Animal-Genome cDNA 20110601C-002246


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002246
         (1597 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001033268.1| calponin-3 [Bos taurus].                          668   0.0  
Alignment   gi|XP_002686086.1| PREDICTED: calponin 3-like [Bos taurus].          666   0.0  
Alignment   gi|XP_001254702.1| PREDICTED: calponin 3 isoform 1 [Bos taurus].     666   0.0  
Alignment   gi|NP_001039844.1| calponin-1 [Bos taurus].                          411   e-114
Alignment   gi|NP_001030497.1| calponin-2 [Bos taurus].                          388   e-108
Alignment   gi|NP_001039614.1| transgelin [Bos taurus].                          148   2e-35
Alignment   gi|NP_001029671.1| transgelin-3 [Bos taurus].                        145   1e-34
Alignment   gi|NP_001013617.1| transgelin-2 [Bos taurus].                        143   4e-34
Alignment   gi|XP_002690168.1| PREDICTED: transgelin 2-like [Bos taurus].        121   2e-27
Alignment   gi|XP_582214.3| PREDICTED: transgelin 2 [Bos taurus].                121   2e-27

>ref|NP_001033268.1| calponin-3 [Bos taurus].
          Length = 329

 Score =  668 bits (1724), Expect = 0.0
 Identities = 326/329 (99%), Positives = 327/329 (99%)
 Frame = +2

Query: 233  MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCE 412
            MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIG +FQLGLKDGIILCE
Sbjct: 1    MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGANFQLGLKDGIILCE 60

Query: 413  LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 592
            LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT
Sbjct: 61   LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 120

Query: 593  TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 772
            TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT
Sbjct: 121  TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 180

Query: 773  AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 952
            AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN
Sbjct: 181  AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 240

Query: 953  STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 1132
            STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY
Sbjct: 241  STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 300

Query: 1133 QAEYPDEYHGEYPDDYPRDYQYGDQGIDY 1219
            QAEYPDEYHGEY DDYPRDYQYGDQGIDY
Sbjct: 301  QAEYPDEYHGEYQDDYPRDYQYGDQGIDY 329


>ref|XP_002686086.1| PREDICTED: calponin 3-like [Bos taurus].
          Length = 329

 Score =  666 bits (1719), Expect = 0.0
 Identities = 325/329 (98%), Positives = 326/329 (99%)
 Frame = +2

Query: 233  MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCE 412
            MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIG +FQLGLKDGIILCE
Sbjct: 1    MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGANFQLGLKDGIILCE 60

Query: 413  LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 592
            LINKLQPG VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT
Sbjct: 61   LINKLQPGPVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 120

Query: 593  TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 772
            TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT
Sbjct: 121  TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 180

Query: 773  AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 952
            AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN
Sbjct: 181  AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 240

Query: 953  STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 1132
            STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY
Sbjct: 241  STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 300

Query: 1133 QAEYPDEYHGEYPDDYPRDYQYGDQGIDY 1219
            QAEYPDEYHGEY DDYPRDYQYGDQGIDY
Sbjct: 301  QAEYPDEYHGEYQDDYPRDYQYGDQGIDY 329


>ref|XP_001254702.1| PREDICTED: calponin 3 isoform 1 [Bos taurus].
          Length = 329

 Score =  666 bits (1719), Expect = 0.0
 Identities = 325/329 (98%), Positives = 326/329 (99%)
 Frame = +2

Query: 233  MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCE 412
            MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIG +FQLGLKDGIILCE
Sbjct: 1    MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGANFQLGLKDGIILCE 60

Query: 413  LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 592
            LINKLQPG VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT
Sbjct: 61   LINKLQPGPVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 120

Query: 593  TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 772
            TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT
Sbjct: 121  TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 180

Query: 773  AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 952
            AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN
Sbjct: 181  AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 240

Query: 953  STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 1132
            STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY
Sbjct: 241  STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 300

Query: 1133 QAEYPDEYHGEYPDDYPRDYQYGDQGIDY 1219
            QAEYPDEYHGEY DDYPRDYQYGDQGIDY
Sbjct: 301  QAEYPDEYHGEYQDDYPRDYQYGDQGIDY 329


>ref|NP_001039844.1| calponin-1 [Bos taurus].
          Length = 297

 Score =  411 bits (1056), Expect = e-114
 Identities = 201/277 (72%), Positives = 231/277 (83%)
 Frame = +2

Query: 239  HFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCELI 418
            HFN+GP+YGLSAEVKNK+A KYDHQ E++LR WIE VTG  IG +F  GLKDGIILCE I
Sbjct: 5    HFNRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFI 64

Query: 419  NKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTL 598
            NKLQPGSVKKVNES+ NW QLENIGNFIKAI  YG+KPHDIFEANDLFEN N TQVQ+TL
Sbjct: 65   NKLQPGSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTL 124

Query: 599  VALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAY 778
            +ALA +AKTKG    +++GVKYAEKQ RRF+  KL+ G+++IGLQMGTNK ASQ GMTAY
Sbjct: 125  LALASMAKTKG--NKVNVGVKYAEKQERRFEPEKLREGRNIIGLQMGTNKFASQQGMTAY 182

Query: 779  GTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNST 958
            GTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQAGM APGT+R I++  L ++  D   
Sbjct: 183  GTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEHCDTLN 242

Query: 959  ISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEP 1069
            +SLQMG+NK ASQ+GM+VYGL RQVYDPKYC  P  P
Sbjct: 243  VSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLTPEYP 279


>ref|NP_001030497.1| calponin-2 [Bos taurus].
          Length = 309

 Score =  388 bits (997), Expect = e-108
 Identities = 196/306 (64%), Positives = 228/306 (74%)
 Frame = +2

Query: 236  THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
            T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+S+G  FQ GLKDGIILC L
Sbjct: 4    TQFNKGPSYGLSAEVKNRLQSKYDPQKEAELRSWIEGLTGLSVGPDFQKGLKDGIILCTL 63

Query: 416  INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
            +NKLQPGSV K+N S  NW QLEN+ NFIKA+ +YGM P D+FEANDLFE+GN+TQVQ +
Sbjct: 64   MNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNLTQVQVS 123

Query: 596  LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
            L+ALAG AKTKG  + +DIGVKY+EKQ R FD+  +KAGQ VIGLQMGTNKCASQ+GMTA
Sbjct: 124  LLALAGKAKTKGLQSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNKCASQSGMTA 183

Query: 776  YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
            YGTRRHLYDPK     P D +TISLQMGTNK ASQ GM APGTRR IYD KL     DNS
Sbjct: 184  YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 243

Query: 956  TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
            ++SLQMG  + A+Q G  V+GLGRQ+YDPKYC  P  P         G        S+  
Sbjct: 244  SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGPAADGAPAAAGDGPGPGEPSECP 300

Query: 1136 AEYPDE 1153
              Y +E
Sbjct: 301  PYYQEE 306


>ref|NP_001039614.1| transgelin [Bos taurus].
          Length = 201

 Score =  148 bits (373), Expect = 2e-35
 Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
           NKGPSYG+S EV++KI  KYD + EE L  WI    G  +G        FQ+ LK+G+IL
Sbjct: 3   NKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGPDVGRPDRGRLGFQVWLKNGVIL 62

Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
            +L+N L P   K V    N  S+ + Q+E +  F+KA + YG+   D+F+  DLFE  +
Sbjct: 63  SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 122

Query: 575 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
           +  VQ TL+AL  LA TK    +    +  +K A++  R F E +L+ G+ VIGLQMG+N
Sbjct: 123 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 182

Query: 746 KCASQAGMTAYGTRRHL 796
           + ASQAGMT YG  R +
Sbjct: 183 RGASQAGMTGYGRPRQI 199


>ref|NP_001029671.1| transgelin-3 [Bos taurus].
          Length = 199

 Score =  145 bits (366), Expect = 1e-34
 Identities = 88/203 (43%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWI-----EEVTGMSIGTS-FQLGLKDGIIL 406
           N+GPSYGLS EV+ KI  KYD   E  L +WI     E++     G + FQ  L DG +L
Sbjct: 3   NRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGTVL 62

Query: 407 CELINKLQPGS---VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
           C+LIN L P     + K++ES + + Q+E I  F+KA + YG++  DIF+  DL+E  +M
Sbjct: 63  CKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWEGKDM 122

Query: 578 TQVQTTLVALAGLAKTKG----------FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIG 727
             VQ TL+AL  +A TK           FH       + A++  R F E +L+ GQ+VIG
Sbjct: 123 AAVQRTLMALGSVAVTKDDGCYRGEPSWFH-------RKAQQNRRGFSEEQLRQGQNVIG 175

Query: 728 LQMGTNKCASQAGMTAYGTRRHL 796
           LQMG+NK ASQAGMT YG  R +
Sbjct: 176 LQMGSNKGASQAGMTGYGMPRQI 198


>ref|NP_001013617.1| transgelin-2 [Bos taurus].
          Length = 199

 Score =  143 bits (361), Expect = 4e-34
 Identities = 84/196 (42%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
           N+GP+YGLS EV+ KI  +YD   E+ L  WI       +G       +FQ  LKDG +L
Sbjct: 3   NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 62

Query: 407 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
           CELIN L P     VKK+  S++ + Q+E I  F++A + YG+   DIF+  DL+E  NM
Sbjct: 63  CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 122

Query: 578 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 748
             VQ TL+ L GLA  +    F    +   K +++  R F + +L+ G++VIGLQMGTN+
Sbjct: 123 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRYFSDNQLQEGKNVIGLQMGTNR 182

Query: 749 CASQAGMTAYGTRRHL 796
            ASQAGMT YG  R +
Sbjct: 183 GASQAGMTGYGMPRQI 198


>ref|XP_002690168.1| PREDICTED: transgelin 2-like [Bos taurus].
          Length = 199

 Score =  121 bits (303), Expect = 2e-27
 Identities = 75/190 (39%), Positives = 106/190 (55%), Gaps = 12/190 (6%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIG------TSFQLGLKDGIIL 406
           N+GP+YGLS EV+ KI  +YD   E+ L  WI       +       T+FQ  LKDG +L
Sbjct: 3   NRGPAYGLSQEVQQKIDKQYDADLEQILIQWITTQCRKHVSRPQPGCTNFQNWLKDGTVL 62

Query: 407 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
           CELIN L P     VKK+  S+  + Q+  I  F++A + YG+  +DI +  DL+E  NM
Sbjct: 63  CELINGLYPEGQAPVKKIQASTTAFKQMGQISQFLQAAERYGINTNDISQTVDLWEGKNM 122

Query: 578 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 748
             VQ TL+ L  L        F    +   K +++  R F + +L+ G+++ GLQMGTN 
Sbjct: 123 ACVQRTLMNLGRLVVAWDDGLFSGDPNWFTKKSKENPRYFPDNQLQEGKNLFGLQMGTNH 182

Query: 749 CASQAGMTAY 778
            ASQAG+T Y
Sbjct: 183 GASQAGLTDY 192


>ref|XP_582214.3| PREDICTED: transgelin 2 [Bos taurus].
          Length = 199

 Score =  121 bits (303), Expect = 2e-27
 Identities = 75/190 (39%), Positives = 106/190 (55%), Gaps = 12/190 (6%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIG------TSFQLGLKDGIIL 406
           N+GP+YGLS EV+ KI  +YD   E+ L  WI       +       T+FQ  LKDG +L
Sbjct: 3   NRGPAYGLSQEVQQKIDKQYDADLEQILIQWITTQCRKHVSRPQPGCTNFQNWLKDGTVL 62

Query: 407 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
           CELIN L P     VKK+  S+  + Q+  I  F++A + YG+  +DI +  DL+E  NM
Sbjct: 63  CELINGLYPEGQAPVKKIQASTTAFKQMGQISQFLQAAERYGINTNDISQTVDLWEGKNM 122

Query: 578 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 748
             VQ TL+ L  L        F    +   K +++  R F + +L+ G+++ GLQMGTN 
Sbjct: 123 ACVQRTLMNLGRLVVAWDDGLFSGDPNWFTKKSKENPRYFPDNQLQEGKNLFGLQMGTNH 182

Query: 749 CASQAGMTAY 778
            ASQAG+T Y
Sbjct: 183 GASQAGLTDY 192


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,228,340
Number of extensions: 1544002
Number of successful extensions: 6581
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 6483
Number of HSP's successfully gapped: 18
Length of query: 532
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 425
Effective length of database: 14,140,958
Effective search space: 6009907150
Effective search space used: 6009907150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002246
         (1597 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_537063.2| PREDICTED: similar to calponin 3 [Canis familia...   630   0.0  
Alignment   gi|XP_542053.1| PREDICTED: similar to calponin 1, basic, smooth...   410   e-114
Alignment   gi|XP_854646.1| PREDICTED: similar to calponin 2 isoform a isof...   390   e-108
Alignment   gi|XP_868614.1| PREDICTED: similar to calponin 2 isoform a isof...   374   e-103
Alignment   gi|XP_867647.1| PREDICTED: similar to calponin 1, basic, smooth...   348   1e-95
Alignment   gi|XP_867658.1| PREDICTED: similar to calponin 1, basic, smooth...   339   5e-93
Alignment   gi|XP_868617.1| PREDICTED: similar to calponin 2 isoform b isof...   322   6e-88
Alignment   gi|XP_868615.1| PREDICTED: similar to calponin 2 isoform b isof...   218   1e-56
Alignment   gi|XP_867636.1| PREDICTED: similar to calponin 1, basic, smooth...   167   3e-41
Alignment   gi|XP_536561.2| PREDICTED: similar to transgelin isoform 1 [Can...   147   3e-35

>ref|XP_537063.2| PREDICTED: similar to calponin 3 [Canis familiaris].
          Length = 360

 Score =  630 bits (1626), Expect = 0.0
 Identities = 308/311 (99%), Positives = 310/311 (99%)
 Frame = +2

Query: 287  KIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCELINKLQPGSVKKVNESSL 466
            KIASKYDHQAEEDLRNWIEEVTGMSIGT+FQLGLKDGIILCELINKLQPGSVKKVNESSL
Sbjct: 50   KIASKYDHQAEEDLRNWIEEVTGMSIGTNFQLGLKDGIILCELINKLQPGSVKKVNESSL 109

Query: 467  NWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTI 646
            NWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTI
Sbjct: 110  NWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTI 169

Query: 647  DIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKP 826
            DIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKP
Sbjct: 170  DIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKP 229

Query: 827  FDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGM 1006
            FDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGM
Sbjct: 230  FDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGM 289

Query: 1007 SVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQAEYPDEYHGEYPDDYPR 1186
            SVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQAEYP+EY GEYPDDYPR
Sbjct: 290  SVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQAEYPEEYPGEYPDDYPR 349

Query: 1187 DYQYGDQGIDY 1219
            DYQYGDQGIDY
Sbjct: 350  DYQYGDQGIDY 360


>ref|XP_542053.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 1
            [Canis familiaris].
          Length = 297

 Score =  410 bits (1053), Expect = e-114
 Identities = 200/277 (72%), Positives = 231/277 (83%)
 Frame = +2

Query: 239  HFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCELI 418
            HFN+GP+YGLSAEVKNK+A KYDHQ E++LR WIE VTG  IG +F  GLKDGIILCE I
Sbjct: 5    HFNRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFI 64

Query: 419  NKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTL 598
            NKLQPGSVKKVNES+ NW QLENIGNFIKAI  YG+KPHDIFEANDLFEN N TQVQ+TL
Sbjct: 65   NKLQPGSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTL 124

Query: 599  VALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAY 778
            +ALA +AKTKG    +++GVKYAEKQ R+F+  KL+ G+++IGLQMGTNK ASQ GMTAY
Sbjct: 125  LALASMAKTKG--NKVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGTNKFASQQGMTAY 182

Query: 779  GTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNST 958
            GTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQAGM APGT+R I++  L ++  D   
Sbjct: 183  GTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEHCDTLN 242

Query: 959  ISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEP 1069
            +SLQMG+NK ASQ+GM+VYGL RQVYDPKYC  P  P
Sbjct: 243  VSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLTPEYP 279


>ref|XP_854646.1| PREDICTED: similar to calponin 2 isoform a isoform 1 [Canis
            familiaris].
          Length = 309

 Score =  390 bits (1003), Expect = e-108
 Identities = 198/306 (64%), Positives = 232/306 (75%)
 Frame = +2

Query: 236  THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
            T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+SIG  FQ GLKDG+ILC L
Sbjct: 4    TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGVILCTL 63

Query: 416  INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
            +NKLQPGSV K+N S  NW QLEN+  FIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64   MNKLQPGSVPKINRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123

Query: 596  LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
            L+ALAG AKTKG  + +DIGVKY+EKQ R FD+  +KAG  VIGLQMGTNKCASQ+GMTA
Sbjct: 124  LLALAGKAKTKGLQSGVDIGVKYSEKQERNFDDATMKAGHCVIGLQMGTNKCASQSGMTA 183

Query: 776  YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
            YGTRRHLYDPK     P D +TISLQMGTNK ASQ GM APGTRR IYD KL     DNS
Sbjct: 184  YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 243

Query: 956  TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
            ++SLQMG  + A+Q G  V+GLGRQ+YDPKYC  P  PV  +G+ G    G +  ++   
Sbjct: 244  SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGPVA-DGAAGAAGGGPDPGEAPEC 299

Query: 1136 AEYPDE 1153
              YP E
Sbjct: 300  TPYPQE 305


>ref|XP_868614.1| PREDICTED: similar to calponin 2 isoform a isoform 2 [Canis
            familiaris].
          Length = 300

 Score =  374 bits (961), Expect = e-103
 Identities = 193/306 (63%), Positives = 225/306 (73%)
 Frame = +2

Query: 236  THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
            T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+SIG  FQ GLKDG+ILC L
Sbjct: 4    TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGVILCTL 63

Query: 416  INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
            +NKLQPGSV K+N S  NW QLEN+  FIKA+ +YGM P D+FEANDLFE+GNMTQVQ  
Sbjct: 64   MNKLQPGSVPKINRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGNMTQVQ-- 121

Query: 596  LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
                   AKTKG  + +DIGVKY+EKQ R FD+  +KAG  VIGLQMGTNKCASQ+GMTA
Sbjct: 122  -------AKTKGLQSGVDIGVKYSEKQERNFDDATMKAGHCVIGLQMGTNKCASQSGMTA 174

Query: 776  YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
            YGTRRHLYDPK     P D +TISLQMGTNK ASQ GM APGTRR IYD KL     DNS
Sbjct: 175  YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 234

Query: 956  TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
            ++SLQMG  + A+Q G  V+GLGRQ+YDPKYC  P  PV  +G+ G    G +  ++   
Sbjct: 235  SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGPVA-DGAAGAAGGGPDPGEAPEC 290

Query: 1136 AEYPDE 1153
              YP E
Sbjct: 291  TPYPQE 296


>ref|XP_867647.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 3
           [Canis familiaris].
          Length = 258

 Score =  348 bits (892), Expect = 1e-95
 Identities = 171/235 (72%), Positives = 194/235 (82%)
 Frame = +2

Query: 239 HFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCELI 418
           HFN+GP+YGLSAEVKNK+A KYDHQ E++LR WIE VTG  IG +F  GLKDGIILCE I
Sbjct: 5   HFNRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFI 64

Query: 419 NKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTL 598
           NKLQPGSVKKVNES+ NW QLENIGNFIKAI  YG+KPHDIFEANDLFEN N TQVQ+TL
Sbjct: 65  NKLQPGSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTL 124

Query: 599 VALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAY 778
           +ALA +AKTKG    +++GVKYAEKQ R+F+  KL+ G+++IGLQMGTNK ASQ GMTAY
Sbjct: 125 LALASMAKTKG--NKVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGTNKFASQQGMTAY 182

Query: 779 GTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQP 943
           GTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQ GM   G  R +YD K  L P
Sbjct: 183 GTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQRGMTVYGLPRQVYDPKYCLTP 237


>ref|XP_867658.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 4
            [Canis familiaris].
          Length = 247

 Score =  339 bits (869), Expect = 5e-93
 Identities = 167/229 (72%), Positives = 192/229 (83%)
 Frame = +2

Query: 383  GLKDGIILCELINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLF 562
            GLKDGIILCE INKLQPGSVKKVNES+ NW QLENIGNFIKAI  YG+KPHDIFEANDLF
Sbjct: 3    GLKDGIILCEFINKLQPGSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLF 62

Query: 563  ENGNMTQVQTTLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGT 742
            EN N TQVQ+TL+ALA +AKTKG    +++GVKYAEKQ R+F+  KL+ G+++IGLQMGT
Sbjct: 63   ENTNHTQVQSTLLALASMAKTKG--NKVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGT 120

Query: 743  NKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYD 922
            NK ASQ GMTAYGTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQAGM APGT+R I++
Sbjct: 121  NKFASQQGMTAYGTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQIFE 180

Query: 923  QKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEP 1069
              L ++  D   +SLQMG+NK ASQ+GM+VYGL RQVYDPKYC  P  P
Sbjct: 181  PGLGMEHCDTLNVSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLTPEYP 229


>ref|XP_868617.1| PREDICTED: similar to calponin 2 isoform b isoform 4 [Canis
            familiaris].
          Length = 270

 Score =  322 bits (825), Expect = 6e-88
 Identities = 173/306 (56%), Positives = 203/306 (66%)
 Frame = +2

Query: 236  THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
            T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+SIG  FQ GLKDG+ILC L
Sbjct: 4    TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGVILCTL 63

Query: 416  INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
            +NKLQPGSV K+N S  NW QLEN+  FIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64   MNKLQPGSVPKINRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123

Query: 596  LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
            L+ALAG                                       +MGTNKCASQ+GMTA
Sbjct: 124  LLALAG---------------------------------------KMGTNKCASQSGMTA 144

Query: 776  YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
            YGTRRHLYDPK     P D +TISLQMGTNK ASQ GM APGTRR IYD KL     DNS
Sbjct: 145  YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 204

Query: 956  TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
            ++SLQMG  + A+Q G  V+GLGRQ+YDPKYC  P  PV  +G+ G    G +  ++   
Sbjct: 205  SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGPVA-DGAAGAAGGGPDPGEAPEC 260

Query: 1136 AEYPDE 1153
              YP E
Sbjct: 261  TPYPQE 266


>ref|XP_868615.1| PREDICTED: similar to calponin 2 isoform b isoform 3 [Canis
           familiaris].
          Length = 221

 Score =  218 bits (555), Expect = 1e-56
 Identities = 120/231 (51%), Positives = 146/231 (63%)
 Frame = +2

Query: 236 THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
           T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+SIG  FQ GLKDG+ILC L
Sbjct: 4   TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGVILCTL 63

Query: 416 INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
           +NKLQPGSV K+N S  NW QLEN+  FIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64  MNKLQPGSVPKINRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123

Query: 596 LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
           L+ALAG                                                + GMTA
Sbjct: 124 LLALAG------------------------------------------------KVGMTA 135

Query: 776 YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQK 928
            GTRRH+YD K+ TDK  D +++SLQMG  +GA+Q+G +  G  R IYD K
Sbjct: 136 PGTRRHIYDTKLGTDK-CDNSSMSLQMGYTQGANQSGQVF-GLGRQIYDPK 184



 Score = 83.2 bits (204), Expect = 7e-16
 Identities = 46/94 (48%), Positives = 58/94 (61%)
 Frame = +2

Query: 872  ASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYC 1051
            A + GM APGTRR IYD KL     DNS++SLQMG  + A+Q G  V+GLGRQ+YDPKYC
Sbjct: 128  AGKVGMTAPGTRRHIYDTKLGTDKCDNSSMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC 186

Query: 1052 AAPTEPVIHNGSQGTGTNGSEISDSDYQAEYPDE 1153
              P  PV  +G+ G    G +  ++     YP E
Sbjct: 187  --PQGPVA-DGAAGAAGGGPDPGEAPECTPYPQE 217


>ref|XP_867636.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 2
            [Canis familiaris].
          Length = 130

 Score =  167 bits (423), Expect = 3e-41
 Identities = 80/112 (71%), Positives = 91/112 (81%)
 Frame = +2

Query: 734  MGTNKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRD 913
            MGTNK ASQ GMTAYGTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQAGM APGT+R 
Sbjct: 1    MGTNKFASQQGMTAYGTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQ 60

Query: 914  IYDQKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEP 1069
            I++  L ++  D   +SLQMG+NK ASQ+GM+VYGL RQVYDPKYC  P  P
Sbjct: 61   IFEPGLGMEHCDTLNVSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLTPEYP 112



 Score = 80.5 bits (197), Expect = 4e-15
 Identities = 42/77 (54%), Positives = 52/77 (67%)
 Frame = +2

Query: 713 QSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGML 892
           Q+ I LQMGTNK ASQAGMTA GT+R +++P +  +   D   +SLQMG+NKGASQ GM 
Sbjct: 34  QATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEH-CDTLNVSLQMGSNKGASQRGMT 92

Query: 893 APGTRRDIYDQKLTLQP 943
             G  R +YD K  L P
Sbjct: 93  VYGLPRQVYDPKYCLTP 109


>ref|XP_536561.2| PREDICTED: similar to transgelin isoform 1 [Canis familiaris].
          Length = 201

 Score =  147 bits (371), Expect = 3e-35
 Identities = 84/197 (42%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
           NKGPSYG+S EV++KI  KYD + EE L  WI    G  +G        FQ+ LK+G+IL
Sbjct: 3   NKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGSDVGRPDRGRLGFQVWLKNGVIL 62

Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
            +L+N L P   K V    N  S+ + Q+E +  F+KA + YG+   D+F+  DL+E  +
Sbjct: 63  SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLYEGKD 122

Query: 575 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
           +  VQ TL+AL  LA TK    +    +  +K A++  R F E +L+ G+ VIGLQMG+N
Sbjct: 123 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 182

Query: 746 KCASQAGMTAYGTRRHL 796
           + ASQAGMT YG  R +
Sbjct: 183 RGASQAGMTGYGRPRQI 199


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,972,710
Number of extensions: 1596605
Number of successful extensions: 6800
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 6682
Number of HSP's successfully gapped: 23
Length of query: 532
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 424
Effective length of database: 15,274,216
Effective search space: 6476267584
Effective search space used: 6476267584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002246
         (1597 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001830.1| calponin-3 [Homo sapiens].                           665   0.0  
Alignment   gi|NP_001290.2| calponin-1 [Homo sapiens].                           412   e-115
Alignment   gi|NP_004359.1| calponin-2 isoform a [Homo sapiens].                 393   e-109
Alignment   gi|NP_958434.1| calponin-2 isoform b [Homo sapiens].                 322   5e-88
Alignment   gi|NP_001001522.1| transgelin [Homo sapiens].                        148   2e-35
Alignment   gi|NP_003177.2| transgelin [Homo sapiens].                           148   2e-35
Alignment   gi|NP_037391.2| transgelin-3 [Homo sapiens].                         145   8e-35
Alignment   gi|NP_001008274.1| transgelin-3 [Homo sapiens].                      145   8e-35
Alignment   gi|NP_001008273.1| transgelin-3 [Homo sapiens].                      145   8e-35
Alignment   gi|NP_003555.1| transgelin-2 [Homo sapiens].                         144   2e-34

>ref|NP_001830.1| calponin-3 [Homo sapiens].
          Length = 329

 Score =  665 bits (1717), Expect = 0.0
 Identities = 325/329 (98%), Positives = 326/329 (99%)
 Frame = +2

Query: 233  MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCE 412
            MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIG +FQLGLKDGIILCE
Sbjct: 1    MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGPNFQLGLKDGIILCE 60

Query: 413  LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 592
            LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT
Sbjct: 61   LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 120

Query: 593  TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 772
            TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT
Sbjct: 121  TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 180

Query: 773  AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 952
            AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN
Sbjct: 181  AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 240

Query: 953  STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 1132
            STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY
Sbjct: 241  STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 300

Query: 1133 QAEYPDEYHGEYPDDYPRDYQYGDQGIDY 1219
            QAEYPDEYHGEY DDYPRDYQY DQGIDY
Sbjct: 301  QAEYPDEYHGEYQDDYPRDYQYSDQGIDY 329


>ref|NP_001290.2| calponin-1 [Homo sapiens].
          Length = 297

 Score =  412 bits (1060), Expect = e-115
 Identities = 200/277 (72%), Positives = 232/277 (83%)
 Frame = +2

Query: 239  HFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCELI 418
            HFN+GP+YGLSAEVKNK+A KYDHQ E++LR WIE VTG  IG +F  GLKDGIILCE I
Sbjct: 5    HFNRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFI 64

Query: 419  NKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTL 598
            NKLQPGSVKK+NES+ NW QLENIGNFIKAI  YG+KPHDIFEANDLFEN N TQVQ+TL
Sbjct: 65   NKLQPGSVKKINESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTL 124

Query: 599  VALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAY 778
            +ALA +AKTKG    +++GVKYAEKQ R+F+ GKL+ G+++IGLQMGTNK ASQ GMTAY
Sbjct: 125  LALASMAKTKG--NKVNVGVKYAEKQERKFEPGKLREGRNIIGLQMGTNKFASQQGMTAY 182

Query: 779  GTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNST 958
            GTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQAGM APGT+R I++  L ++  D   
Sbjct: 183  GTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEHCDTLN 242

Query: 959  ISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEP 1069
            +SLQMG+NK ASQ+GM+VYGL RQVYDPKYC  P  P
Sbjct: 243  VSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLTPEYP 279


>ref|NP_004359.1| calponin-2 isoform a [Homo sapiens].
          Length = 309

 Score =  393 bits (1009), Expect = e-109
 Identities = 202/310 (65%), Positives = 230/310 (74%)
 Frame = +2

Query: 236  THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
            T FNKGPSYGLSAEVKN++ SKYD Q E +LR WIE +TG+SIG  FQ GLKDG ILC L
Sbjct: 4    TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIGPDFQKGLKDGTILCTL 63

Query: 416  INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
            +NKLQPGSV K+N S  NW QLEN+ NFIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64   MNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123

Query: 596  LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
            L+ALAG AKTKG  + +DIGVKY+EKQ R FD+  +KAGQ VIGLQMGTNKCASQ+GMTA
Sbjct: 124  LLALAGKAKTKGLQSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNKCASQSGMTA 183

Query: 776  YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
            YGTRRHLYDPK     P D +TISLQMGTNK ASQ GM APGTRR IYD KL     DNS
Sbjct: 184  YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 243

Query: 956  TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
            ++SLQMG  + A+Q G  V+GLGRQ+YDPKYC  P   V      GTG    +  D    
Sbjct: 244  SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGTVADGAPSGTG----DCPDPGEV 296

Query: 1136 AEYPDEYHGE 1165
             EYP  Y  E
Sbjct: 297  PEYPPYYQEE 306


>ref|NP_958434.1| calponin-2 isoform b [Homo sapiens].
          Length = 270

 Score =  322 bits (826), Expect = 5e-88
 Identities = 176/310 (56%), Positives = 200/310 (64%)
 Frame = +2

Query: 236  THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
            T FNKGPSYGLSAEVKN++ SKYD Q E +LR WIE +TG+SIG  FQ GLKDG ILC L
Sbjct: 4    TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIGPDFQKGLKDGTILCTL 63

Query: 416  INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
            +NKLQPGSV K+N S  NW QLEN+ NFIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64   MNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123

Query: 596  LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
            L+ALAG                                       +MGTNKCASQ+GMTA
Sbjct: 124  LLALAG---------------------------------------KMGTNKCASQSGMTA 144

Query: 776  YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
            YGTRRHLYDPK     P D +TISLQMGTNK ASQ GM APGTRR IYD KL     DNS
Sbjct: 145  YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 204

Query: 956  TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
            ++SLQMG  + A+Q G  V+GLGRQ+YDPKYC  P   V      GTG    +  D    
Sbjct: 205  SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGTVADGAPSGTG----DCPDPGEV 257

Query: 1136 AEYPDEYHGE 1165
             EYP  Y  E
Sbjct: 258  PEYPPYYQEE 267


>ref|NP_001001522.1| transgelin [Homo sapiens].
          Length = 201

 Score =  148 bits (373), Expect = 2e-35
 Identities = 86/197 (43%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
           NKGPSYG+S EV++KI  KYD + EE L  WI    G  +G        FQ+ LK+G+IL
Sbjct: 3   NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 62

Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
            +L+N L P   K V    N  S+ + Q+E +  F+KA + YG+   D+F+  DLFE  +
Sbjct: 63  SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKD 122

Query: 575 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
           M  VQ TL+AL  LA TK    +    +  +K A++  R F E +L+ G+ VIGLQMG+N
Sbjct: 123 MAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 182

Query: 746 KCASQAGMTAYGTRRHL 796
           + ASQAGMT YG  R +
Sbjct: 183 RGASQAGMTGYGRPRQI 199


>ref|NP_003177.2| transgelin [Homo sapiens].
          Length = 201

 Score =  148 bits (373), Expect = 2e-35
 Identities = 86/197 (43%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
           NKGPSYG+S EV++KI  KYD + EE L  WI    G  +G        FQ+ LK+G+IL
Sbjct: 3   NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 62

Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
            +L+N L P   K V    N  S+ + Q+E +  F+KA + YG+   D+F+  DLFE  +
Sbjct: 63  SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEGKD 122

Query: 575 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
           M  VQ TL+AL  LA TK    +    +  +K A++  R F E +L+ G+ VIGLQMG+N
Sbjct: 123 MAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 182

Query: 746 KCASQAGMTAYGTRRHL 796
           + ASQAGMT YG  R +
Sbjct: 183 RGASQAGMTGYGRPRQI 199


>ref|NP_037391.2| transgelin-3 [Homo sapiens].
          Length = 199

 Score =  145 bits (367), Expect = 8e-35
 Identities = 88/203 (43%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWI-----EEVTGMSIGTS-FQLGLKDGIIL 406
           N+GPSYGLS EV+ KI  KYD   E  L +WI     E++     G + FQ  L DG +L
Sbjct: 3   NRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGTVL 62

Query: 407 CELINKLQPGS---VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
           C+LIN L P     + K++ES + + Q+E I  F+KA + YG++  DIF+  DL+E  +M
Sbjct: 63  CKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDM 122

Query: 578 TQVQTTLVALAGLAKTKG----------FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIG 727
             VQ TL+AL  +A TK           FH       + A++  R F E +L+ GQ+VIG
Sbjct: 123 AAVQRTLMALGSVAVTKDDGCYRGEPSWFH-------RKAQQNRRGFSEEQLRQGQNVIG 175

Query: 728 LQMGTNKCASQAGMTAYGTRRHL 796
           LQMG+NK ASQAGMT YG  R +
Sbjct: 176 LQMGSNKGASQAGMTGYGMPRQI 198


>ref|NP_001008274.1| transgelin-3 [Homo sapiens].
          Length = 199

 Score =  145 bits (367), Expect = 8e-35
 Identities = 88/203 (43%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWI-----EEVTGMSIGTS-FQLGLKDGIIL 406
           N+GPSYGLS EV+ KI  KYD   E  L +WI     E++     G + FQ  L DG +L
Sbjct: 3   NRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGTVL 62

Query: 407 CELINKLQPGS---VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
           C+LIN L P     + K++ES + + Q+E I  F+KA + YG++  DIF+  DL+E  +M
Sbjct: 63  CKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDM 122

Query: 578 TQVQTTLVALAGLAKTKG----------FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIG 727
             VQ TL+AL  +A TK           FH       + A++  R F E +L+ GQ+VIG
Sbjct: 123 AAVQRTLMALGSVAVTKDDGCYRGEPSWFH-------RKAQQNRRGFSEEQLRQGQNVIG 175

Query: 728 LQMGTNKCASQAGMTAYGTRRHL 796
           LQMG+NK ASQAGMT YG  R +
Sbjct: 176 LQMGSNKGASQAGMTGYGMPRQI 198


>ref|NP_001008273.1| transgelin-3 [Homo sapiens].
          Length = 199

 Score =  145 bits (367), Expect = 8e-35
 Identities = 88/203 (43%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWI-----EEVTGMSIGTS-FQLGLKDGIIL 406
           N+GPSYGLS EV+ KI  KYD   E  L +WI     E++     G + FQ  L DG +L
Sbjct: 3   NRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGTVL 62

Query: 407 CELINKLQPGS---VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
           C+LIN L P     + K++ES + + Q+E I  F+KA + YG++  DIF+  DL+E  +M
Sbjct: 63  CKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDM 122

Query: 578 TQVQTTLVALAGLAKTKG----------FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIG 727
             VQ TL+AL  +A TK           FH       + A++  R F E +L+ GQ+VIG
Sbjct: 123 AAVQRTLMALGSVAVTKDDGCYRGEPSWFH-------RKAQQNRRGFSEEQLRQGQNVIG 175

Query: 728 LQMGTNKCASQAGMTAYGTRRHL 796
           LQMG+NK ASQAGMT YG  R +
Sbjct: 176 LQMGSNKGASQAGMTGYGMPRQI 198


>ref|NP_003555.1| transgelin-2 [Homo sapiens].
          Length = 199

 Score =  144 bits (364), Expect = 2e-34
 Identities = 84/196 (42%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
           N+GP+YGLS EV+ KI  +YD   E+ L  WI       +G       +FQ  LKDG +L
Sbjct: 3   NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 62

Query: 407 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
           CELIN L P     VKK+  S++ + Q+E I  F++A + YG+   DIF+  DL+E  NM
Sbjct: 63  CELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 122

Query: 578 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 748
             VQ TL+ L GLA  +    F    +   K +++  R F + +L+ G++VIGLQMGTN+
Sbjct: 123 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 182

Query: 749 CASQAGMTAYGTRRHL 796
            ASQAGMT YG  R +
Sbjct: 183 GASQAGMTGYGMPRQI 198


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,585,721
Number of extensions: 1565469
Number of successful extensions: 6320
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 6222
Number of HSP's successfully gapped: 19
Length of query: 532
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 425
Effective length of database: 14,770,016
Effective search space: 6277256800
Effective search space used: 6277256800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002246
         (1597 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_082320.1| calponin-3 [Mus musculus].                           661   0.0  
Alignment   gi|NP_034052.3| calponin-1 [Mus musculus].                           410   e-114
Alignment   gi|NP_031751.1| calponin-2 [Mus musculus].                           389   e-108
Alignment   gi|NP_062728.1| transgelin-3 [Mus musculus].                         145   7e-35
Alignment   gi|NP_848713.1| transgelin-2 [Mus musculus].                         145   7e-35
Alignment   gi|NP_035656.1| transgelin [Mus musculus].                           145   1e-34
Alignment   gi|NP_001001980.2| LIM and calponin homology domains-containing...    70   5e-12
Alignment   gi|NP_963287.2| LIM domain only 7 [Mus musculus].                     69   1e-11
Alignment   gi|NP_001028611.2| leucine-rich repeat and calponin homology do...    57   5e-08
Alignment   gi|NP_001106989.1| rho guanine nucleotide exchange factor 7 iso...    54   3e-07

>ref|NP_082320.1| calponin-3 [Mus musculus].
          Length = 330

 Score =  661 bits (1706), Expect = 0.0
 Identities = 324/330 (98%), Positives = 327/330 (99%), Gaps = 1/330 (0%)
 Frame = +2

Query: 233  MTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCE 412
            MTHFNKGPSYGLSAEVKNKIASKYD QAEEDLRNWIEEVTG+ IGT+FQLGLKDGIILCE
Sbjct: 1    MTHFNKGPSYGLSAEVKNKIASKYDQQAEEDLRNWIEEVTGLGIGTNFQLGLKDGIILCE 60

Query: 413  LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 592
            LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT
Sbjct: 61   LINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQT 120

Query: 593  TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 772
            TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT
Sbjct: 121  TLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMT 180

Query: 773  AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 952
            AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN
Sbjct: 181  AYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN 240

Query: 953  STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 1132
            STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY
Sbjct: 241  STISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDY 300

Query: 1133 QAEYPDEYHGEYPDDYPRDYQYG-DQGIDY 1219
            QAEYPDEYHGEYPDDYPR+YQYG DQGIDY
Sbjct: 301  QAEYPDEYHGEYPDDYPREYQYGDDQGIDY 330


>ref|NP_034052.3| calponin-1 [Mus musculus].
          Length = 297

 Score =  410 bits (1054), Expect = e-114
 Identities = 201/277 (72%), Positives = 231/277 (83%)
 Frame = +2

Query: 239  HFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCELI 418
            HFN+GP+YGLSAEVKNK+A KYDHQ E++LR WIE VTG  IG +F  GLKDGIILCE I
Sbjct: 5    HFNRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFI 64

Query: 419  NKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTL 598
            NKLQPGSVKKVNES+ NW QLENIGNFIKAI  YG+KPHDIFEANDLFEN N TQVQ+TL
Sbjct: 65   NKLQPGSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTL 124

Query: 599  VALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAY 778
            +ALA +AKTKG    +++GVKYAEKQ RRF+  KL+ G+++IGLQMGTNK ASQ GMTAY
Sbjct: 125  LALASMAKTKG--NKVNVGVKYAEKQERRFEPEKLREGRNIIGLQMGTNKFASQQGMTAY 182

Query: 779  GTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNST 958
            GTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQAGM APGT+R I++  L ++  D   
Sbjct: 183  GTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEHCDTLN 242

Query: 959  ISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEP 1069
            +SLQMG+NK ASQ+GM+VYGL RQVYDPKYC  P  P
Sbjct: 243  VSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLNPEYP 279


>ref|NP_031751.1| calponin-2 [Mus musculus].
          Length = 305

 Score =  389 bits (999), Expect = e-108
 Identities = 198/305 (64%), Positives = 230/305 (75%)
 Frame = +2

Query: 236  THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
            T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+SIG  FQ GLKDG+ILC L
Sbjct: 4    TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGVILCTL 63

Query: 416  INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
            +NKLQPGSV K+N S  NW QLEN+ NFIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64   MNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123

Query: 596  LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
            L+ALAG AKTKG  + +DIGVKY+EKQ R FD+  +KAGQ VIGLQMGTNKCASQ+GMTA
Sbjct: 124  LLALAGKAKTKGLQSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTNKCASQSGMTA 183

Query: 776  YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
            YGTRRHLYDPK     P D  TISLQMGTNK ASQ GM APGTRR IYD KL     DNS
Sbjct: 184  YGTRRHLYDPKNHILPPMDHCTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 243

Query: 956  TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
            ++SLQMG  + A+Q G  V+GLGRQ+YDPKYC            QG+  +G+   D   Q
Sbjct: 244  SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC-----------PQGSAADGAPAGDG--Q 289

Query: 1136 AEYPD 1150
             E P+
Sbjct: 290  GEAPE 294


>ref|NP_062728.1| transgelin-3 [Mus musculus].
          Length = 199

 Score =  145 bits (367), Expect = 7e-35
 Identities = 88/203 (43%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWI-----EEVTGMSIGTS-FQLGLKDGIIL 406
           N+GPSYGLS EV+ KI  KYD   E  L +WI     E++     G + FQ  L DG +L
Sbjct: 3   NRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGTVL 62

Query: 407 CELINKLQPGS---VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
           C+LIN L P     + K++ES + + Q+E I  F+KA + YG++  DIF+  DL+E  +M
Sbjct: 63  CKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEVYGVRTTDIFQTVDLWEGKDM 122

Query: 578 TQVQTTLVALAGLAKTKG----------FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIG 727
             VQ TL+AL  +A TK           FH       + A++  R F E +L+ GQ+VIG
Sbjct: 123 AAVQRTLMALGSVAVTKDDGCYRGEPSWFH-------RKAQQNRRGFSEEQLRQGQNVIG 175

Query: 728 LQMGTNKCASQAGMTAYGTRRHL 796
           LQMG+NK ASQAGMT YG  R +
Sbjct: 176 LQMGSNKGASQAGMTGYGMPRQI 198


>ref|NP_848713.1| transgelin-2 [Mus musculus].
          Length = 199

 Score =  145 bits (367), Expect = 7e-35
 Identities = 85/196 (43%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
           N+GPSYGLS EV+ KI  +YD   E+ L  WI       +G       +FQ  LKDG +L
Sbjct: 3   NRGPSYGLSREVQQKIEKQYDADLEQILIQWITTQCREDVGQPQPGRENFQKWLKDGTVL 62

Query: 407 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
           C+LIN L P     VKK+  SS+ + Q+E I  F++A + YG+   DIF+  DL+E  NM
Sbjct: 63  CKLINSLYPEGQAPVKKIQASSMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 122

Query: 578 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 748
             VQ TL+ L GLA  +    F    +   K +++  R F + +L+ G++VIGLQMGTN+
Sbjct: 123 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 182

Query: 749 CASQAGMTAYGTRRHL 796
            ASQAGMT YG  R +
Sbjct: 183 GASQAGMTGYGMPRQI 198


>ref|NP_035656.1| transgelin [Mus musculus].
          Length = 201

 Score =  145 bits (365), Expect = 1e-34
 Identities = 84/197 (42%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
           NKGPSYG+S EV++KI  KYD + EE L  WI    G  +G        FQ+ LK+G+IL
Sbjct: 3   NKGPSYGMSREVQSKIEKKYDEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVIL 62

Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
            +L+N L P   K V    N  S+ + Q+E +  F+KA + YG+   D+F+  DL+E  +
Sbjct: 63  SKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKD 122

Query: 575 MTQVQTTLVALAGLAKTK---GFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
           M  VQ TL+AL  LA TK    +    +  +K A++  R F + +L+ G+ VIGLQMG+N
Sbjct: 123 MAAVQRTLMALGSLAVTKNDGNYRGDPNWFMKKAQEHKRDFTDSQLQEGKHVIGLQMGSN 182

Query: 746 KCASQAGMTAYGTRRHL 796
           + ASQAGMT YG  R +
Sbjct: 183 RGASQAGMTGYGRPRQI 199


>ref|NP_001001980.2| LIM and calponin homology domains-containing protein 1 [Mus
           musculus].
          Length = 1057

 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
 Frame = +2

Query: 323 DLRNWIEEVTGMSIGTS-FQLGLKDGIILCELINKLQPGSVKKVNESSLNWPQLENIGNF 499
           + + WIE+VTG S G   F+ GL++GI+LCEL+N ++PG VKK+N        L+N   F
Sbjct: 26  EAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLDNTILF 85

Query: 500 IKAIQAYGMKPHDIFEANDLFENGNMTQVQ 589
           ++  +  G+K   +F+ +DL +  N   V+
Sbjct: 86  LRGCKELGLKESQLFDPSDLQDTSNRVTVK 115


>ref|NP_963287.2| LIM domain only 7 [Mus musculus].
          Length = 1699

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
 Frame = +2

Query: 323 DLRNWIEEVTGMSIGTS-FQLGLKDGIILCELINKLQPGSVKKVNESSLNWPQLENIGNF 499
           + + W+E VT  +  T+ F+  L++G++LC+LINKL+PG VKK+N  S     L+NI  F
Sbjct: 17  EAQRWVEAVTEKNFETTDFRASLENGVLLCDLINKLKPGVVKKINRLSTPIAGLDNINVF 76

Query: 500 IKAIQAYGMKPHDIFEANDLFENGNMTQVQ 589
           ++A +  G+K   +F   DL +  N   V+
Sbjct: 77  LRACEQIGLKEAQLFHPGDLQDLSNRVTVK 106


>ref|NP_001028611.2| leucine-rich repeat and calponin homology domain-containing protein 1
            [Mus musculus].
          Length = 709

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 20/194 (10%)
 Frame = +2

Query: 119  ERAPSISGCGHSSGP-------GAWKPSARNLRTRAQPLPAA-RIIMTHFNKGPSYGL-S 271
            E +PS+S   + + P       G+W P       +A+  P   +++  H    P   L S
Sbjct: 516  ENSPSVSPTANITAPFGLKPRSGSWCPEEVQGSLQAESSPRRPQLLSRHVFLRPQRNLES 575

Query: 272  AEVKNKIASKYDHQAEE-----DLRNWIEEVTGMSIGTSFQLGLKDGIILCELINKLQPG 436
             + +  I  K +   EE      LR  IE    +++       L DG++LC L N ++P 
Sbjct: 576  IDPQFTIRRKMEQMREEKELVEQLRESIEMRLKVTLHEDLGAALMDGVVLCHLANHVRPR 635

Query: 437  SVKKVNESSLNWPQL------ENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTL 598
            SV  ++  S   P+L       N+ NF++A +  G+    +   + + E   + +V TT+
Sbjct: 636  SVASIHVPSPAVPKLSMAKCRRNVENFLEACRKLGVPEEKLCLPHHILEEKGLVKVGTTV 695

Query: 599  VALAGLAKTKGFHT 640
             AL  +  TK   T
Sbjct: 696  QALLDVTVTKALFT 709


>ref|NP_001106989.1| rho guanine nucleotide exchange factor 7 isoform a [Mus musculus].
          Length = 782

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = +2

Query: 377 QLGLKDGIILCELINKLQPGSVKKVNESSLNWPQ-LENIGNFIKAIQAYGMKPHDIFEAN 553
           Q  LKDG++LC L+ +L PG+++KV     N  + L NI  F++A  A      + F+AN
Sbjct: 32  QASLKDGVVLCRLLERLLPGTIEKVYPEPRNESECLSNIREFLRACGA--SLRLETFDAN 89

Query: 554 DLFENGNMTQVQTTLVAL 607
           DL++  N  +V ++LV L
Sbjct: 90  DLYQGQNFNKVLSSLVTL 107


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,661,269
Number of extensions: 1310440
Number of successful extensions: 5256
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 5192
Number of HSP's successfully gapped: 12
Length of query: 532
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 426
Effective length of database: 12,433,743
Effective search space: 5296774518
Effective search space used: 5296774518
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002246
         (1597 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003125950.1| PREDICTED: calponin-3 [Sus scrofa].               805   0.0  
Alignment   gi|NP_999043.1| calponin-1 [Sus scrofa].                             410   e-114
Alignment   gi|XP_003354007.1| PREDICTED: calponin-2 isoform 1 [Sus scrofa].     391   e-109
Alignment   gi|XP_003354008.1| PREDICTED: calponin-2 isoform 2 [Sus scrofa].     320   1e-87
Alignment   gi|XP_003357356.1| PREDICTED: transgelin [Sus scrofa].               147   1e-35
Alignment   gi|XP_003129930.1| PREDICTED: transgelin isoform 2 [Sus scrofa].     147   1e-35
Alignment   gi|XP_003129929.1| PREDICTED: transgelin isoform 1 [Sus scrofa].     147   1e-35
Alignment   gi|XP_003361052.1| PREDICTED: transgelin-3-like isoform 2 [Sus ...   147   2e-35
Alignment   gi|XP_003361051.1| PREDICTED: transgelin-3-like isoform 1 [Sus ...   147   2e-35
Alignment   gi|XP_003355153.1| PREDICTED: transgelin-2-like isoform 2 [Sus ...   144   1e-34

>ref|XP_003125950.1| PREDICTED: calponin-3 [Sus scrofa].
          Length = 579

 Score =  805 bits (2079), Expect = 0.0
 Identities = 392/395 (99%), Positives = 392/395 (99%)
 Frame = +2

Query: 35   SAGPPPTEQPRHRPAPAVASGRLLRRPGERAPSISGCGHSSGPGAWKPSARNLRTRAQPL 214
            SAGPPPTEQPRHRPAPAVASGRLL RPGERAPSISGCGHSSGPGAWKPSARNLRTRAQPL
Sbjct: 185  SAGPPPTEQPRHRPAPAVASGRLLHRPGERAPSISGCGHSSGPGAWKPSARNLRTRAQPL 244

Query: 215  PAARIIMTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKD 394
            P  RIIMTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKD
Sbjct: 245  PGPRIIMTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKD 304

Query: 395  GIILCELINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
            GIILCELINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN
Sbjct: 305  GIILCELINKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 364

Query: 575  MTQVQTTLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCA 754
            MTQVQTTLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCA
Sbjct: 365  MTQVQTTLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCA 424

Query: 755  SQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLT 934
            SQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLT
Sbjct: 425  SQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLT 484

Query: 935  LQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSE 1114
            LQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSE
Sbjct: 485  LQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSE 544

Query: 1115 ISDSDYQAEYPDEYHGEYPDDYPRDYQYGDQGIDY 1219
            ISDSDYQAEYPDEYHGEYPDDYPRDYQYGDQGIDY
Sbjct: 545  ISDSDYQAEYPDEYHGEYPDDYPRDYQYGDQGIDY 579


>ref|NP_999043.1| calponin-1 [Sus scrofa].
          Length = 297

 Score =  410 bits (1053), Expect = e-114
 Identities = 200/277 (72%), Positives = 231/277 (83%)
 Frame = +2

Query: 239  HFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCELI 418
            HFN+GP+YGLSAEVKNK+A KYDHQ E++LR WIE VTG  IG +F  GLKDGIILCE I
Sbjct: 5    HFNRGPAYGLSAEVKNKLAQKYDHQQEQELREWIEGVTGRRIGNNFMDGLKDGIILCEFI 64

Query: 419  NKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTL 598
            NKLQPGSVKKVNES+ NW QLENIGNFIKAI  YG+KPHDIFEANDLFEN N TQVQ+TL
Sbjct: 65   NKLQPGSVKKVNESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTL 124

Query: 599  VALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAY 778
            +ALA +AKTKG    +++GVKYAEKQ R+F+  KL+ G+++IGLQMGTNK ASQ GMTAY
Sbjct: 125  LALASMAKTKG--NKVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGTNKFASQQGMTAY 182

Query: 779  GTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNST 958
            GTRRHLYDPK+ TD+P DQ TISLQMGTNKGASQAGM APGT+R I++  L ++  D   
Sbjct: 183  GTRRHLYDPKLGTDQPLDQATISLQMGTNKGASQAGMTAPGTKRQIFEPGLGMEHCDTLN 242

Query: 959  ISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEP 1069
            +SLQMG+NK ASQ+GM+VYGL RQVYDPKYC  P  P
Sbjct: 243  VSLQMGSNKGASQRGMTVYGLPRQVYDPKYCLTPEYP 279


>ref|XP_003354007.1| PREDICTED: calponin-2 isoform 1 [Sus scrofa].
          Length = 309

 Score =  391 bits (1004), Expect = e-109
 Identities = 198/306 (64%), Positives = 228/306 (74%)
 Frame = +2

Query: 236  THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
            T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+SIG  FQ GLKDGIILC L
Sbjct: 4    TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGIILCTL 63

Query: 416  INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
            +NKLQPGSV K+N S  NW QLEN+ NFIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64   MNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123

Query: 596  LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
            L+ALAG AKTKG  + +DIGVKY+EKQ R FD+  +KAGQ VIGLQMGTNKCASQ+GMTA
Sbjct: 124  LLALAGKAKTKGLQSDVDIGVKYSEKQQRNFDDATMKAGQCVIGLQMGTNKCASQSGMTA 183

Query: 776  YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
            YGTRRHLYDPK     P D +TISLQMGTNK ASQ GM APGTRR IYD KL     DNS
Sbjct: 184  YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 243

Query: 956  TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
            ++SLQMG  + A+Q G  V+GLGRQ+YDPKYC  P  P         G         +Y 
Sbjct: 244  SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGPAADGAPAAAGDCPGPGESPEYP 300

Query: 1136 AEYPDE 1153
              Y +E
Sbjct: 301  PYYQEE 306


>ref|XP_003354008.1| PREDICTED: calponin-2 isoform 2 [Sus scrofa].
          Length = 270

 Score =  320 bits (820), Expect = 1e-87
 Identities = 172/306 (56%), Positives = 198/306 (64%)
 Frame = +2

Query: 236  THFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTSFQLGLKDGIILCEL 415
            T FNKGPSYGLSAEVKN++ SKYD Q E +LR+WIE +TG+SIG  FQ GLKDGIILC L
Sbjct: 4    TQFNKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIGPDFQKGLKDGIILCTL 63

Query: 416  INKLQPGSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTT 595
            +NKLQPGSV K+N S  NW QLEN+ NFIKA+ +YGM P D+FEANDLFE+GNMTQVQ +
Sbjct: 64   MNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVS 123

Query: 596  LVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA 775
            L+ALAG                                       +MGTNKCASQ+GMTA
Sbjct: 124  LLALAG---------------------------------------KMGTNKCASQSGMTA 144

Query: 776  YGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNS 955
            YGTRRHLYDPK     P D +TISLQMGTNK ASQ GM APGTRR IYD KL     DNS
Sbjct: 145  YGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGTDKCDNS 204

Query: 956  TISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGSQGTGTNGSEISDSDYQ 1135
            ++SLQMG  + A+Q G  V+GLGRQ+YDPKYC  P  P         G         +Y 
Sbjct: 205  SMSLQMGYTQGANQSG-QVFGLGRQIYDPKYC--PQGPAADGAPAAAGDCPGPGESPEYP 261

Query: 1136 AEYPDE 1153
              Y +E
Sbjct: 262  PYYQEE 267


>ref|XP_003357356.1| PREDICTED: transgelin [Sus scrofa].
          Length = 213

 Score =  147 bits (372), Expect = 1e-35
 Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
           NKGPSYG+S EV++KI  KYD + EE L  WI    G  +G        FQ+ LK+G+IL
Sbjct: 15  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 74

Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
            +L+N L P   K V    N  S+ + Q+E +  F+KA + YG+   D+F+  DLFE  +
Sbjct: 75  SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 134

Query: 575 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
           +  VQ TL+AL  LA TK    +    +  +K A++  R F E +L+ G+ VIGLQMG+N
Sbjct: 135 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 194

Query: 746 KCASQAGMTAYGTRRHL 796
           + ASQAGMT YG  R +
Sbjct: 195 RGASQAGMTGYGRPRQI 211


>ref|XP_003129930.1| PREDICTED: transgelin isoform 2 [Sus scrofa].
          Length = 201

 Score =  147 bits (372), Expect = 1e-35
 Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
           NKGPSYG+S EV++KI  KYD + EE L  WI    G  +G        FQ+ LK+G+IL
Sbjct: 3   NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 62

Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
            +L+N L P   K V    N  S+ + Q+E +  F+KA + YG+   D+F+  DLFE  +
Sbjct: 63  SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 122

Query: 575 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
           +  VQ TL+AL  LA TK    +    +  +K A++  R F E +L+ G+ VIGLQMG+N
Sbjct: 123 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 182

Query: 746 KCASQAGMTAYGTRRHL 796
           + ASQAGMT YG  R +
Sbjct: 183 RGASQAGMTGYGRPRQI 199


>ref|XP_003129929.1| PREDICTED: transgelin isoform 1 [Sus scrofa].
          Length = 201

 Score =  147 bits (372), Expect = 1e-35
 Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
           NKGPSYG+S EV++KI  KYD + EE L  WI    G  +G        FQ+ LK+G+IL
Sbjct: 3   NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 62

Query: 407 CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 574
            +L+N L P   K V    N  S+ + Q+E +  F+KA + YG+   D+F+  DLFE  +
Sbjct: 63  SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 122

Query: 575 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 745
           +  VQ TL+AL  LA TK    +    +  +K A++  R F E +L+ G+ VIGLQMG+N
Sbjct: 123 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 182

Query: 746 KCASQAGMTAYGTRRHL 796
           + ASQAGMT YG  R +
Sbjct: 183 RGASQAGMTGYGRPRQI 199


>ref|XP_003361052.1| PREDICTED: transgelin-3-like isoform 2 [Sus scrofa].
          Length = 199

 Score =  147 bits (370), Expect = 2e-35
 Identities = 89/203 (43%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWI-----EEVTGMSIG-TSFQLGLKDGIIL 406
           N+GPSYGLS EV+ KI  KYD   E  L +WI     E++     G T FQ  L DG +L
Sbjct: 3   NRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRTHFQKWLMDGTVL 62

Query: 407 CELINKLQPGS---VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
           C+LIN L P     + K++ES + + Q+E I  F+KA + YG++  DIF+  DL+E  +M
Sbjct: 63  CKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWEGKDM 122

Query: 578 TQVQTTLVALAGLAKTKG----------FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIG 727
             VQ TL+AL  +A TK           FH       + A++  R F E +L+ GQ+VIG
Sbjct: 123 AAVQRTLMALGSVAVTKDDGCYRGEPSWFH-------RKAQQNRRGFSEEQLRQGQNVIG 175

Query: 728 LQMGTNKCASQAGMTAYGTRRHL 796
           LQMG+NK ASQAGMT YG  R +
Sbjct: 176 LQMGSNKGASQAGMTGYGMPRQI 198


>ref|XP_003361051.1| PREDICTED: transgelin-3-like isoform 1 [Sus scrofa].
          Length = 199

 Score =  147 bits (370), Expect = 2e-35
 Identities = 89/203 (43%), Positives = 119/203 (58%), Gaps = 19/203 (9%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWI-----EEVTGMSIG-TSFQLGLKDGIIL 406
           N+GPSYGLS EV+ KI  KYD   E  L +WI     E++     G T FQ  L DG +L
Sbjct: 3   NRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRTHFQKWLMDGTVL 62

Query: 407 CELINKLQPGS---VKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
           C+LIN L P     + K++ES + + Q+E I  F+KA + YG++  DIF+  DL+E  +M
Sbjct: 63  CKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWEGKDM 122

Query: 578 TQVQTTLVALAGLAKTKG----------FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIG 727
             VQ TL+AL  +A TK           FH       + A++  R F E +L+ GQ+VIG
Sbjct: 123 AAVQRTLMALGSVAVTKDDGCYRGEPSWFH-------RKAQQNRRGFSEEQLRQGQNVIG 175

Query: 728 LQMGTNKCASQAGMTAYGTRRHL 796
           LQMG+NK ASQAGMT YG  R +
Sbjct: 176 LQMGSNKGASQAGMTGYGMPRQI 198


>ref|XP_003355153.1| PREDICTED: transgelin-2-like isoform 2 [Sus scrofa].
          Length = 199

 Score =  144 bits (363), Expect = 1e-34
 Identities = 84/196 (42%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
 Frame = +2

Query: 245 NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT------SFQLGLKDGIIL 406
           N+GP+YGLS EV+ KI  +YD   E+ L  WI       +G       +FQ  LKDG +L
Sbjct: 3   NRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVL 62

Query: 407 CELINKLQP---GSVKKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNM 577
           CELIN L P     VKK+  S++ + Q+E I  F++A + YG+   DIF+  DL+E  NM
Sbjct: 63  CELINGLYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNM 122

Query: 578 TQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNK 748
             VQ TL+ L GLA  +    F    +   K +++  R F + +L+ G++VIGLQMGTN+
Sbjct: 123 ACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNR 182

Query: 749 CASQAGMTAYGTRRHL 796
            ASQAGMT YG  R +
Sbjct: 183 GASQAGMTGYGMPRQI 198


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,883,353
Number of extensions: 992109
Number of successful extensions: 4370
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4278
Number of HSP's successfully gapped: 22
Length of query: 532
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 428
Effective length of database: 8,754,644
Effective search space: 3746987632
Effective search space used: 3746987632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002246
         (1597 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                        1326   0.0  
Sscrofa_Chr02                                                         611   e-172
Sscrofa_Chr03                                                          94   3e-16

>Sscrofa_Chr04 
||          Length = 143465943

 Score = 1326 bits (669), Expect = 0.0
 Identities = 696/707 (98%), Gaps = 1/707 (0%)
 Strand = Plus / Minus

                                                                             
Query: 877       ccaggcgggcatgttggcaccaggcacccggagagacatctacgatcagaagctaacact 936
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134246408 ccaggcgggcatgttggcaccaggcacccggagagacatctacgatcagaagctaacact 134246349

                                                                             
Query: 937       acaacccgtggacaactcgacgatttcgctccagatgggcaccaacaaagtcgcttccca 996
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134246348 acaacccgtggacaactcgacgatttcgctccagatgggcaccaacaaagtcgcttccca 134246289

                                                                             
Query: 997       gaaaggcatgagcgtgtacgggcttgggcggcaagtgtacgaccccaaatactgcgctgc 1056
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134246288 gaaaggcatgagcgtgtacgggcttgggcggcaagtgtacgaccccaaatactgcgctgc 134246229

                                                                             
Query: 1057      tcccaccgaaccggtcattcacaacggaagccaaggaacgggaacgaatgggtcggaaat 1116
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134246228 tcccaccgaaccggtcattcacaacggaagccaaggaacgggaacgaatgggtcggaaat 134246169

                                                                             
Query: 1117      cagcgatagcgattatcaggcagagtaccccgatgagtatcatggcgagtacccggatga 1176
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134246168 cagcgatagcgattatcaggcagagtaccccgatgagtatcatggcgagtacccggatga 134246109

                                                                             
Query: 1177      ctaccccagagattatcaatacggcgaccagggcattgattattaggttcacgggggagc 1236
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134246108 ctaccccagagattatcaatacggcgaccagggcattgattattaggttcacgggggagc 134246049

                                                                             
Query: 1237      tcagcgtgtagcccgttgtcttattcagtgagaaccaagctagccttgagtaagttttta 1296
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134246048 tcagcgtgtagcccgttgtcttattcagtgagaaccaagctagccttgagtaagttttta 134245989

                                                                             
Query: 1297      atctcgtcttcctaaaacactattatgcttattctacctaaaggaaatattgccttacat 1356
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134245988 atctcgtcttcctaaaacactattatgcttattctacctaaaggaaatattgccttacat 134245929

                                                                             
Query: 1357      acattcctttttcctttttcagcctcttccctaaatagttgccttctagtgctgtaacag 1416
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134245928 acattcctttttcctttttcagcctcttccctaaatagttgccttctagtgctgtaacag 134245869

                                                                             
Query: 1417      ttaaatcctacagcataaccgataactcgcatatgaagtaaaaaggaagactgtgaaagg 1476
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134245868 ttaaatcctacagcataaccgataactcgcatatgaagtaaaaaggaagactgtgaaagg 134245809

                                                                             
Query: 1477      gaggactcttgtacagtcaattcttttattgnnnnnnnnntctatgcatttttacagtcc 1536
                 |||||||||||||||||||||||||||||||         ||||||||||||||||||||
Sbjct: 134245808 gaggactcttgtacagtcaattcttttattgaaaaaaaaatctatgcatttttacagtcc 134245749

                                                                
Query: 1537      tctacttaaaactggtattttcaaac-ataggaagcgtcctgntttg 1582
                 |||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 134245748 tctacttaaaactggtattttcaaacaataggaagcgtcctggtttg 134245702



 Score =  549 bits (277), Expect = e-153
 Identities = 286/289 (98%)
 Strand = Plus / Minus

                                                                             
Query: 1         agttcgtgcgggactccggcgccgactgggagcctctgcgggacctcctccgaccgagca 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134269265 agttcgtgcgggactccggcgccgactgggagcctctgcgggacctcctccgaccgagca 134269206

                                                                             
Query: 61        gccgaggcaccgccccgcgcccgccgtcgcgtccggacgactcctgcgccgcccagggga 120
                 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 134269205 gccgaggcaccgccccgcgcccgccgtcgcgtccggacgactcctgcaccgcccagggga 134269146

                                                                             
Query: 121       acgagctccgagcatctcggggtgcggccactcctcggggccaggagcgtggaagccaag 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134269145 acgagctccgagcatctcggggtgcggccactcctcggggccaggagcgtggaagccaag 134269086

                                                                             
Query: 181       tgctaggaacctccggacccgagctcagcctcttcccgccgcccgaatcatcatgaccca 240
                 |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 134269085 tgctaggaacctccggacccgagctcagcctcttcccggcccccgaatcatcatgaccca 134269026

                                                                  
Query: 241       cttcaacaagggcccttcctacgggctctcggccgaggtcaagaacaag 289
                 |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134269025 cttcaacaagggcccttcctacgggctctcggccgaggtcaagaacaag 134268977



 Score =  289 bits (146), Expect = 2e-75
 Identities = 149/150 (99%)
 Strand = Plus / Minus

                                                                             
Query: 732       agatgggaaccaacaaatgcgccagccaagcaggtatgacagcctacgggacgcggaggc 791
                 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 134247996 agatgggaaccaacaaatgcgccagccaagcaggtatgaccgcctacgggacgcggaggc 134247937

                                                                             
Query: 792       atctttatgatcccaaaatgcaaaccgacaaaccttttgatcagaccacgattagtctgc 851
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134247936 atctttatgatcccaaaatgcaaaccgacaaaccttttgatcagaccacgattagtctgc 134247877

                                               
Query: 852       agatgggcaccaacaaaggagccagccagg 881
                 ||||||||||||||||||||||||||||||
Sbjct: 134247876 agatgggcaccaacaaaggagccagccagg 134247847



 Score =  281 bits (142), Expect = 6e-73
 Identities = 142/142 (100%)
 Strand = Plus / Minus

                                                                             
Query: 476       cagctggagaatattggtaattttattaaagctattcaggcttatggtatgaagccacat 535
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134250573 cagctggagaatattggtaattttattaaagctattcaggcttatggtatgaagccacat 134250514

                                                                             
Query: 536       gacatatttgaagccaatgatctttttgagaatgggaacatgacccaggttcagacgacg 595
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134250513 gacatatttgaagccaatgatctttttgagaatgggaacatgacccaggttcagacgacg 134250454

                                       
Query: 596       ctggtggccctggcaggcctgg 617
                 ||||||||||||||||||||||
Sbjct: 134250453 ctggtggccctggcaggcctgg 134250432



 Score =  240 bits (121), Expect = 2e-60
 Identities = 124/125 (99%)
 Strand = Plus / Minus

                                                                             
Query: 288       agatcgcctccaagtatgaccaccaggcggaagaagatcttcgcaactggatagaggagg 347
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 134252070 agatcgcctccaagtatgaccaccaggcggaagaagatcttcgcaactggatagaagagg 134252011

                                                                             
Query: 348       tgacaggcatgagcattggcaccagctttcagctgggcctgaaagatggcataatcctct 407
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134252010 tgacaggcatgagcattggcaccagctttcagctgggcctgaaagatggcataatcctct 134251951

                      
Query: 408       gcgag 412
                 |||||
Sbjct: 134251950 gcgag 134251946



 Score =  226 bits (114), Expect = 3e-56
 Identities = 117/118 (99%)
 Strand = Plus / Minus

                                                                             
Query: 616       ggctaaaacaaaaggattccacaccaccattgacattggcgtgaagtacgcagaaaaaca 675
                 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 134250068 ggctaaaacaaaaggattccacaccaccattgacattggagtgaagtacgcagaaaaaca 134250009

                                                                           
Query: 676       aacaagacgtttcgatgaaggaaaattaaaagccggccagagtgtaattggcttgcag 733
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134250008 aacaagacgtttcgatgaaggaaaattaaaagccggccagagtgtaattggcttgcag 134249951



 Score =  133 bits (67), Expect = 3e-28
 Identities = 67/67 (100%)
 Strand = Plus / Minus

                                                                             
Query: 412       gctcataaacaagctgcagcccggctccgtgaagaaggtgaacgagtcctcattaaactg 471
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134251733 gctcataaacaagctgcagcccggctccgtgaagaaggtgaacgagtcctcattaaactg 134251674

                        
Query: 472       gcctcag 478
                 |||||||
Sbjct: 134251673 gcctcag 134251667


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  611 bits (308), Expect = e-172
 Identities = 1045/1290 (81%), Gaps = 78/1290 (6%)
 Strand = Plus / Minus

                                                                            
Query: 229      catcatgacccactt-caacaagggcccttcctacgggctctcggccgaggtcaagaaca 287
                ||||||||| ||||| ||||||  ||||||||||| ||||||| || ||| || | ||||
Sbjct: 52689047 catcatgactcactttcaacaacagcccttcctacaggctctcagctgagatccaaaaca 52688988

                                                                            
Query: 288      agatcgcctccaagtatgaccaccaggcggaagaagatcttcgcaactggatagaggagg 347
                |||| || ||||||| |||  | ||||| |||||||||||| |||||||||||   ||||
Sbjct: 52688987 agattgcttccaagtgtgattatcaggcagaagaagatctttgcaactggatat--gagg 52688930

                                                                            
Query: 348      tgacaggcatgagcattggcaccagctttcagctgggcctgaaagatggcataatcctct 407
                ||||||||| ||||| || ||||| ||||||||||||        |||||| ||| ||| 
Sbjct: 52688929 tgacaggcaagagcactgacaccaactttcagctggg--------atggcaaaattctcc 52688878

                                                                            
Query: 408      gcgagctcataaacaagctgcagcccggctccgtgaagaaggtgaacgagtcctcattaa 467
                 ||| || |||||||||||  |||||||||  ||||||||||  |||           ||
Sbjct: 52688877 acgaactaataaacaagctatagcccggcttggtgaagaaggccaac-----------aa 52688829

                                                                            
Query: 468      actggcctcagctggagaatattggtaattttattaaagctattcaggcttatggtatga 527
                ||||||||||||||||||||||  | || |||| ||||||||||||||||||||||| ||
Sbjct: 52688828 actggcctcagctggagaatatgagcaactttactaaagctattcaggcttatggtagga 52688769

                                                                            
Query: 528      agccacatgacatatttgaagccaatgatctttttgagaatgggaacatgacccaggttc 587
                || ||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 52688768 agtcacgtgacatatttgaagcctatgatctttttgagcatgggaacatgacccaggttc 52688709

                                                                            
Query: 588      agacgacgctggtggccctggcaggcctggctaaaacaaaaggattccacaccaccattg 647
                |||| | |||||||||||| ||||   |||||||||||||||||| ||| || || ||||
Sbjct: 52688708 agactatgctggtggccctagcagatatggctaaaacaaaaggataccatacaactattg 52688649

                                                                            
Query: 648      acattggcgtgaagtacgcagaaaaacaaacaagacgtttcgatgaaggaaaattaaaag 707
                ||||| |||| ||| | ||||||||    ||||||| ||| |||||||||||||||||||
Sbjct: 52688648 acattagcgttaagcatgcagaaaa----acaagacattttgatgaaggaaaattaaaag 52688593

                                                                            
Query: 708      ccggccagagtgtaattggcttgcagatgggaaccaacaaatgcgccagccaagcaggta 767
                | || || |||| || ||  ||||| ||||||||||||| ||| ||||||||||||||||
Sbjct: 52688592 ctggtcaaagtgaaactgctttgcacatgggaaccaacacatgtgccagccaagcaggta 52688533

                                                                            
Query: 768      tgacagcctacgggacgcggaggcatctttatgatcccaaaatgcaaaccgacaaacctt 827
                  |||||||||| |||  ||||||||| |||||||||| |||||||||| || |||||||
Sbjct: 52688532 caacagcctacgcgactaggaggcatccttatgatccccaaatgcaaactgaaaaacctt 52688473

                                                                            
Query: 828      ttgatcagaccacgattagtctgcagatgggcaccaacaaaggagccagccaggcgggca 887
                 ||||||||||| ||    |||||||| |||||  ||||||| ||||||||| || || |
Sbjct: 52688472 ctgatcagaccagga----tctgcagacgggcatgaacaaagaagccagcca-gctggga 52688418

                                                                            
Query: 888      tgttggcaccaggcacccggagagacatctacgatcagaagctaacactacaacccgtgg 947
                |||| |||||| | ||||| ||||||| ||  ||||||||||||||| ||||||  ||||
Sbjct: 52688417 tgttagcaccaagtacccgaagagacagctgtgatcagaagctaacattacaacttgtgg 52688358

                                                                            
Query: 948      acaactcgacgatttcgctccagatgggcaccaacaaagtcgcttcccagaaaggcatga 1007
                |||| ||||| ||||| || |||||| | ||||||||||||||||||| |||||| | ||
Sbjct: 52688357 acaattcgacaatttctctacagatgtgtaccaacaaagtcgcttcccggaaaggaaaga 52688298

                                                                            
Query: 1008     gcgtgtacgggcttgggcggcaagtgtacgaccccaaatactgcgctgctcccaccgaac 1067
                | ||||| || |         | || || || ||||||||||| ||||||||||| ||  
Sbjct: 52688297 gtgtgtatggtc--------aaggtatatgatcccaaatactgtgctgctcccacagagt 52688246

                                                                            
Query: 1068     cggtcattcacaacggaagccaaggaacgggaacgaatgggtcggaaatcagcgatagcg 1127
                | | |||||||||  |||||| |||||| ||||| |||||||||| |||||| || || |
Sbjct: 52688245 ctgacattcacaatagaagcc-aggaacaggaacaaatgggtcgggaatcagtgacagtg 52688187

                                                                            
Query: 1128     attatcaggcagagtaccccgatgagtatcatggcgagtacccggatgactaccccagag 1187
                |||||||||  || || ||  |||| | ||||||| | ||||  ||||||||||| | ||
Sbjct: 52688186 attatcaggaggactaaccacatgaat-tcatggcaactaccaagatgactaccctaaag 52688128

                                                                            
Query: 1188     at----tatcaatacggcgaccagggcattgattattaggttcacgggggagctcagcgt 1243
                ||    |||||||| || ||||| |||| |||||||||| ||||| | |||||||||   
Sbjct: 52688127 attatctatcaatatggagaccaaggcactgattattagattcacagaggagctcag--- 52688071

                                                                            
Query: 1244     gtagcccgttgtcttattcagtgagaaccaagctagccttgagtaagtttttaatctcgt 1303
                                ||||||||||| ||||||||||||||||||  |||| | |||||
Sbjct: 52688070 ----------------ttcagtgagaaacaagctagccttgagtaa--tttttacctcgt 52688029

                                                                            
Query: 1304     cttcctaaaacactattatgcttattctacctaaaggaaatattgccttacatacattcc 1363
                |||||||||||| |||||||||||| |||||||| ||||||||||||||||||| |||| 
Sbjct: 52688028 cttcctaaaacattattatgcttatcctacctaatggaaatattgccttacatatattct 52687969

                                                                            
Query: 1364     tttttcctttttcagcctcttcc------ctaaatagttgccttctagtgctgtaacagt 1417
                ||||||||||||| |||||||||       ||||||| |||||| |||||||||||||||
Sbjct: 52687968 tttttcctttttctgcctcttccgtaaatataaatagctgccttttagtgctgtaacagt 52687909

                                                                            
Query: 1418     taaatcctacagcataaccgataactcgcatatgaagtaaaaaggaagactgtgaaag-g 1476
                | |||||||||||||||||  |||||| |     | |||||||||||||||||||||| |
Sbjct: 52687908 ttaatcctacagcataaccagtaactcac-----aggtaaaaaggaagactgtgaaagag 52687854

                                              
Query: 1477     gaggactcttgtacagtcaattcttttatt 1506
                ||| || |||||||||||||||||||||||
Sbjct: 52687853 gagtacccttgtacagtcaattcttttatt 52687824



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                             
Query: 242      ttcaacaagggcccttcctacgggctctcggccgaggtcaagaac 286
                ||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 77612161 ttcaacaaggggccctcgtacgggctctcggccgaggtcaagaac 77612205



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                  
Query: 848      ctgcagatgggcaccaacaaaggagccagccagg 881
                |||||||||||||||||||| |||||||||||||
Sbjct: 70543156 ctgcagatgggcaccaacaagggagccagccagg 70543189



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 848      ctgcagatgggcaccaacaaaggagccagccaggcgggcatg 889
                ||||||||||||||||||||| | ||||||||| ||||||||
Sbjct: 77619671 ctgcagatgggcaccaacaaatgtgccagccagtcgggcatg 77619712


>Sscrofa_Chr03 
||          Length = 144787322

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                            
Query: 1302     gtcttcctaaaacactattatgcttattctacctaaaggaaatattgccttacatacatt 1361
                ||||||||||||||||| |||||||||| ||||||||||||| | ||||||||| |||||
Sbjct: 55751746 gtcttcctaaaacactactatgcttattttacctaaaggaaacagtgccttacaaacatt 55751687

                       
Query: 1362     ccttttt 1368
                |||||||
Sbjct: 55751686 ccttttt 55751680


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,838,843
Number of extensions: 290
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 18
Length of query: 1597
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1575
Effective length of database: 2,808,408,574
Effective search space: 4423243504050
Effective search space used: 4423243504050
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)