDQHVQKSPETIALIWERDEPGTEVRITYRELLETTCRLANTLKRHGVHRGDRVAIYMP 166
Query: 559 NSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQ 738
S V LA A+ G I V + A L + CKA++ Q LK+
Sbjct: 167 VSPLAVAAMLACARIGAIHTVVFAGFSAESLAGRINDAKCKAVITFNQGLRGGRVVELKK 226
Query: 739 ICPEVEKAKP---GALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQ 909
I E K+ P L + R + S+D PL + + V T
Sbjct: 227 IVDEAVKSCPTVQHVLVAHRTDTKVPMGSLDIPLEQEMAKEAPVC-------------TP 273
Query: 910 KFLSCHDPINIQFTSGTTGSPKG 978
+ +S D + + +TSG+TG+PKG
Sbjct: 274 ESMSSEDMLFMLYTSGSTGTPKG 296
>ref|NP_848873.1| acyl-coenzyme A synthetase ACSM5, mitochondrial precursor [Mus
musculus].
Length = 578
Score = 59.7 bits (143), Expect = 5e-09
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 1/175 (0%)
Frame = +1
Query: 454 IRLTFAQLKEQVDKAAAGLLSI-GLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNP 630
++ TF +L +Q KAA L + GL+ GDR+ + P W LI +A + G++++
Sbjct: 87 VKWTFEELGKQSRKAANVLEGVCGLQPGDRMMLVLPRLPDWWLISVACMRTGVVMIPGVS 146
Query: 631 AYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIV 810
A +L+Y L+ K++V Q + + CP ++ T +
Sbjct: 147 QLTAKDLKYRLQAARAKSIVTSDALAPQ--VDAISADCPSLQ---------------TKL 189
Query: 811 ISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPK 975
+ DT PG + +++ A + E + + R D + I FTSGTTG+PK
Sbjct: 190 LVSDTSRPGWINFRELLRAASPEHNCVRTR-------SGDSVAIYFTSGTTGAPK 237
>ref|NP_036107.1| long-chain fatty acid transport protein 1 [Mus musculus].
Length = 646
Score = 57.4 bits (137), Expect = 2e-08
Identities = 67/267 (25%), Positives = 110/267 (41%), Gaps = 3/267 (1%)
Frame = +1
Query: 364 RLINKTVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLSIGLRKGDRL 543
R T+ A A++ P++ ALV I TFAQL + A +G GD +
Sbjct: 72 RRAGDTIPCIFQAVARRQPERLALVDASSGICWTFAQLDTYSNAVANLFRQLGFAPGDVV 131
Query: 544 GMWGPNSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYY 723
++ +V + L A+AG++ +N + L + L KAL++ +
Sbjct: 132 AVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRREPLAFCLGTSAAKALIYGGEM-AAAVA 190
Query: 724 NILKQICPEVEKAKPGALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQHLAQLRH 903
+ +Q+ + K G L + + LP T LD ++A LAQ
Sbjct: 191 EVSEQLGKSLLKFCSGDLGPESI------------LPDTQLLDPMLAEA-PTTPLAQAPG 237
Query: 904 TQKFLSCHDPINIQFTSGTTGSPKGATLSH---YNIVNNSNMIGERLQLSQKTAEKSRMV 1074
D + +TSGTTG PK A + H Y I + S + A+
Sbjct: 238 K----GMDDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHH-----SYSMRAADVLYDC 288
Query: 1075 LPTPLYHCLGSVGGTMVSLMHGVTLIL 1155
L PLYH G++ G +++G+T++L
Sbjct: 289 L--PLYHSAGNIMGVGQCVIYGLTVVL 313
>ref|NP_444408.1| long-chain-fatty-acid--CoA ligase ACSBG1 [Mus musculus].
Length = 721
Score = 55.1 bits (131), Expect = 1e-07
Identities = 52/242 (21%), Positives = 91/242 (37%), Gaps = 6/242 (2%)
Frame = +1
Query: 457 RLTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAY 636
R+++ Q K A G L +GL + + + G NS W + T AG I+ +
Sbjct: 129 RISYYQYYLIARKVAKGFLKLGLERAHSVAILGFNSPEWFFSAVGTVFAGGIVTGIYTTS 188
Query: 637 QAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVIS 816
+Y +V Q + ++ I K LP L V+
Sbjct: 189 SPEACQYISHDCRANVIVVDTQKQLEKILKIWKD-----------------LPHLKAVVI 231
Query: 817 VDTPLPGTLF----LDDVVAAGNQ--EQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKG 978
P P + +++++ G + E+ L + TQ+ C + +TSGTTG+PKG
Sbjct: 232 YQEPPPKKMANVYTMEELIELGQEVPEEALDAIIDTQQPNQC---CVLVYTSGTTGNPKG 288
Query: 979 ATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHGVTLILS 1158
LS NI + + + ++ +V PL H + + G + +
Sbjct: 289 VMLSQDNITWTARYGSQAGDIQPAEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFA 348
Query: 1159 SP 1164
P
Sbjct: 349 DP 350
>ref|NP_033538.2| bile acyl-CoA synthetase [Mus musculus].
Length = 689
Score = 50.8 bits (120), Expect = 2e-06
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 1/200 (0%)
Frame = +1
Query: 586 LATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAK 765
L A+ G + +NP + L ++++ G L+ + L+++ P+
Sbjct: 191 LGLAKLGCPVAWINPHSRGMPLLHSVRSSGASVLIVDPDLQEN-----LEEVLPK----- 240
Query: 766 PGALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFLSCHDPINIQ 945
L ++ + + +P PG L + A + A LR T K+ S P
Sbjct: 241 ---LLAENIH--CFYLGHSSPTPGVEALGASLDAAPSDPVPASLRATIKWKS---PAIFI 292
Query: 946 FTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPT-PLYHCLGSVGGTM 1122
FTSGTTG PK A LSH ++ SN+ LS +V PLYH +G V G +
Sbjct: 293 FTSGTTGLPKPAILSHERVIQVSNV------LSFCGCRADDVVYDVLPLYHTIGLVLGFL 346
Query: 1123 VSLMHGVTLILSSPVFDGKK 1182
L G T +L +P F +
Sbjct: 347 GCLQVGATCVL-APKFSASR 365
>ref|NP_032007.2| long-chain-fatty-acid--CoA ligase 1 [Mus musculus].
Length = 699
Score = 48.9 bits (115), Expect = 9e-06
Identities = 50/243 (20%), Positives = 101/243 (41%), Gaps = 13/243 (5%)
Frame = +1
Query: 460 LTFAQLKEQVDKAAAGLLSIGLRKGDR--LGMWGPNSYAWVLIQLATAQAGIILVSVNPA 633
+++ ++ E + +GL+ G + +G++ N WV+++ +++V +
Sbjct: 122 ISYKEVAELAECIGSGLIQKGFKPCSEQFIGLFSQNRPEWVIVEQGCFSYSMVVVPLYDT 181
Query: 634 YQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVI 813
A + Y + K + K PE K ++++ P L I++
Sbjct: 182 LGADAITYIVNKAELSVIFADK---------------PEKAKLLLEGVENKLTPCLKIIV 226
Query: 814 SVDTPLPGTLFLDDVVAAGNQ----------EQHLAQLRHTQ-KFLSCHDPINIQFTSGT 960
+D+ + D+V G + + L ++ + K D I FTSGT
Sbjct: 227 IMDS------YGSDLVERGKKCGVEIISLKALEDLGRVNRVKPKPPEPEDLAIICFTSGT 280
Query: 961 TGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHG 1140
TG+PKGA ++H NI+N+ + + + + + ++ PL H +V V L HG
Sbjct: 281 TGNPKGAMITHQNIINDCSGFIKATESAFIASTDDVLISFLPLAHMFETV-VECVMLCHG 339
Query: 1141 VTL 1149
+
Sbjct: 340 AKI 342
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,812,934
Number of extensions: 1644089
Number of successful extensions: 7981
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7878
Number of HSP's successfully gapped: 11
Length of query: 434
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 330
Effective length of database: 12,493,815
Effective search space: 4122958950
Effective search space used: 4122958950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002233
(1304 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927148.2| PREDICTED: acetyl-coenzyme A synthetase 2-li... 60 2e-09
Alignment gi|XP_003123156.2| PREDICTED: long-chain-fatty-acid--CoA ligase... 59 6e-09
Alignment gi|XP_003353724.1| PREDICTED: LOW QUALITY PROTEIN: long-chain f... 56 4e-08
Alignment gi|NP_001077400.1| long-chain fatty acid transport protein 1 [S... 54 1e-07
Alignment gi|XP_003359417.1| PREDICTED: long-chain-fatty-acid--CoA ligase... 50 2e-06
Alignment gi|NP_001182250.1| long-chain-fatty-acid--CoA ligase 5 [Sus scr... 50 4e-06
Alignment gi|XP_003133388.2| PREDICTED: long-chain-fatty-acid--CoA ligase... 49 5e-06
Alignment gi|NP_001161101.2| long-chain-fatty-acid--CoA ligase 1 [Sus scr... 49 8e-06
>ref|XP_001927148.2| PREDICTED: acetyl-coenzyme A synthetase 2-like, mitochondrial-like
[Sus scrofa].
Length = 672
Score = 60.5 bits (145), Expect = 2e-09
Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 7/203 (3%)
Frame = +1
Query: 391 CLDATAQKIPDKEALVVFHEN----IRLTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGP 558
CLD QK P+ AL+ + +R+T+ +L E + A L G+ +GDR+ ++ P
Sbjct: 98 CLDQHVQKSPESVALIWERDEPGTAVRITYRELLETTCRLANTLKRHGVCRGDRVAIYMP 157
Query: 559 NSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQ 738
S V LA A+ G + + + A L + CK L+ Q LK+
Sbjct: 158 VSPMAVAAMLACARIGAVHTVIFAGFSAGSLAGRINDAKCKVLITFNQGLRGGRVVELKR 217
Query: 739 ICPEVEKAKPG---ALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQ 909
I E K P L + R + + ++D PL + ++ V A
Sbjct: 218 IVDEAVKLCPSIQHVLVAHRTDNKVPMGNLDIPLEQEMAKEEPVCA-------------P 264
Query: 910 KFLSCHDPINIQFTSGTTGSPKG 978
+ + D + + +TSG+TG PKG
Sbjct: 265 ESMGSEDTLFLLYTSGSTGKPKG 287
>ref|XP_003123156.2| PREDICTED: long-chain-fatty-acid--CoA ligase ACSBG2 [Sus scrofa].
Length = 673
Score = 58.9 bits (141), Expect = 6e-09
Identities = 54/242 (22%), Positives = 86/242 (35%), Gaps = 7/242 (2%)
Frame = +1
Query: 460 LTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYAWVLIQLATAQAGIILVSVNPAYQ 639
L F Q E KA ++ +GL +G+ G NS W++ L AG V +
Sbjct: 83 LNFNQYYEACRKAGKAMMKLGLEPFHSVGILGFNSVEWLIAALGAILAGGFCVGIYATNS 142
Query: 640 APELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVISV 819
+Y + L+ + Q+ A+ R+ L +I
Sbjct: 143 TDACQYVITHAKVNILIVENDMQLQKIL----------------AIPKSRMETLKAIIQY 186
Query: 820 DTPLPGT-----LFLDDVVAAGNQ--EQHLAQLRHTQKFLSCHDPINIQFTSGTTGSPKG 978
P+ + DD + G + L Q+ QK C I +TSGT G+PKG
Sbjct: 187 KVPVKESKSNNLYSWDDFMELGRSIPDAQLDQIIRNQKANQC---AVIIYTSGTIGNPKG 243
Query: 979 ATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHGVTLILS 1158
LSH NI + L+ + +V PL H + + + G + +
Sbjct: 244 VMLSHDNITWMAGAAAREYNLAYACERQEVVVSYLPLSHIAAQMMDVWIPMKVGAFIYFA 303
Query: 1159 SP 1164
P
Sbjct: 304 QP 305
>ref|XP_003353724.1| PREDICTED: LOW QUALITY PROTEIN: long-chain fatty acid transport
protein 4 [Sus scrofa].
Length = 647
Score = 56.2 bits (134), Expect = 4e-08
Identities = 60/260 (23%), Positives = 104/260 (40%)
Frame = +1
Query: 376 KTVGWCLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWG 555
+TV AT + PD AL+ + R TF QL + + + GL D +
Sbjct: 78 RTVPILFAATVYRHPDXTALIFEGTDTRWTFRQLDDYSSSVVNFMQARGLTSLDVAALLM 137
Query: 556 PNSYAWVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNILK 735
N +V + L A+ G+ +N + L + L +AL+F + I
Sbjct: 138 ENCNEFVGLWLGMAKLGVEAALINTNLRRDALRHCLTSSRARALIFGSEM-APAVLEIHA 196
Query: 736 QICPEVEKAKPGALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQKF 915
+ P + G + +P GT LD ++ + +HL R + F
Sbjct: 197 SLDPSLSLFCSGPWEPSAVP------------AGTEHLDPLLE--DAPKHLPS-RPNKGF 241
Query: 916 LSCHDPINIQFTSGTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYH 1095
+ D + +TSGTTG PK A + H + ++ ++ + PLYH
Sbjct: 242 V---DKLFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPDDVLYDCL----PLYH 294
Query: 1096 CLGSVGGTMVSLMHGVTLIL 1155
G++ G L+HG+T+++
Sbjct: 295 TAGNIVGVGQCLLHGLTVVI 314
>ref|NP_001077400.1| long-chain fatty acid transport protein 1 [Sus scrofa].
Length = 646
Score = 54.3 bits (129), Expect = 1e-07
Identities = 82/317 (25%), Positives = 126/317 (39%), Gaps = 11/317 (3%)
Frame = +1
Query: 238 GLSRVWQEARLWGVRPLSSGE-----VDHTAPLPIGGLSY-IQGNTKLRLINK---TVGW 390
GL W A GV G V TA + GLS I+ +LR + T+
Sbjct: 21 GLPWTWSTAAALGVYVGGGGWRFLRIVCKTARRDLFGLSVLIRVRLELRRHQRARHTIPQ 80
Query: 391 CLDATAQKIPDKEALVVFHENIRLTFAQLKEQVDKAAAGLLSIGLRKGDRLGMWGPNSYA 570
A A++ P+ ALV TFAQL + A +G GD + ++
Sbjct: 81 IFQAVARQQPEHLALVDAGSGACWTFAQLDAYSNAVANLFRQLGFVPGDVVAIFLEGRPE 140
Query: 571 WVLIQLATAQAGIILVSVNPAYQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPE 750
+V + L A+AG+ +N + L + L G KALVF ++ + Q+
Sbjct: 141 FVGLWLGLAKAGMEAALLNINLRREPLTFCLGTSGAKALVFGEELAV-AVAEVSGQLGKS 199
Query: 751 VEKAKPGALKSQRLPDLTIVISVDTPLPGTLFLDDVVAAGNQEQHLAQLRHTQKFLSCHD 930
+ K G + + L LP T LD ++ +E A L D
Sbjct: 200 LVKFCSGDSRPEGL------------LPDTQLLDPLL----KETSTAPLAQPPG-KGMDD 242
Query: 931 PINIQFTSGTTGSPKGATLSH--YNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLG 1104
+ +TSGTTG PK A + H Y + R+Q + + PLYH G
Sbjct: 243 RLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHHSYRMQATDVIYD------CLPLYHSAG 296
Query: 1105 SVGGTMVSLMHGVTLIL 1155
++ G L++G+T++L
Sbjct: 297 NIVGVGQCLIYGLTVVL 313
>ref|XP_003359417.1| PREDICTED: long-chain-fatty-acid--CoA ligase 5-like [Sus scrofa].
Length = 683
Score = 50.4 bits (119), Expect = 2e-06
Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 15/227 (6%)
Frame = +1
Query: 460 LTFAQLKEQVDKAAAGLLSIGLRKG--DRLGMWGPNSYAWVLIQLATAQAGIILVSVNPA 633
L++ Q+ ++ + + LL G + + +G++ N W++ + A ++ V +
Sbjct: 106 LSYKQVSDRAEYLGSFLLHKGYKPSPDELIGIFAQNRPEWIISEYACYTYSMVAVPLYET 165
Query: 634 YQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQR--LPDLTI 807
A ++Y + K I IC + EKA ++ +P L +
Sbjct: 166 LGAEAIKYIINKA-----------------EIATVICDKPEKALILIKDMEKGLIPSLKM 208
Query: 808 VISVDTPLPGTLFLDDVVAAGNQEQ-HLAQLRHTQKF----------LSCHDPINIQFTS 954
+I +D F DD+ G + + + L + S D + FTS
Sbjct: 209 IIIMDP------FEDDLKERGEKSRIEILSLLDAENIGKENFRKPVPPSPEDLSIVCFTS 262
Query: 955 GTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYH 1095
GTTG PKGA ++H NIV+N +RL+ + + + + PL H
Sbjct: 263 GTTGDPKGAMITHQNIVSNVASFLKRLEYTFQPTPEDVSISYLPLAH 309
>ref|NP_001182250.1| long-chain-fatty-acid--CoA ligase 5 [Sus scrofa].
Length = 683
Score = 49.7 bits (117), Expect = 4e-06
Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 15/227 (6%)
Frame = +1
Query: 460 LTFAQLKEQVDKAAAGLLSIGLRKG--DRLGMWGPNSYAWVLIQLATAQAGIILVSVNPA 633
L++ Q+ ++ + + LL G + + +G++ N W++ + A ++ V +
Sbjct: 106 LSYKQVSDRAEYLGSFLLHKGYKPSPDELIGIFAQNRPEWIISEYACYTYSMVAVPLYET 165
Query: 634 YQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQR--LPDLTI 807
A ++Y + K I IC + EKA ++ +P L +
Sbjct: 166 LGAEAIKYIINKA-----------------EIATVICDKPEKALILIKDMEKGLIPSLKM 208
Query: 808 VISVDTPLPGTLFLDDVVAAGNQE----------QHLAQLRHTQKFLSCHDPINIQ-FTS 954
+I +D F DD+ G + +++ + + + ++I FTS
Sbjct: 209 IIIMDP------FEDDLKERGEKSGIEILSLLDAENIGKENFRKPVPPSPEDLSIVCFTS 262
Query: 955 GTTGSPKGATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYH 1095
GTTG PKGA ++H NIV+N +RL+ + + + + PL H
Sbjct: 263 GTTGDPKGAMITHQNIVSNVASFLKRLEYTFQPTPEDVSISYLPLAH 309
>ref|XP_003133388.2| PREDICTED: long-chain-fatty-acid--CoA ligase 1-like [Sus scrofa].
Length = 491
Score = 49.3 bits (116), Expect = 5e-06
Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 9/239 (3%)
Frame = +1
Query: 460 LTFAQLKEQVDKAAAGLLSIGLRKGDR--LGMWGPNSYAWVLIQLATAQAGIILVSVNPA 633
L++ Q+++ + + L+ G + G +G++ N WV+I+ +++V +
Sbjct: 122 LSYKQVEDMSECVGSALIHKGFKAGPENFVGIFAQNRPEWVIIEQGCFAYSMVVVPLYDT 181
Query: 634 YQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVI 813
+ Y + K G +LVF + PE ++++ +P L +I
Sbjct: 182 LGTEAITYIINK-GELSLVFVDK--------------PEKANLLLEGVENKLIPGLKTII 226
Query: 814 SVDTPLPGTLFLDDVVAAGNQEQHLAQL-------RHTQKFLSCHDPINIQFTSGTTGSP 972
+D+ G L+ G + + L R K + D I FTSGTTG+P
Sbjct: 227 LMDSY--GIDLLERGKKCGVEIMSMKALEDLGRANRRKPKPPAPEDLAVICFTSGTTGNP 284
Query: 973 KGATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHGVTL 1149
KGA ++H N+V++ + + + + + ++ PL H V V L HG +
Sbjct: 285 KGAMITHRNVVSDCSAFVKVTEKTFSPSSDDTLISFLPLAHMFERV-VECVMLCHGAKI 342
>ref|NP_001161101.2| long-chain-fatty-acid--CoA ligase 1 [Sus scrofa].
Length = 699
Score = 48.5 bits (114), Expect = 8e-06
Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 9/239 (3%)
Frame = +1
Query: 460 LTFAQLKEQVDKAAAGLLSIGLRKGDR--LGMWGPNSYAWVLIQLATAQAGIILVSVNPA 633
L++ Q+++ + + L+ G + G +G++ N WV+I+ +++V +
Sbjct: 122 LSYKQVEDMSECVGSALIHKGFKAGPENFVGIFAQNRPEWVIIEQGCFAYSMVVVPLYDT 181
Query: 634 YQAPELEYALKKVGCKALVFPKQFKTQQYYNILKQICPEVEKAKPGALKSQRLPDLTIVI 813
+ Y + K G +LVF + PE ++++ +P L +I
Sbjct: 182 LGTEAITYIINK-GELSLVFVDK--------------PEKANLLLEGVENKLIPGLKTII 226
Query: 814 SVDTPLPGTLFLDDVVAAGNQEQHLAQL-------RHTQKFLSCHDPINIQFTSGTTGSP 972
+D+ G L+ G + + L R K + D I FTSGTTG+P
Sbjct: 227 LMDSY--GIDLLERGKKCGVEIMSMKALEDLGRANRRKPKPPAPEDLAVICFTSGTTGNP 284
Query: 973 KGATLSHYNIVNNSNMIGERLQLSQKTAEKSRMVLPTPLYHCLGSVGGTMVSLMHGVTL 1149
KGA ++H N+V++ + + + + ++ PL H V V L HG +
Sbjct: 285 KGAMITHRNVVSDCSAFVKVTDKTFSPSSDDTLISFLPLAHMFERV-VECVMLCHGAKI 342
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,763,422
Number of extensions: 1332645
Number of successful extensions: 6779
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6705
Number of HSP's successfully gapped: 8
Length of query: 434
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 332
Effective length of database: 8,804,438
Effective search space: 2923073416
Effective search space used: 2923073416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002233
(1304 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 466 e-128
>Sscrofa_Chr12
|| Length = 63588571
Score = 466 bits (235), Expect = e-128
Identities = 238/239 (99%)
Strand = Plus / Plus
Query: 52 aacttctccgcaacccataggcagaggcgaccctcccgcctccccgcgcttcgccccgcc 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26802521 aacttctccgcaacccataggcagaggcgaccctcccgcctccccgcgcttcgccccgcc 26802580
Query: 112 tcggcgcgctttaaaagtttactccgggccgggacgctgacgtcgcgagccatggccgtc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26802581 tcggcgcgctttaaaagtttactccgggccgggacgctgacgtcgcgagccatggccgtc 26802640
Query: 172 tacctcgggatgctgcgcgtcgtgaggctgtgcgccgggaggccggaggtgctgggggcc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26802641 tacctcgggatgctgcgcgtcgtgaggctgtgcgccgggaggccggaggtgctgggggcc 26802700
Query: 232 gggggcggcctctcccgggtttggcaggaagcgaggctgtggggcgtccgtcccctcag 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26802701 cggggcggcctctcccgggtttggcaggaagcgaggctgtggggcgtccgtcccctcag 26802759
Score = 406 bits (205), Expect = e-110
Identities = 208/209 (99%)
Strand = Plus / Plus
Query: 282 tcccctcagttctggagaggtggatcacaccgcccccctgcccatcggaggcctcagcta 341
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26826631 tccccacagttctggagaggtggatcacaccgcccccctgcccatcggaggcctcagcta 26826690
Query: 342 catccagggcaacaccaaattgcgccttattaacaagactgtggggtggtgcctggatgc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26826691 catccagggcaacaccaaattgcgccttattaacaagactgtggggtggtgcctggatgc 26826750
Query: 402 cacagcacagaagatcccggacaaagaggccttggttgtcttccacgaaaacataaggtt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26826751 cacagcacagaagatcccggacaaagaggccttggttgtcttccacgaaaacataaggtt 26826810
Query: 462 gacctttgcccagctcaaggagcaggtgg 490
|||||||||||||||||||||||||||||
Sbjct: 26826811 gacctttgcccagctcaaggagcaggtgg 26826839
Score = 327 bits (165), Expect = 9e-87
Identities = 168/169 (99%)
Strand = Plus / Plus
Query: 787 aggctcccggacctgaccatcgtcatctcagtggacacccctctgccagggaccctgttt 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 26828498 aggctcccggacctgaccatcgtcatctcagtggacacccctctgccagggaccctgctt 26828557
Query: 847 ctggatgacgtggtggcagctggcaatcaagagcagcatctggctcagctccggcacacg 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26828558 ctggatgacgtggtggcagctggcaatcaagagcagcatctggctcagctccggcacacg 26828617
Query: 907 cagaagttcctgtcctgccatgaccccatcaacatccagttcacctcgg 955
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26828618 cagaagttcctgtcctgccatgaccccatcaacatccagttcacctcgg 26828666
Score = 301 bits (152), Expect = 5e-79
Identities = 158/160 (98%)
Strand = Plus / Plus
Query: 1049 agacggcagagaagtcaaggatggtcctgcccacccccctgtaccactgcctgggttccg 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26829424 agacggcagagaagtcaaggatggtcctgcccacccccctgtaccactgcctgggttccg 26829483
Query: 1109 tggggggcacaatggtgagcttgatgcatggggtcaccctcatcctgtcctctccggtct 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26829484 tggggggcacaatggtgagcttgatgcatggggtcaccctcatcctgtcctctccggtct 26829543
Query: 1169 tcgatggcaagaaggcgctggaagccattaacagagagag 1208
|||||||||||||||||||||| ||||||| |||||||||
Sbjct: 26829544 tcgatggcaagaaggcgctggaggccattagcagagagag 26829583
Score = 268 bits (135), Expect = 7e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 484 caggtggacaaagctgctgctgggctcttgagtatcggcctccgcaagggtgaccggctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26827475 caggtggacaaagctgctgctgggctcttgagtatcggcctccgcaagggtgaccggctg 26827534
Query: 544 ggcatgtggggacccaactcctatgcatgggtactcattcagctggccacagcccaggca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26827535 ggcatgtggggacccaactcctatgcatgggtactcattcagctggccacagcccaggca 26827594
Query: 604 ggcatcattctggtg 618
|||||||||||||||
Sbjct: 26827595 ggcatcattctggtg 26827609
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 668 aggtgggctgcaaagccctcgtgttccccaagcaattcaagacccagcagtactacaaca 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26828248 aggtgggctgcaaagccctcgtgttccccaagcaattcaagacccagcagtactacaaca 26828307
Query: 728 tcctgaagcagatctgtccagaggtggagaaggccaagccaggggccttgaagagccaga 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26828308 tcctgaagcagatctgtccagaggtggagaaggccaagccaggggccttgaagagccaga 26828367
Query: 788 gg 789
||
Sbjct: 26828368 gg 26828369
Score = 184 bits (93), Expect = 8e-44
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 954 ggggacaaccggcagtcccaagggggccacgctctcccactacaacatcgtcaacaactc 1013
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 26829186 ggggacaaccggcagtcccaagggggccacgctctcccactacaacatcgtaaacaactc 26829245
Query: 1014 caacatgataggggagcgcctgcaactgtcacagaag 1050
|||||||||||||||||||||||||||||||||||||
Sbjct: 26829246 caacatgataggggagcgcctgcaactgtcacagaag 26829282
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 615 ggtgtccgtgaacccagcctaccaggctccagagctggagtatgccctcaagaaggt 671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26827851 ggtgtccgtgaacccagcctaccaggctccagagctggagtatgccctcaagaaggt 26827907
Score = 89.7 bits (45), Expect = 4e-15
Identities = 70/77 (90%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1218 ctgtatggcacccctaccatgttcgtggacatcttgacccaccgggacttc-ccagttac 1276
|||||||||||||||||||||||||||||||| ||| ||| | ||||||| ||||||||
Sbjct: 26829885 ctgtatggcacccctaccatgttcgtggacattctgaaccaaccggacttctccagttac 26829944
Query: 1277 gacatctcagccctttg 1293
|||||||||||| ||||
Sbjct: 26829945 gacatctcagccatttg 26829961
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,234,665
Number of extensions: 209
Number of successful extensions: 209
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 10
Length of query: 1304
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1283
Effective length of database: 2,808,413,156
Effective search space: 3603194079148
Effective search space used: 3603194079148
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)