Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002236
(1695 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014891.1| PRA1 family protein 3 [Bos taurus]. 336 3e-92
Alignment gi|NP_001039474.1| PRA1 family protein 2 [Bos taurus]. 141 2e-33
>ref|NP_001014891.1| PRA1 family protein 3 [Bos taurus].
Length = 188
Score = 336 bits (862), Expect = 3e-92
Identities = 168/188 (89%), Positives = 174/188 (92%)
Frame = +2
Query: 257 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 436
MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF
Sbjct: 1 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 60
Query: 437 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVM 616
LSPFNMILGGIVVVLVFTGFVWAAHNKDILRR+KKQYPT FVMVVMLASYFLIS+FGGVM
Sbjct: 61 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRMKKQYPTAFVMVVMLASYFLISLFGGVM 120
Query: 617 VFVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEENISKFA 796
VFVFGITFPLLLMFIHAS ENK+E IGLKRTPMGIVLDALEQQEE I+KF+
Sbjct: 121 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEEIGLKRTPMGIVLDALEQQEETITKFS 180
Query: 797 DYISKVNE 820
DYISK+ E
Sbjct: 181 DYISKMKE 188
>ref|NP_001039474.1| PRA1 family protein 2 [Bos taurus].
Length = 178
Score = 141 bits (355), Expect = 2e-33
Identities = 69/173 (39%), Positives = 105/173 (60%)
Frame = +2
Query: 260 DVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGFL 439
+V + PLRA DDF GS R PD D +W +RV++NLLYYQTNYL+ + +++ G++
Sbjct: 3 EVRLPPLRALDDFVLGSARLVAPDPCDPQRWCHRVINNLLYYQTNYLICFGLGLALAGYV 62
Query: 440 SPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVMV 619
P + +L +VV + V AA N+ +RR ++ +P + V+ + ++ GG
Sbjct: 63 RPLHTLLSALVVAVALGMLVCAAENRAAVRRCRRSHPAACLAAVLAVGFLVLWAAGGAGT 122
Query: 620 FVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEE 778
F+ I P+LL+ +HAS ENKIE IGLKRTPMG++L+AL Q++E
Sbjct: 123 FLLSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQE 175
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,989,157
Number of extensions: 1504845
Number of successful extensions: 4186
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4152
Number of HSP's successfully gapped: 2
Length of query: 565
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 457
Effective length of database: 14,107,870
Effective search space: 6447296590
Effective search space used: 6447296590
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002236
(1695 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533764.2| PREDICTED: similar to ADP-ribosylation factor-l... 342 6e-94
Alignment gi|XP_538032.1| PREDICTED: similar to PRA1 family protein 2 (JM... 143 6e-34
Alignment gi|XP_848613.1| PREDICTED: similar to ADP-ribosylation factor-l... 108 2e-23
>ref|XP_533764.2| PREDICTED: similar to ADP-ribosylation factor-like 6 interacting
protein 5 [Canis familiaris].
Length = 188
Score = 342 bits (877), Expect = 6e-94
Identities = 171/188 (90%), Positives = 174/188 (92%)
Frame = +2
Query: 257 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 436
MDVN APLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF
Sbjct: 1 MDVNFAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 60
Query: 437 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVM 616
LSPFNMILGGIVVVLVFTGFVWAAHNKDILRR+KKQYPT FVMVVMLASYFLISMFGGVM
Sbjct: 61 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRMKKQYPTTFVMVVMLASYFLISMFGGVM 120
Query: 617 VFVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEENISKFA 796
VFVFGITFPLLLMFIHAS ENK+EGIGLKRTPMGIVLDALEQQEE +SKFA
Sbjct: 121 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEETVSKFA 180
Query: 797 DYISKVNE 820
DYISKV E
Sbjct: 181 DYISKVKE 188
>ref|XP_538032.1| PREDICTED: similar to PRA1 family protein 2 (JM4 protein) [Canis
familiaris].
Length = 178
Score = 143 bits (360), Expect = 6e-34
Identities = 70/173 (40%), Positives = 104/173 (60%)
Frame = +2
Query: 260 DVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGFL 439
+V + PLRA DDF GS R A PD D +W +RV++NLLYYQTNYL+ +++ G++
Sbjct: 3 EVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLLCFLFSLALAGYM 62
Query: 440 SPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVMV 619
P + +L +VV + VWAA + +RR ++ +P + V+ ++ GG
Sbjct: 63 RPLHTLLSALVVTVALGVLVWAAETQAAVRRCRRSHPAACLAAVLAFGLLVLWAVGGACT 122
Query: 620 FVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEE 778
F+ I P+LL+ +HAS ENKIE IGLKRTPMG++L+AL Q++E
Sbjct: 123 FLLSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQE 175
>ref|XP_848613.1| PREDICTED: similar to ADP-ribosylation factor-like 6 interacting
protein 5 [Canis familiaris].
Length = 140
Score = 108 bits (270), Expect = 2e-23
Identities = 60/99 (60%), Positives = 68/99 (68%), Gaps = 2/99 (2%)
Frame = +2
Query: 530 RLKKQYPTVFVMVVMLASYF--LISMFGGVMVFVFGITFPLLLMFIHASXXXXXXXXXXE 703
R ++ +PT V+V Y LIS+F GV VFVFGIT PLLLM IH S E
Sbjct: 42 RAEQPHPTARVLVPGRVGYSCRLISVFAGVAVFVFGITLPLLLMLIHGSLRLRNLQNELE 101
Query: 704 NKIEGIGLKRTPMGIVLDALEQQEENISKFADYISKVNE 820
NK+EGIG KRTPMGIVLDA EQQEE +SKFADYISKV +
Sbjct: 102 NKMEGIGSKRTPMGIVLDAPEQQEETVSKFADYISKVKK 140
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,508,134
Number of extensions: 1544955
Number of successful extensions: 4368
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4334
Number of HSP's successfully gapped: 3
Length of query: 565
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 457
Effective length of database: 15,274,216
Effective search space: 6980316712
Effective search space used: 6980316712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002236
(1695 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006398.1| PRA1 family protein 3 [Homo sapiens]. 335 6e-92
Alignment gi|NP_009144.1| PRA1 family protein 2 [Homo sapiens]. 146 5e-35
>ref|NP_006398.1| PRA1 family protein 3 [Homo sapiens].
Length = 188
Score = 335 bits (860), Expect = 6e-92
Identities = 166/188 (88%), Positives = 173/188 (92%)
Frame = +2
Query: 257 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 436
MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMIS+VGF
Sbjct: 1 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGF 60
Query: 437 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVM 616
LSPFNMILGGIVVVLVFTGFVWAAHNKD+LRR+KK+YPT FVMVVMLASYFLISMFGGVM
Sbjct: 61 LSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVM 120
Query: 617 VFVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEENISKFA 796
VFVFGITFPLLLMFIHAS ENK+EGIGLKRTPMGIVLDALEQQEE I++
Sbjct: 121 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRLT 180
Query: 797 DYISKVNE 820
DYISKV E
Sbjct: 181 DYISKVKE 188
>ref|NP_009144.1| PRA1 family protein 2 [Homo sapiens].
Length = 178
Score = 146 bits (369), Expect = 5e-35
Identities = 71/173 (41%), Positives = 107/173 (61%)
Frame = +2
Query: 260 DVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGFL 439
+V + PLRA DDF GS R A PD D +W +RV++NLLYYQTNYL+ + +++ G++
Sbjct: 3 EVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLLCFGIGLALAGYV 62
Query: 440 SPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVMV 619
P + +L +VV + VWAA + +RR ++ +P + V+ ++ + GG
Sbjct: 63 RPLHTLLSALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVLWVAGGACT 122
Query: 620 FVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEE 778
F+F I P+LL+ +HAS ENKIE IGLKRTPMG++L+AL Q++E
Sbjct: 123 FLFSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQE 175
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,415,074
Number of extensions: 1526821
Number of successful extensions: 4300
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4249
Number of HSP's successfully gapped: 2
Length of query: 565
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 457
Effective length of database: 14,737,052
Effective search space: 6734832764
Effective search space used: 6734832764
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002236
(1695 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075368.1| PRA1 family protein 3 [Mus musculus]. 335 8e-92
Alignment gi|NP_613068.1| PRA1 family protein 2 [Mus musculus]. 151 1e-36
>ref|NP_075368.1| PRA1 family protein 3 [Mus musculus].
Length = 188
Score = 335 bits (858), Expect = 8e-92
Identities = 164/188 (87%), Positives = 173/188 (92%)
Frame = +2
Query: 257 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 436
MDVN+APLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF
Sbjct: 1 MDVNLAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 60
Query: 437 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVM 616
LSPFNMILGG++VVLVF GFVWAAHNKDILRR+KKQYPT FVMVVMLASYFLISMFGGVM
Sbjct: 61 LSPFNMILGGVIVVLVFMGFVWAAHNKDILRRMKKQYPTAFVMVVMLASYFLISMFGGVM 120
Query: 617 VFVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEENISKFA 796
VFVFGIT PLLLMFIHAS ENK+EGIGLK+TPMGI+LDALEQQE+NI+KFA
Sbjct: 121 VFVFGITLPLLLMFIHASLRLRNLKNKLENKMEGIGLKKTPMGIILDALEQQEDNINKFA 180
Query: 797 DYISKVNE 820
DYISK E
Sbjct: 181 DYISKARE 188
>ref|NP_613068.1| PRA1 family protein 2 [Mus musculus].
Length = 178
Score = 151 bits (382), Expect = 1e-36
Identities = 73/173 (42%), Positives = 108/173 (62%)
Frame = +2
Query: 260 DVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGFL 439
+V + PLRA DDF GS R A PD D +W +RV++NLLYYQTNYL+ + +++ G++
Sbjct: 3 EVRLPPLRALDDFVLGSARLAAPDPGDPQRWCHRVINNLLYYQTNYLLCFGISLALAGYI 62
Query: 440 SPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVMV 619
P + +L +VVV+ VWAA + +RR ++ +P + V+ S F++ GG
Sbjct: 63 RPLHTLLSALVVVVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAISLFILWAVGGAFT 122
Query: 620 FVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEE 778
F+ IT P+ L+ +HAS ENKIE IGLKRTPMG++L+AL Q++E
Sbjct: 123 FLLSITAPVFLILLHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQE 175
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,481,107
Number of extensions: 1302907
Number of successful extensions: 3787
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3711
Number of HSP's successfully gapped: 2
Length of query: 565
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 458
Effective length of database: 12,403,707
Effective search space: 5680897806
Effective search space used: 5680897806
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002236
(1695 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041538.1| PRA1 family protein 3 [Sus scrofa]. 352 4e-97
Alignment gi|NP_001230809.1| PRA1 domain family, member 2 [Sus scrofa]. 147 2e-35
>ref|NP_001041538.1| PRA1 family protein 3 [Sus scrofa].
Length = 188
Score = 352 bits (903), Expect = 4e-97
Identities = 178/188 (94%), Positives = 178/188 (94%)
Frame = +2
Query: 257 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 436
MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF
Sbjct: 1 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF 60
Query: 437 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVM 616
LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVM
Sbjct: 61 LSPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVM 120
Query: 617 VFVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEENISKFA 796
VFVFGITFPLLLMFIHAS ENKIEGIGLKRTPMGIVLDALEQQEENISKFA
Sbjct: 121 VFVFGITFPLLLMFIHASLRLRNLKNKLENKIEGIGLKRTPMGIVLDALEQQEENISKFA 180
Query: 797 DYISKVNE 820
DYISKVNE
Sbjct: 181 DYISKVNE 188
>ref|NP_001230809.1| PRA1 domain family, member 2 [Sus scrofa].
Length = 178
Score = 147 bits (371), Expect = 2e-35
Identities = 72/173 (41%), Positives = 107/173 (61%)
Frame = +2
Query: 260 DVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGFL 439
+V + PLRA DDF GS R A PD D +W +RV++NLLYYQTNYLV + +++ G++
Sbjct: 3 EVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLVCFGLGLALAGYV 62
Query: 440 SPFNMILGGIVVVLVFTGFVWAAHNKDILRRLKKQYPTVFVMVVMLASYFLISMFGGVMV 619
P + +L +VV + VWAA + +RR ++ +P ++ V+ S ++ GG
Sbjct: 63 RPLHTLLSALVVAVALGMLVWAAETRAAVRRCRRSHPAACLIAVLAVSLLVLWAAGGACT 122
Query: 620 FVFGITFPLLLMFIHASXXXXXXXXXXENKIEGIGLKRTPMGIVLDALEQQEE 778
F+ I P+LL+ +HAS ENKIE IGLKRTPMG++L+AL Q++E
Sbjct: 123 FLLSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQE 175
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,561,871
Number of extensions: 959945
Number of successful extensions: 2559
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2531
Number of HSP's successfully gapped: 2
Length of query: 565
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 461
Effective length of database: 8,754,644
Effective search space: 4035890884
Effective search space used: 4035890884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002236
(1695 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1643 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 1643 bits (829), Expect = 0.0
Identities = 898/921 (97%), Gaps = 4/921 (0%)
Strand = Plus / Plus
Query: 651 tgatgtttatccacgcgtcgctgagactccggaacctcaagaacaaactggagaataaaa 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55667886 tgatgtttatccacgcgtcgctgagactccggaacctcaagaacaaactggagaataaaa 55667945
Query: 711 tagagggaatcggtctgaagaggacacccatgggcattgtcctggatgccctagaacagc 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55667946 tagagggaatcggtctgaagaggacacccatgggcattgtcctggatgccctagaacagc 55668005
Query: 771 aggaagaaaacatcagcaagttcgctgactatatcagtaaagtcaatgagtaaatggagc 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668006 aggaagaaaacatcagcaagttcgctgactatatcagtaaagtcaatgagtaaatggagc 55668065
Query: 831 tgacctggcgatagggttgctgcagaaatcgacgtgcagtgtgcccttgtccagacctat 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668066 tgacctggcgatagggttgctgcagaaatcgacgtgcagtgtgcccttgtccagacctat 55668125
Query: 891 tttccgtttgtgtttctgacgtaggaggttcctgcaccatccaaccatccgtggcagcgt 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668126 tttccgtttgtgtttctgacgtaggaggttcctgcaccatccaaccatccgtggcagcgt 55668185
Query: 951 gcacgtagtggccatgctgttcacatctctgcttttacagagagcaggcctcagagactg 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668186 gcacgtagtggccatgctgttcacatctctgcttttacagagagcaggcctcagagactg 55668245
Query: 1011 aaaaaaccaccctcctattgtgtctgaagtttcaggtgtgtttatggaagctgataggaa 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668246 aaaaaaccaccctcctattgtgtctgaagtttcaggtgtgtttatggaagctgataggaa 55668305
Query: 1071 atggagcacacctannnnnnnnaaggggaatacaaataaaagaatcatggattgtatagc 1130
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 55668306 atggagcacacctattttttttaaggggaatacaaataaaagaatcatggattgtatagc 55668365
Query: 1131 aacaatacagtgatcttgtgggaaaaaattcaattgtaaaatattgaggcagtatgagta 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668366 aacaatacagtgatcttgtgggaaaaaattcaattgtaaaatattgaggcagtatgagta 55668425
Query: 1191 aatgaaaagactgttaaagtagatgatgtcatgcactagcctgttttaatctg-nnnnnn 1249
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668426 aatgaaaagactgttaaagtagatgatgtcatgcactagcctgttttaatctgccccccc 55668485
Query: 1250 nnatcctcctcctcc-aaaaatttccttgttagaattataatgtgtagggtatatattag 1308
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55668486 ccatcctcctcctccaaaaaatttccttgttagaattataatgtgtagggtatatattag 55668545
Query: 1309 ttttgtttttattattacgcttttaaaatcaaagatgatctccatcactttgcctcctgt 1368
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 55668546 ttttgtttttattattacgcttttaagatcaaagatgatctccatcactttgcctcctgt 55668605
Query: 1369 ttgatgtgcagtggaagttggataaatcaatttctagtttgtttacaaagctagctgttt 1428
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 55668606 ttgatgtgcagtggaagttggataaatcagtttctagtttgtttacaaagctagctgttt 55668665
Query: 1429 gtgagaatattttgtcaactttttgtccgtttttgaaaggctagtaatgtatttgcacta 1488
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 55668666 gtgagaatattttgtcaactttttgtccgtttttgaaaggctagtaatgtgtttgcacta 55668725
Query: 1489 gcaggcatttgttgcagactaaatgccatcttctttaaggaggttacagnttctgt-acc 1547
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 55668726 gcaggcatttgttgcagactaaatgccatcttctttaaggaggttacag-ttctgtaacc 55668784
Query: 1548 tgtattattctcaatggtctt 1568
|||||||||||||||||||||
Sbjct: 55668785 tgtattattctcaatggtctt 55668805
Score = 759 bits (383), Expect = 0.0
Identities = 423/435 (97%), Gaps = 1/435 (0%)
Strand = Plus / Plus
Query: 1 gtcctttc-tctctgttttgcacttggtctttctctgggcctcagcccttttagagccaa 59
|||||||| |||||||||||||||||||||||||||||||||||| | | | ||||
Sbjct: 55590335 gtcctttcatctctgttttgcacttggtctttctctgggcctcagttttcctgtaaccaa 55590394
Query: 60 cctcttagagccaatcaagaagtaaagaccataagaaacgcccgcccgctctcacttttc 119
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 55590395 cctcttagagccaatcaagaagtaaagaagagaagaaacgcccgcccgctctcacttttc 55590454
Query: 120 ttccttccactgcctactaaccacaaagccgactgcgccagggccgctgtcatctttcac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55590455 ttccttccactgcctactaaccacaaagccgactgcgccagggccgctgtcatctttcac 55590514
Query: 180 ctagctcagctgatcggttgccgccgccgccgctgccagattccagaagcaaagaaccac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55590515 ctagctcagctgatcggttgccgccgccgccgctgccagattccagaagcaaagaaccac 55590574
Query: 240 aagctggtaagatagacatggacgtgaatatcgctccgctccgcgcctgggacgatttct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55590575 aagctggtaagatagacatggacgtgaatatcgctccgctccgcgcctgggacgatttct 55590634
Query: 300 tcccgggctctgatcgcttcgcccggccagactttagggacatttccaaatggaacaacc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55590635 tcccgggctctgatcgcttcgcccggccagactttagggacatttccaaatggaacaacc 55590694
Query: 360 gcgtggtgagcaacctgctctattatcagaccaactatctggtggtggctgccatgatga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55590695 gcgtggtgagcaacctgctctattatcagaccaactatctggtggtggctgccatgatga 55590754
Query: 420 tttccgtcgtggggt 434
|||||||||||||||
Sbjct: 55590755 tttccgtcgtggggt 55590769
Score = 434 bits (219), Expect = e-119
Identities = 219/219 (100%)
Strand = Plus / Plus
Query: 432 ggttcctgagccccttcaacatgatccttggaggcattgtggtggtactggtattcacgg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55664791 ggttcctgagccccttcaacatgatccttggaggcattgtggtggtactggtattcacgg 55664850
Query: 492 gctttgtgtgggcagcccacaataaagacattctccgccggctgaagaagcagtacccta 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55664851 gctttgtgtgggcagcccacaataaagacattctccgccggctgaagaagcagtacccta 55664910
Query: 552 cggtgtttgtcatggtggtcatgctggccagctacttcctcatatccatgtttgggggag 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55664911 cggtgtttgtcatggtggtcatgctggccagctacttcctcatatccatgtttgggggag 55664970
Query: 612 tcatggtctttgtgttcggcatcactttccctttgctgc 650
|||||||||||||||||||||||||||||||||||||||
Sbjct: 55664971 tcatggtctttgtgttcggcatcactttccctttgctgc 55665009
Score = 422 bits (213), Expect = e-115
Identities = 426/501 (85%), Gaps = 22/501 (4%)
Strand = Plus / Plus
Query: 248 aagatagacatggacgtgaatatcgctccgctccgcgcctgggacgatttcttcccgggc 307
|||||||||||||| ||||| | | ||| ||| ||||||||||| ||||||||||| |||
Sbjct: 194286473 aagatagacatggatgtgaacaccactctgctgcgcgcctgggaggatttcttcccaggc 194286532
Query: 308 tctgatcgcttcgcccggccagactttagggacatttccaaatggaacaaccgcgtggtg 367
||||| ||||| ||||| | ||| |||||||||||||||||||||||||| | |||||
Sbjct: 194286533 tctgactgcttcacccggtcggaccttagggacatttccaaatggaacaacttcatggtg 194286592
Query: 368 agcaacctgctctattatcagaccaactatctggtggtggctgccatgatgatttccgtc 427
||||||| ||| ||||| || |||||| |||||||||||||| ||||||||||| |||
Sbjct: 194286593 agcaacccgctgtatta---gagcaactacctggtggtggctgctatgatgatttctgtc 194286649
Query: 428 gtggggttcctgagccccttcaacatgatccttggaggcattgtggtggtactggtattc 487
||||||||| |||||| ||||||| ||||| ||||||||| ||||||| ||||
Sbjct: 194286650 atggggttccggagccctttcaacacgatccgtggaggcatcgtggtggggctgg----- 194286704
Query: 488 acgggctttgtgtgggcagcccacaataaagacattctccgccggctgaagaagcagtac 547
|||||||||||||||||||||||| ||| | | ||||||||| ||
Sbjct: 194286705 --------------ggcagcccacaataaagacattctttgccagataaagaagcaggac 194286750
Query: 548 cctacggtgtttgtcatggtggtcatgctggccagctacttcctcatatccatgtttggg 607
|| |||||||||| | ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 194286751 cccacggtgtttgacgtggtggtcatgctggccagctacttcctcatatacgtgtttggg 194286810
Query: 608 ggagtcatggtctttgtgttcggcatcactttccctttgctgctgatgtttatccacgcg 667
||||||| |||||||| |||| ||||||||||||||||||||||| |||||||||||| |
Sbjct: 194286811 ggagtcacggtctttgcgttcagcatcactttccctttgctgctgctgtttatccacgtg 194286870
Query: 668 tcgctgagactccggaacctcaagaacaaactggagaataaaatagagggaatcggtctg 727
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 194286871 tcgctgagactctggaacctcaagaacaaactggagaataaaatggagggaatcggtatg 194286930
Query: 728 aagaggacacccatgggcatt 748
| ||||| ||||||||||||
Sbjct: 194286931 aggaggatgcccatgggcatt 194286951
Score = 180 bits (91), Expect = 2e-42
Identities = 135/147 (91%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 1415 aaagctagctgtttgtgagaatattttgtcaactttttgtccgtttttgaaaggctagta 1474
|||||||||| ||||| | |||||||||||||||||||||| || ||| ||||||| |||
Sbjct: 194286968 aaagctagctatttgttacaatattttgtcaactttttgtcagtctttaaaaggctggta 194287027
Query: 1475 atgtatttgcactagcaggcatttgttgcagactaaatgccatcttctttaaggaggtta 1534
|||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 194287028 atgtgtttgtactagcaggcatttgttgcaaactaaatgccatcttctttaaggaggtta 194287087
Query: 1535 cagnttctgt-acctgtattattctca 1560
||| |||||| ||||||||||||||||
Sbjct: 194287088 cag-ttctgtaacctgtattattctca 194287113
Score = 67.9 bits (34), Expect = 2e-08
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 1602 cttgagttctgtttctgttgcacagtttttcctggtctaagg 1643
||||||||||||||||||||||||||||||| || |||||||
Sbjct: 55668841 cttgagttctgtttctgttgcacagtttttcttgttctaagg 55668882
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 55,344,365
Number of extensions: 634
Number of successful extensions: 634
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 631
Number of HSP's successfully gapped: 10
Length of query: 1695
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1673
Effective length of database: 2,808,408,574
Effective search space: 4698467544302
Effective search space used: 4698467544302
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)