Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002242
(1068 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068818.1| sorcin [Bos taurus]. 353 1e-97
Alignment gi|XP_002685422.1| PREDICTED: grancalcin, EF-hand calcium bindi... 192 3e-49
Alignment gi|XP_583697.3| PREDICTED: grancalcin, EF-hand calcium binding ... 192 3e-49
Alignment gi|NP_001091461.1| peflin [Bos taurus]. 112 6e-25
Alignment gi|NP_001098967.1| programmed cell death 6 [Bos taurus]. 112 6e-25
Alignment gi|NP_776686.1| calpain small subunit 1 [Bos taurus]. 105 9e-23
Alignment gi|XP_002694832.1| PREDICTED: calpain small subunit 2-like [Bos... 99 8e-21
Alignment gi|NP_776685.1| calpain-3 [Bos taurus]. 97 2e-20
Alignment gi|NP_776684.1| calpain-1 catalytic subunit [Bos taurus]. 93 4e-19
Alignment gi|NP_001096556.1| calpain-2 catalytic subunit precursor [Bos t... 93 4e-19
>ref|NP_001068818.1| sorcin [Bos taurus].
Length = 183
Score = 353 bits (907), Expect = 1e-97
Identities = 171/172 (99%), Positives = 171/172 (99%)
Frame = +2
Query: 89 FPAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 268
FP QTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM
Sbjct: 12 FPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 71
Query: 269 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 448
SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK
Sbjct: 72 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 131
Query: 449 RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV
Sbjct: 132 RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 183
>ref|XP_002685422.1| PREDICTED: grancalcin, EF-hand calcium binding protein [Bos
taurus].
Length = 363
Score = 192 bits (489), Expect = 3e-49
Identities = 95/168 (56%), Positives = 120/168 (71%)
Frame = +2
Query: 101 TQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTM 280
T DP++ F A+AGQDG++DA+ELQ+CLTQSGI+G Y PF+LETCR+M++MLD
Sbjct: 219 TGDPMWKCFLAIAGQDGEVDAEELQKCLTQSGISGTYSPFSLETCRIMIAMLD------- 271
Query: 281 GFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYST 460
Q+FI+ D D SG+V+ EL +A+ MG+RLSPQ V +I KRYS
Sbjct: 272 ----------------QNFITVDKDGSGSVEHHELNQAIAAMGYRLSPQTVTTIVKRYSK 315
Query: 461 NGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
NG+I FDDY+ACCVKLRALTD FRRRD QQGVV+F YDDF+Q M+V
Sbjct: 316 NGRIFFDDYVACCVKLRALTDFFRRRDHLQQGVVSFVYDDFLQGTMAV 363
>ref|XP_583697.3| PREDICTED: grancalcin, EF-hand calcium binding protein [Bos
taurus].
Length = 363
Score = 192 bits (489), Expect = 3e-49
Identities = 95/168 (56%), Positives = 120/168 (71%)
Frame = +2
Query: 101 TQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTM 280
T DP++ F A+AGQDG++DA+ELQ+CLTQSGI+G Y PF+LETCR+M++MLD
Sbjct: 219 TGDPMWKCFLAIAGQDGEVDAEELQKCLTQSGISGTYSPFSLETCRIMIAMLD------- 271
Query: 281 GFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYST 460
Q+FI+ D D SG+V+ EL +A+ MG+RLSPQ V +I KRYS
Sbjct: 272 ----------------QNFITVDKDGSGSVEHHELNQAIAAMGYRLSPQTVTTIVKRYSK 315
Query: 461 NGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
NG+I FDDY+ACCVKLRALTD FRRRD QQGVV+F YDDF+Q M+V
Sbjct: 316 NGRIFFDDYVACCVKLRALTDFFRRRDHLQQGVVSFVYDDFLQGTMAV 363
>ref|NP_001091461.1| peflin [Bos taurus].
Length = 287
Score = 112 bits (280), Expect = 6e-25
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 4/174 (2%)
Frame = +2
Query: 92 PAQTQDPLYGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 268
P Y +F +V + G I EL++ L S + FN ETC +M++M D+
Sbjct: 115 PPNVDPEAYSWFQSVDSDHSGYISIKELKQALVNSN----WSSFNDETCLMMINMFDKTK 170
Query: 269 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 448
SG + F LW + W+ F +D D SG++ ELQ+AL+ MG+ LSPQ +
Sbjct: 171 SGRIDVYGFSALWKFIQQWKNLFQQYDRDCSGSISYTELQQALSQMGYNLSPQFTQLLVS 230
Query: 449 RY---STNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMS 601
RY S N + D +I C +L+ LT++FR +DTA QG V ++DF+ S
Sbjct: 231 RYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGSVRLSFEDFVTMTAS 284
>ref|NP_001098967.1| programmed cell death 6 [Bos taurus].
Length = 189
Score = 112 bits (280), Expect = 6e-25
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Frame = +2
Query: 143 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 322
+ G I +ELQ+ L+ G + PFN T R ++SM DR+ + F+EF +W +
Sbjct: 37 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 92
Query: 323 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 496
W+ F ++D D SG +D EL++AL+ G+RLS Q + + +++ G+ I FDD+I
Sbjct: 93 WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 152
Query: 497 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
C+ L+ LTD FRR DT Q G + Y+ ++ V S+
Sbjct: 153 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 188
>ref|NP_776686.1| calpain small subunit 1 [Bos taurus].
Length = 263
Score = 105 bits (261), Expect = 9e-23
Identities = 58/162 (35%), Positives = 87/162 (53%), Gaps = 4/162 (2%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLTQSGIAGG---YKPFNLETCRLMVSMLDRDMSGTMGFNEF 295
FA +AG D ++ A EL L + F ++TCR MV+++D D +G +GF EF
Sbjct: 100 FAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF 159
Query: 296 KELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNGKI 472
K LW + W+ + FD DRSGT+ EL A GFRL+ N I +RYS G +
Sbjct: 160 KYLWNNIKKWQAVYKQFDVDRSGTIGSSELPGAFEAAGFRLNEHLYNMIIRRYSDEGGNM 219
Query: 473 TFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
FD++I+C V+L A+ +F+ D G + +++Q M
Sbjct: 220 DFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTM 261
>ref|XP_002694832.1| PREDICTED: calpain small subunit 2-like [Bos taurus].
Length = 246
Score = 98.6 bits (244), Expect = 8e-21
Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 6/164 (3%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLDRDMSGTMGFN 289
FA +AG D ++ A +L L + + +K F+L+TCR +VS++D D +G +GF
Sbjct: 83 FAQLAGPDMEVGATDLMNILNK--VLSKHKDLKSDGFSLDTCRSIVSVMDSDTTGKLGFE 140
Query: 290 EFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNG 466
EFK LW + W+ + +D D+SG + +L AL GF+L+ Q I +RY+ +G
Sbjct: 141 EFKYLWNNIKKWQCVYKQYDRDQSGFLGSSQLPGALQAAGFQLNEQLYQMIVRRYAEEDG 200
Query: 467 KITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
+ F+++I+C V+L A+ +F+ D G++ +++Q M
Sbjct: 201 SMDFNNFISCLVRLDAMFRAFKSLDRDADGLIQVSIQEWLQLTM 244
>ref|NP_776685.1| calpain-3 [Bos taurus].
Length = 822
Score = 97.4 bits (241), Expect = 2e-20
Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 6/174 (3%)
Frame = +2
Query: 95 AQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLD 259
++ Q F +AG D +I ADEL+ L + + +K F LE+CR M++++D
Sbjct: 649 SEEQRQFRNIFRQIAGDDMEICADELKNVLNR--VVNKHKDLKTQGFTLESCRSMIALMD 706
Query: 260 RDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNS 439
D SG + EF LW + W++ F +D+D+SGT++ E++ A+ GF L+ Q +
Sbjct: 707 TDGSGRLNLQEFHHLWKKIKTWQKIFKHYDTDQSGTINSYEMRNAVKDAGFHLNNQLYDI 766
Query: 440 IAKRYSTN-GKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
I RY+ I FD +I C V+L + +F D G++ +++Q M
Sbjct: 767 ITMRYADKYMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQLTM 820
>ref|NP_776684.1| calpain-1 catalytic subunit [Bos taurus].
Length = 716
Score = 93.2 bits (230), Expect = 4e-19
Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 6/164 (3%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLDRDMSGTMGFN 289
F +AG+D +I EL+ L + I +K F+LE+CR MV+++DRD +G +G
Sbjct: 553 FRQLAGEDMEISVKELRTILNR--IISKHKDLRTTGFSLESCRSMVNLMDRDGNGKLGLV 610
Query: 290 EFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNG 466
EF LW + + F FD D+SG++ E++ A+ GF+L+ + I RYS +
Sbjct: 611 EFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAIEFAGFKLNKKLYELIITRYSEPDL 670
Query: 467 KITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
+ FD+++ C V+L + F+ DT GVV F ++Q M
Sbjct: 671 AVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTFDLFKWLQLTM 714
>ref|NP_001096556.1| calpain-2 catalytic subunit precursor [Bos taurus].
Length = 700
Score = 93.2 bits (230), Expect = 4e-19
Identities = 54/153 (35%), Positives = 86/153 (56%), Gaps = 7/153 (4%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLT------QSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGF 286
FA +AG+D +I A ELQ L Q + G F++ETC++MV MLD D SG +G
Sbjct: 538 FAQLAGEDAEISAFELQTILRRVLAKRQDIKSDG---FSIETCKIMVDMLDSDGSGKLGL 594
Query: 287 NEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNG 466
EF LW + +++ + D DRSGT++ E++KAL GF++ Q I R++ +
Sbjct: 595 KEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKMPCQLHQVIVARFADDD 654
Query: 467 K-ITFDDYIACCVKLRALTDSFRRRDTAQQGVV 562
I FD+++ C ++L L F++ D G++
Sbjct: 655 LIIDFDNFVRCLIRLETLFRIFKQLDPENTGMI 687
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,608,182
Number of extensions: 837525
Number of successful extensions: 2221
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 2206
Number of HSP's successfully gapped: 16
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002242
(1068 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532452.1| PREDICTED: similar to Sorcin (22 kDa protein) (... 353 1e-97
Alignment gi|XP_850249.1| PREDICTED: similar to grancalcin [Canis familia... 248 9e-66
Alignment gi|XP_851917.1| PREDICTED: similar to Programmed cell death pro... 112 6e-25
Alignment gi|XP_853634.1| PREDICTED: similar to Calpain small subunit 1 (... 102 6e-22
Alignment gi|XP_854701.1| PREDICTED: similar to penta-EF hand domain cont... 100 3e-21
Alignment gi|XP_859394.1| PREDICTED: similar to calpain 3 isoform c isofo... 100 4e-21
Alignment gi|XP_544399.2| PREDICTED: similar to calpain small subunit 2 [... 100 4e-21
Alignment gi|XP_859431.1| PREDICTED: similar to Calpain-3 (Calpain L3) (C... 97 2e-20
Alignment gi|XP_859356.1| PREDICTED: similar to Calpain-3 (Calpain L3) (C... 97 2e-20
Alignment gi|XP_859325.1| PREDICTED: similar to Calpain-3 (Calpain L3) (C... 97 2e-20
>ref|XP_532452.1| PREDICTED: similar to Sorcin (22 kDa protein) (CP-22) (V19) [Canis
familiaris].
Length = 198
Score = 353 bits (907), Expect = 1e-97
Identities = 171/172 (99%), Positives = 171/172 (99%)
Frame = +2
Query: 89 FPAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 268
FP QTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM
Sbjct: 27 FPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 86
Query: 269 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 448
SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK
Sbjct: 87 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 146
Query: 449 RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV
Sbjct: 147 RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 198
>ref|XP_850249.1| PREDICTED: similar to grancalcin [Canis familiaris].
Length = 294
Score = 248 bits (632), Expect = 9e-66
Identities = 119/200 (59%), Positives = 153/200 (76%)
Frame = +2
Query: 107 DPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGF 286
DP++ YF AVAGQDG++DA+ELQRCLTQSGI G Y PF+LETCR+M++MLDRD +G MGF
Sbjct: 52 DPMWTYFTAVAGQDGEVDAEELQRCLTQSGINGIYSPFSLETCRIMIAMLDRDYTGKMGF 111
Query: 287 NEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNG 466
NEFKELWA LN W+QHFI+ D D+SGTV+ EL +A+ MG+RLSPQ + +I KRYS NG
Sbjct: 112 NEFKELWAALNAWKQHFIAIDQDQSGTVEHHELNQAIAAMGYRLSPQTLTAIVKRYSKNG 171
Query: 467 KITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV*IQRKLNEHNQHSN 646
+I FDDY+ACCVKLRALTD FRRRD QQGVVNF YDD + +Q ++++ + + +
Sbjct: 172 RIFFDDYVACCVKLRALTDFFRRRDHLQQGVVNFVYDD----PRRLYLQDRVHKKSNNES 227
Query: 647 WNSSLLFAFSSRVQTYTATF 706
W L++ + +V YT F
Sbjct: 228 W-IKLVYTY-LKVTNYTFLF 245
>ref|XP_851917.1| PREDICTED: similar to Programmed cell death protein 6 (Probable
calcium-binding protein ALG-2) (PMP41) (ALG-257) [Canis
familiaris].
Length = 189
Score = 112 bits (280), Expect = 6e-25
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Frame = +2
Query: 143 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 322
+ G I +ELQ+ L+ G + PFN T R ++SM DR+ + F+EF +W +
Sbjct: 37 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 92
Query: 323 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 496
W+ F ++D D SG +D EL++AL+ G+RLS Q + + +++ G+ I FDD+I
Sbjct: 93 WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 152
Query: 497 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
C+ L+ LTD FRR DT Q G + Y+ ++ V S+
Sbjct: 153 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 188
>ref|XP_853634.1| PREDICTED: similar to Calpain small subunit 1 (CSS1)
(Calcium-dependent protease small subunit 1)
(Calcium-dependent protease small subunit) (CDPS)
(Calpain regulatory subunit) (Calcium-activated neutral
proteinase small subunit) (CANP small subunit)...
isoform 1 [Canis familiaris].
Length = 271
Score = 102 bits (254), Expect = 6e-22
Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 4/162 (2%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLTQSGIAGG---YKPFNLETCRLMVSMLDRDMSGTMGFNEF 295
FA +AG D ++ A EL L + F ++TCR MV+++D D +G +GF EF
Sbjct: 108 FAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFQEF 167
Query: 296 KELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNGKI 472
K LW + W+ + FD DRSGT+ EL A GF L+ N I +RYS G +
Sbjct: 168 KYLWNNIKKWQAIYKQFDVDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDEGGNM 227
Query: 473 TFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
FD++I+C V+L A+ +F+ D G + +++Q M
Sbjct: 228 DFDNFISCLVRLDAMFRAFKSLDKNGTGQIQVNIQEWLQLTM 269
>ref|XP_854701.1| PREDICTED: similar to penta-EF hand domain containing 1 [Canis
familiaris].
Length = 278
Score = 100 bits (248), Expect = 3e-21
Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Frame = +2
Query: 122 YFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKE 301
+ + + + G++ + + L+ S P+ C + ++M D+ SG + F
Sbjct: 120 FLSVTSARSGKVSRKAVPQTLSCS-------PYAASPCLMRINMFDKTKSGRIDVYGFSA 172
Query: 302 LWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY---STNGKI 472
LW + W+ F +D DRSG++ ELQ+AL+ MG+ LSPQ + RY S N +
Sbjct: 173 LWKFIQQWKNLFQQYDRDRSGSISHTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAM 232
Query: 473 TFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMS 601
D +I C +L+ LT++FR +DTA QG + ++DF+ S
Sbjct: 233 QLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 275
>ref|XP_859394.1| PREDICTED: similar to calpain 3 isoform c isoform 19 [Canis
familiaris].
Length = 724
Score = 99.8 bits (247), Expect = 4e-21
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 6/175 (3%)
Frame = +2
Query: 92 PAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSML 256
P++ Q F +AG D ++ ADEL+ L + K F LE+CR M+++L
Sbjct: 550 PSEEQLQFRNIFRQIAGDDMEVCADELKNILNM--VVNKNKDLKTQGFTLESCRSMIALL 607
Query: 257 DRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVN 436
D D SG + EF LW + W++ F +D+D+SGT++ E++ A+ GF L+ Q +
Sbjct: 608 DTDGSGRLNLQEFHHLWKKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNSQLYD 667
Query: 437 SIAKRYS-TNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
I RY+ + I FD +I C V+L + +F D G++ +++Q M
Sbjct: 668 IITMRYADKHMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQLTM 722
>ref|XP_544399.2| PREDICTED: similar to calpain small subunit 2 [Canis familiaris].
Length = 251
Score = 99.8 bits (247), Expect = 4e-21
Identities = 54/164 (32%), Positives = 94/164 (57%), Gaps = 6/164 (3%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLDRDMSGTMGFN 289
FA +AG D ++ A +L L + + +K F+L+TCR +VS++D D +G +GF
Sbjct: 88 FAQLAGPDMEVGATDLMNILNK--VLSKHKDLKTDGFSLDTCRSIVSVMDSDTTGKLGFE 145
Query: 290 EFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNG 466
EFK LW + W+ + +D DRSG++ +L+ AL GF+L+ Q I +R++ +G
Sbjct: 146 EFKYLWNNIKKWQCVYKQYDRDRSGSLGSSQLRAALQAAGFQLNEQLYQMIIRRFADEDG 205
Query: 467 KITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
+ F+++I+C V+L A+ F+ D G+V +++Q M
Sbjct: 206 SMDFNNFISCLVRLDAMFRVFKSLDRDADGLVQVSIQEWLQLTM 249
>ref|XP_859431.1| PREDICTED: similar to Calpain-3 (Calpain L3) (Calpain p94)
(Calcium-activated neutral proteinase 3) (CANP 3)
(Muscle-specific calcium-activated neutral protease 3)
isoform 20 [Canis familiaris].
Length = 778
Score = 97.4 bits (241), Expect = 2e-20
Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLDRDMSGTMGFN 289
F +AG D ++ ADEL+ L + K F LE+CR M+++LD D SG +
Sbjct: 615 FRQIAGDDMEVCADELKNILNM--VVNKNKDLKTQGFTLESCRSMIALLDTDGSGRLNLQ 672
Query: 290 EFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNG 466
EF LW + W++ F +D+D+SGT++ E++ A+ GF L+ Q + I RY+ +
Sbjct: 673 EFHHLWKKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNSQLYDIITMRYADKHM 732
Query: 467 KITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
I FD +I C V+L + +F D G++ +++Q M
Sbjct: 733 NIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQLTM 776
>ref|XP_859356.1| PREDICTED: similar to Calpain-3 (Calpain L3) (Calpain p94)
(Calcium-activated neutral proteinase 3) (CANP 3)
(Muscle-specific calcium-activated neutral protease 3)
isoform 18 [Canis familiaris].
Length = 815
Score = 97.4 bits (241), Expect = 2e-20
Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLDRDMSGTMGFN 289
F +AG D ++ ADEL+ L + K F LE+CR M+++LD D SG +
Sbjct: 652 FRQIAGDDMEVCADELKNILNM--VVNKNKDLKTQGFTLESCRSMIALLDTDGSGRLNLQ 709
Query: 290 EFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNG 466
EF LW + W++ F +D+D+SGT++ E++ A+ GF L+ Q + I RY+ +
Sbjct: 710 EFHHLWKKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNSQLYDIITMRYADKHM 769
Query: 467 KITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
I FD +I C V+L + +F D G++ +++Q M
Sbjct: 770 NIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQLTM 813
>ref|XP_859325.1| PREDICTED: similar to Calpain-3 (Calpain L3) (Calpain p94)
(Calcium-activated neutral proteinase 3) (CANP 3)
(Muscle-specific calcium-activated neutral protease 3)
isoform 17 [Canis familiaris].
Length = 817
Score = 97.4 bits (241), Expect = 2e-20
Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLDRDMSGTMGFN 289
F +AG D ++ ADEL+ L + K F LE+CR M+++LD D SG +
Sbjct: 654 FRQIAGDDMEVCADELKNILNM--VVNKNKDLKTQGFTLESCRSMIALLDTDGSGRLNLQ 711
Query: 290 EFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNG 466
EF LW + W++ F +D+D+SGT++ E++ A+ GF L+ Q + I RY+ +
Sbjct: 712 EFHHLWKKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNSQLYDIITMRYADKHM 771
Query: 467 KITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
I FD +I C V+L + +F D G++ +++Q M
Sbjct: 772 NIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQLTM 815
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,030,189
Number of extensions: 857812
Number of successful extensions: 2545
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 2494
Number of HSP's successfully gapped: 33
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002242
(1068 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_944490.1| sorcin isoform b [Homo sapiens]. 352 3e-97
Alignment gi|NP_003121.1| sorcin isoform a [Homo sapiens]. 352 3e-97
Alignment gi|NP_036330.1| grancalcin [Homo sapiens]. 238 9e-63
Alignment gi|NP_036524.1| peflin [Homo sapiens]. 112 4e-25
Alignment gi|NP_037364.1| programmed cell death protein 6 [Homo sapiens]. 111 1e-24
Alignment gi|NP_001740.1| calpain small subunit 1 [Homo sapiens]. 103 2e-22
Alignment gi|NP_001003962.1| calpain small subunit 1 [Homo sapiens]. 103 2e-22
Alignment gi|NP_000061.1| calpain-3 isoform a [Homo sapiens]. 99 5e-21
Alignment gi|NP_077320.1| calpain-3 isoform b [Homo sapiens]. 99 5e-21
Alignment gi|NP_775111.1| calpain-3 isoform d [Homo sapiens]. 99 5e-21
>ref|NP_944490.1| sorcin isoform b [Homo sapiens].
Length = 183
Score = 352 bits (904), Expect = 3e-97
Identities = 170/172 (98%), Positives = 171/172 (99%)
Frame = +2
Query: 89 FPAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 268
FP QTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM
Sbjct: 12 FPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 71
Query: 269 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 448
SGTMGFNEFKELWAVLNGWRQHFISFD+DRSGTVDPQELQKALTTMGFRLSPQAVNSIAK
Sbjct: 72 SGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 131
Query: 449 RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV
Sbjct: 132 RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 183
>ref|NP_003121.1| sorcin isoform a [Homo sapiens].
Length = 198
Score = 352 bits (904), Expect = 3e-97
Identities = 170/172 (98%), Positives = 171/172 (99%)
Frame = +2
Query: 89 FPAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 268
FP QTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM
Sbjct: 27 FPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 86
Query: 269 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 448
SGTMGFNEFKELWAVLNGWRQHFISFD+DRSGTVDPQELQKALTTMGFRLSPQAVNSIAK
Sbjct: 87 SGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 146
Query: 449 RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV
Sbjct: 147 RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 198
>ref|NP_036330.1| grancalcin [Homo sapiens].
Length = 217
Score = 238 bits (606), Expect = 9e-63
Identities = 108/166 (65%), Positives = 136/166 (81%)
Frame = +2
Query: 107 DPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGF 286
D +Y YF+AVAGQDG++DA+ELQRCLTQSGI G Y PF+LETCR+M++MLDRD +G MGF
Sbjct: 52 DSVYTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGF 111
Query: 287 NEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNG 466
N FKELWA LN W+++F++ D D SGTV+ EL++A+ MG+RLSPQ + +I KRYS NG
Sbjct: 112 NAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNG 171
Query: 467 KITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
+I FDDY+ACCVKLRALTD FR+RD QQG NF YDDF+Q M++
Sbjct: 172 RIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI 217
>ref|NP_036524.1| peflin [Homo sapiens].
Length = 284
Score = 112 bits (281), Expect = 4e-25
Identities = 60/174 (34%), Positives = 91/174 (52%), Gaps = 4/174 (2%)
Frame = +2
Query: 92 PAQTQDPLYGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 268
P Y +F +V + G I EL++ L + FN ETC +M++M D+
Sbjct: 112 PPNVDPEAYSWFQSVDSDHSGYISMKELKQALVNCN----WSSFNDETCLMMINMFDKTK 167
Query: 269 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 448
SG + F LW + W+ F +D DRSG++ ELQ+AL+ MG+ LSPQ +
Sbjct: 168 SGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMGYNLSPQFTQLLVS 227
Query: 449 RY---STNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMS 601
RY S N + D +I C +L+ LT++FR +DTA QG + ++DF+ S
Sbjct: 228 RYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 281
>ref|NP_037364.1| programmed cell death protein 6 [Homo sapiens].
Length = 191
Score = 111 bits (278), Expect = 1e-24
Identities = 57/156 (36%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Frame = +2
Query: 143 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 322
+ G I ELQ+ L+ G + PFN T R ++SM DR+ + F+EF +W +
Sbjct: 39 RSGVISDTELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 94
Query: 323 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 496
W+ F ++D D SG +D EL++AL+ G+RLS Q + + +++ G+ I FDD+I
Sbjct: 95 WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 154
Query: 497 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
C+ L+ LTD FRR DT Q G + Y+ ++ V S+
Sbjct: 155 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 190
>ref|NP_001740.1| calpain small subunit 1 [Homo sapiens].
Length = 268
Score = 103 bits (258), Expect = 2e-22
Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 4/162 (2%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLTQSGIAGG---YKPFNLETCRLMVSMLDRDMSGTMGFNEF 295
FA +AG D ++ A EL L + F ++TCR MV+++D D +G +GF EF
Sbjct: 105 FAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF 164
Query: 296 KELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNGKI 472
K LW + W+ + FD+DRSGT+ EL A GF L+ N I +RYS +G +
Sbjct: 165 KYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNM 224
Query: 473 TFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
FD++I+C V+L A+ +F+ D G + +++Q M
Sbjct: 225 DFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTM 266
>ref|NP_001003962.1| calpain small subunit 1 [Homo sapiens].
Length = 268
Score = 103 bits (258), Expect = 2e-22
Identities = 57/162 (35%), Positives = 88/162 (54%), Gaps = 4/162 (2%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLTQSGIAGG---YKPFNLETCRLMVSMLDRDMSGTMGFNEF 295
FA +AG D ++ A EL L + F ++TCR MV+++D D +G +GF EF
Sbjct: 105 FAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF 164
Query: 296 KELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNGKI 472
K LW + W+ + FD+DRSGT+ EL A GF L+ N I +RYS +G +
Sbjct: 165 KYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAFEAAGFHLNEHLYNMIIRRYSDESGNM 224
Query: 473 TFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
FD++I+C V+L A+ +F+ D G + +++Q M
Sbjct: 225 DFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTM 266
>ref|NP_000061.1| calpain-3 isoform a [Homo sapiens].
Length = 821
Score = 99.4 bits (246), Expect = 5e-21
Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
Frame = +2
Query: 95 AQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLD 259
++ Q F +AG D +I ADEL++ L + +K F LE+CR M++++D
Sbjct: 648 SEEQQQFRNIFKQIAGDDMEICADELKKVLNT--VVNKHKDLKTHGFTLESCRSMIALMD 705
Query: 260 RDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNS 439
D SG + EF LW + W++ F +D+D+SGT++ E++ A+ GF L+ Q +
Sbjct: 706 TDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDI 765
Query: 440 IAKRYS-TNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
I RY+ + I FD +I C V+L + +F D G++ +++Q M
Sbjct: 766 ITMRYADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTM 819
>ref|NP_077320.1| calpain-3 isoform b [Homo sapiens].
Length = 815
Score = 99.4 bits (246), Expect = 5e-21
Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
Frame = +2
Query: 95 AQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLD 259
++ Q F +AG D +I ADEL++ L + +K F LE+CR M++++D
Sbjct: 642 SEEQQQFRNIFKQIAGDDMEICADELKKVLNT--VVNKHKDLKTHGFTLESCRSMIALMD 699
Query: 260 RDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNS 439
D SG + EF LW + W++ F +D+D+SGT++ E++ A+ GF L+ Q +
Sbjct: 700 TDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDI 759
Query: 440 IAKRYS-TNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
I RY+ + I FD +I C V+L + +F D G++ +++Q M
Sbjct: 760 ITMRYADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTM 813
>ref|NP_775111.1| calpain-3 isoform d [Homo sapiens].
Length = 309
Score = 99.4 bits (246), Expect = 5e-21
Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
Frame = +2
Query: 95 AQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLD 259
++ Q F +AG D +I ADEL++ L + +K F LE+CR M++++D
Sbjct: 136 SEEQQQFRNIFKQIAGDDMEICADELKKVLNT--VVNKHKDLKTHGFTLESCRSMIALMD 193
Query: 260 RDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNS 439
D SG + EF LW + W++ F +D+D+SGT++ E++ A+ GF L+ Q +
Sbjct: 194 TDGSGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDI 253
Query: 440 IAKRYS-TNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
I RY+ + I FD +I C V+L + +F D G++ +++Q M
Sbjct: 254 ITMRYADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTM 307
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,584,276
Number of extensions: 857713
Number of successful extensions: 2441
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 2407
Number of HSP's successfully gapped: 26
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002242
(1068 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079894.2| sorcin isoform 2 [Mus musculus]. 342 2e-94
Alignment gi|NP_001074443.1| sorcin isoform 1 [Mus musculus]. 342 2e-94
Alignment gi|NP_663498.1| grancalcin [Mus musculus]. 244 1e-64
Alignment gi|NP_080717.2| peflin [Mus musculus]. 115 4e-26
Alignment gi|NP_035181.1| programmed cell death protein 6 [Mus musculus]. 112 5e-25
Alignment gi|NP_033925.2| calpain small subunit 1 [Mus musculus]. 100 3e-21
Alignment gi|NP_001103231.1| calpain-3 isoform b [Mus musculus]. 99 6e-21
Alignment gi|NP_001171270.1| calpain-3 isoform c [Mus musculus]. 99 6e-21
Alignment gi|NP_031627.2| calpain-3 isoform a [Mus musculus]. 99 6e-21
Alignment gi|NP_081388.1| calpain small subunit 2 [Mus musculus]. 99 7e-21
>ref|NP_079894.2| sorcin isoform 2 [Mus musculus].
Length = 183
Score = 342 bits (878), Expect = 2e-94
Identities = 164/172 (95%), Positives = 168/172 (97%)
Frame = +2
Query: 89 FPAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 268
FP QTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM
Sbjct: 12 FPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 71
Query: 269 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 448
SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQ VNS+AK
Sbjct: 72 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQTVNSVAK 131
Query: 449 RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
RYST+GKITFDDYIACCVKLRALTDSFRRRD+ QQGVVNF YDDFIQCVM+V
Sbjct: 132 RYSTSGKITFDDYIACCVKLRALTDSFRRRDSGQQGVVNFSYDDFIQCVMTV 183
>ref|NP_001074443.1| sorcin isoform 1 [Mus musculus].
Length = 198
Score = 342 bits (878), Expect = 2e-94
Identities = 164/172 (95%), Positives = 168/172 (97%)
Frame = +2
Query: 89 FPAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 268
FP QTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM
Sbjct: 27 FPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 86
Query: 269 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 448
SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQ VNS+AK
Sbjct: 87 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQTVNSVAK 146
Query: 449 RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
RYST+GKITFDDYIACCVKLRALTDSFRRRD+ QQGVVNF YDDFIQCVM+V
Sbjct: 147 RYSTSGKITFDDYIACCVKLRALTDSFRRRDSGQQGVVNFSYDDFIQCVMTV 198
>ref|NP_663498.1| grancalcin [Mus musculus].
Length = 220
Score = 244 bits (622), Expect = 1e-64
Identities = 109/166 (65%), Positives = 139/166 (83%)
Frame = +2
Query: 107 DPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGF 286
D ++ YF AVAGQDG++DA+ELQRCLTQSGI+G Y PF+LETCR+M++MLDRD +G MGF
Sbjct: 55 DSMWTYFTAVAGQDGEVDAEELQRCLTQSGISGTYAPFSLETCRIMIAMLDRDYTGKMGF 114
Query: 287 NEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNG 466
NEFKELWA LN W+Q+F++ D D+SGTV+ EL +A+ MG+RLSPQ + +I +RYS NG
Sbjct: 115 NEFKELWAALNAWKQNFMTIDQDQSGTVEHHELSQAIALMGYRLSPQTLAAIVRRYSKNG 174
Query: 467 KITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
+I FDDY+ACCVKLRALTD FRRRD QQG+VNF Y+DF+Q M++
Sbjct: 175 RIFFDDYVACCVKLRALTDFFRRRDHLQQGIVNFMYEDFLQGTMTI 220
>ref|NP_080717.2| peflin [Mus musculus].
Length = 275
Score = 115 bits (289), Expect = 4e-26
Identities = 63/174 (36%), Positives = 90/174 (51%), Gaps = 4/174 (2%)
Frame = +2
Query: 92 PAQTQDPLYGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 268
P Y +F +V A G I EL++ L S + FN ETC +M++M D+
Sbjct: 103 PPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSN----WSSFNDETCLMMINMFDKTK 158
Query: 269 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 448
SG + F LW L WR F +D DRSG++ ELQ+AL+ MG+ LSPQ +
Sbjct: 159 SGRIDVAGFSALWKFLQQWRNLFQQYDRDRSGSISSTELQQALSQMGYNLSPQFTQLLVS 218
Query: 449 RYSTNGKI---TFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMS 601
RY I D +I C +L+ LT++FR +DTA QG + ++DF+ S
Sbjct: 219 RYCARSAIPAMQLDCFIKVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 272
>ref|NP_035181.1| programmed cell death protein 6 [Mus musculus].
Length = 191
Score = 112 bits (280), Expect = 5e-25
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Frame = +2
Query: 143 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 322
+ G I +ELQ+ L+ G + PFN T R ++SM DR+ + F+EF +W +
Sbjct: 39 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 94
Query: 323 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 496
W+ F ++D D SG +D EL++AL+ G+RLS Q + + +++ G+ I FDD+I
Sbjct: 95 WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 154
Query: 497 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
C+ L+ LTD FRR DT Q G + Y+ ++ V S+
Sbjct: 155 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 190
>ref|NP_033925.2| calpain small subunit 1 [Mus musculus].
Length = 268
Score = 99.8 bits (247), Expect = 3e-21
Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 4/162 (2%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLTQSGIAGG---YKPFNLETCRLMVSMLDRDMSGTMGFNEF 295
F +AG D ++ A EL L + F ++TCR MV+++D D +G +GF EF
Sbjct: 105 FVQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF 164
Query: 296 KELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNGKI 472
K LW + W+ + FD+DRSGT+ EL A GF L+ + I +RY+ +G +
Sbjct: 165 KYLWNNIKKWQAIYKRFDTDRSGTIGSHELPGAFEAAGFHLNEHLYSMIIRRYADESGNM 224
Query: 473 TFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
FD++I+C V+L A+ +F+ D G + +++Q M
Sbjct: 225 DFDNFISCLVRLDAMFRAFKSLDKNGTGQIQVNIQEWLQLTM 266
>ref|NP_001103231.1| calpain-3 isoform b [Mus musculus].
Length = 709
Score = 99.0 bits (245), Expect = 6e-21
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 6/174 (3%)
Frame = +2
Query: 95 AQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLD 259
++ Q F +AG D +I ADEL+ L + +K F LE+CR M++++D
Sbjct: 536 SEEQQQFRNIFRQIAGDDMEICADELKNVLNT--VVNKHKDLKTQGFTLESCRSMIALMD 593
Query: 260 RDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNS 439
D SG + EF LW + W++ F +D+D SGT++ E++ A+ GF L+ Q +
Sbjct: 594 TDGSGRLNLQEFHHLWKKIKAWQKIFKHYDTDHSGTINSYEMRNAVNDAGFHLNSQLYDI 653
Query: 440 IAKRYS-TNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
I RY+ + I FD +I C V+L + +F D G++ +++Q M
Sbjct: 654 ITMRYADKHMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQLTM 707
>ref|NP_001171270.1| calpain-3 isoform c [Mus musculus].
Length = 729
Score = 99.0 bits (245), Expect = 6e-21
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 6/174 (3%)
Frame = +2
Query: 95 AQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLD 259
++ Q F +AG D +I ADEL+ L + +K F LE+CR M++++D
Sbjct: 556 SEEQQQFRNIFRQIAGDDMEICADELKNVLNT--VVNKHKDLKTQGFTLESCRSMIALMD 613
Query: 260 RDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNS 439
D SG + EF LW + W++ F +D+D SGT++ E++ A+ GF L+ Q +
Sbjct: 614 TDGSGRLNLQEFHHLWKKIKAWQKIFKHYDTDHSGTINSYEMRNAVNDAGFHLNSQLYDI 673
Query: 440 IAKRYS-TNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
I RY+ + I FD +I C V+L + +F D G++ +++Q M
Sbjct: 674 ITMRYADKHMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQLTM 727
>ref|NP_031627.2| calpain-3 isoform a [Mus musculus].
Length = 821
Score = 99.0 bits (245), Expect = 6e-21
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 6/174 (3%)
Frame = +2
Query: 95 AQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLD 259
++ Q F +AG D +I ADEL+ L + +K F LE+CR M++++D
Sbjct: 648 SEEQQQFRNIFRQIAGDDMEICADELKNVLNT--VVNKHKDLKTQGFTLESCRSMIALMD 705
Query: 260 RDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNS 439
D SG + EF LW + W++ F +D+D SGT++ E++ A+ GF L+ Q +
Sbjct: 706 TDGSGRLNLQEFHHLWKKIKAWQKIFKHYDTDHSGTINSYEMRNAVNDAGFHLNSQLYDI 765
Query: 440 IAKRYS-TNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
I RY+ + I FD +I C V+L + +F D G++ +++Q M
Sbjct: 766 ITMRYADKHMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQLTM 819
>ref|NP_081388.1| calpain small subunit 2 [Mus musculus].
Length = 247
Score = 98.6 bits (244), Expect = 7e-21
Identities = 53/164 (32%), Positives = 94/164 (57%), Gaps = 6/164 (3%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLDRDMSGTMGFN 289
F +AG D ++ A +L L + + +K F+L+TCR +VS++D D +G +GF
Sbjct: 84 FTQLAGPDMEVGATDLMNILNK--VLSKHKELKTEGFSLDTCRSIVSVMDSDTTGKLGFE 141
Query: 290 EFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNG 466
EFK LW + W+ F +DSD SG++ +L A+ GF+L+ Q I +RY+ +G
Sbjct: 142 EFKYLWNNIKKWQCVFKQYDSDHSGSLGSSQLHGAMQAAGFQLNEQLYLMIVRRYADEDG 201
Query: 467 KITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
+ F+++I+C V+L A+ +F+ D + G++ +++Q M
Sbjct: 202 GMDFNNFISCLVRLDAMFRAFKALDRDRDGLIQVSIREWLQLTM 245
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,366,515
Number of extensions: 733892
Number of successful extensions: 1981
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 1957
Number of HSP's successfully gapped: 17
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002242
(1068 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130171.1| PREDICTED: sorcin-like isoform 2 [Sus scrofa]. 355 2e-98
Alignment gi|XP_003130170.1| PREDICTED: sorcin-like isoform 1 [Sus scrofa]. 355 2e-98
Alignment gi|XP_003356316.1| PREDICTED: peflin-like isoform 2 [Sus scrofa]. 110 1e-24
Alignment gi|XP_003127816.2| PREDICTED: peflin-like isoform 1 [Sus scrofa]. 110 1e-24
Alignment gi|NP_999483.1| calpain small subunit 1 [Sus scrofa]. 101 8e-22
Alignment gi|XP_003127026.1| PREDICTED: calpain small subunit 2-like [Sus... 100 1e-21
Alignment gi|NP_999336.1| calpain-3 [Sus scrofa]. 99 3e-21
Alignment gi|XP_003362187.1| PREDICTED: programmed cell death protein 6-l... 94 1e-19
Alignment gi|XP_001927273.1| PREDICTED: calpain-9 isoform 2 [Sus scrofa]. 94 1e-19
Alignment gi|XP_001927250.1| PREDICTED: calpain-9 isoform 1 [Sus scrofa]. 94 1e-19
>ref|XP_003130171.1| PREDICTED: sorcin-like isoform 2 [Sus scrofa].
Length = 183
Score = 355 bits (911), Expect = 2e-98
Identities = 172/172 (100%), Positives = 172/172 (100%)
Frame = +2
Query: 89 FPAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 268
FPAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM
Sbjct: 12 FPAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 71
Query: 269 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 448
SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK
Sbjct: 72 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 131
Query: 449 RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV
Sbjct: 132 RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 183
>ref|XP_003130170.1| PREDICTED: sorcin-like isoform 1 [Sus scrofa].
Length = 199
Score = 355 bits (911), Expect = 2e-98
Identities = 172/172 (100%), Positives = 172/172 (100%)
Frame = +2
Query: 89 FPAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 268
FPAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM
Sbjct: 28 FPAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 87
Query: 269 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 448
SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK
Sbjct: 88 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 147
Query: 449 RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV
Sbjct: 148 RYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 199
>ref|XP_003356316.1| PREDICTED: peflin-like isoform 2 [Sus scrofa].
Length = 198
Score = 110 bits (275), Expect = 1e-24
Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 4/174 (2%)
Frame = +2
Query: 92 PAQTQDPLYGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 268
P Y +F +V + G I EL++ L S + FN ETC +M+++ D+
Sbjct: 26 PPNVDPEAYSWFQSVDSDHSGYISIKELKQALVNSN----WSSFNDETCLMMINLFDKTK 81
Query: 269 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 448
+G + F LW + W+ F +D D SG++ ELQ+AL+ MG+ LSPQ +
Sbjct: 82 TGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVS 141
Query: 449 RY---STNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMS 601
RY S N + D +I C +L+ LT++FR +DTA QG + ++DF+ S
Sbjct: 142 RYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 195
>ref|XP_003127816.2| PREDICTED: peflin-like isoform 1 [Sus scrofa].
Length = 289
Score = 110 bits (275), Expect = 1e-24
Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 4/174 (2%)
Frame = +2
Query: 92 PAQTQDPLYGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM 268
P Y +F +V + G I EL++ L S + FN ETC +M+++ D+
Sbjct: 117 PPNVDPEAYSWFQSVDSDHSGYISIKELKQALVNSN----WSSFNDETCLMMINLFDKTK 172
Query: 269 SGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 448
+G + F LW + W+ F +D D SG++ ELQ+AL+ MG+ LSPQ +
Sbjct: 173 TGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVS 232
Query: 449 RY---STNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMS 601
RY S N + D +I C +L+ LT++FR +DTA QG + ++DF+ S
Sbjct: 233 RYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 286
>ref|NP_999483.1| calpain small subunit 1 [Sus scrofa].
Length = 266
Score = 101 bits (251), Expect = 8e-22
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 4/162 (2%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLTQSGIAGG---YKPFNLETCRLMVSMLDRDMSGTMGFNEF 295
FA +AG D ++ A EL L + F ++TCR MV+++D D +G +GF EF
Sbjct: 103 FAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFEEF 162
Query: 296 KELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNGKI 472
K LW + W+ + FD DRSGT+ EL A GF L+ + I +RYS G +
Sbjct: 163 KYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRYSDEGGNM 222
Query: 473 TFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
FD++I+C V+L A+ +F+ D G + +++Q M
Sbjct: 223 DFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQLTM 264
>ref|XP_003127026.1| PREDICTED: calpain small subunit 2-like [Sus scrofa].
Length = 246
Score = 100 bits (249), Expect = 1e-21
Identities = 53/164 (32%), Positives = 96/164 (58%), Gaps = 6/164 (3%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLDRDMSGTMGFN 289
FA +AG D ++ A +L L + + +K F+L+TCR +VS++D D +G +GF
Sbjct: 83 FAQLAGPDMEVGATDLMNILNK--VLSKHKDLKSDGFSLDTCRSIVSVMDSDTTGKLGFE 140
Query: 290 EFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNG 466
EFK LW + W+ + +D D+SG++ +++ AL GF+L+ Q +I +RY+ +G
Sbjct: 141 EFKYLWNNIKKWQCIYKQYDRDQSGSLGSSQVRGALQAAGFQLNEQLYQTIIRRYAEEDG 200
Query: 467 KITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
++ F+ +I+C V+L A+ +FR D G++ +++Q M
Sbjct: 201 RMDFNSFISCLVRLDAMFRAFRSLDRDADGLIQVYIQEWLQLTM 244
>ref|NP_999336.1| calpain-3 [Sus scrofa].
Length = 821
Score = 99.4 bits (246), Expect = 3e-21
Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 6/174 (3%)
Frame = +2
Query: 95 AQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLD 259
++ Q F +AG D +I ADEL+ L + + +K F LE+CR M++++D
Sbjct: 648 SEEQQQFRNIFRQIAGDDMEICADELKNVLNR--VVNKHKDLKTEGFTLESCRSMIALMD 705
Query: 260 RDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNS 439
D SG + EF LW + W++ F +D+D+SGT++ E++ A+ GF L+ Q +
Sbjct: 706 TDGSGRLNLQEFHHLWKKIKSWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDI 765
Query: 440 IAKRYSTN-GKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVM 598
I RY+ I FD +I C V+L + +F D G++ +++Q M
Sbjct: 766 ITMRYADKYMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQLTM 819
>ref|XP_003362187.1| PREDICTED: programmed cell death protein 6-like [Sus scrofa].
Length = 121
Score = 94.0 bits (232), Expect = 1e-19
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Frame = +2
Query: 251 MLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQA 430
M DR+ + F+EF +W + W+ F ++D D SG +D EL++AL+ G+RLS Q
Sbjct: 1 MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQF 60
Query: 431 VNSIAKRYSTNGK--ITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
+ + +++ G+ I FDD+I C+ L+ LTD FRR DT Q G + Y+ ++ V S+
Sbjct: 61 HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 120
>ref|XP_001927273.1| PREDICTED: calpain-9 isoform 2 [Sus scrofa].
Length = 664
Score = 94.0 bits (232), Expect = 1e-19
Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLT---QSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEF 295
F VAG+D ++ A+EL+ L Q +K +L +C+ ++S++D +G + F+EF
Sbjct: 501 FKQVAGEDMEVTAEELKYVLNAVLQKKKDIKFKELSLISCKNIISLMDTSGNGKLEFSEF 560
Query: 296 KELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNGKI 472
K W L W F+ FD+D+SGT+ EL+ AL GF+LS + I RY+ ++
Sbjct: 561 KVFWDKLKKWMSLFLQFDADKSGTMSSYELRSALKAAGFQLSSPLLQLIVLRYADPELQL 620
Query: 473 TFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
FDD++ C V+L + F+ T + ++ ++FI M++
Sbjct: 621 GFDDFLNCLVRLENASRMFQALSTKNKEFIHLNINEFIVLTMNI 664
>ref|XP_001927250.1| PREDICTED: calpain-9 isoform 1 [Sus scrofa].
Length = 690
Score = 94.0 bits (232), Expect = 1e-19
Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Frame = +2
Query: 125 FAAVAGQDGQIDADELQRCLT---QSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEF 295
F VAG+D ++ A+EL+ L Q +K +L +C+ ++S++D +G + F+EF
Sbjct: 527 FKQVAGEDMEVTAEELKYVLNAVLQKKKDIKFKELSLISCKNIISLMDTSGNGKLEFSEF 586
Query: 296 KELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYS-TNGKI 472
K W L W F+ FD+D+SGT+ EL+ AL GF+LS + I RY+ ++
Sbjct: 587 KVFWDKLKKWMSLFLQFDADKSGTMSSYELRSALKAAGFQLSSPLLQLIVLRYADPELQL 646
Query: 473 TFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 604
FDD++ C V+L + F+ T + ++ ++FI M++
Sbjct: 647 GFDDFLNCLVRLENASRMFQALSTKNKEFIHLNINEFIVLTMNI 690
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,810,236
Number of extensions: 533131
Number of successful extensions: 1492
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 1477
Number of HSP's successfully gapped: 15
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002242
(1068 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 954 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 954 bits (481), Expect = 0.0
Identities = 488/489 (99%), Gaps = 1/489 (0%)
Strand = Plus / Minus
Query: 581 ttcattcagtgcgtcatgagtgtttaaatccagaggaagctgaatgaacataatcaacat 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74929124 ttcattcagtgcgtcatgagtgtttaaatccagaggaagctgaatgaacataatcaacat 74929065
Query: 641 tccaactggaactcctctttgctcttcgccttcagcagtcgtgtgcagacttacacagcc 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74929064 tccaactggaactcctctttgctcttcgccttcagcagtcgtgtgcagacttacacagcc 74929005
Query: 701 acttttccttaacagttgtaatggtttattgctttatgtacatctcaaatttttagtttt 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74929004 acttttccttaacagttgtaatggtttattgctttatgtacatctcaaatttttagtttt 74928945
Query: 761 gataataaattctttggaatgctattaagataagatctgtcctatttcaccctttagaac 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74928944 gataataaattctttggaatgctattaagataagatctgtcctatttcaccctttagaac 74928885
Query: 821 ttccttgagccattgttaatcatgccttattttcttgctaagcttcttttatgtaaattt 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74928884 ttccttgagccattgttaatcatgccttattttcttgctaagcttcttttatgtaaattt 74928825
Query: 881 aagtgcgcaaattgtctaaggcacagtatgtattttttcattgtaagatactaaaacctt 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74928824 aagtgcgcaaattgtctaaggcacagtatgtattttttcattgtaagatactaaaacctt 74928765
Query: 941 ttcatcacactacagctgttgtcttccctcttttacaagggcttttacgtggttttgaaa 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74928764 ttcatcacactacagctgttgtcttccctcttttacaagggcttttacgtggttttgaaa 74928705
Query: 1001 gctttttgtgcagaatattcttatcatgtaaatagttggggccctcatggatgca-aaaa 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 74928704 gctttttgtgcagaatattcttatcatgtaaatagttggggccctcatggatgcaaaaaa 74928645
Query: 1060 gtggtaatc 1068
|||||||||
Sbjct: 74928644 gtggtaatc 74928636
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 260 agagatatgtccggcacaatgggtttcaatgaattcaaagaactctgggctgtgctgaat 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74932679 agagatatgtccggcacaatgggtttcaatgaattcaaagaactctgggctgtgctgaat 74932620
Query: 320 ggctggaggcagcactttatcagttttgacagcgacaggagtgggacagtggatcctcaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74932619 ggctggaggcagcactttatcagttttgacagcgacaggagtgggacagtggatcctcaa 74932560
Query: 380 gaactgcagaaggccctgaccacaatggg 408
|||||||||||||||||||||||||||||
Sbjct: 74932559 gaactgcagaaggccctgaccacaatggg 74932531
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 407 ggatttagattgagtccccaggccgtgaattcaattgcaaaacgatacagcaccaatggc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74932286 ggatttagattgagtccccaggccgtgaattcaattgcaaaacgatacagcaccaatggc 74932227
Query: 467 aagatcacctttgatgattacatcgcctgctgtgtcaagctgcgtgctcttacag 521
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74932226 aagatcacctttgatgattacatcgcctgctgtgtcaagctgcgtgctcttacag 74932172
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 61 gtatggaggggctcccggaggacctgcgtttcccgcacaaactcaggatccgctctatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74943091 gtatggaggggctcccggaggacctgcgtttcccgcacaaactcaggatccgctctatgg 74943032
Query: 121 ttattttgctgctgtagctggacagg 146
||||||||||||||||||||||||||
Sbjct: 74943031 ttattttgctgctgtagctggacagg 74943006
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 144 aggatgggcagatagatgctgatgaattgcagagatgcctgacccagtcaggcattgctg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74940381 aggatgggcagatagatgctgatgaattgcagagatgcctgacccagtcaggcattgctg 74940322
Query: 204 gaggatacaaac 215
||||||||||||
Sbjct: 74940321 gaggatacaaac 74940310
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 516 ttacagacagctttcgaagacgggatactgctcagcaaggtgttgtgaatttcccatatg 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74931066 ttacagacagctttcgaagacgggatactgctcagcaaggtgttgtgaatttcccatatg 74931007
Query: 576 atgat 580
|||||
Sbjct: 74931006 atgat 74931002
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 1 gtgcagaatggcgtaccccgggcatcctggcgccggcggcggcggctactacccaggcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74944035 gtgcagaatggcgtaccccgggcatcctggcgccggcggcggcggctactacccaggcgg 74943976
Query: 61 g 61
|
Sbjct: 74943975 g 74943975
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 216 cttttaacctggagacctgccggcttatggtttcaatgctggat 259
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74934086 cttttaacctggagacctgccggcttatggtttcaatgctggat 74934043
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,638,845
Number of extensions: 237
Number of successful extensions: 237
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 8
Length of query: 1068
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1047
Effective length of database: 2,808,413,156
Effective search space: 2940408574332
Effective search space used: 2940408574332
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)