Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002246
(1597 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033268.1| calponin-3 [Bos taurus]. 668 0.0
Alignment gi|XP_002686086.1| PREDICTED: calponin 3-like [Bos taurus]. 666 0.0
Alignment gi|XP_001254702.1| PREDICTED: calponin 3 isoform 1 [Bos taurus]. 666 0.0
Alignment gi|NP_001039844.1| calponin-1 [Bos taurus]. 411 e-114
Alignment gi|NP_001030497.1| calponin-2 [Bos taurus]. 388 e-108
Alignment gi|NP_001039614.1| transgelin [Bos taurus]. 148 2e-35
Alignment gi|NP_001029671.1| transgelin-3 [Bos taurus]. 145 1e-34
Alignment gi|NP_001013617.1| transgelin-2 [Bos taurus]. 143 4e-34
Alignment gi|XP_002690168.1| PREDICTED: transgelin 2-like [Bos taurus]. 121 2e-27
Alignment gi|XP_582214.3| PREDICTED: transgelin 2 [Bos taurus]. 121 2e-27
>ref|NP_001033268.1| calponin-3 [Bos taurus].
Length = 329
Score = 668 bits (1724), Expect = 0.0
Identities = 326/329 (99%), Positives = 327/329 (99%)
Frame = +2
Query: 233 MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCE 412
MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIG +FQLGLKDGIILCE
Sbjct: 1 MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGANFQLGLKDGIILCE 60
Query: 413 LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 592
LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT
Sbjct: 61 LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 120
Query: 593 TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 772
TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT
Sbjct: 121 TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 180
Query: 773 AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 952
AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN
Sbjct: 181 AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 240
Query: 953 STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 1132
STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY
Sbjct: 241 STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 300
Query: 1133 QAEYPDEYHGEYPDDYPRDYQYGDQGIDY 1219
QAEYPDEYHGEY DDYPRDYQYGDQGIDY
Sbjct: 301 QAEYPDEYHGEYQDDYPRDYQYGDQGIDY 329
>ref|XP_002686086.1| PREDICTED: calponin 3-like [Bos taurus].
Length = 329
Score = 666 bits (1719), Expect = 0.0
Identities = 325/329 (98%), Positives = 326/329 (99%)
Frame = +2
Query: 233 MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCE 412
MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIG +FQLGLKDGIILCE
Sbjct: 1 MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGANFQLGLKDGIILCE 60
Query: 413 LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 592
LINKLQPG VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT
Sbjct: 61 LINKLQPGPVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 120
Query: 593 TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 772
TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT
Sbjct: 121 TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 180
Query: 773 AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 952
AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN
Sbjct: 181 AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 240
Query: 953 STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 1132
STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY
Sbjct: 241 STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 300
Query: 1133 QAEYPDEYHGEYPDDYPRDYQYGDQGIDY 1219
QAEYPDEYHGEY DDYPRDYQYGDQGIDY
Sbjct: 301 QAEYPDEYHGEYQDDYPRDYQYGDQGIDY 329
>ref|XP_001254702.1| PREDICTED: calponin 3 isoform 1 [Bos taurus].
Length = 329
Score = 666 bits (1719), Expect = 0.0
Identities = 325/329 (98%), Positives = 326/329 (99%)
Frame = +2
Query: 233 MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCE 412
MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIG +FQLGLKDGIILCE
Sbjct: 1 MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGANFQLGLKDGIILCE 60
Query: 413 LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 592
LINKLQPG VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT
Sbjct: 61 LINKLQPGPVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 120
Query: 593 TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 772
TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT
Sbjct: 121 TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 180
Query: 773 AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 952
AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN
Sbjct: 181 AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 240
Query: 953 STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 1132
STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY
Sbjct: 241 STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 300
Query: 1133 QAEYPDEYHGEYPDDYPRDYQYGDQGIDY 1219
QAEYPDEYHGEY DDYPRDYQYGDQGIDY
Sbjct: 301 QAEYPDEYHGEYQDDYPRDYQYGDQGIDY 329
>ref|NP_001039844.1| calponin-1 [Bos taurus].
Length = 297
Score = 411 bits (1056), Expect = e-114
Identities = 201/277 (72%), Positives = 231/277 (83%)
Frame = +2
Query: 239 HFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCELI 418
HFN+GP+YGLSAEVKNK+A KYDHQ E++LR WIE VTG IG +F GLKDGIILCE I
Sbjct: 5 HFNRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFI 64
Query: 419 NKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTL 598
NKLQPGSVKKVNES+ NW QLENIGNFIKAI YG+KPHDIFEANDLFEN N TQVQ+TL
Sbjct: 65 NKLQPGSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTL 124
Query: 599 VALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAY 778
+ALA +AKTKG +++GVKYAEKQ RRF+ KL+ G+++IGLQMGTNK ASQ GMTAY
Sbjct: 125 LALASMAKTKG--NKVNVGVKYAEKQERRFEPEKLREGRNIIGLQMGTNKFASQQGMTAY 182
Query: 779 GTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNST 958
GTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQAGM APGT+R I++ L ++ D
Sbjct: 183 GTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEHCDTLN 242
Query: 959 ISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEP 1069
+SLQMG+NK ASQ+GM+VYGL RQVYDPKYC P P
Sbjct: 243 VSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLTPEYP 279
>ref|NP_001030497.1| calponin-2 [Bos taurus].
Length = 309
Score = 388 bits (997), Expect = e-108
Identities = 196/306 (64%), Positives = 228/306 (74%)
Frame = +2
Query: 236 THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+S+G FQ GLKDGIILC L
Sbjct: 4 TQFNKGPSYGLSAEVKNRLQSKYDPQKEAELRSWIEGLTGLSVGPDFQKGLKDGIILCTL 63
Query: 416 INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
+NKLQPGSV K+N S NW QLEN+ NFIKA+ +YGM P D+FEANDLFE+GN+TQVQ +
Sbjct: 64 MNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNLTQVQVS 123
Query: 596 LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
L+ALAG AKTKG + +DIGVKY+EKQ R FD+ +KAGQ VIGLQMGTNKCASQ+GMTA
Sbjct: 124 LLALAGKAKTKGLQSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNKCASQSGMTA 183
Query: 776 YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
YGTRRHLYDPK P D +TISLQMGTNK ASQ GM APGTRR IYD KL DNS
Sbjct: 184 YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 243
Query: 956 TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
++SLQMG + A+Q G V+GLGRQ+YDPKYC P P G S+
Sbjct: 244 SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGPAADGAPAAAGDGPGPGEPSECP 300
Query: 1136 AEYPDE 1153
Y +E
Sbjct: 301 PYYQEE 306
>ref|NP_001039614.1| transgelin [Bos taurus].
Length = 201
Score = 148 bits (373), Expect = 2e-35
Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
NKGPSYG+S EV++KI KYD + EE L WI G +G FQ+ LK+G+IL
Sbjct: 3 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGPDVGRPDRGRLGFQVWLKNGVIL 62
Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
+L+N L P K V N S+ + Q+E + F+KA + YG+ D+F+ DLFE +
Sbjct: 63 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 122
Query: 575 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
+ VQ TL+AL LA TK + + +K A++ R F E +L+ G+ VIGLQMG+N
Sbjct: 123 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 182
Query: 746 KCASQAGMTAYGTRRHL 796
+ ASQAGMT YG R +
Sbjct: 183 RGASQAGMTGYGRPRQI 199
>ref|NP_001029671.1| transgelin-3 [Bos taurus].
Length = 199
Score = 145 bits (366), Expect = 1e-34
Identities = 88/203 (43%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWI-----EEVTGMSIGTS-FQLGLKDGIIL 406
N+GPSYGLS EV+ KI KYD E L +WI E++ G + FQ L DG +L
Sbjct: 3 NRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGTVL 62
Query: 407 CELINKLQPGS---VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
C+LIN L P + K++ES + + Q+E I F+KA + YG++ DIF+ DL+E +M
Sbjct: 63 CKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWEGKDM 122
Query: 578 TQVQTTLVALAGLAKTKG----------FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIG 727
VQ TL+AL +A TK FH + A++ R F E +L+ GQ+VIG
Sbjct: 123 AAVQRTLMALGSVAVTKDDGCYRGEPSWFH-------RKAQQNRRGFSEEQLRQGQNVIG 175
Query: 728 LQMGTNKCASQAGMTAYGTRRHL 796
LQMG+NK ASQAGMT YG R +
Sbjct: 176 LQMGSNKGASQAGMTGYGMPRQI 198
>ref|NP_001013617.1| transgelin-2 [Bos taurus].
Length = 199
Score = 143 bits (361), Expect = 4e-34
Identities = 84/196 (42%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
N+GP+YGLS EV+ KI +YD E+ L WI +G +FQ LKDG +L
Sbjct: 3 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 62
Query: 407 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
CELIN L P VKK+ S++ + Q+E I F++A + YG+ DIF+ DL+E NM
Sbjct: 63 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 122
Query: 578 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 748
VQ TL+ L GLA + F + K +++ R F + +L+ G++VIGLQMGTN+
Sbjct: 123 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRYFSDNQLQEGKNVIGLQMGTNR 182
Query: 749 CASQAGMTAYGTRRHL 796
ASQAGMT YG R +
Sbjct: 183 GASQAGMTGYGMPRQI 198
>ref|XP_002690168.1| PREDICTED: transgelin 2-like [Bos taurus].
Length = 199
Score = 121 bits (303), Expect = 2e-27
Identities = 75/190 (39%), Positives = 106/190 (55%), Gaps = 12/190 (6%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIG------TSFQLGLKDGIIL 406
N+GP+YGLS EV+ KI +YD E+ L WI + T+FQ LKDG +L
Sbjct: 3 NRGPAYGLSQEVQQKIDKQYDADLEQILIQWITTQCRKHVSRPQPGCTNFQNWLKDGTVL 62
Query: 407 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
CELIN L P VKK+ S+ + Q+ I F++A + YG+ +DI + DL+E NM
Sbjct: 63 CELINGLYPEGQAPVKKIQASTTAFKQMGQISQFLQAAERYGINTNDISQTVDLWEGKNM 122
Query: 578 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 748
VQ TL+ L L F + K +++ R F + +L+ G+++ GLQMGTN
Sbjct: 123 ACVQRTLMNLGRLVVAWDDGLFSGDPNWFTKKSKENPRYFPDNQLQEGKNLFGLQMGTNH 182
Query: 749 CASQAGMTAY 778
ASQAG+T Y
Sbjct: 183 GASQAGLTDY 192
>ref|XP_582214.3| PREDICTED: transgelin 2 [Bos taurus].
Length = 199
Score = 121 bits (303), Expect = 2e-27
Identities = 75/190 (39%), Positives = 106/190 (55%), Gaps = 12/190 (6%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIG------TSFQLGLKDGIIL 406
N+GP+YGLS EV+ KI +YD E+ L WI + T+FQ LKDG +L
Sbjct: 3 NRGPAYGLSQEVQQKIDKQYDADLEQILIQWITTQCRKHVSRPQPGCTNFQNWLKDGTVL 62
Query: 407 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
CELIN L P VKK+ S+ + Q+ I F++A + YG+ +DI + DL+E NM
Sbjct: 63 CELINGLYPEGQAPVKKIQASTTAFKQMGQISQFLQAAERYGINTNDISQTVDLWEGKNM 122
Query: 578 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 748
VQ TL+ L L F + K +++ R F + +L+ G+++ GLQMGTN
Sbjct: 123 ACVQRTLMNLGRLVVAWDDGLFSGDPNWFTKKSKENPRYFPDNQLQEGKNLFGLQMGTNH 182
Query: 749 CASQAGMTAY 778
ASQAG+T Y
Sbjct: 183 GASQAGLTDY 192
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,228,340
Number of extensions: 1544002
Number of successful extensions: 6581
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 6483
Number of HSP's successfully gapped: 18
Length of query: 532
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 425
Effective length of database: 14,140,958
Effective search space: 6009907150
Effective search space used: 6009907150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002246
(1597 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537063.2| PREDICTED: similar to calponin 3 [Canis familia... 630 0.0
Alignment gi|XP_542053.1| PREDICTED: similar to calponin 1, basic, smooth... 410 e-114
Alignment gi|XP_854646.1| PREDICTED: similar to calponin 2 isoform a isof... 390 e-108
Alignment gi|XP_868614.1| PREDICTED: similar to calponin 2 isoform a isof... 374 e-103
Alignment gi|XP_867647.1| PREDICTED: similar to calponin 1, basic, smooth... 348 1e-95
Alignment gi|XP_867658.1| PREDICTED: similar to calponin 1, basic, smooth... 339 5e-93
Alignment gi|XP_868617.1| PREDICTED: similar to calponin 2 isoform b isof... 322 6e-88
Alignment gi|XP_868615.1| PREDICTED: similar to calponin 2 isoform b isof... 218 1e-56
Alignment gi|XP_867636.1| PREDICTED: similar to calponin 1, basic, smooth... 167 3e-41
Alignment gi|XP_536561.2| PREDICTED: similar to transgelin isoform 1 [Can... 147 3e-35
>ref|XP_537063.2| PREDICTED: similar to calponin 3 [Canis familiaris].
Length = 360
Score = 630 bits (1626), Expect = 0.0
Identities = 308/311 (99%), Positives = 310/311 (99%)
Frame = +2
Query: 287 KIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCELINKLQPGSVKKVNESSL 466
KIASKYDHQAEEDLRNWIEEVTGMSIGT+FQLGLKDGIILCELINKLQPGSVKKVNESSL
Sbjct: 50 KIASKYDHQAEEDLRNWIEEVTGMSIGTNFQLGLKDGIILCELINKLQPGSVKKVNESSL 109
Query: 467 NWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTI 646
NWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTI
Sbjct: 110 NWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTI 169
Query: 647 DIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKP 826
DIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKP
Sbjct: 170 DIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKP 229
Query: 827 FDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGM 1006
FDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGM
Sbjct: 230 FDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGM 289
Query: 1007 SVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQAEYPDEYHGEYPDDYPR 1186
SVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQAEYP+EY GEYPDDYPR
Sbjct: 290 SVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQAEYPEEYPGEYPDDYPR 349
Query: 1187 DYQYGDQGIDY 1219
DYQYGDQGIDY
Sbjct: 350 DYQYGDQGIDY 360
>ref|XP_542053.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 1
[Canis familiaris].
Length = 297
Score = 410 bits (1053), Expect = e-114
Identities = 200/277 (72%), Positives = 231/277 (83%)
Frame = +2
Query: 239 HFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCELI 418
HFN+GP+YGLSAEVKNK+A KYDHQ E++LR WIE VTG IG +F GLKDGIILCE I
Sbjct: 5 HFNRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFI 64
Query: 419 NKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTL 598
NKLQPGSVKKVNES+ NW QLENIGNFIKAI YG+KPHDIFEANDLFEN N TQVQ+TL
Sbjct: 65 NKLQPGSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTL 124
Query: 599 VALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAY 778
+ALA +AKTKG +++GVKYAEKQ R+F+ KL+ G+++IGLQMGTNK ASQ GMTAY
Sbjct: 125 LALASMAKTKG--NKVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGTNKFASQQGMTAY 182
Query: 779 GTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNST 958
GTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQAGM APGT+R I++ L ++ D
Sbjct: 183 GTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEHCDTLN 242
Query: 959 ISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEP 1069
+SLQMG+NK ASQ+GM+VYGL RQVYDPKYC P P
Sbjct: 243 VSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLTPEYP 279
>ref|XP_854646.1| PREDICTED: similar to calponin 2 isoform a isoform 1 [Canis
familiaris].
Length = 309
Score = 390 bits (1003), Expect = e-108
Identities = 198/306 (64%), Positives = 232/306 (75%)
Frame = +2
Query: 236 THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+SIG FQ GLKDG+ILC L
Sbjct: 4 TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGVILCTL 63
Query: 416 INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
+NKLQPGSV K+N S NW QLEN+ FIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64 MNKLQPGSVPKINRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123
Query: 596 LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
L+ALAG AKTKG + +DIGVKY+EKQ R FD+ +KAG VIGLQMGTNKCASQ+GMTA
Sbjct: 124 LLALAGKAKTKGLQSGVDIGVKYSEKQERNFDDATMKAGHCVIGLQMGTNKCASQSGMTA 183
Query: 776 YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
YGTRRHLYDPK P D +TISLQMGTNK ASQ GM APGTRR IYD KL DNS
Sbjct: 184 YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 243
Query: 956 TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
++SLQMG + A+Q G V+GLGRQ+YDPKYC P PV +G+ G G + ++
Sbjct: 244 SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGPVA-DGAAGAAGGGPDPGEAPEC 299
Query: 1136 AEYPDE 1153
YP E
Sbjct: 300 TPYPQE 305
>ref|XP_868614.1| PREDICTED: similar to calponin 2 isoform a isoform 2 [Canis
familiaris].
Length = 300
Score = 374 bits (961), Expect = e-103
Identities = 193/306 (63%), Positives = 225/306 (73%)
Frame = +2
Query: 236 THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+SIG FQ GLKDG+ILC L
Sbjct: 4 TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGVILCTL 63
Query: 416 INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
+NKLQPGSV K+N S NW QLEN+ FIKA+ +YGM P D+FEANDLFE+GNMTQVQ
Sbjct: 64 MNKLQPGSVPKINRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGNMTQVQ-- 121
Query: 596 LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
AKTKG + +DIGVKY+EKQ R FD+ +KAG VIGLQMGTNKCASQ+GMTA
Sbjct: 122 -------AKTKGLQSGVDIGVKYSEKQERNFDDATMKAGHCVIGLQMGTNKCASQSGMTA 174
Query: 776 YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
YGTRRHLYDPK P D +TISLQMGTNK ASQ GM APGTRR IYD KL DNS
Sbjct: 175 YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 234
Query: 956 TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
++SLQMG + A+Q G V+GLGRQ+YDPKYC P PV +G+ G G + ++
Sbjct: 235 SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGPVA-DGAAGAAGGGPDPGEAPEC 290
Query: 1136 AEYPDE 1153
YP E
Sbjct: 291 TPYPQE 296
>ref|XP_867647.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 3
[Canis familiaris].
Length = 258
Score = 348 bits (892), Expect = 1e-95
Identities = 171/235 (72%), Positives = 194/235 (82%)
Frame = +2
Query: 239 HFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCELI 418
HFN+GP+YGLSAEVKNK+A KYDHQ E++LR WIE VTG IG +F GLKDGIILCE I
Sbjct: 5 HFNRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFI 64
Query: 419 NKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTL 598
NKLQPGSVKKVNES+ NW QLENIGNFIKAI YG+KPHDIFEANDLFEN N TQVQ+TL
Sbjct: 65 NKLQPGSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTL 124
Query: 599 VALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAY 778
+ALA +AKTKG +++GVKYAEKQ R+F+ KL+ G+++IGLQMGTNK ASQ GMTAY
Sbjct: 125 LALASMAKTKG--NKVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGTNKFASQQGMTAY 182
Query: 779 GTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQP 943
GTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQ GM G R +YD K L P
Sbjct: 183 GTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQRGMTVYGLPRQVYDPKYCLTP 237
>ref|XP_867658.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 4
[Canis familiaris].
Length = 247
Score = 339 bits (869), Expect = 5e-93
Identities = 167/229 (72%), Positives = 192/229 (83%)
Frame = +2
Query: 383 GLKDGIILCELINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLF 562
GLKDGIILCE INKLQPGSVKKVNES+ NW QLENIGNFIKAI YG+KPHDIFEANDLF
Sbjct: 3 GLKDGIILCEFINKLQPGSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLF 62
Query: 563 ENGNMTQVQTTLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGT 742
EN N TQVQ+TL+ALA +AKTKG +++GVKYAEKQ R+F+ KL+ G+++IGLQMGT
Sbjct: 63 ENTNHTQVQSTLLALASMAKTKG--NKVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGT 120
Query: 743 NKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYD 922
NK ASQ GMTAYGTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQAGM APGT+R I++
Sbjct: 121 NKFASQQGMTAYGTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQIFE 180
Query: 923 QKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEP 1069
L ++ D +SLQMG+NK ASQ+GM+VYGL RQVYDPKYC P P
Sbjct: 181 PGLGMEHCDTLNVSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLTPEYP 229
>ref|XP_868617.1| PREDICTED: similar to calponin 2 isoform b isoform 4 [Canis
familiaris].
Length = 270
Score = 322 bits (825), Expect = 6e-88
Identities = 173/306 (56%), Positives = 203/306 (66%)
Frame = +2
Query: 236 THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+SIG FQ GLKDG+ILC L
Sbjct: 4 TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGVILCTL 63
Query: 416 INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
+NKLQPGSV K+N S NW QLEN+ FIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64 MNKLQPGSVPKINRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123
Query: 596 LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
L+ALAG +MGTNKCASQ+GMTA
Sbjct: 124 LLALAG---------------------------------------KMGTNKCASQSGMTA 144
Query: 776 YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
YGTRRHLYDPK P D +TISLQMGTNK ASQ GM APGTRR IYD KL DNS
Sbjct: 145 YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 204
Query: 956 TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
++SLQMG + A+Q G V+GLGRQ+YDPKYC P PV +G+ G G + ++
Sbjct: 205 SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGPVA-DGAAGAAGGGPDPGEAPEC 260
Query: 1136 AEYPDE 1153
YP E
Sbjct: 261 TPYPQE 266
>ref|XP_868615.1| PREDICTED: similar to calponin 2 isoform b isoform 3 [Canis
familiaris].
Length = 221
Score = 218 bits (555), Expect = 1e-56
Identities = 120/231 (51%), Positives = 146/231 (63%)
Frame = +2
Query: 236 THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+SIG FQ GLKDG+ILC L
Sbjct: 4 TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGVILCTL 63
Query: 416 INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
+NKLQPGSV K+N S NW QLEN+ FIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64 MNKLQPGSVPKINRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123
Query: 596 LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
L+ALAG + GMTA
Sbjct: 124 LLALAG------------------------------------------------KVGMTA 135
Query: 776 YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQK 928
GTRRH+YD K+ TDK D +++SLQMG +GA+Q+G + G R IYD K
Sbjct: 136 PGTRRHIYDTKLGTDK-CDNSSMSLQMGYTQGANQSGQVF-GLGRQIYDPK 184
Score = 83.2 bits (204), Expect = 7e-16
Identities = 46/94 (48%), Positives = 58/94 (61%)
Frame = +2
Query: 872 ASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYC 1051
A + GM APGTRR IYD KL DNS++SLQMG + A+Q G V+GLGRQ+YDPKYC
Sbjct: 128 AGKVGMTAPGTRRHIYDTKLGTDKCDNSSMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC 186
Query: 1052 AAPTEPVIHNGSQGTGTNGSEISDSDYQAEYPDE 1153
P PV +G+ G G + ++ YP E
Sbjct: 187 --PQGPVA-DGAAGAAGGGPDPGEAPECTPYPQE 217
>ref|XP_867636.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 2
[Canis familiaris].
Length = 130
Score = 167 bits (423), Expect = 3e-41
Identities = 80/112 (71%), Positives = 91/112 (81%)
Frame = +2
Query: 734 MGTNKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRD 913
MGTNK ASQ GMTAYGTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQAGM APGT+R
Sbjct: 1 MGTNKFASQQGMTAYGTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQ 60
Query: 914 IYDQKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEP 1069
I++ L ++ D +SLQMG+NK ASQ+GM+VYGL RQVYDPKYC P P
Sbjct: 61 IFEPGLGMEHCDTLNVSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLTPEYP 112
Score = 80.5 bits (197), Expect = 4e-15
Identities = 42/77 (54%), Positives = 52/77 (67%)
Frame = +2
Query: 713 QSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGML 892
Q+ I LQMGTNK ASQAGMTA GT+R +++P + + D +SLQMG+NKGASQ GM
Sbjct: 34 QATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEH-CDTLNVSLQMGSNKGASQRGMT 92
Query: 893 APGTRRDIYDQKLTLQP 943
G R +YD K L P
Sbjct: 93 VYGLPRQVYDPKYCLTP 109
>ref|XP_536561.2| PREDICTED: similar to transgelin isoform 1 [Canis familiaris].
Length = 201
Score = 147 bits (371), Expect = 3e-35
Identities = 84/197 (42%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
NKGPSYG+S EV++KI KYD + EE L WI G +G FQ+ LK+G+IL
Sbjct: 3 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGSDVGRPDRGRLGFQVWLKNGVIL 62
Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
+L+N L P K V N S+ + Q+E + F+KA + YG+ D+F+ DL+E +
Sbjct: 63 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLYEGKD 122
Query: 575 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
+ VQ TL+AL LA TK + + +K A++ R F E +L+ G+ VIGLQMG+N
Sbjct: 123 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 182
Query: 746 KCASQAGMTAYGTRRHL 796
+ ASQAGMT YG R +
Sbjct: 183 RGASQAGMTGYGRPRQI 199
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,972,710
Number of extensions: 1596605
Number of successful extensions: 6800
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 6682
Number of HSP's successfully gapped: 23
Length of query: 532
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 424
Effective length of database: 15,274,216
Effective search space: 6476267584
Effective search space used: 6476267584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002246
(1597 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001830.1| calponin-3 [Homo sapiens]. 665 0.0
Alignment gi|NP_001290.2| calponin-1 [Homo sapiens]. 412 e-115
Alignment gi|NP_004359.1| calponin-2 isoform a [Homo sapiens]. 393 e-109
Alignment gi|NP_958434.1| calponin-2 isoform b [Homo sapiens]. 322 5e-88
Alignment gi|NP_001001522.1| transgelin [Homo sapiens]. 148 2e-35
Alignment gi|NP_003177.2| transgelin [Homo sapiens]. 148 2e-35
Alignment gi|NP_037391.2| transgelin-3 [Homo sapiens]. 145 8e-35
Alignment gi|NP_001008274.1| transgelin-3 [Homo sapiens]. 145 8e-35
Alignment gi|NP_001008273.1| transgelin-3 [Homo sapiens]. 145 8e-35
Alignment gi|NP_003555.1| transgelin-2 [Homo sapiens]. 144 2e-34
>ref|NP_001830.1| calponin-3 [Homo sapiens].
Length = 329
Score = 665 bits (1717), Expect = 0.0
Identities = 325/329 (98%), Positives = 326/329 (99%)
Frame = +2
Query: 233 MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCE 412
MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIG +FQLGLKDGIILCE
Sbjct: 1 MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGPNFQLGLKDGIILCE 60
Query: 413 LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 592
LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT
Sbjct: 61 LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 120
Query: 593 TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 772
TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT
Sbjct: 121 TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 180
Query: 773 AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 952
AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN
Sbjct: 181 AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 240
Query: 953 STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 1132
STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY
Sbjct: 241 STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 300
Query: 1133 QAEYPDEYHGEYPDDYPRDYQYGDQGIDY 1219
QAEYPDEYHGEY DDYPRDYQY DQGIDY
Sbjct: 301 QAEYPDEYHGEYQDDYPRDYQYSDQGIDY 329
>ref|NP_001290.2| calponin-1 [Homo sapiens].
Length = 297
Score = 412 bits (1060), Expect = e-115
Identities = 200/277 (72%), Positives = 232/277 (83%)
Frame = +2
Query: 239 HFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCELI 418
HFN+GP+YGLSAEVKNK+A KYDHQ E++LR WIE VTG IG +F GLKDGIILCE I
Sbjct: 5 HFNRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFI 64
Query: 419 NKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTL 598
NKLQPGSVKK+NES+ NW QLENIGNFIKAI YG+KPHDIFEANDLFEN N TQVQ+TL
Sbjct: 65 NKLQPGSVKKINESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTL 124
Query: 599 VALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAY 778
+ALA +AKTKG +++GVKYAEKQ R+F+ GKL+ G+++IGLQMGTNK ASQ GMTAY
Sbjct: 125 LALASMAKTKG--NKVNVGVKYAEKQERKFEPGKLREGRNIIGLQMGTNKFASQQGMTAY 182
Query: 779 GTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNST 958
GTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQAGM APGT+R I++ L ++ D
Sbjct: 183 GTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEHCDTLN 242
Query: 959 ISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEP 1069
+SLQMG+NK ASQ+GM+VYGL RQVYDPKYC P P
Sbjct: 243 VSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLTPEYP 279
>ref|NP_004359.1| calponin-2 isoform a [Homo sapiens].
Length = 309
Score = 393 bits (1009), Expect = e-109
Identities = 202/310 (65%), Positives = 230/310 (74%)
Frame = +2
Query: 236 THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
T FNKGPSYGLSAEVKN++ SKYD Q E +LR WIE +TG+SIG FQ GLKDG ILC L
Sbjct: 4 TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIGPDFQKGLKDGTILCTL 63
Query: 416 INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
+NKLQPGSV K+N S NW QLEN+ NFIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64 MNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123
Query: 596 LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
L+ALAG AKTKG + +DIGVKY+EKQ R FD+ +KAGQ VIGLQMGTNKCASQ+GMTA
Sbjct: 124 LLALAGKAKTKGLQSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNKCASQSGMTA 183
Query: 776 YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
YGTRRHLYDPK P D +TISLQMGTNK ASQ GM APGTRR IYD KL DNS
Sbjct: 184 YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 243
Query: 956 TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
++SLQMG + A+Q G V+GLGRQ+YDPKYC P V GTG + D
Sbjct: 244 SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGTVADGAPSGTG----DCPDPGEV 296
Query: 1136 AEYPDEYHGE 1165
EYP Y E
Sbjct: 297 PEYPPYYQEE 306
>ref|NP_958434.1| calponin-2 isoform b [Homo sapiens].
Length = 270
Score = 322 bits (826), Expect = 5e-88
Identities = 176/310 (56%), Positives = 200/310 (64%)
Frame = +2
Query: 236 THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
T FNKGPSYGLSAEVKN++ SKYD Q E +LR WIE +TG+SIG FQ GLKDG ILC L
Sbjct: 4 TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIGPDFQKGLKDGTILCTL 63
Query: 416 INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
+NKLQPGSV K+N S NW QLEN+ NFIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64 MNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123
Query: 596 LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
L+ALAG +MGTNKCASQ+GMTA
Sbjct: 124 LLALAG---------------------------------------KMGTNKCASQSGMTA 144
Query: 776 YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
YGTRRHLYDPK P D +TISLQMGTNK ASQ GM APGTRR IYD KL DNS
Sbjct: 145 YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 204
Query: 956 TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
++SLQMG + A+Q G V+GLGRQ+YDPKYC P V GTG + D
Sbjct: 205 SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGTVADGAPSGTG----DCPDPGEV 257
Query: 1136 AEYPDEYHGE 1165
EYP Y E
Sbjct: 258 PEYPPYYQEE 267
>ref|NP_001001522.1| transgelin [Homo sapiens].
Length = 201
Score = 148 bits (373), Expect = 2e-35
Identities = 86/197 (43%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
NKGPSYG+S EV++KI KYD + EE L WI G +G FQ+ LK+G+IL
Sbjct: 3 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 62
Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
+L+N L P K V N S+ + Q+E + F+KA + YG+ D+F+ DLFE +
Sbjct: 63 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKD 122
Query: 575 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
M VQ TL+AL LA TK + + +K A++ R F E +L+ G+ VIGLQMG+N
Sbjct: 123 MAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 182
Query: 746 KCASQAGMTAYGTRRHL 796
+ ASQAGMT YG R +
Sbjct: 183 RGASQAGMTGYGRPRQI 199
>ref|NP_003177.2| transgelin [Homo sapiens].
Length = 201
Score = 148 bits (373), Expect = 2e-35
Identities = 86/197 (43%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
NKGPSYG+S EV++KI KYD + EE L WI G +G FQ+ LK+G+IL
Sbjct: 3 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 62
Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
+L+N L P K V N S+ + Q+E + F+KA + YG+ D+F+ DLFE +
Sbjct: 63 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKD 122
Query: 575 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
M VQ TL+AL LA TK + + +K A++ R F E +L+ G+ VIGLQMG+N
Sbjct: 123 MAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 182
Query: 746 KCASQAGMTAYGTRRHL 796
+ ASQAGMT YG R +
Sbjct: 183 RGASQAGMTGYGRPRQI 199
>ref|NP_037391.2| transgelin-3 [Homo sapiens].
Length = 199
Score = 145 bits (367), Expect = 8e-35
Identities = 88/203 (43%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWI-----EEVTGMSIGTS-FQLGLKDGIIL 406
N+GPSYGLS EV+ KI KYD E L +WI E++ G + FQ L DG +L
Sbjct: 3 NRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGTVL 62
Query: 407 CELINKLQPGS---VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
C+LIN L P + K++ES + + Q+E I F+KA + YG++ DIF+ DL+E +M
Sbjct: 63 CKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDM 122
Query: 578 TQVQTTLVALAGLAKTKG----------FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIG 727
VQ TL+AL +A TK FH + A++ R F E +L+ GQ+VIG
Sbjct: 123 AAVQRTLMALGSVAVTKDDGCYRGEPSWFH-------RKAQQNRRGFSEEQLRQGQNVIG 175
Query: 728 LQMGTNKCASQAGMTAYGTRRHL 796
LQMG+NK ASQAGMT YG R +
Sbjct: 176 LQMGSNKGASQAGMTGYGMPRQI 198
>ref|NP_001008274.1| transgelin-3 [Homo sapiens].
Length = 199
Score = 145 bits (367), Expect = 8e-35
Identities = 88/203 (43%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWI-----EEVTGMSIGTS-FQLGLKDGIIL 406
N+GPSYGLS EV+ KI KYD E L +WI E++ G + FQ L DG +L
Sbjct: 3 NRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGTVL 62
Query: 407 CELINKLQPGS---VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
C+LIN L P + K++ES + + Q+E I F+KA + YG++ DIF+ DL+E +M
Sbjct: 63 CKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDM 122
Query: 578 TQVQTTLVALAGLAKTKG----------FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIG 727
VQ TL+AL +A TK FH + A++ R F E +L+ GQ+VIG
Sbjct: 123 AAVQRTLMALGSVAVTKDDGCYRGEPSWFH-------RKAQQNRRGFSEEQLRQGQNVIG 175
Query: 728 LQMGTNKCASQAGMTAYGTRRHL 796
LQMG+NK ASQAGMT YG R +
Sbjct: 176 LQMGSNKGASQAGMTGYGMPRQI 198
>ref|NP_001008273.1| transgelin-3 [Homo sapiens].
Length = 199
Score = 145 bits (367), Expect = 8e-35
Identities = 88/203 (43%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWI-----EEVTGMSIGTS-FQLGLKDGIIL 406
N+GPSYGLS EV+ KI KYD E L +WI E++ G + FQ L DG +L
Sbjct: 3 NRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGTVL 62
Query: 407 CELINKLQPGS---VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
C+LIN L P + K++ES + + Q+E I F+KA + YG++ DIF+ DL+E +M
Sbjct: 63 CKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDM 122
Query: 578 TQVQTTLVALAGLAKTKG----------FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIG 727
VQ TL+AL +A TK FH + A++ R F E +L+ GQ+VIG
Sbjct: 123 AAVQRTLMALGSVAVTKDDGCYRGEPSWFH-------RKAQQNRRGFSEEQLRQGQNVIG 175
Query: 728 LQMGTNKCASQAGMTAYGTRRHL 796
LQMG+NK ASQAGMT YG R +
Sbjct: 176 LQMGSNKGASQAGMTGYGMPRQI 198
>ref|NP_003555.1| transgelin-2 [Homo sapiens].
Length = 199
Score = 144 bits (364), Expect = 2e-34
Identities = 84/196 (42%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
N+GP+YGLS EV+ KI +YD E+ L WI +G +FQ LKDG +L
Sbjct: 3 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 62
Query: 407 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
CELIN L P VKK+ S++ + Q+E I F++A + YG+ DIF+ DL+E NM
Sbjct: 63 CELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 122
Query: 578 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 748
VQ TL+ L GLA + F + K +++ R F + +L+ G++VIGLQMGTN+
Sbjct: 123 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 182
Query: 749 CASQAGMTAYGTRRHL 796
ASQAGMT YG R +
Sbjct: 183 GASQAGMTGYGMPRQI 198
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,585,721
Number of extensions: 1565469
Number of successful extensions: 6320
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 6222
Number of HSP's successfully gapped: 19
Length of query: 532
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 425
Effective length of database: 14,770,016
Effective search space: 6277256800
Effective search space used: 6277256800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002246
(1597 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082320.1| calponin-3 [Mus musculus]. 661 0.0
Alignment gi|NP_034052.3| calponin-1 [Mus musculus]. 410 e-114
Alignment gi|NP_031751.1| calponin-2 [Mus musculus]. 389 e-108
Alignment gi|NP_062728.1| transgelin-3 [Mus musculus]. 145 7e-35
Alignment gi|NP_848713.1| transgelin-2 [Mus musculus]. 145 7e-35
Alignment gi|NP_035656.1| transgelin [Mus musculus]. 145 1e-34
Alignment gi|NP_001001980.2| LIM and calponin homology domains-containing... 70 5e-12
Alignment gi|NP_963287.2| LIM domain only 7 [Mus musculus]. 69 1e-11
Alignment gi|NP_001028611.2| leucine-rich repeat and calponin homology do... 57 5e-08
Alignment gi|NP_001106989.1| rho guanine nucleotide exchange factor 7 iso... 54 3e-07
>ref|NP_082320.1| calponin-3 [Mus musculus].
Length = 330
Score = 661 bits (1706), Expect = 0.0
Identities = 324/330 (98%), Positives = 327/330 (99%), Gaps = 1/330 (0%)
Frame = +2
Query: 233 MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCE 412
MTHFNKGPSYGLSAEVKNKIASKYD QAEEDLRNWIEEVTG+ IGT+FQLGLKDGIILCE
Sbjct: 1 MTHFNKGPSYGLSAEVKNKIASKYDQQAEEDLRNWIEEVTGLGIGTNFQLGLKDGIILCE 60
Query: 413 LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 592
LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT
Sbjct: 61 LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 120
Query: 593 TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 772
TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT
Sbjct: 121 TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 180
Query: 773 AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 952
AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN
Sbjct: 181 AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 240
Query: 953 STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 1132
STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY
Sbjct: 241 STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 300
Query: 1133 QAEYPDEYHGEYPDDYPRDYQYG-DQGIDY 1219
QAEYPDEYHGEYPDDYPR+YQYG DQGIDY
Sbjct: 301 QAEYPDEYHGEYPDDYPREYQYGDDQGIDY 330
>ref|NP_034052.3| calponin-1 [Mus musculus].
Length = 297
Score = 410 bits (1054), Expect = e-114
Identities = 201/277 (72%), Positives = 231/277 (83%)
Frame = +2
Query: 239 HFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCELI 418
HFN+GP+YGLSAEVKNK+A KYDHQ E++LR WIE VTG IG +F GLKDGIILCE I
Sbjct: 5 HFNRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFI 64
Query: 419 NKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTL 598
NKLQPGSVKKVNES+ NW QLENIGNFIKAI YG+KPHDIFEANDLFEN N TQVQ+TL
Sbjct: 65 NKLQPGSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTL 124
Query: 599 VALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAY 778
+ALA +AKTKG +++GVKYAEKQ RRF+ KL+ G+++IGLQMGTNK ASQ GMTAY
Sbjct: 125 LALASMAKTKG--NKVNVGVKYAEKQERRFEPEKLREGRNIIGLQMGTNKFASQQGMTAY 182
Query: 779 GTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNST 958
GTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQAGM APGT+R I++ L ++ D
Sbjct: 183 GTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEHCDTLN 242
Query: 959 ISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEP 1069
+SLQMG+NK ASQ+GM+VYGL RQVYDPKYC P P
Sbjct: 243 VSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLNPEYP 279
>ref|NP_031751.1| calponin-2 [Mus musculus].
Length = 305
Score = 389 bits (999), Expect = e-108
Identities = 198/305 (64%), Positives = 230/305 (75%)
Frame = +2
Query: 236 THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+SIG FQ GLKDG+ILC L
Sbjct: 4 TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGVILCTL 63
Query: 416 INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
+NKLQPGSV K+N S NW QLEN+ NFIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64 MNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123
Query: 596 LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
L+ALAG AKTKG + +DIGVKY+EKQ R FD+ +KAGQ VIGLQMGTNKCASQ+GMTA
Sbjct: 124 LLALAGKAKTKGLQSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNKCASQSGMTA 183
Query: 776 YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
YGTRRHLYDPK P D TISLQMGTNK ASQ GM APGTRR IYD KL DNS
Sbjct: 184 YGTRRHLYDPKNHILPPMDHCTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 243
Query: 956 TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
++SLQMG + A+Q G V+GLGRQ+YDPKYC QG+ +G+ D Q
Sbjct: 244 SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC-----------PQGSAADGAPAGDG--Q 289
Query: 1136 AEYPD 1150
E P+
Sbjct: 290 GEAPE 294
>ref|NP_062728.1| transgelin-3 [Mus musculus].
Length = 199
Score = 145 bits (367), Expect = 7e-35
Identities = 88/203 (43%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWI-----EEVTGMSIGTS-FQLGLKDGIIL 406
N+GPSYGLS EV+ KI KYD E L +WI E++ G + FQ L DG +L
Sbjct: 3 NRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGTVL 62
Query: 407 CELINKLQPGS---VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
C+LIN L P + K++ES + + Q+E I F+KA + YG++ DIF+ DL+E +M
Sbjct: 63 CKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEVYGVRTTDIFQTVDLWEGKDM 122
Query: 578 TQVQTTLVALAGLAKTKG----------FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIG 727
VQ TL+AL +A TK FH + A++ R F E +L+ GQ+VIG
Sbjct: 123 AAVQRTLMALGSVAVTKDDGCYRGEPSWFH-------RKAQQNRRGFSEEQLRQGQNVIG 175
Query: 728 LQMGTNKCASQAGMTAYGTRRHL 796
LQMG+NK ASQAGMT YG R +
Sbjct: 176 LQMGSNKGASQAGMTGYGMPRQI 198
>ref|NP_848713.1| transgelin-2 [Mus musculus].
Length = 199
Score = 145 bits (367), Expect = 7e-35
Identities = 85/196 (43%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
N+GPSYGLS EV+ KI +YD E+ L WI +G +FQ LKDG +L
Sbjct: 3 NRGPSYGLSREVQQKIEKQYDADLEQILIQWITTQCREDVGQPQPGRENFQKWLKDGTVL 62
Query: 407 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
C+LIN L P VKK+ SS+ + Q+E I F++A + YG+ DIF+ DL+E NM
Sbjct: 63 CKLINSLYPEGQAPVKKIQASSMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 122
Query: 578 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 748
VQ TL+ L GLA + F + K +++ R F + +L+ G++VIGLQMGTN+
Sbjct: 123 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 182
Query: 749 CASQAGMTAYGTRRHL 796
ASQAGMT YG R +
Sbjct: 183 GASQAGMTGYGMPRQI 198
>ref|NP_035656.1| transgelin [Mus musculus].
Length = 201
Score = 145 bits (365), Expect = 1e-34
Identities = 84/197 (42%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
NKGPSYG+S EV++KI KYD + EE L WI G +G FQ+ LK+G+IL
Sbjct: 3 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVIL 62
Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
+L+N L P K V N S+ + Q+E + F+KA + YG+ D+F+ DL+E +
Sbjct: 63 SKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKD 122
Query: 575 MTQVQTTLVALAGLAKTK---GFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
M VQ TL+AL LA TK + + +K A++ R F + +L+ G+ VIGLQMG+N
Sbjct: 123 MAAVQRTLMALGSLAVTKNDGNYRGDPNWFMKKAQEHKRDFTDSQLQEGKHVIGLQMGSN 182
Query: 746 KCASQAGMTAYGTRRHL 796
+ ASQAGMT YG R +
Sbjct: 183 RGASQAGMTGYGRPRQI 199
>ref|NP_001001980.2| LIM and calponin homology domains-containing protein 1 [Mus
musculus].
Length = 1057
Score = 70.1 bits (170), Expect = 5e-12
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = +2
Query: 323 DLRNWIEEVTGMSIGTS-FQLGLKDGIILCELINKLQPGSVKKVNESSLNWPQLENIGNF 499
+ + WIE+VTG S G F+ GL++GI+LCEL+N ++PG VKK+N L+N F
Sbjct: 26 EAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNTILF 85
Query: 500 IKAIQAYGMKPHDIFEANDLFENGNMTQVQ 589
++ + G+K +F+ +DL + N V+
Sbjct: 86 LRGCKELGLKESQLFDPSDLQDTSNRVTVK 115
>ref|NP_963287.2| LIM domain only 7 [Mus musculus].
Length = 1699
Score = 68.6 bits (166), Expect = 1e-11
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = +2
Query: 323 DLRNWIEEVTGMSIGTS-FQLGLKDGIILCELINKLQPGSVKKVNESSLNWPQLENIGNF 499
+ + W+E VT + T+ F+ L++G++LC+LINKL+PG VKK+N S L+NI F
Sbjct: 17 EAQRWVEAVTEKNFETTDFRASLENGVLLCDLINKLKPGVVKKINRLSTPIAGLDNINVF 76
Query: 500 IKAIQAYGMKPHDIFEANDLFENGNMTQVQ 589
++A + G+K +F DL + N V+
Sbjct: 77 LRACEQIGLKEAQLFHPGDLQDLSNRVTVK 106
>ref|NP_001028611.2| leucine-rich repeat and calponin homology domain-containing protein 1
[Mus musculus].
Length = 709
Score = 56.6 bits (135), Expect = 5e-08
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 20/194 (10%)
Frame = +2
Query: 119 ERAPSISGCGHSSGP-------GAWKPSARNLRTRAQPLPAA-RIIMTHFNKGPSYGL-S 271
E +PS+S + + P G+W P +A+ P +++ H P L S
Sbjct: 516 ENSPSVSPTANITAPFGLKPRSGSWCPEEVQGSLQAESSPRRPQLLSRHVFLRPQRNLES 575
Query: 272 AEVKNKIASKYDHQAEE-----DLRNWIEEVTGMSIGTSFQLGLKDGIILCELINKLQPG 436
+ + I K + EE LR IE +++ L DG++LC L N ++P
Sbjct: 576 IDPQFTIRRKMEQMREEKELVEQLRESIEMRLKVTLHEDLGAALMDGVVLCHLANHVRPR 635
Query: 437 SVKKVNESSLNWPQL------ENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTL 598
SV ++ S P+L N+ NF++A + G+ + + + E + +V TT+
Sbjct: 636 SVASIHVPSPAVPKLSMAKCRRNVENFLEACRKLGVPEEKLCLPHHILEEKGLVKVGTTV 695
Query: 599 VALAGLAKTKGFHT 640
AL + TK T
Sbjct: 696 QALLDVTVTKALFT 709
>ref|NP_001106989.1| rho guanine nucleotide exchange factor 7 isoform a [Mus musculus].
Length = 782
Score = 53.9 bits (128), Expect = 3e-07
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +2
Query: 377 QLGLKDGIILCELINKLQPGSVKKVNESSLNWPQ-LENIGNFIKAIQAYGMKPHDIFEAN 553
Q LKDG++LC L+ +L PG+++KV N + L NI F++A A + F+AN
Sbjct: 32 QASLKDGVVLCRLLERLLPGTIEKVYPEPRNESECLSNIREFLRACGA--SLRLETFDAN 89
Query: 554 DLFENGNMTQVQTTLVAL 607
DL++ N +V ++LV L
Sbjct: 90 DLYQGQNFNKVLSSLVTL 107
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,661,269
Number of extensions: 1310440
Number of successful extensions: 5256
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 5192
Number of HSP's successfully gapped: 12
Length of query: 532
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 426
Effective length of database: 12,433,743
Effective search space: 5296774518
Effective search space used: 5296774518
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002246
(1597 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125950.1| PREDICTED: calponin-3 [Sus scrofa]. 805 0.0
Alignment gi|NP_999043.1| calponin-1 [Sus scrofa]. 410 e-114
Alignment gi|XP_003354007.1| PREDICTED: calponin-2 isoform 1 [Sus scrofa]. 391 e-109
Alignment gi|XP_003354008.1| PREDICTED: calponin-2 isoform 2 [Sus scrofa]. 320 1e-87
Alignment gi|XP_003357356.1| PREDICTED: transgelin [Sus scrofa]. 147 1e-35
Alignment gi|XP_003129930.1| PREDICTED: transgelin isoform 2 [Sus scrofa]. 147 1e-35
Alignment gi|XP_003129929.1| PREDICTED: transgelin isoform 1 [Sus scrofa]. 147 1e-35
Alignment gi|XP_003361052.1| PREDICTED: transgelin-3-like isoform 2 [Sus ... 147 2e-35
Alignment gi|XP_003361051.1| PREDICTED: transgelin-3-like isoform 1 [Sus ... 147 2e-35
Alignment gi|XP_003355153.1| PREDICTED: transgelin-2-like isoform 2 [Sus ... 144 1e-34
>ref|XP_003125950.1| PREDICTED: calponin-3 [Sus scrofa].
Length = 579
Score = 805 bits (2079), Expect = 0.0
Identities = 392/395 (99%), Positives = 392/395 (99%)
Frame = +2
Query: 35 SAGPPPTEQPRHRPAPAVASGRLLRRPGERAPSISGCGHSSGPGAWKPSARNLRTRAQPL 214
SAGPPPTEQPRHRPAPAVASGRLL RPGERAPSISGCGHSSGPGAWKPSARNLRTRAQPL
Sbjct: 185 SAGPPPTEQPRHRPAPAVASGRLLHRPGERAPSISGCGHSSGPGAWKPSARNLRTRAQPL 244
Query: 215 PAARIIMTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKD 394
P RIIMTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKD
Sbjct: 245 PGPRIIMTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKD 304
Query: 395 GIILCELINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
GIILCELINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN
Sbjct: 305 GIILCELINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 364
Query: 575 MTQVQTTLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCA 754
MTQVQTTLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCA
Sbjct: 365 MTQVQTTLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCA 424
Query: 755 SQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLT 934
SQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLT
Sbjct: 425 SQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLT 484
Query: 935 LQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSE 1114
LQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSE
Sbjct: 485 LQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSE 544
Query: 1115 ISDSDYQAEYPDEYHGEYPDDYPRDYQYGDQGIDY 1219
ISDSDYQAEYPDEYHGEYPDDYPRDYQYGDQGIDY
Sbjct: 545 ISDSDYQAEYPDEYHGEYPDDYPRDYQYGDQGIDY 579
>ref|NP_999043.1| calponin-1 [Sus scrofa].
Length = 297
Score = 410 bits (1053), Expect = e-114
Identities = 200/277 (72%), Positives = 231/277 (83%)
Frame = +2
Query: 239 HFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCELI 418
HFN+GP+YGLSAEVKNK+A KYDHQ E++LR WIE VTG IG +F GLKDGIILCE I
Sbjct: 5 HFNRGPAYGLSAEVKNKLAQKYDHQQEQELREWIEGVTGRRIGNNFMDGLKDGIILCEFI 64
Query: 419 NKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTL 598
NKLQPGSVKKVNES+ NW QLENIGNFIKAI YG+KPHDIFEANDLFEN N TQVQ+TL
Sbjct: 65 NKLQPGSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTL 124
Query: 599 VALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAY 778
+ALA +AKTKG +++GVKYAEKQ R+F+ KL+ G+++IGLQMGTNK ASQ GMTAY
Sbjct: 125 LALASMAKTKG--NKVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGTNKFASQQGMTAY 182
Query: 779 GTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNST 958
GTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQAGM APGT+R I++ L ++ D
Sbjct: 183 GTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEHCDTLN 242
Query: 959 ISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEP 1069
+SLQMG+NK ASQ+GM+VYGL RQVYDPKYC P P
Sbjct: 243 VSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLTPEYP 279
>ref|XP_003354007.1| PREDICTED: calponin-2 isoform 1 [Sus scrofa].
Length = 309
Score = 391 bits (1004), Expect = e-109
Identities = 198/306 (64%), Positives = 228/306 (74%)
Frame = +2
Query: 236 THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+SIG FQ GLKDGIILC L
Sbjct: 4 TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGIILCTL 63
Query: 416 INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
+NKLQPGSV K+N S NW QLEN+ NFIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64 MNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123
Query: 596 LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
L+ALAG AKTKG + +DIGVKY+EKQ R FD+ +KAGQ VIGLQMGTNKCASQ+GMTA
Sbjct: 124 LLALAGKAKTKGLQSDVDIGVKYSEKQQRNFDDATMKAGQCVIGLQMGTNKCASQSGMTA 183
Query: 776 YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
YGTRRHLYDPK P D +TISLQMGTNK ASQ GM APGTRR IYD KL DNS
Sbjct: 184 YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 243
Query: 956 TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
++SLQMG + A+Q G V+GLGRQ+YDPKYC P P G +Y
Sbjct: 244 SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGPAADGAPAAAGDCPGPGESPEYP 300
Query: 1136 AEYPDE 1153
Y +E
Sbjct: 301 PYYQEE 306
>ref|XP_003354008.1| PREDICTED: calponin-2 isoform 2 [Sus scrofa].
Length = 270
Score = 320 bits (820), Expect = 1e-87
Identities = 172/306 (56%), Positives = 198/306 (64%)
Frame = +2
Query: 236 THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+SIG FQ GLKDGIILC L
Sbjct: 4 TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGIILCTL 63
Query: 416 INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
+NKLQPGSV K+N S NW QLEN+ NFIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64 MNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123
Query: 596 LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
L+ALAG +MGTNKCASQ+GMTA
Sbjct: 124 LLALAG---------------------------------------KMGTNKCASQSGMTA 144
Query: 776 YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
YGTRRHLYDPK P D +TISLQMGTNK ASQ GM APGTRR IYD KL DNS
Sbjct: 145 YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 204
Query: 956 TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
++SLQMG + A+Q G V+GLGRQ+YDPKYC P P G +Y
Sbjct: 205 SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGPAADGAPAAAGDCPGPGESPEYP 261
Query: 1136 AEYPDE 1153
Y +E
Sbjct: 262 PYYQEE 267
>ref|XP_003357356.1| PREDICTED: transgelin [Sus scrofa].
Length = 213
Score = 147 bits (372), Expect = 1e-35
Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
NKGPSYG+S EV++KI KYD + EE L WI G +G FQ+ LK+G+IL
Sbjct: 15 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 74
Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
+L+N L P K V N S+ + Q+E + F+KA + YG+ D+F+ DLFE +
Sbjct: 75 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 134
Query: 575 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
+ VQ TL+AL LA TK + + +K A++ R F E +L+ G+ VIGLQMG+N
Sbjct: 135 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 194
Query: 746 KCASQAGMTAYGTRRHL 796
+ ASQAGMT YG R +
Sbjct: 195 RGASQAGMTGYGRPRQI 211
>ref|XP_003129930.1| PREDICTED: transgelin isoform 2 [Sus scrofa].
Length = 201
Score = 147 bits (372), Expect = 1e-35
Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
NKGPSYG+S EV++KI KYD + EE L WI G +G FQ+ LK+G+IL
Sbjct: 3 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 62
Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
+L+N L P K V N S+ + Q+E + F+KA + YG+ D+F+ DLFE +
Sbjct: 63 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 122
Query: 575 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
+ VQ TL+AL LA TK + + +K A++ R F E +L+ G+ VIGLQMG+N
Sbjct: 123 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 182
Query: 746 KCASQAGMTAYGTRRHL 796
+ ASQAGMT YG R +
Sbjct: 183 RGASQAGMTGYGRPRQI 199
>ref|XP_003129929.1| PREDICTED: transgelin isoform 1 [Sus scrofa].
Length = 201
Score = 147 bits (372), Expect = 1e-35
Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
NKGPSYG+S EV++KI KYD + EE L WI G +G FQ+ LK+G+IL
Sbjct: 3 NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 62
Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
+L+N L P K V N S+ + Q+E + F+KA + YG+ D+F+ DLFE +
Sbjct: 63 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 122
Query: 575 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
+ VQ TL+AL LA TK + + +K A++ R F E +L+ G+ VIGLQMG+N
Sbjct: 123 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 182
Query: 746 KCASQAGMTAYGTRRHL 796
+ ASQAGMT YG R +
Sbjct: 183 RGASQAGMTGYGRPRQI 199
>ref|XP_003361052.1| PREDICTED: transgelin-3-like isoform 2 [Sus scrofa].
Length = 199
Score = 147 bits (370), Expect = 2e-35
Identities = 89/203 (43%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWI-----EEVTGMSIG-TSFQLGLKDGIIL 406
N+GPSYGLS EV+ KI KYD E L +WI E++ G T FQ L DG +L
Sbjct: 3 NRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRTHFQKWLMDGTVL 62
Query: 407 CELINKLQPGS---VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
C+LIN L P + K++ES + + Q+E I F+KA + YG++ DIF+ DL+E +M
Sbjct: 63 CKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWEGKDM 122
Query: 578 TQVQTTLVALAGLAKTKG----------FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIG 727
VQ TL+AL +A TK FH + A++ R F E +L+ GQ+VIG
Sbjct: 123 AAVQRTLMALGSVAVTKDDGCYRGEPSWFH-------RKAQQNRRGFSEEQLRQGQNVIG 175
Query: 728 LQMGTNKCASQAGMTAYGTRRHL 796
LQMG+NK ASQAGMT YG R +
Sbjct: 176 LQMGSNKGASQAGMTGYGMPRQI 198
>ref|XP_003361051.1| PREDICTED: transgelin-3-like isoform 1 [Sus scrofa].
Length = 199
Score = 147 bits (370), Expect = 2e-35
Identities = 89/203 (43%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWI-----EEVTGMSIG-TSFQLGLKDGIIL 406
N+GPSYGLS EV+ KI KYD E L +WI E++ G T FQ L DG +L
Sbjct: 3 NRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRTHFQKWLMDGTVL 62
Query: 407 CELINKLQPGS---VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
C+LIN L P + K++ES + + Q+E I F+KA + YG++ DIF+ DL+E +M
Sbjct: 63 CKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWEGKDM 122
Query: 578 TQVQTTLVALAGLAKTKG----------FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIG 727
VQ TL+AL +A TK FH + A++ R F E +L+ GQ+VIG
Sbjct: 123 AAVQRTLMALGSVAVTKDDGCYRGEPSWFH-------RKAQQNRRGFSEEQLRQGQNVIG 175
Query: 728 LQMGTNKCASQAGMTAYGTRRHL 796
LQMG+NK ASQAGMT YG R +
Sbjct: 176 LQMGSNKGASQAGMTGYGMPRQI 198
>ref|XP_003355153.1| PREDICTED: transgelin-2-like isoform 2 [Sus scrofa].
Length = 199
Score = 144 bits (363), Expect = 1e-34
Identities = 84/196 (42%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
Frame = +2
Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
N+GP+YGLS EV+ KI +YD E+ L WI +G +FQ LKDG +L
Sbjct: 3 NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 62
Query: 407 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
CELIN L P VKK+ S++ + Q+E I F++A + YG+ DIF+ DL+E NM
Sbjct: 63 CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 122
Query: 578 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 748
VQ TL+ L GLA + F + K +++ R F + +L+ G++VIGLQMGTN+
Sbjct: 123 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 182
Query: 749 CASQAGMTAYGTRRHL 796
ASQAGMT YG R +
Sbjct: 183 GASQAGMTGYGMPRQI 198
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,883,353
Number of extensions: 992109
Number of successful extensions: 4370
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4278
Number of HSP's successfully gapped: 22
Length of query: 532
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 428
Effective length of database: 8,754,644
Effective search space: 3746987632
Effective search space used: 3746987632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002246
(1597 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1326 0.0
Sscrofa_Chr02 611 e-172
Sscrofa_Chr03 94 3e-16
>Sscrofa_Chr04
|| Length = 143465943
Score = 1326 bits (669), Expect = 0.0
Identities = 696/707 (98%), Gaps = 1/707 (0%)
Strand = Plus / Minus
Query: 877 ccaggcgggcatgttggcaccaggcacccggagagacatctacgatcagaagctaacact 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134246408 ccaggcgggcatgttggcaccaggcacccggagagacatctacgatcagaagctaacact 134246349
Query: 937 acaacccgtggacaactcgacgatttcgctccagatgggcaccaacaaagtcgcttccca 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134246348 acaacccgtggacaactcgacgatttcgctccagatgggcaccaacaaagtcgcttccca 134246289
Query: 997 gaaaggcatgagcgtgtacgggcttgggcggcaagtgtacgaccccaaatactgcgctgc 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134246288 gaaaggcatgagcgtgtacgggcttgggcggcaagtgtacgaccccaaatactgcgctgc 134246229
Query: 1057 tcccaccgaaccggtcattcacaacggaagccaaggaacgggaacgaatgggtcggaaat 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134246228 tcccaccgaaccggtcattcacaacggaagccaaggaacgggaacgaatgggtcggaaat 134246169
Query: 1117 cagcgatagcgattatcaggcagagtaccccgatgagtatcatggcgagtacccggatga 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134246168 cagcgatagcgattatcaggcagagtaccccgatgagtatcatggcgagtacccggatga 134246109
Query: 1177 ctaccccagagattatcaatacggcgaccagggcattgattattaggttcacgggggagc 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134246108 ctaccccagagattatcaatacggcgaccagggcattgattattaggttcacgggggagc 134246049
Query: 1237 tcagcgtgtagcccgttgtcttattcagtgagaaccaagctagccttgagtaagttttta 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134246048 tcagcgtgtagcccgttgtcttattcagtgagaaccaagctagccttgagtaagttttta 134245989
Query: 1297 atctcgtcttcctaaaacactattatgcttattctacctaaaggaaatattgccttacat 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134245988 atctcgtcttcctaaaacactattatgcttattctacctaaaggaaatattgccttacat 134245929
Query: 1357 acattcctttttcctttttcagcctcttccctaaatagttgccttctagtgctgtaacag 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134245928 acattcctttttcctttttcagcctcttccctaaatagttgccttctagtgctgtaacag 134245869
Query: 1417 ttaaatcctacagcataaccgataactcgcatatgaagtaaaaaggaagactgtgaaagg 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134245868 ttaaatcctacagcataaccgataactcgcatatgaagtaaaaaggaagactgtgaaagg 134245809
Query: 1477 gaggactcttgtacagtcaattcttttattgnnnnnnnnntctatgcatttttacagtcc 1536
||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 134245808 gaggactcttgtacagtcaattcttttattgaaaaaaaaatctatgcatttttacagtcc 134245749
Query: 1537 tctacttaaaactggtattttcaaac-ataggaagcgtcctgntttg 1582
|||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 134245748 tctacttaaaactggtattttcaaacaataggaagcgtcctggtttg 134245702
Score = 549 bits (277), Expect = e-153
Identities = 286/289 (98%)
Strand = Plus / Minus
Query: 1 agttcgtgcgggactccggcgccgactgggagcctctgcgggacctcctccgaccgagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134269265 agttcgtgcgggactccggcgccgactgggagcctctgcgggacctcctccgaccgagca 134269206
Query: 61 gccgaggcaccgccccgcgcccgccgtcgcgtccggacgactcctgcgccgcccagggga 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 134269205 gccgaggcaccgccccgcgcccgccgtcgcgtccggacgactcctgcaccgcccagggga 134269146
Query: 121 acgagctccgagcatctcggggtgcggccactcctcggggccaggagcgtggaagccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134269145 acgagctccgagcatctcggggtgcggccactcctcggggccaggagcgtggaagccaag 134269086
Query: 181 tgctaggaacctccggacccgagctcagcctcttcccgccgcccgaatcatcatgaccca 240
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 134269085 tgctaggaacctccggacccgagctcagcctcttcccggcccccgaatcatcatgaccca 134269026
Query: 241 cttcaacaagggcccttcctacgggctctcggccgaggtcaagaacaag 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134269025 cttcaacaagggcccttcctacgggctctcggccgaggtcaagaacaag 134268977
Score = 289 bits (146), Expect = 2e-75
Identities = 149/150 (99%)
Strand = Plus / Minus
Query: 732 agatgggaaccaacaaatgcgccagccaagcaggtatgacagcctacgggacgcggaggc 791
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 134247996 agatgggaaccaacaaatgcgccagccaagcaggtatgaccgcctacgggacgcggaggc 134247937
Query: 792 atctttatgatcccaaaatgcaaaccgacaaaccttttgatcagaccacgattagtctgc 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134247936 atctttatgatcccaaaatgcaaaccgacaaaccttttgatcagaccacgattagtctgc 134247877
Query: 852 agatgggcaccaacaaaggagccagccagg 881
||||||||||||||||||||||||||||||
Sbjct: 134247876 agatgggcaccaacaaaggagccagccagg 134247847
Score = 281 bits (142), Expect = 6e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 476 cagctggagaatattggtaattttattaaagctattcaggcttatggtatgaagccacat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134250573 cagctggagaatattggtaattttattaaagctattcaggcttatggtatgaagccacat 134250514
Query: 536 gacatatttgaagccaatgatctttttgagaatgggaacatgacccaggttcagacgacg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134250513 gacatatttgaagccaatgatctttttgagaatgggaacatgacccaggttcagacgacg 134250454
Query: 596 ctggtggccctggcaggcctgg 617
||||||||||||||||||||||
Sbjct: 134250453 ctggtggccctggcaggcctgg 134250432
Score = 240 bits (121), Expect = 2e-60
Identities = 124/125 (99%)
Strand = Plus / Minus
Query: 288 agatcgcctccaagtatgaccaccaggcggaagaagatcttcgcaactggatagaggagg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 134252070 agatcgcctccaagtatgaccaccaggcggaagaagatcttcgcaactggatagaagagg 134252011
Query: 348 tgacaggcatgagcattggcaccagctttcagctgggcctgaaagatggcataatcctct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134252010 tgacaggcatgagcattggcaccagctttcagctgggcctgaaagatggcataatcctct 134251951
Query: 408 gcgag 412
|||||
Sbjct: 134251950 gcgag 134251946
Score = 226 bits (114), Expect = 3e-56
Identities = 117/118 (99%)
Strand = Plus / Minus
Query: 616 ggctaaaacaaaaggattccacaccaccattgacattggcgtgaagtacgcagaaaaaca 675
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 134250068 ggctaaaacaaaaggattccacaccaccattgacattggagtgaagtacgcagaaaaaca 134250009
Query: 676 aacaagacgtttcgatgaaggaaaattaaaagccggccagagtgtaattggcttgcag 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134250008 aacaagacgtttcgatgaaggaaaattaaaagccggccagagtgtaattggcttgcag 134249951
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 412 gctcataaacaagctgcagcccggctccgtgaagaaggtgaacgagtcctcattaaactg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134251733 gctcataaacaagctgcagcccggctccgtgaagaaggtgaacgagtcctcattaaactg 134251674
Query: 472 gcctcag 478
|||||||
Sbjct: 134251673 gcctcag 134251667
>Sscrofa_Chr02
|| Length = 162569375
Score = 611 bits (308), Expect = e-172
Identities = 1045/1290 (81%), Gaps = 78/1290 (6%)
Strand = Plus / Minus
Query: 229 catcatgacccactt-caacaagggcccttcctacgggctctcggccgaggtcaagaaca 287
||||||||| ||||| |||||| ||||||||||| ||||||| || ||| || | ||||
Sbjct: 52689047 catcatgactcactttcaacaacagcccttcctacaggctctcagctgagatccaaaaca 52688988
Query: 288 agatcgcctccaagtatgaccaccaggcggaagaagatcttcgcaactggatagaggagg 347
|||| || ||||||| ||| | ||||| |||||||||||| ||||||||||| ||||
Sbjct: 52688987 agattgcttccaagtgtgattatcaggcagaagaagatctttgcaactggatat--gagg 52688930
Query: 348 tgacaggcatgagcattggcaccagctttcagctgggcctgaaagatggcataatcctct 407
||||||||| ||||| || ||||| |||||||||||| |||||| ||| |||
Sbjct: 52688929 tgacaggcaagagcactgacaccaactttcagctggg--------atggcaaaattctcc 52688878
Query: 408 gcgagctcataaacaagctgcagcccggctccgtgaagaaggtgaacgagtcctcattaa 467
||| || ||||||||||| ||||||||| |||||||||| ||| ||
Sbjct: 52688877 acgaactaataaacaagctatagcccggcttggtgaagaaggccaac-----------aa 52688829
Query: 468 actggcctcagctggagaatattggtaattttattaaagctattcaggcttatggtatga 527
|||||||||||||||||||||| | || |||| ||||||||||||||||||||||| ||
Sbjct: 52688828 actggcctcagctggagaatatgagcaactttactaaagctattcaggcttatggtagga 52688769
Query: 528 agccacatgacatatttgaagccaatgatctttttgagaatgggaacatgacccaggttc 587
|| ||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 52688768 agtcacgtgacatatttgaagcctatgatctttttgagcatgggaacatgacccaggttc 52688709
Query: 588 agacgacgctggtggccctggcaggcctggctaaaacaaaaggattccacaccaccattg 647
|||| | |||||||||||| |||| |||||||||||||||||| ||| || || ||||
Sbjct: 52688708 agactatgctggtggccctagcagatatggctaaaacaaaaggataccatacaactattg 52688649
Query: 648 acattggcgtgaagtacgcagaaaaacaaacaagacgtttcgatgaaggaaaattaaaag 707
||||| |||| ||| | |||||||| ||||||| ||| |||||||||||||||||||
Sbjct: 52688648 acattagcgttaagcatgcagaaaa----acaagacattttgatgaaggaaaattaaaag 52688593
Query: 708 ccggccagagtgtaattggcttgcagatgggaaccaacaaatgcgccagccaagcaggta 767
| || || |||| || || ||||| ||||||||||||| ||| ||||||||||||||||
Sbjct: 52688592 ctggtcaaagtgaaactgctttgcacatgggaaccaacacatgtgccagccaagcaggta 52688533
Query: 768 tgacagcctacgggacgcggaggcatctttatgatcccaaaatgcaaaccgacaaacctt 827
|||||||||| ||| ||||||||| |||||||||| |||||||||| || |||||||
Sbjct: 52688532 caacagcctacgcgactaggaggcatccttatgatccccaaatgcaaactgaaaaacctt 52688473
Query: 828 ttgatcagaccacgattagtctgcagatgggcaccaacaaaggagccagccaggcgggca 887
||||||||||| || |||||||| ||||| ||||||| ||||||||| || || |
Sbjct: 52688472 ctgatcagaccagga----tctgcagacgggcatgaacaaagaagccagcca-gctggga 52688418
Query: 888 tgttggcaccaggcacccggagagacatctacgatcagaagctaacactacaacccgtgg 947
|||| |||||| | ||||| ||||||| || ||||||||||||||| |||||| ||||
Sbjct: 52688417 tgttagcaccaagtacccgaagagacagctgtgatcagaagctaacattacaacttgtgg 52688358
Query: 948 acaactcgacgatttcgctccagatgggcaccaacaaagtcgcttcccagaaaggcatga 1007
|||| ||||| ||||| || |||||| | ||||||||||||||||||| |||||| | ||
Sbjct: 52688357 acaattcgacaatttctctacagatgtgtaccaacaaagtcgcttcccggaaaggaaaga 52688298
Query: 1008 gcgtgtacgggcttgggcggcaagtgtacgaccccaaatactgcgctgctcccaccgaac 1067
| ||||| || | | || || || ||||||||||| ||||||||||| ||
Sbjct: 52688297 gtgtgtatggtc--------aaggtatatgatcccaaatactgtgctgctcccacagagt 52688246
Query: 1068 cggtcattcacaacggaagccaaggaacgggaacgaatgggtcggaaatcagcgatagcg 1127
| | ||||||||| |||||| |||||| ||||| |||||||||| |||||| || || |
Sbjct: 52688245 ctgacattcacaatagaagcc-aggaacaggaacaaatgggtcgggaatcagtgacagtg 52688187
Query: 1128 attatcaggcagagtaccccgatgagtatcatggcgagtacccggatgactaccccagag 1187
||||||||| || || || |||| | ||||||| | |||| ||||||||||| | ||
Sbjct: 52688186 attatcaggaggactaaccacatgaat-tcatggcaactaccaagatgactaccctaaag 52688128
Query: 1188 at----tatcaatacggcgaccagggcattgattattaggttcacgggggagctcagcgt 1243
|| |||||||| || ||||| |||| |||||||||| ||||| | |||||||||
Sbjct: 52688127 attatctatcaatatggagaccaaggcactgattattagattcacagaggagctcag--- 52688071
Query: 1244 gtagcccgttgtcttattcagtgagaaccaagctagccttgagtaagtttttaatctcgt 1303
||||||||||| |||||||||||||||||| |||| | |||||
Sbjct: 52688070 ----------------ttcagtgagaaacaagctagccttgagtaa--tttttacctcgt 52688029
Query: 1304 cttcctaaaacactattatgcttattctacctaaaggaaatattgccttacatacattcc 1363
|||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct: 52688028 cttcctaaaacattattatgcttatcctacctaatggaaatattgccttacatatattct 52687969
Query: 1364 tttttcctttttcagcctcttcc------ctaaatagttgccttctagtgctgtaacagt 1417
||||||||||||| ||||||||| ||||||| |||||| |||||||||||||||
Sbjct: 52687968 tttttcctttttctgcctcttccgtaaatataaatagctgccttttagtgctgtaacagt 52687909
Query: 1418 taaatcctacagcataaccgataactcgcatatgaagtaaaaaggaagactgtgaaag-g 1476
| ||||||||||||||||| |||||| | | |||||||||||||||||||||| |
Sbjct: 52687908 ttaatcctacagcataaccagtaactcac-----aggtaaaaaggaagactgtgaaagag 52687854
Query: 1477 gaggactcttgtacagtcaattcttttatt 1506
||| || |||||||||||||||||||||||
Sbjct: 52687853 gagtacccttgtacagtcaattcttttatt 52687824
Score = 65.9 bits (33), Expect = 6e-08
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 242 ttcaacaagggcccttcctacgggctctcggccgaggtcaagaac 286
||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 77612161 ttcaacaaggggccctcgtacgggctctcggccgaggtcaagaac 77612205
Score = 60.0 bits (30), Expect = 4e-06
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 848 ctgcagatgggcaccaacaaaggagccagccagg 881
|||||||||||||||||||| |||||||||||||
Sbjct: 70543156 ctgcagatgggcaccaacaagggagccagccagg 70543189
Score = 60.0 bits (30), Expect = 4e-06
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 848 ctgcagatgggcaccaacaaaggagccagccaggcgggcatg 889
||||||||||||||||||||| | ||||||||| ||||||||
Sbjct: 77619671 ctgcagatgggcaccaacaaatgtgccagccagtcgggcatg 77619712
>Sscrofa_Chr03
|| Length = 144787322
Score = 93.7 bits (47), Expect = 3e-16
Identities = 62/67 (92%)
Strand = Plus / Minus
Query: 1302 gtcttcctaaaacactattatgcttattctacctaaaggaaatattgccttacatacatt 1361
||||||||||||||||| |||||||||| ||||||||||||| | ||||||||| |||||
Sbjct: 55751746 gtcttcctaaaacactactatgcttattttacctaaaggaaacagtgccttacaaacatt 55751687
Query: 1362 ccttttt 1368
|||||||
Sbjct: 55751686 ccttttt 55751680
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,838,843
Number of extensions: 290
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 18
Length of query: 1597
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1575
Effective length of database: 2,808,408,574
Effective search space: 4423243504050
Effective search space used: 4423243504050
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)