Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002238
(1328 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029575.1| transmembrane protein 97 [Bos taurus]. 248 7e-66
>ref|NP_001029575.1| transmembrane protein 97 [Bos taurus].
Length = 176
Score = 248 bits (634), Expect = 7e-66
Identities = 116/157 (73%), Positives = 128/157 (81%)
Frame = +2
Query: 191 EWLLGFYFLSHIPLTLLVDMQALLPPDLYPVELRNLCKWYTQEFKDTLLQSPPAWFKAFL 370
EW LGFYFLSHIP+TLL+D+Q +LP DLYPVELRNL +WY +EFKD LLQ+PPAWFK+FL
Sbjct: 11 EWFLGFYFLSHIPITLLMDLQGVLPRDLYPVELRNLQQWYIEEFKDPLLQTPPAWFKSFL 70
Query: 371 FCELVFQLPFFPFATYAFFKGGCKWIRTPAIIYSVHTMTTLIPIISTFLFEDFSKASCFK 550
FCELVFQLPFFP A YAFFKGGCKWIRTPAIIYSVHTMTTLIPI+ST L +DFSKAS F+
Sbjct: 71 FCELVFQLPFFPIAAYAFFKGGCKWIRTPAIIYSVHTMTTLIPILSTLLLDDFSKASHFR 130
Query: 551 GQGPTTFHERLFLLSVXXXXXXXXXXXXXXXXRNPYY 661
GQGP TF ERLFL+SV RNPYY
Sbjct: 131 GQGPKTFQERLFLISVYIPYFLIPLILLLFMVRNPYY 167
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,426,135
Number of extensions: 1400530
Number of successful extensions: 4099
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4098
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 337
Effective length of database: 14,207,134
Effective search space: 4787804158
Effective search space used: 4787804158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002238
(1328 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853562.1| PREDICTED: hypothetical protein XP_848469 [Cani... 239 4e-63
>ref|XP_853562.1| PREDICTED: hypothetical protein XP_848469 [Canis familiaris].
Length = 176
Score = 239 bits (610), Expect = 4e-63
Identities = 113/157 (71%), Positives = 125/157 (79%)
Frame = +2
Query: 191 EWLLGFYFLSHIPLTLLVDMQALLPPDLYPVELRNLCKWYTQEFKDTLLQSPPAWFKAFL 370
EWLLG YFLSHIP+TLL+D+Q +LP +LY VEL NL KWYT EFKD LLQ+PP WFK+FL
Sbjct: 11 EWLLGLYFLSHIPITLLMDLQVVLPRELYSVELTNLLKWYTTEFKDPLLQAPPTWFKSFL 70
Query: 371 FCELVFQLPFFPFATYAFFKGGCKWIRTPAIIYSVHTMTTLIPIISTFLFEDFSKASCFK 550
FCELVFQLPFFP ATYAF +GGC+WIRTPAIIYSVHTMTTLIPI+ST LFEDFSKAS FK
Sbjct: 71 FCELVFQLPFFPMATYAFLRGGCRWIRTPAIIYSVHTMTTLIPILSTLLFEDFSKASGFK 130
Query: 551 GQGPTTFHERLFLLSVXXXXXXXXXXXXXXXXRNPYY 661
GQGP TF ERL L+SV R+PYY
Sbjct: 131 GQGPKTFRERLTLVSVYAPYLLIPLMLLLFMLRSPYY 167
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,686,680
Number of extensions: 1434092
Number of successful extensions: 4337
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4331
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 336
Effective length of database: 15,340,888
Effective search space: 5154538368
Effective search space used: 5154538368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002238
(1328 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055388.2| transmembrane protein 97 [Homo sapiens]. 243 3e-64
>ref|NP_055388.2| transmembrane protein 97 [Homo sapiens].
Length = 176
Score = 243 bits (620), Expect = 3e-64
Identities = 115/157 (73%), Positives = 125/157 (79%)
Frame = +2
Query: 191 EWLLGFYFLSHIPLTLLVDMQALLPPDLYPVELRNLCKWYTQEFKDTLLQSPPAWFKAFL 370
EWLLG YFLSHIP+TL +D+QA+LP +LYPVE RNL KWY +EFKD LLQ PPAWFK+FL
Sbjct: 11 EWLLGLYFLSHIPITLFMDLQAVLPRELYPVEFRNLLKWYAKEFKDPLLQEPPAWFKSFL 70
Query: 371 FCELVFQLPFFPFATYAFFKGGCKWIRTPAIIYSVHTMTTLIPIISTFLFEDFSKASCFK 550
FCELVFQLPFFP ATYAF KG CKWIRTPAIIYSVHTMTTLIPI+STFLFEDFSKAS FK
Sbjct: 71 FCELVFQLPFFPIATYAFLKGSCKWIRTPAIIYSVHTMTTLIPILSTFLFEDFSKASGFK 130
Query: 551 GQGPTTFHERLFLLSVXXXXXXXXXXXXXXXXRNPYY 661
GQ P T HERL L+SV R+PYY
Sbjct: 131 GQRPETLHERLTLVSVYAPYLLIPFILLIFMLRSPYY 167
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,605,464
Number of extensions: 1406801
Number of successful extensions: 4043
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4036
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 336
Effective length of database: 14,802,980
Effective search space: 4973801280
Effective search space used: 4973801280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002238
(1328 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598467.1| transmembrane protein 97 [Mus musculus]. 221 1e-57
>ref|NP_598467.1| transmembrane protein 97 [Mus musculus].
Length = 176
Score = 221 bits (563), Expect = 1e-57
Identities = 100/157 (63%), Positives = 117/157 (74%)
Frame = +2
Query: 191 EWLLGFYFLSHIPLTLLVDMQALLPPDLYPVELRNLCKWYTQEFKDTLLQSPPAWFKAFL 370
EWLLG YF+SHIP+TL +D+QA+LPP+LYP E NL +WY++EFKD L+Q PP WFK+FL
Sbjct: 11 EWLLGLYFVSHIPITLFIDLQAVLPPELYPQEFSNLLRWYSKEFKDPLMQEPPVWFKSFL 70
Query: 371 FCELVFQLPFFPFATYAFFKGGCKWIRTPAIIYSVHTMTTLIPIISTFLFEDFSKASCFK 550
CELVFQLPFFP A YAFFKG C+WIR PAIIY+ HT+TTLIPI+ T LFEDFSKA FK
Sbjct: 71 LCELVFQLPFFPIAAYAFFKGSCRWIRIPAIIYAAHTITTLIPILYTLLFEDFSKAVAFK 130
Query: 551 GQGPTTFHERLFLLSVXXXXXXXXXXXXXXXXRNPYY 661
GQ P +F ERL L+ V RNPYY
Sbjct: 131 GQRPESFRERLTLVGVYAPYLIIPLILLLFMLRNPYY 167
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,619,646
Number of extensions: 1183532
Number of successful extensions: 3519
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3508
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 338
Effective length of database: 12,493,815
Effective search space: 4222909470
Effective search space used: 4222909470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002238
(1328 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,339,220
Number of extensions: 924420
Number of successful extensions: 2538
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2536
Number of HSP's successfully gapped: 0
Length of query: 442
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 340
Effective length of database: 8,804,438
Effective search space: 2993508920
Effective search space used: 2993508920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002238
(1328 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 295 3e-77
>Sscrofa_Chr12
|| Length = 63588571
Score = 295 bits (149), Expect = 3e-77
Identities = 210/225 (93%), Gaps = 4/225 (1%)
Strand = Plus / Plus
Query: 1104 cactgatcagcaaaatgaatagtgggacaccgcgggccatttgtaggtttgaaattatgg 1163
|||||||||||| | |||||||||| |||||||||||||| |||||||| ||| ||||||
Sbjct: 46521316 cactgatcagcaga-tgaatagtgg-acaccgcgggccatctgtaggttggaa-ttatgg 46521372
Query: 1164 ctccgtaatattcactaaaaacttccttgcccccagccctaggtggggggagatatccta 1223
||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 46521373 ctctgta-tattcactaaagacttccttgcccccccccctaggtggggggagatatccta 46521431
Query: 1224 taaccggttgaaacttacctttccttaaagttcatacctggcatgactttccaaagtggg 1283
||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 46521432 taagcggttgaaacttagctttccttaaagttcatacctggcatgactttcagaagtggg 46521491
Query: 1284 tcaagctggaagctgtattgtttctctcttaaacaggtcgtccca 1328
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46521492 tcaagctggaagctgtattgtttctctcttaaacaggtcgtccca 46521536
Score = 218 bits (110), Expect = 6e-54
Identities = 113/114 (99%)
Strand = Plus / Minus
Query: 178 ccggcgcggcctggagtggttgctgggcttctacttcctctcccacatccccctcaccct 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46496115 ccggcgcggcctggagtggttgctgggcttctacttcctctcccacatccccctcaccct 46496056
Query: 238 gctcgtggatatgcaggcattgctgccgcccgatctctaccccgtcgagctgag 291
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 46496055 gctcgtggatatgcaggcattgctgccgcccgatctctaccccgtcgaggtgag 46496002
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,199,873
Number of extensions: 601
Number of successful extensions: 601
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 600
Number of HSP's successfully gapped: 2
Length of query: 1328
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1307
Effective length of database: 2,808,413,156
Effective search space: 3670595994892
Effective search space used: 3670595994892
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)