Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002252
(1316 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776957.2| dnaJ homolog subfamily B member 6 [Bos taurus]. 273 2e-73
Alignment gi|NP_001093200.1| dnaJ homolog subfamily B member 7 [Bos tauru... 176 4e-44
Alignment gi|NP_001069384.1| dnaJ homolog subfamily B member 3 [Bos tauru... 155 1e-37
Alignment gi|XP_002697194.1| PREDICTED: DnaJ homolog, subfamily B, member... 149 5e-36
Alignment gi|XP_596872.2| PREDICTED: DnaJ homolog, subfamily B, member 8-... 149 5e-36
Alignment gi|NP_001029764.1| dnaJ homolog subfamily B member 2 [Bos tauru... 128 1e-29
Alignment gi|NP_001073112.1| sterile alpha motif domain-containing protei... 100 4e-21
Alignment gi|NP_001014959.1| dnaJ homolog subfamily B member 5 [Bos tauru... 96 7e-20
Alignment gi|NP_001015637.1| dnaJ homolog subfamily A member 1 [Bos tauru... 96 9e-20
Alignment gi|XP_002700026.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily A... 96 9e-20
>ref|NP_776957.2| dnaJ homolog subfamily B member 6 [Bos taurus].
Length = 242
Score = 273 bits (698), Expect = 2e-73
Identities = 151/242 (62%), Positives = 155/242 (64%), Gaps = 1/242 (0%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK
Sbjct: 1 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGGRXXXXXXXXXXXXX 544
KRDIYD+Y SHFDSPFEFGFTFRNP+DVFREFFGGR
Sbjct: 61 KRDIYDRYGKEGLNGGGGGGSHFDSPFEFGFTFRNPEDVFREFFGGRDPFSFDFFEDPFE 120
Query: 545 XXXGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGH-XXXXXXXXXX 721
G+ LGH
Sbjct: 121 DFFGHRRGPRGSRSRGTGSFFSTFSGFPSFGGAFPSFDAGFSSFGSLGHGGLTAFSSSSA 180
Query: 722 XXXXXXXNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLD 901
NYKSISTSTK+VNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLD
Sbjct: 181 FGGSGMGNYKSISTSTKVVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLD 240
Query: 902 NK 907
NK
Sbjct: 241 NK 242
>ref|NP_001093200.1| dnaJ homolog subfamily B member 7 [Bos taurus].
Length = 304
Score = 176 bits (446), Expect = 4e-44
Identities = 105/231 (45%), Positives = 121/231 (52%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYY+VLG++RHAS EDIKKAYRK+ALKWHPDKNPENKEEAERKFK+VAEAYEVLS +
Sbjct: 1 MVDYYQVLGLERHASPEDIKKAYRKVALKWHPDKNPENKEEAERKFKEVAEAYEVLSHDE 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGGRXXXXXXXXXXXXX 544
KRDIYDKY S FD E+GFTFR PDDVF+E FG R
Sbjct: 61 KRDIYDKY--GKEGLNGGGGSDFDDSSEYGFTFRKPDDVFKEIFGERDPFSFHFFEDSLE 118
Query: 545 XXXGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGHXXXXXXXXXXX 724
N LGH
Sbjct: 119 DLLNN-SRSSYGSRNRGARSFFSTSSEYPVFERFSSYDIGYTPFGSLGHEGLYSFSSLAF 177
Query: 725 XXXXXXNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTING 877
NY +++TS K+VNGR TKRI E+ ER E+DG+LKS +NG
Sbjct: 178 DDSGMDNYITVTTSGKIVNGRNTNTKRITEDDLER--DEDDGELKSFLLNG 226
>ref|NP_001069384.1| dnaJ homolog subfamily B member 3 [Bos taurus].
Length = 244
Score = 155 bits (391), Expect = 1e-37
Identities = 78/111 (70%), Positives = 86/111 (77%), Gaps = 4/111 (3%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGV R AS+E IKKAYRKLALKWHPDKNPENKEEAER+FKQVA+AYEVLSDAK
Sbjct: 1 MVDYYEVLGVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAQAYEVLSDAK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXS----HFDSPFEFGFTFRNPDDVFREFFGGR 505
KRD+YD+Y + F+ PFE FTFR+P DVFREFFG R
Sbjct: 61 KRDVYDRYGEAGVEGGGGGRAGGGRPFEDPFECIFTFRDPADVFREFFGSR 111
Score = 88.2 bits (217), Expect = 1e-17
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = +2
Query: 743 NYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDNK 907
N+KS+STST+++NG+ ITTKRIVENGQER+EVEEDG+LKSL INGKEQLL D K
Sbjct: 190 NFKSMSTSTEIMNGKMITTKRIVENGQERIEVEEDGELKSLIINGKEQLLSTDTK 244
>ref|XP_002697194.1| PREDICTED: DnaJ homolog, subfamily B, member 8-like [Bos taurus].
Length = 231
Score = 149 bits (376), Expect = 5e-36
Identities = 72/106 (67%), Positives = 83/106 (78%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
M +YYEVLGVQ AS EDIKKAYRKLAL+WHPDKNP+NKEEAE+KFKQV+EAYEVLSD+K
Sbjct: 1 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSDSK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
KR +YD+ H SPF G+TFRNP+D+FREFFGG
Sbjct: 61 KRSLYDRAGCDGWRLGGTGSPH-GSPFGGGYTFRNPEDIFREFFGG 105
Score = 87.0 bits (214), Expect = 3e-17
Identities = 41/54 (75%), Positives = 50/54 (92%)
Frame = +2
Query: 746 YKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDNK 907
+KS+ +ST++VNG K+TTKRIVENGQERVEVEEDGQL S+TINGKEQL R+D+K
Sbjct: 178 FKSVMSSTEIVNGHKVTTKRIVENGQERVEVEEDGQLTSVTINGKEQLKRVDSK 231
>ref|XP_596872.2| PREDICTED: DnaJ homolog, subfamily B, member 8-like [Bos taurus].
Length = 231
Score = 149 bits (376), Expect = 5e-36
Identities = 72/106 (67%), Positives = 83/106 (78%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
M +YYEVLGVQ AS EDIKKAYRKLAL+WHPDKNP+NKEEAE+KFKQV+EAYEVLSD+K
Sbjct: 1 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSDSK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
KR +YD+ H SPF G+TFRNP+D+FREFFGG
Sbjct: 61 KRSLYDRAGCDGWRLGGTGSPH-GSPFGGGYTFRNPEDIFREFFGG 105
Score = 87.0 bits (214), Expect = 3e-17
Identities = 41/54 (75%), Positives = 50/54 (92%)
Frame = +2
Query: 746 YKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDNK 907
+KS+ +ST++VNG K+TTKRIVENGQERVEVEEDGQL S+TINGKEQL R+D+K
Sbjct: 178 FKSVMSSTEIVNGHKVTTKRIVENGQERVEVEEDGQLTSVTINGKEQLKRVDSK 231
>ref|NP_001029764.1| dnaJ homolog subfamily B member 2 [Bos taurus].
Length = 278
Score = 128 bits (321), Expect = 1e-29
Identities = 65/108 (60%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
M YYE+L V R ASA+DIKKAYRK AL+WHPDKNP+NKE AE+KFK+VAEAYEVLSD
Sbjct: 1 MASYYEILDVPRSASADDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPF---EFGFTFRNPDDVFREFFG 499
KR+IYD Y S ++ F FTFR+P++VFREFFG
Sbjct: 61 KREIYDLYGREGLTGAGTGPSRAEAGSGGPGFTFTFRSPEEVFREFFG 108
Score = 73.6 bits (179), Expect = 4e-13
Identities = 34/44 (77%), Positives = 41/44 (93%)
Frame = +2
Query: 746 YKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTING 877
++S+STST V GR+ITT+RI+ENGQERVEVEEDGQLKS+TING
Sbjct: 164 FRSVSTSTTFVQGRRITTRRIMENGQERVEVEEDGQLKSVTING 207
>ref|NP_001073112.1| sterile alpha motif domain-containing protein 13 [Bos taurus].
Length = 195
Score = 100 bits (248), Expect = 4e-21
Identities = 48/66 (72%), Positives = 57/66 (86%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MV+YY+VLGV ++AS+ DIKKAY +LAL+ HPDKN EN+E AE KFKQ+AEAY VLSDAK
Sbjct: 1 MVNYYKVLGVPQNASSSDIKKAYHQLALQVHPDKNSENREAAEEKFKQIAEAYAVLSDAK 60
Query: 365 KRDIYD 382
KRD YD
Sbjct: 61 KRDNYD 66
>ref|NP_001014959.1| dnaJ homolog subfamily B member 5 [Bos taurus].
Length = 348
Score = 95.9 bits (237), Expect = 7e-20
Identities = 52/105 (49%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Frame = +2
Query: 191 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 370
DYY++LG+ A+ ++IKKAYRK+ALK+HPDKN E AE KFK++AEAY+VLSD KKR
Sbjct: 4 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKE--PNAEEKFKEIAEAYDVLSDPKKR 61
Query: 371 DIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFR-NPDDVFREFFGG 502
+YD+Y S S F +TF +P F FFGG
Sbjct: 62 GLYDQY--GEEGLKTGGGSSGGSSGSFHYTFHGDPHATFASFFGG 104
>ref|NP_001015637.1| dnaJ homolog subfamily A member 1 [Bos taurus].
Length = 397
Score = 95.5 bits (236), Expect = 9e-20
Identities = 52/103 (50%), Positives = 66/103 (64%)
Frame = +2
Query: 194 YYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRD 373
YY+VLGV+ +A+ E++KKAYRKLALK+HPDKNP E KFKQ+++AYEVLSDAKKR+
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE----KFKQISQAYEVLSDAKKRE 62
Query: 374 IYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
+YDK G F +P D+F FFGG
Sbjct: 63 LYDKGGEQAIKEGGA-----------GGGFGSPMDIFDMFFGG 94
>ref|XP_002700026.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily A, member 1-like [Bos
taurus].
Length = 397
Score = 95.5 bits (236), Expect = 9e-20
Identities = 52/103 (50%), Positives = 66/103 (64%)
Frame = +2
Query: 194 YYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRD 373
YY+VLGV+ +A+ E++KKAYRKLALK+HPDKNP E KFKQ+++AYEVLSDAKKR+
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE----KFKQISQAYEVLSDAKKRE 62
Query: 374 IYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
+YDK G F +P D+F FFGG
Sbjct: 63 LYDKGGEQAIKEGGA-----------GGGFGSPMDIFDMFFGG 94
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,326,243
Number of extensions: 990639
Number of successful extensions: 3544
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 3486
Number of HSP's successfully gapped: 61
Length of query: 438
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 333
Effective length of database: 14,207,134
Effective search space: 4730975622
Effective search space used: 4730975622
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002252
(1316 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861662.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 270 2e-72
Alignment gi|XP_861635.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 251 1e-66
Alignment gi|XP_850522.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 251 1e-66
Alignment gi|XP_546188.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 192 8e-49
Alignment gi|XP_852935.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 154 1e-37
Alignment gi|XP_531723.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 154 2e-37
Alignment gi|XP_851811.1| PREDICTED: similar to DnaJ homolog, subfamily B... 151 2e-36
Alignment gi|XP_537106.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 97 3e-20
Alignment gi|XP_866030.1| PREDICTED: similar to DnaJ homolog subfamily B ... 96 8e-20
Alignment gi|XP_531984.1| PREDICTED: similar to DnaJ homolog subfamily B ... 96 8e-20
>ref|XP_861662.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 6
isoform b isoform 3 [Canis familiaris].
Length = 241
Score = 270 bits (690), Expect = 2e-72
Identities = 147/241 (60%), Positives = 153/241 (63%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK
Sbjct: 1 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGGRXXXXXXXXXXXXX 544
KRDIYD+Y HFD+PFEFGFTFRNPDDVFREFFGGR
Sbjct: 61 KRDIYDRYGKEGLNGGGGGGLHFDTPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFE 120
Query: 545 XXXGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGHXXXXXXXXXXX 724
G+ GH
Sbjct: 121 DFFGSRRGPRGSRNRGTGSFFSAFSGFPSFGGGFSSFDTGFTSFASPGHGGLTSFSSTTF 180
Query: 725 XXXXXXNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDN 904
N+KSISTSTKMVNGRKITTKRIVENG+ERVEVEE+GQLKSLTINGKEQLLRLDN
Sbjct: 181 GGSGMGNFKSISTSTKMVNGRKITTKRIVENGEERVEVEENGQLKSLTINGKEQLLRLDN 240
Query: 905 K 907
K
Sbjct: 241 K 241
>ref|XP_861635.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 6
isoform a isoform 2 [Canis familiaris].
Length = 328
Score = 251 bits (641), Expect = 1e-66
Identities = 137/231 (59%), Positives = 143/231 (61%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK
Sbjct: 1 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGGRXXXXXXXXXXXXX 544
KRDIYD+Y HFD+PFEFGFTFRNPDDVFREFFGGR
Sbjct: 61 KRDIYDRYGKEGLNGGGGGGLHFDTPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFE 120
Query: 545 XXXGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGHXXXXXXXXXXX 724
G+ GH
Sbjct: 121 DFFGSRRGPRGSRNRGTGSFFSAFSGFPSFGGGFSSFDTGFTSFASPGHGGLTSFSSTTF 180
Query: 725 XXXXXXNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTING 877
N+KSISTSTKMVNGRKITTKRIVENG+ERVEVEE+GQLKSLTING
Sbjct: 181 GGSGMGNFKSISTSTKMVNGRKITTKRIVENGEERVEVEENGQLKSLTING 231
>ref|XP_850522.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 6
isoform a isoform 1 [Canis familiaris].
Length = 336
Score = 251 bits (641), Expect = 1e-66
Identities = 137/231 (59%), Positives = 143/231 (61%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK
Sbjct: 1 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGGRXXXXXXXXXXXXX 544
KRDIYD+Y HFD+PFEFGFTFRNPDDVFREFFGGR
Sbjct: 61 KRDIYDRYGKEGLNGGGGGGLHFDTPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFE 120
Query: 545 XXXGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGHXXXXXXXXXXX 724
G+ GH
Sbjct: 121 DFFGSRRGPRGSRNRGTGSFFSAFSGFPSFGGGFSSFDTGFTSFASPGHGGLTSFSSTTF 180
Query: 725 XXXXXXNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTING 877
N+KSISTSTKMVNGRKITTKRIVENG+ERVEVEE+GQLKSLTING
Sbjct: 181 GGSGMGNFKSISTSTKMVNGRKITTKRIVENGEERVEVEENGQLKSLTING 231
>ref|XP_546188.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 6
isoform a [Canis familiaris].
Length = 252
Score = 192 bits (487), Expect = 8e-49
Identities = 92/107 (85%), Positives = 94/107 (87%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK
Sbjct: 1 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGGR 505
KRDIYD+Y HFD+PFEFGFTFRNPDDVFREFFGGR
Sbjct: 61 KRDIYDRYGKEGLNGGGGGGLHFDTPFEFGFTFRNPDDVFREFFGGR 107
>ref|XP_852935.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 3
[Canis familiaris].
Length = 281
Score = 154 bits (390), Expect = 1e-37
Identities = 76/108 (70%), Positives = 87/108 (80%)
Frame = +2
Query: 182 NMVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDA 361
+MVDYYEVLGV R ASAE IKKAYRKLAL+WHPDKNPENKEEAER+FKQVA+AYEVLSDA
Sbjct: 43 DMVDYYEVLGVPRRASAEAIKKAYRKLALRWHPDKNPENKEEAERRFKQVAQAYEVLSDA 102
Query: 362 KKRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGGR 505
+KRD+YD+Y D PFE+ FTFR+P +VFREFFGG+
Sbjct: 103 RKRDVYDRYGEAGVEGGGGSGPCHD-PFEYVFTFRDPAEVFREFFGGQ 149
Score = 95.5 bits (236), Expect = 1e-19
Identities = 46/55 (83%), Positives = 52/55 (94%)
Frame = +2
Query: 743 NYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDNK 907
N+KS+STST++VNG+KITTKR VENGQERVEVEEDG+LKSL INGKEQLLRLD K
Sbjct: 227 NFKSVSTSTEIVNGKKITTKRTVENGQERVEVEEDGELKSLVINGKEQLLRLDTK 281
>ref|XP_531723.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 7
[Canis familiaris].
Length = 309
Score = 154 bits (389), Expect = 2e-37
Identities = 76/105 (72%), Positives = 83/105 (79%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGVQR+AS EDIKKAY K+ALKWHPDKNPENKEEAERKFK+VAEAYEVLS+ +
Sbjct: 1 MVDYYEVLGVQRYASPEDIKKAYHKVALKWHPDKNPENKEEAERKFKEVAEAYEVLSNNE 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFG 499
KRDIYDKY SHF+ E+ FTFR P DVFRE FG
Sbjct: 61 KRDIYDKY--GQEGLNGGDRSHFEDSSEYSFTFRKPSDVFREIFG 103
Score = 57.0 bits (136), Expect = 4e-08
Identities = 29/65 (44%), Positives = 37/65 (56%)
Frame = +2
Query: 683 LGHXXXXXXXXXXXXXXXXXNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKS 862
LGH NY S++TS+K+ NGR T+ I+EN QER VE+DG+LKS
Sbjct: 162 LGHEGLNSFSSLAFDDSGMGNYISVTTSSKIANGRNTNTQSIIENDQEREVVEDDGELKS 221
Query: 863 LTING 877
ING
Sbjct: 222 FFING 226
>ref|XP_851811.1| PREDICTED: similar to DnaJ homolog, subfamily B, member 8 [Canis
familiaris].
Length = 233
Score = 151 bits (381), Expect = 2e-36
Identities = 69/106 (65%), Positives = 84/106 (79%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
M +YYEVLGVQ AS EDIKKAYRKLAL+WHPDKNP+NKEEAE++FKQV+EAYEVLSD K
Sbjct: 1 MANYYEVLGVQSSASPEDIKKAYRKLALRWHPDKNPDNKEEAEKQFKQVSEAYEVLSDTK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
+R +YD+ + + SPF+ G+TFRNP+D+FREFFGG
Sbjct: 61 RRSVYDRAGCDSWRAGGGASAPYGSPFDAGYTFRNPEDIFREFFGG 106
Score = 91.7 bits (226), Expect = 1e-18
Identities = 43/54 (79%), Positives = 51/54 (94%)
Frame = +2
Query: 746 YKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDNK 907
+KS+ +ST+MVNG K+TTKRIVENGQER+EVEEDGQLKS+TINGKEQL R+DNK
Sbjct: 180 FKSVMSSTEMVNGHKVTTKRIVENGQERMEVEEDGQLKSVTINGKEQLKRVDNK 233
>ref|XP_537106.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 4
isoform 1 [Canis familiaris].
Length = 337
Score = 97.4 bits (241), Expect = 3e-20
Identities = 53/104 (50%), Positives = 65/104 (62%)
Frame = +2
Query: 191 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 370
DYY +LG+++ AS EDIKKAYRK ALK+HPDKN +AE KFK+VAEAYEVLSD KKR
Sbjct: 4 DYYCILGIEKGASDEDIKKAYRKQALKFHPDKN--KSPQAEEKFKEVAEAYEVLSDPKKR 61
Query: 371 DIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
+IYD++ F + F +P F FFGG
Sbjct: 62 EIYDQFGEEGLKGGAGGTDGQGGTFRYTF-HGDPHATFAAFFGG 104
>ref|XP_866030.1| PREDICTED: similar to DnaJ homolog subfamily B member 5 (Heat shock
protein Hsp40-3) (Heat shock protein cognate 40) (Hsc40)
(Hsp40-2) isoform 3 [Canis familiaris].
Length = 420
Score = 95.9 bits (237), Expect = 8e-20
Identities = 52/105 (49%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Frame = +2
Query: 191 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 370
DYY++LG+ A+ ++IKKAYRK+ALK+HPDKN E AE KFK++AEAY+VLSD KKR
Sbjct: 76 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKE--PNAEEKFKEIAEAYDVLSDPKKR 133
Query: 371 DIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFR-NPDDVFREFFGG 502
+YD+Y S S F +TF +P F FFGG
Sbjct: 134 GLYDQY--GEEGLKTGGGSSGGSSGSFHYTFHGDPHATFASFFGG 176
>ref|XP_531984.1| PREDICTED: similar to DnaJ homolog subfamily B member 5 (Heat shock
protein Hsp40-3) (Heat shock protein cognate 40) (Hsc40)
(Hsp40-2) isoform 1 [Canis familiaris].
Length = 348
Score = 95.9 bits (237), Expect = 8e-20
Identities = 52/105 (49%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Frame = +2
Query: 191 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 370
DYY++LG+ A+ ++IKKAYRK+ALK+HPDKN E AE KFK++AEAY+VLSD KKR
Sbjct: 4 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKE--PNAEEKFKEIAEAYDVLSDPKKR 61
Query: 371 DIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFR-NPDDVFREFFGG 502
+YD+Y S S F +TF +P F FFGG
Sbjct: 62 GLYDQY--GEEGLKTGGGSSGGSSGSFHYTFHGDPHATFASFFGG 104
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,918,225
Number of extensions: 979062
Number of successful extensions: 3921
Number of sequences better than 1.0e-05: 83
Number of HSP's gapped: 3817
Number of HSP's successfully gapped: 89
Length of query: 438
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 332
Effective length of database: 15,340,888
Effective search space: 5093174816
Effective search space used: 5093174816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002252
(1316 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005485.1| dnaJ homolog subfamily B member 6 isoform b [Ho... 280 2e-75
Alignment gi|NP_490647.1| dnaJ homolog subfamily B member 6 isoform a [Ho... 261 8e-70
Alignment gi|NP_660157.1| dnaJ homolog subfamily B member 7 [Homo sapiens]. 174 2e-43
Alignment gi|NP_001001394.1| dnaJ homolog subfamily B member 3 [Homo sapi... 160 2e-39
Alignment gi|NP_699161.1| dnaJ homolog subfamily B member 8 [Homo sapiens]. 151 1e-36
Alignment gi|NP_001034639.1| dnaJ homolog subfamily B member 2 isoform a ... 128 1e-29
Alignment gi|NP_006727.2| dnaJ homolog subfamily B member 2 isoform b [Ho... 128 1e-29
Alignment gi|NP_008965.2| dnaJ homolog subfamily B member 4 [Homo sapiens]. 97 3e-20
Alignment gi|NP_001530.1| dnaJ homolog subfamily A member 1 [Homo sapiens]. 96 1e-19
Alignment gi|NP_001128477.1| dnaJ homolog subfamily B member 5 isoform 1 ... 96 1e-19
>ref|NP_005485.1| dnaJ homolog subfamily B member 6 isoform b [Homo sapiens].
Length = 241
Score = 280 bits (717), Expect = 2e-75
Identities = 153/241 (63%), Positives = 154/241 (63%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGVQRHAS EDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK
Sbjct: 1 MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGGRXXXXXXXXXXXXX 544
KRDIYDKY SHFDSPFEFGFTFRNPDDVFREFFGGR
Sbjct: 61 KRDIYDKYGKEGLNGGGGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFE 120
Query: 545 XXXGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGHXXXXXXXXXXX 724
GN LGH
Sbjct: 121 DFFGNRRGPRGSRSRGTGSFFSAFSGFPSFGSGFSSFDTGFTSFGSLGHGGLTSFSSTSF 180
Query: 725 XXXXXXNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDN 904
N+KSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDN
Sbjct: 181 GGSGMGNFKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDN 240
Query: 905 K 907
K
Sbjct: 241 K 241
>ref|NP_490647.1| dnaJ homolog subfamily B member 6 isoform a [Homo sapiens].
Length = 326
Score = 261 bits (668), Expect = 8e-70
Identities = 143/231 (61%), Positives = 144/231 (62%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGVQRHAS EDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK
Sbjct: 1 MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGGRXXXXXXXXXXXXX 544
KRDIYDKY SHFDSPFEFGFTFRNPDDVFREFFGGR
Sbjct: 61 KRDIYDKYGKEGLNGGGGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFE 120
Query: 545 XXXGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGHXXXXXXXXXXX 724
GN LGH
Sbjct: 121 DFFGNRRGPRGSRSRGTGSFFSAFSGFPSFGSGFSSFDTGFTSFGSLGHGGLTSFSSTSF 180
Query: 725 XXXXXXNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTING 877
N+KSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTING
Sbjct: 181 GGSGMGNFKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTING 231
>ref|NP_660157.1| dnaJ homolog subfamily B member 7 [Homo sapiens].
Length = 309
Score = 174 bits (441), Expect = 2e-43
Identities = 103/230 (44%), Positives = 121/230 (52%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLG+QR+AS EDIKKAY K+ALKWHPDKNPENKEEAERKFK+VAEAYEVLS+ +
Sbjct: 1 MVDYYEVLGLQRYASPEDIKKAYHKVALKWHPDKNPENKEEAERKFKEVAEAYEVLSNDE 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGGRXXXXXXXXXXXXX 544
KRDIYDKY SHFD E+GFTF PDDVF+E F R
Sbjct: 61 KRDIYDKY---GTEGLNGGGSHFDDECEYGFTFHKPDDVFKEIFHERDPFSFHFFEDSLE 117
Query: 545 XXXGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGHXXXXXXXXXXX 724
N LGH
Sbjct: 118 DLL-NRPGSSYGNRNRDAGYFFSTASEYPIFEKFSSYDTGYTSQGSLGHEGLTSFSSLAF 176
Query: 725 XXXXXXNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTIN 874
NY S++TS K+VNGR I TK+I+E+ QER E E++G+L +N
Sbjct: 177 DNSGMDNYISVTTSDKIVNGRNINTKKIIESDQER-EAEDNGELTFFLVN 225
>ref|NP_001001394.1| dnaJ homolog subfamily B member 3 [Homo sapiens].
Length = 145
Score = 160 bits (405), Expect = 2e-39
Identities = 78/107 (72%), Positives = 86/107 (80%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVL V R AS+E IKKAYRKLALKWHPDKNPENKEEAER+FKQVAEAYEVLSDAK
Sbjct: 1 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGGR 505
KRDIYD+Y F+ PFE+ F+FR+P DVFREFFGG+
Sbjct: 61 KRDIYDRYGEAGAEGGCTGGRPFEDPFEYVFSFRDPADVFREFFGGQ 107
>ref|NP_699161.1| dnaJ homolog subfamily B member 8 [Homo sapiens].
Length = 232
Score = 151 bits (381), Expect = 1e-36
Identities = 70/106 (66%), Positives = 84/106 (79%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
M +YYEVLGVQ AS EDIKKAYRKLAL+WHPDKNP+NKEEAE+KFK V+EAYEVLSD+K
Sbjct: 1 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
KR +YD+ + + SPF+ G+TFRNP+D+FREFFGG
Sbjct: 61 KRSLYDRAGCDSWRAGGGASTPYHSPFDTGYTFRNPEDIFREFFGG 106
Score = 87.4 bits (215), Expect = 3e-17
Identities = 40/54 (74%), Positives = 50/54 (92%)
Frame = +2
Query: 746 YKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDNK 907
+KS+ +ST+M+NG K+TTKRIVENGQERVEVEEDGQLKS+T+NGKEQL +D+K
Sbjct: 179 FKSVMSSTEMINGHKVTTKRIVENGQERVEVEEDGQLKSVTVNGKEQLKWMDSK 232
>ref|NP_001034639.1| dnaJ homolog subfamily B member 2 isoform a [Homo sapiens].
Length = 277
Score = 128 bits (322), Expect = 1e-29
Identities = 64/108 (59%), Positives = 78/108 (72%), Gaps = 3/108 (2%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
M YYE+L V R ASA+DIKKAYR+ AL+WHPDKNP+NKE AE+KFK+VAEAYEVLSD
Sbjct: 1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPF---EFGFTFRNPDDVFREFFG 499
KR+IYD+Y S ++ F FTFR+P++VFREFFG
Sbjct: 61 KREIYDRYGREGLTGTGTGPSRAEAGSGGPGFTFTFRSPEEVFREFFG 108
Score = 73.6 bits (179), Expect = 4e-13
Identities = 34/44 (77%), Positives = 41/44 (93%)
Frame = +2
Query: 746 YKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTING 877
++S+STST V GR+ITT+RI+ENGQERVEVEEDGQLKS+TING
Sbjct: 164 FRSVSTSTTFVQGRRITTRRIMENGQERVEVEEDGQLKSVTING 207
>ref|NP_006727.2| dnaJ homolog subfamily B member 2 isoform b [Homo sapiens].
Length = 324
Score = 128 bits (322), Expect = 1e-29
Identities = 64/108 (59%), Positives = 78/108 (72%), Gaps = 3/108 (2%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
M YYE+L V R ASA+DIKKAYR+ AL+WHPDKNP+NKE AE+KFK+VAEAYEVLSD
Sbjct: 1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPF---EFGFTFRNPDDVFREFFG 499
KR+IYD+Y S ++ F FTFR+P++VFREFFG
Sbjct: 61 KREIYDRYGREGLTGTGTGPSRAEAGSGGPGFTFTFRSPEEVFREFFG 108
Score = 73.6 bits (179), Expect = 4e-13
Identities = 34/44 (77%), Positives = 41/44 (93%)
Frame = +2
Query: 746 YKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTING 877
++S+STST V GR+ITT+RI+ENGQERVEVEEDGQLKS+TING
Sbjct: 164 FRSVSTSTTFVQGRRITTRRIMENGQERVEVEEDGQLKSVTING 207
>ref|NP_008965.2| dnaJ homolog subfamily B member 4 [Homo sapiens].
Length = 337
Score = 97.4 bits (241), Expect = 3e-20
Identities = 53/104 (50%), Positives = 65/104 (62%)
Frame = +2
Query: 191 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 370
DYY +LG+++ AS EDIKKAYRK ALK+HPDKN +AE KFK+VAEAYEVLSD KKR
Sbjct: 4 DYYCILGIEKGASDEDIKKAYRKQALKFHPDKN--KSPQAEEKFKEVAEAYEVLSDPKKR 61
Query: 371 DIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
+IYD++ F + F +P F FFGG
Sbjct: 62 EIYDQFGEEGLKGGAGGTDGQGGTFRYTF-HGDPHATFAAFFGG 104
>ref|NP_001530.1| dnaJ homolog subfamily A member 1 [Homo sapiens].
Length = 397
Score = 95.5 bits (236), Expect = 1e-19
Identities = 52/103 (50%), Positives = 66/103 (64%)
Frame = +2
Query: 194 YYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRD 373
YY+VLGV+ +A+ E++KKAYRKLALK+HPDKNP E KFKQ+++AYEVLSDAKKR+
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE----KFKQISQAYEVLSDAKKRE 62
Query: 374 IYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
+YDK G F +P D+F FFGG
Sbjct: 63 LYDKGGEQAIKEGGA-----------GGGFGSPMDIFDMFFGG 94
>ref|NP_001128477.1| dnaJ homolog subfamily B member 5 isoform 1 [Homo sapiens].
Length = 420
Score = 95.5 bits (236), Expect = 1e-19
Identities = 49/104 (47%), Positives = 64/104 (61%)
Frame = +2
Query: 191 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 370
DYY++LG+ A+ ++IKKAYRK+ALK+HPDKN E AE KFK++AEAY+VLSD KKR
Sbjct: 76 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKE--PNAEEKFKEIAEAYDVLSDPKKR 133
Query: 371 DIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
+YD+Y F + F +P F FFGG
Sbjct: 134 GLYDQYGEEGLKTGGGTSGGSSGSFHYTF-HGDPHATFASFFGG 176
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,108,040
Number of extensions: 958339
Number of successful extensions: 3588
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 3523
Number of HSP's successfully gapped: 54
Length of query: 438
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 332
Effective length of database: 14,802,980
Effective search space: 4914589360
Effective search space used: 4914589360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002252
(1316 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035977.2| dnaJ homolog subfamily B member 6 isoform c [Mu... 267 1e-71
Alignment gi|NP_001120839.1| dnaJ homolog subfamily B member 6 isoform d ... 263 2e-70
Alignment gi|NP_001033029.1| dnaJ homolog subfamily B member 6 isoform a ... 250 2e-66
Alignment gi|NP_001033030.2| dnaJ homolog subfamily B member 6 isoform b ... 186 4e-47
Alignment gi|NP_067292.2| dnaJ homolog subfamily B member 7 [Mus musculus]. 167 1e-41
Alignment gi|NP_064348.1| dnaJ homolog subfamily B member 8 [Mus musculus]. 148 1e-35
Alignment gi|NP_032325.2| dnaJ homolog subfamily B member 3 [Mus musculus]. 142 8e-34
Alignment gi|NP_001153357.1| dnaJ homolog subfamily B member 2 isoform 2 ... 127 1e-29
Alignment gi|NP_001153356.1| dnaJ homolog subfamily B member 2 isoform 2 ... 127 1e-29
Alignment gi|NP_001153355.1| dnaJ homolog subfamily B member 2 isoform 3 ... 127 1e-29
>ref|NP_035977.2| dnaJ homolog subfamily B member 6 isoform c [Mus musculus].
Length = 242
Score = 267 bits (683), Expect = 1e-71
Identities = 148/242 (61%), Positives = 151/242 (62%), Gaps = 1/242 (0%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGVQRHAS EDIKKAYRK ALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK
Sbjct: 1 MVDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXS-HFDSPFEFGFTFRNPDDVFREFFGGRXXXXXXXXXXXX 541
KRDIYDKY HFDSPFEFGFTFRNPDDVFREFFGGR
Sbjct: 61 KRDIYDKYGKEGLNGGGGGGGIHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPF 120
Query: 542 XXXXGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGHXXXXXXXXXX 721
GN LGH
Sbjct: 121 DDFFGNRRGPRGNRSRGAGSFFSTFSGFPSFGSGFPAFDTGFTPFGSLGHGGLTSFSSTS 180
Query: 722 XXXXXXXNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLD 901
N+KSISTSTK+VNG+KITTKRIVENGQERVEVEEDGQLKSLTINGKE LLRLD
Sbjct: 181 FGGSGMGNFKSISTSTKIVNGKKITTKRIVENGQERVEVEEDGQLKSLTINGKEHLLRLD 240
Query: 902 NK 907
NK
Sbjct: 241 NK 242
>ref|NP_001120839.1| dnaJ homolog subfamily B member 6 isoform d [Mus musculus].
Length = 241
Score = 263 bits (672), Expect = 2e-70
Identities = 148/242 (61%), Positives = 151/242 (62%), Gaps = 1/242 (0%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGVQRHAS EDIKKAYRK ALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK
Sbjct: 1 MVDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXS-HFDSPFEFGFTFRNPDDVFREFFGGRXXXXXXXXXXXX 541
KRDIYDKY HFDSPFEFGFTFRNPDDVFREFFGGR
Sbjct: 61 KRDIYDKYGKEGLNGGGGGGGIHFDSPFEFGFTFRNPDDVFREFFGGR-DPFSFDFFDPF 119
Query: 542 XXXXGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGHXXXXXXXXXX 721
GN LGH
Sbjct: 120 DDFFGNRRGPRGNRSRGAGSFFSTFSGFPSFGSGFPAFDTGFTPFGSLGHGGLTSFSSTS 179
Query: 722 XXXXXXXNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLD 901
N+KSISTSTK+VNG+KITTKRIVENGQERVEVEEDGQLKSLTINGKE LLRLD
Sbjct: 180 FGGSGMGNFKSISTSTKIVNGKKITTKRIVENGQERVEVEEDGQLKSLTINGKEHLLRLD 239
Query: 902 NK 907
NK
Sbjct: 240 NK 241
>ref|NP_001033029.1| dnaJ homolog subfamily B member 6 isoform a [Mus musculus].
Length = 365
Score = 250 bits (639), Expect = 2e-66
Identities = 139/232 (59%), Positives = 142/232 (61%), Gaps = 1/232 (0%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGVQRHAS EDIKKAYRK ALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK
Sbjct: 1 MVDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXS-HFDSPFEFGFTFRNPDDVFREFFGGRXXXXXXXXXXXX 541
KRDIYDKY HFDSPFEFGFTFRNPDDVFREFFGGR
Sbjct: 61 KRDIYDKYGKEGLNGGGGGGGIHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPF 120
Query: 542 XXXXGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGHXXXXXXXXXX 721
GN LGH
Sbjct: 121 DDFFGNRRGPRGNRSRGAGSFFSTFSGFPSFGSGFPAFDTGFTPFGSLGHGGLTSFSSTS 180
Query: 722 XXXXXXXNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTING 877
N+KSISTSTK+VNG+KITTKRIVENGQERVEVEEDGQLKSLTING
Sbjct: 181 FGGSGMGNFKSISTSTKIVNGKKITTKRIVENGQERVEVEEDGQLKSLTING 232
>ref|NP_001033030.2| dnaJ homolog subfamily B member 6 isoform b [Mus musculus].
Length = 261
Score = 186 bits (472), Expect = 4e-47
Identities = 92/108 (85%), Positives = 92/108 (85%), Gaps = 1/108 (0%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGVQRHAS EDIKKAYRK ALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK
Sbjct: 1 MVDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXS-HFDSPFEFGFTFRNPDDVFREFFGGR 505
KRDIYDKY HFDSPFEFGFTFRNPDDVFREFFGGR
Sbjct: 61 KRDIYDKYGKEGLNGGGGGGGIHFDSPFEFGFTFRNPDDVFREFFGGR 108
>ref|NP_067292.2| dnaJ homolog subfamily B member 7 [Mus musculus].
Length = 312
Score = 167 bits (424), Expect = 1e-41
Identities = 102/230 (44%), Positives = 117/230 (50%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGVQR+AS EDIK+AYRK+ALKWHPDKNPENKEEAERKFK+VAEAYEVLS+ +
Sbjct: 1 MVDYYEVLGVQRYASPEDIKRAYRKVALKWHPDKNPENKEEAERKFKEVAEAYEVLSNVE 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGGRXXXXXXXXXXXXX 544
KRDIYDKY SH D E+ FTFR DDVF+E FG R
Sbjct: 61 KRDIYDKY--GKEGLDGRGASHLDDEREYRFTFRKADDVFKEIFGERDPFSFHLFEDSLE 118
Query: 545 XXXGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGHXXXXXXXXXXX 724
N LGH
Sbjct: 119 GLL-NSSRSPSGSRGRGAGSHVSRAYDHPALSGLSSYDTGYSSYVSLGHEGLTSFSSLAL 177
Query: 725 XXXXXXNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTIN 874
NY I+ S K++NGR I TK+ EN QER E E+D +L S +N
Sbjct: 178 DDSGMGNYIPITPSGKVINGRNINTKKAFENRQER-EAEDDSELISFLVN 226
>ref|NP_064348.1| dnaJ homolog subfamily B member 8 [Mus musculus].
Length = 227
Score = 148 bits (373), Expect = 1e-35
Identities = 70/106 (66%), Positives = 81/106 (76%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
M +YYEVLGVQ AS EDIKKAYRKLAL+WHPDKNP+NKEEAE+KFKQV+EAYEVLSD+K
Sbjct: 1 MANYYEVLGVQSSASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSDSK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
KR +YD+ SPF G+ FRNP+D+FREFFGG
Sbjct: 61 KRSVYDRAGCDRWRAGGGANVPHSSPFGAGYPFRNPEDIFREFFGG 106
Score = 88.6 bits (218), Expect = 1e-17
Identities = 39/52 (75%), Positives = 51/52 (98%)
Frame = +2
Query: 746 YKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLD 901
+KS+ +ST+MVNGRK+TTKRI+ENGQERVEVEEDGQL+S+T+NGKE+L+R+D
Sbjct: 175 FKSVMSSTEMVNGRKVTTKRIIENGQERVEVEEDGQLRSVTVNGKEKLMRVD 226
>ref|NP_032325.2| dnaJ homolog subfamily B member 3 [Mus musculus].
Length = 242
Score = 142 bits (357), Expect = 8e-34
Identities = 70/107 (65%), Positives = 83/107 (77%), Gaps = 1/107 (0%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGV R ASAE I+KAYRKLALKWHPDKNPE+KEEAER+FKQVA+AYEVLSD +
Sbjct: 1 MVDYYEVLGVPRQASAEAIRKAYRKLALKWHPDKNPEHKEEAERRFKQVAQAYEVLSDVR 60
Query: 365 KRDIYDKY-XXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
KR++YD+ S F F++ F+FR+P +VFREFFGG
Sbjct: 61 KREVYDRCGEVGEVGGGGAAGSPFHDAFQYVFSFRDPAEVFREFFGG 107
Score = 94.0 bits (232), Expect = 2e-19
Identities = 44/55 (80%), Positives = 53/55 (96%)
Frame = +2
Query: 743 NYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDNK 907
NYKS+STST+++NG+KITTKRIVENGQERVEVEEDG+LKSL INGKEQLLR++ +
Sbjct: 188 NYKSVSTSTEIINGKKITTKRIVENGQERVEVEEDGELKSLIINGKEQLLRINTQ 242
>ref|NP_001153357.1| dnaJ homolog subfamily B member 2 isoform 2 [Mus musculus].
Length = 277
Score = 127 bits (320), Expect = 1e-29
Identities = 64/108 (59%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
M YYE+L V R AS +DIKKAYRK AL+WHPDKNP+NKE AE+KFK+VAEAYEVLSD
Sbjct: 1 MASYYEILDVPRSASPDDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFE---FGFTFRNPDDVFREFFG 499
KR+IYD+Y S ++ F FTFR+P++VFREFFG
Sbjct: 61 KREIYDRYGREGLTGAGSGPSRSETGGAGPGFTFTFRSPEEVFREFFG 108
Score = 72.0 bits (175), Expect = 1e-12
Identities = 33/44 (75%), Positives = 41/44 (93%)
Frame = +2
Query: 746 YKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTING 877
++S+STST V GR+ITT+RI+ENGQERVEVEEDGQLKS++ING
Sbjct: 164 FRSVSTSTTFVQGRRITTRRIMENGQERVEVEEDGQLKSVSING 207
>ref|NP_001153356.1| dnaJ homolog subfamily B member 2 isoform 2 [Mus musculus].
Length = 277
Score = 127 bits (320), Expect = 1e-29
Identities = 64/108 (59%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
M YYE+L V R AS +DIKKAYRK AL+WHPDKNP+NKE AE+KFK+VAEAYEVLSD
Sbjct: 1 MASYYEILDVPRSASPDDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFE---FGFTFRNPDDVFREFFG 499
KR+IYD+Y S ++ F FTFR+P++VFREFFG
Sbjct: 61 KREIYDRYGREGLTGAGSGPSRSETGGAGPGFTFTFRSPEEVFREFFG 108
Score = 72.0 bits (175), Expect = 1e-12
Identities = 33/44 (75%), Positives = 41/44 (93%)
Frame = +2
Query: 746 YKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTING 877
++S+STST V GR+ITT+RI+ENGQERVEVEEDGQLKS++ING
Sbjct: 164 FRSVSTSTTFVQGRRITTRRIMENGQERVEVEEDGQLKSVSING 207
>ref|NP_001153355.1| dnaJ homolog subfamily B member 2 isoform 3 [Mus musculus].
Length = 324
Score = 127 bits (320), Expect = 1e-29
Identities = 64/108 (59%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
M YYE+L V R AS +DIKKAYRK AL+WHPDKNP+NKE AE+KFK+VAEAYEVLSD
Sbjct: 1 MASYYEILDVPRSASPDDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFE---FGFTFRNPDDVFREFFG 499
KR+IYD+Y S ++ F FTFR+P++VFREFFG
Sbjct: 61 KREIYDRYGREGLTGAGSGPSRSETGGAGPGFTFTFRSPEEVFREFFG 108
Score = 72.0 bits (175), Expect = 1e-12
Identities = 33/44 (75%), Positives = 41/44 (93%)
Frame = +2
Query: 746 YKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTING 877
++S+STST V GR+ITT+RI+ENGQERVEVEEDGQLKS++ING
Sbjct: 164 FRSVSTSTTFVQGRRITTRRIMENGQERVEVEEDGQLKSVSING 207
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,252,382
Number of extensions: 819475
Number of successful extensions: 2892
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 2833
Number of HSP's successfully gapped: 66
Length of query: 438
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 334
Effective length of database: 12,493,815
Effective search space: 4172934210
Effective search space used: 4172934210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002252
(1316 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132456.1| PREDICTED: dnaJ homolog subfamily B member 8... 148 6e-36
Alignment gi|XP_003134565.2| PREDICTED: dnaJ homolog subfamily B member 6... 142 5e-34
Alignment gi|XP_003133716.2| PREDICTED: dnaJ homolog subfamily B member 2... 128 8e-30
Alignment gi|XP_003127964.1| PREDICTED: dnaJ homolog subfamily B member 4... 96 3e-20
Alignment gi|XP_003130730.1| PREDICTED: dnaJ homolog subfamily A member 1... 96 6e-20
Alignment gi|XP_003123416.1| PREDICTED: dnaJ homolog subfamily B member 1... 96 6e-20
Alignment gi|NP_999504.1| dnaJ homolog subfamily A member 4 [Sus scrofa]. 95 1e-19
Alignment gi|XP_003360111.1| PREDICTED: dnaJ homolog subfamily B member 6... 91 2e-18
Alignment gi|XP_003122027.2| PREDICTED: dnaJ homolog subfamily A member 3... 90 3e-18
Alignment gi|XP_001924354.1| PREDICTED: dnaJ homolog subfamily B member 1... 89 7e-18
>ref|XP_003132456.1| PREDICTED: dnaJ homolog subfamily B member 8-like [Sus scrofa].
Length = 231
Score = 148 bits (374), Expect = 6e-36
Identities = 70/106 (66%), Positives = 84/106 (79%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
M +YYEVLGVQ AS EDIKKAYRKLAL+WHPDKNP+NKEEAE+KFKQV+EAYEVLSD+K
Sbjct: 1 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSDSK 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
KR +YD+ + + SPF+ G+ FRNP+D+FREFFGG
Sbjct: 61 KRSVYDR-AGCDSWRAGGASTPYSSPFDSGYIFRNPEDIFREFFGG 105
Score = 90.9 bits (224), Expect = 1e-18
Identities = 43/54 (79%), Positives = 51/54 (94%)
Frame = +2
Query: 746 YKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTINGKEQLLRLDNK 907
+KS+ +ST+MVNG K+TTKRIVENGQERVEVEEDGQLKS+TINGKEQL R+D+K
Sbjct: 178 FKSVMSSTEMVNGHKVTTKRIVENGQERVEVEEDGQLKSVTINGKEQLKRVDSK 231
>ref|XP_003134565.2| PREDICTED: dnaJ homolog subfamily B member 6-like [Sus scrofa].
Length = 104
Score = 142 bits (357), Expect = 5e-34
Identities = 68/68 (100%), Positives = 68/68 (100%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK
Sbjct: 1 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 365 KRDIYDKY 388
KRDIYDKY
Sbjct: 61 KRDIYDKY 68
>ref|XP_003133716.2| PREDICTED: dnaJ homolog subfamily B member 2-like [Sus scrofa].
Length = 278
Score = 128 bits (321), Expect = 8e-30
Identities = 64/108 (59%), Positives = 78/108 (72%), Gaps = 3/108 (2%)
Frame = +2
Query: 185 MVDYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAK 364
M YYE+L V R A+A+DIKKAYRK AL+WHPDKNP+NKE AE+KFK+VAEAYEVLSD
Sbjct: 1 MASYYEILDVPRSATADDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 365 KRDIYDKYXXXXXXXXXXXXSHFDSPF---EFGFTFRNPDDVFREFFG 499
KR+IYD+Y S ++ F FTFR+P++VFREFFG
Sbjct: 61 KREIYDRYGREGLTGAGTGPSRAEAGGGGPGFTFTFRSPEEVFREFFG 108
Score = 73.9 bits (180), Expect = 2e-13
Identities = 34/44 (77%), Positives = 41/44 (93%)
Frame = +2
Query: 746 YKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKSLTING 877
++S+STST V GR+ITT+RI+ENGQERVEVEEDGQLKS+TING
Sbjct: 164 FRSVSTSTTFVQGRRITTRRIMENGQERVEVEEDGQLKSITING 207
>ref|XP_003127964.1| PREDICTED: dnaJ homolog subfamily B member 4-like [Sus scrofa].
Length = 337
Score = 96.3 bits (238), Expect = 3e-20
Identities = 52/104 (50%), Positives = 65/104 (62%)
Frame = +2
Query: 191 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 370
DYY +LG+++ AS EDIKKAYRK AL++HPDKN +AE KFK+VAEAYEVLSD KKR
Sbjct: 4 DYYCILGIEKGASDEDIKKAYRKQALRFHPDKN--KSPQAEEKFKEVAEAYEVLSDPKKR 61
Query: 371 DIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
+IYD++ F + F +P F FFGG
Sbjct: 62 EIYDQFGEEGLKGGAGGTDGQGGTFRYTF-HGDPHATFAAFFGG 104
>ref|XP_003130730.1| PREDICTED: dnaJ homolog subfamily A member 1 [Sus scrofa].
Length = 397
Score = 95.5 bits (236), Expect = 6e-20
Identities = 52/103 (50%), Positives = 66/103 (64%)
Frame = +2
Query: 194 YYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRD 373
YY+VLGV+ +A+ E++KKAYRKLALK+HPDKNP E KFKQ+++AYEVLSDAKKR+
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE----KFKQISQAYEVLSDAKKRE 62
Query: 374 IYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
+YDK G F +P D+F FFGG
Sbjct: 63 LYDKGGEQAIKEGGA-----------GGGFGSPMDIFDMFFGG 94
>ref|XP_003123416.1| PREDICTED: dnaJ homolog subfamily B member 1 isoform 1 [Sus
scrofa].
Length = 339
Score = 95.5 bits (236), Expect = 6e-20
Identities = 52/107 (48%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Frame = +2
Query: 191 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 370
DYY+ LG+ R AS E+IK+AYR+ AL++HPDKN E AE KFK++AEAY+VLSD +KR
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE--PGAEEKFKEIAEAYDVLSDPRKR 61
Query: 371 DIYDKY-XXXXXXXXXXXXSHFDSPFEFGFTFR-NPDDVFREFFGGR 505
+I+D+Y S + F +TF +P +F EFFGGR
Sbjct: 62 EIFDRYGEEGLKGGGPSGGSSGANGTSFSYTFHGDPHAMFAEFFGGR 108
>ref|NP_999504.1| dnaJ homolog subfamily A member 4 [Sus scrofa].
Length = 397
Score = 94.7 bits (234), Expect = 1e-19
Identities = 52/103 (50%), Positives = 63/103 (61%)
Frame = +2
Query: 194 YYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRD 373
YY++LGV+ AS E+IKKAYRKLALK+HPDKNP+ E KFK +++AYEVLSD KKRD
Sbjct: 7 YYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGE----KFKLISQAYEVLSDPKKRD 62
Query: 374 IYDKYXXXXXXXXXXXXSHFDSPFEFGFTFRNPDDVFREFFGG 502
IYD+ F SP D+F FFGG
Sbjct: 63 IYDQGGEQAIKEGGSGSPSFSSPM----------DIFDMFFGG 95
>ref|XP_003360111.1| PREDICTED: dnaJ homolog subfamily B member 6-like [Sus scrofa].
Length = 313
Score = 90.5 bits (223), Expect = 2e-18
Identities = 48/65 (73%), Positives = 48/65 (73%)
Frame = +2
Query: 683 LGHXXXXXXXXXXXXXXXXXNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKS 862
LGH NYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKS
Sbjct: 155 LGHGGLTSFSSTAFGGSGMGNYKSISTSTKMVNGRKITTKRIVENGQERVEVEEDGQLKS 214
Query: 863 LTING 877
LTING
Sbjct: 215 LTING 219
>ref|XP_003122027.2| PREDICTED: dnaJ homolog subfamily A member 3, mitochondrial-like
[Sus scrofa].
Length = 330
Score = 89.7 bits (221), Expect = 3e-18
Identities = 41/66 (62%), Positives = 54/66 (81%)
Frame = +2
Query: 191 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 370
DYY++LG+ A+ ++IKKAYRK+ALK+HPDKN E AE KFK++AEAY+VLSD KKR
Sbjct: 118 DYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKE--PNAEEKFKEIAEAYDVLSDPKKR 175
Query: 371 DIYDKY 388
+YD+Y
Sbjct: 176 GLYDQY 181
>ref|XP_001924354.1| PREDICTED: dnaJ homolog subfamily B member 12 [Sus scrofa].
Length = 376
Score = 88.6 bits (218), Expect = 7e-18
Identities = 51/105 (48%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Frame = +2
Query: 191 DYYEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 370
DYYE+LGV R AS ED+KKAYRKLALK+HPDKN + A FK + AY VLS+ +KR
Sbjct: 111 DYYEILGVSRGASDEDLKKAYRKLALKFHPDKN--HAPGATEAFKAIGTAYAVLSNPEKR 168
Query: 371 DIYDKYXXXXXXXXXXXXSHFDSPFEFGFTFR-NPDDVFREFFGG 502
YD++ H D F GF +P+D+F FFGG
Sbjct: 169 KQYDQFGDDKSQAARQGHGHGD--FHRGFEADISPEDLFNMFFGG 211
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,682,549
Number of extensions: 688138
Number of successful extensions: 2251
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 2210
Number of HSP's successfully gapped: 41
Length of query: 438
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 336
Effective length of database: 8,804,438
Effective search space: 2958291168
Effective search space used: 2958291168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002252
(1316 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 823 0.0
Sscrofa_Chr02 480 e-132
Sscrofa_ChrX 168 5e-39
Sscrofa_Chr05 105 6e-20
Sscrofa_Chr01 68 1e-08
>Sscrofa_Chr18
|| Length = 61220071
Score = 823 bits (415), Expect = 0.0
Identities = 494/517 (95%), Gaps = 6/517 (1%)
Strand = Plus / Minus
Query: 803 aggattgtggagaatggacaggagagggtggaagttgaagaagacggccagttgaagtcc 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445531 aggattgtggagaatggacaggagagggtggaagttgaagaagacggccagttgaagtcc 1445472
Query: 863 ttgacgataaatggtaaggagcagctgctgcgcttggataacaagtagctcgacgcacgc 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445471 ttgacgataaatggtaaggagcagctgctgcgcttggataacaagtagctcgacgcacgc 1445412
Query: 923 gggtggcagcagtgttaactctagcacacgccgtttgcggattaacaggaacannnnnnn 982
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445411 gggtggcagcagtgttaactctagcacacgccgtttgcggattaacaggaacattttttt 1445352
Query: 983 gaagatttcagacgaactcgactttcagtataactgtacctaatctaaagtatttataca 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445351 gaagatttcagacgaactcgactttcagtataactgtacctaatctaaagtatttataca 1445292
Query: 1043 cagctcatcggagcctatttgtcatagacttttgagtttattgttgggaccacgtaatag 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445291 cagctcatcggagcctatttgtcatagacttttgagtttattgttgggaccacgtaatag 1445232
Query: 1103 gaccattttannnnnnngtctttaaacttgttgtaaatctctgtatgcactttgcttttt 1162
|||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445231 gaccattttatttttttgtctttaaacttgttgtaaatctctgtatgcactttgcttttt 1445172
Query: 1163 tattaaacgtaagccaaggtggccgtgactcttcctcccctataca-cagcacggacctg 1221
|||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||
Sbjct: 1445171 tattaaacgtaagccaaggtggccgtgactcttcctccacta-acaccagcacggacctg 1445113
Query: 1222 cttttccatttgtgtttg-aacgtgagccaagtagtgtcagcctgctgtgaagtt-acat 1279
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1445112 cttttcca-ttgtgtttgaaacgtgagccaagtagtgtcagcctgctgtgaagttaacat 1445054
Query: 1280 ttgcaggacgaatcttcact-aagtaatttcagtttt 1315
| ||||||||||||||||| ||||||||||||||||
Sbjct: 1445053 tgccaggacgaatcttcactaaagtaatttcagtttt 1445017
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 660 caggattcacttcctttggttccctaggtcacgggggcctcacttccttctcttccacgg 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1446148 caggattcacttcctttggttccctaggtcacgggggcctcacttccttctcttccacgg 1446089
Query: 720 cgtttggtggcagtgggatgggcaactacaaatcgatatccacttcgactaaaatggtca 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1446088 cgtttggtggcagtgggatgggcaactacaaatcgatatccacttcgactaaaatggtca 1446029
Query: 780 acggcaggaaaatcaccacgaagagg 805
||||||||||||||||||||||||||
Sbjct: 1446028 acggcaggaaaatcaccacgaagagg 1446003
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 530 gaagacccatttgaggacttctttgggaatcgaaggaccccccgtggaagccggagccgg 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1448108 gaagacccatttgaggacttctttgggaatcgaaggaccccccgtggaagccggagccgg 1448049
Query: 590 ggcacgggatcctttttctctgctttcagcggatttcccccctttggagggggcttttcc 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1448048 ggcacgggatcctttttctctgctttcagcggatttcccccctttggagggggcttttcc 1447989
Query: 650 tcttttgatacagg 663
||||||||||||||
Sbjct: 1447988 tcttttgatacagg 1447975
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 418 aggtggaagtcatttcgacagtccgtttgagttcggcttcacattccgaaatccagatga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1457280 aggtggaagtcatttcgacagtccgtttgagttcggcttcacattccgaaatccagatga 1457221
Query: 478 cgtcttcagggaattttttggtggaagggatccattttctttcgacctcttcg 530
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1457220 cgtcttcagggaattttttggtggaagggatccattttctttcgacctcttcg 1457168
Score = 218 bits (110), Expect = 6e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 250 gtatcggaaactggcactgaagtggcatccagataaaaatccggagaataaagaagaagc 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1460242 gtatcggaaactggcactgaagtggcatccagataaaaatccggagaataaagaagaagc 1460183
Query: 310 agagagaaaattcaagcaggttgctgaggcgtatgaggtgttatcagacg 359
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1460182 agagagaaaattcaagcaggttgctgaggcgtatgaggtgttatcagacg 1460133
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 158 ggactggttccaacagcctgttaaaacatggtggattactatgaagttctaggcgtgcag 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1463301 ggactggttccaacagcctgttaaaacatggtggattactatgaagttctaggcgtgcag 1463242
Query: 218 agacatgcctcagccgaggatattaaaaaggcgta 252
|||||||||||||||||||||||||||||||||||
Sbjct: 1463241 agacatgcctcagccgaggatattaaaaaggcgta 1463207
Score = 125 bits (63), Expect = 7e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 359 gcgaaaaaacgggacatctatgacaaatacggcaaagaaggattgaacggtggcagtgga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1458354 gcgaaaaaacgggacatctatgacaaatacggcaaagaaggattgaacggtggcagtgga 1458295
Query: 419 ggt 421
|||
Sbjct: 1458294 ggt 1458292
>Sscrofa_Chr02
|| Length = 162569375
Score = 480 bits (242), Expect = e-132
Identities = 639/766 (83%), Gaps = 19/766 (2%)
Strand = Plus / Plus
Query: 152 gtcctcggactggttccaacagcctgttaaaacatggtggattactatgaagttctaggc 211
|||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 78542745 gtcctcagactcattccaacaggctgttaaaacatggtagattactatgaagttctagct 78542804
Query: 212 gtgcagagacatgcctcagccgaggatattaaaaaggcgtatcggaaactggcactgaag 271
||||||||||||||||||||| || ||||||||||| | |||| ||||||||||||||||
Sbjct: 78542805 gtgcagagacatgcctcagccaagtatattaaaaagacatatcagaaactggcactgaag 78542864
Query: 272 tggcatccagataaaaatc---cggagaataaagaagaagcagagagaaaattcaagcag 328
||||||||||||||||||| | |||| |||||| ||| |||||||||||||||||
Sbjct: 78542865 tggcatccagataaaaatcatcccaagaagaaagaataagtggagagaaaattcaagcaa 78542924
Query: 329 gttgctgaggcgtatgaggtgttatcagacgcgaaaaaacgggacatctatgacaaatac 388
||||||||||| ||||||||||||||||| || |||||| ||||| |||||||||||||
Sbjct: 78542925 gttgctgaggcatatgaggtgttatcagatgctaaaaaatgggacgtctatgacaaatat 78542984
Query: 389 ggcaaagaaggattgaacggtggcagtggaggtggaagtcatttcgacagtccgtttgag 448
||||||| |||| ||| ||| ||||||||||| ||||||||| ||||||| |||||||
Sbjct: 78542985 ggcaaag---gattaaactgtgacagtggaggtgaaagtcattttgacagtctgtttgag 78543041
Query: 449 ttcggcttcacattccgaaatccagatgacgtcttcagggaattttttggtggaagggat 508
|| ||||||||||||| ||| ||||||||| |||| ||| ||||||||||||||||| |
Sbjct: 78543042 tttggcttcacattccaaaacccagatgacatcttaaggaaattttttggtggaaggcac 78543101
Query: 509 ccattttctttcgacctcttcgaagacccatttgaggacttctttgggaatcgaaggacc 568
||||||||||| || ||| |||||||| |||| ||||||||||| ||| ||
Sbjct: 78543102 tcattttctttcaacttct------acccatttaaggatttctttgggaa---gaggtcc 78543152
Query: 569 ccccgtggaagccggagccggggcacgggatcctttttctctgctttcagcggatttccc 628
| | ||||| || | ||||| || | ||||| |||| |||||| |||||| ||
Sbjct: 78543153 tcac--aaaagccagatgcaaggcacagggtggtttttttctgatttcagtggattt-cc 78543209
Query: 629 ccctttggagggggcttttcctcttttgatacaggattcacttcctttggttccctaggt 688
| ||||||||| | ||||| |||||||||||||||| ||||||||||||| ||||||
Sbjct: 78543210 ctttttggagggagattttctcattttgatacaggattcgcttcctttggttcactaggt 78543269
Query: 689 cacgggggcctcacttccttctcttccacggcgtttggtggcagtgggatgggcaactac 748
| | || |||||| ||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 78543270 cccaggcgcctcatttctttctcttccacaagatttggtggcagagggatgggcaactac 78543329
Query: 749 aaatcgatatccacttcgactaaaatggtcaacggcaggaaaatcaccacgaagaggatt 808
||| | ||| |||| ||||||||| | || ||||| |||||||| | ||||||| ||
Sbjct: 78543330 aaacctctattagcttctactaaaatgtttaatggcagaaaaatcactatgaagaggttt 78543389
Query: 809 gtggagaatggacaggagagggtggaagttgaagaagacggccagttgaagtccttgacg 868
|| ||||||| || | || ||||||||||||||||| ||||||| |||||||||||
Sbjct: 78543390 gtcaagaatggtcaaaaaagaatggaagttgaagaagacagccagttaaagtccttgaca 78543449
Query: 869 ataaatgg-taaggagcagctgctgcgcttggataacaagtagctc 913
|||||||| |||| |||||||||||| |||||||||||||||||||
Sbjct: 78543450 ataaatggttaagaagcagctgctgcacttggataacaagtagctc 78543495
Score = 93.7 bits (47), Expect = 2e-16
Identities = 168/204 (82%), Gaps = 15/204 (7%)
Strand = Plus / Plus
Query: 983 gaagatttcagacgaactcgactttcagtataactgtacctaatctaaagtatttataca 1042
||||||||||||| |||| ||||||||||||||||| ||||| || ||||||| |
Sbjct: 78543547 gaagatttcagacaaactggactttcagtataactgcacctag-----agaatttatata 78543601
Query: 1043 cagctcatcggag-cctatttgtcatagacttttgagtttattgttgggaccac-gtaat 1100
|||||||| ||| |||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 78543602 cagctcattggacacctatttgtcatagacatttgagtttattgtt-ggaccacaaaaaa 78543660
Query: 1101 aggaccattttannnnnnngtctttaaacttgttgtaaatctctgtatgcactttgcttt 1160
||||||| ||| ||||||||| ||||||||||||||| || |||||||| |||
Sbjct: 78543661 aggaccacttt------ttgtctttaaaattgttgtaaatctctttaggcactttg-ttt 78543713
Query: 1161 tttattaaacgtaagccaaggtgg 1184
|||||||||| ||| ||| |||||
Sbjct: 78543714 tttattaaacataatccagggtgg 78543737
>Sscrofa_ChrX
|| Length = 144288218
Score = 168 bits (85), Expect = 5e-39
Identities = 292/357 (81%), Gaps = 8/357 (2%)
Strand = Plus / Minus
Query: 168 caacagcctgttaaaacatggtggattactatgaagttctaggcgtgcagagacatgcct 227
||||||||||| ||||||| || || || || |||||||| ||||||||||||||||| |
Sbjct: 107197636 caacagcctgtcaaaacatagtagactattacgaagttct-ggcgtgcagagacatgctt 107197578
Query: 228 cagccg----aggatattaaaaaggcgtatcggaaactggcactgaagtggcatccagat 283
|| || ||| |||||||||| | ||| ||||||| |||||||||||||||||||||
Sbjct: 107197577 caaccttttaaggttattaaaaagacatattggaaactagcactgaagtggcatccagat 107197518
Query: 284 aaaaatccggagaataaagaagaagcagagagaaaattcaagcaggttgctgaggcgtat 343
|||||| ||| |||||||| |||||||||| || |||||||| || | |||||| |||
Sbjct: 107197517 --aaatcctgagcataaagaataagcagagag-aagttcaagcaagtaggtgaggcttat 107197461
Query: 344 gaggtgttatcagacgcgaaaaaacgggacatctatgacaaatacggcaaagaaggattg 403
||| | ||| |||| || ||||||| ||| |||| ||||||||| ||||| ||||| |
Sbjct: 107197460 gagatattaccagatgctaaaaaacaggatatctgtgacaaatatggcaaggaagggtaa 107197401
Query: 404 aacggtggcagtggaggtggaagtcatttcgacagtccgtttgagttcggcttcacattc 463
| ||| |||||| |||||||||||| ||||||| || |||| ||||||||||||
Sbjct: 107197400 tatggtaaaggtggagatggaagtcattttaacagtccaattcagtttggcttcacattc 107197341
Query: 464 cgaaatccagatgacgtcttcagggaattttttggtggaagggatccattttctttc 520
| || |||| ||| || ||||||||||||||||||||| |||||| |||||||||
Sbjct: 107197340 cttaacccaggtgaagtgttcagggaattttttggtggatgggatctgttttctttc 107197284
Score = 69.9 bits (35), Expect = 3e-09
Identities = 45/47 (95%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 1231 ttgtgtttg-aacgtgagccaagtagtgtcagcctgctgtgaagtta 1276
||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 107196176 ttgtgtttgcaatgtgagccaagtagtgtcagcctgctgtgaagtta 107196130
>Sscrofa_Chr05
|| Length = 111506441
Score = 105 bits (53), Expect = 6e-20
Identities = 179/218 (82%), Gaps = 6/218 (2%)
Strand = Plus / Plus
Query: 188 gtggattactatgaagttctaggcgtgcagagacatgcctcagccgaggatatt-aaaaa 246
||||||||||||||||||||||| ||||||||||| || ||| | ||||| ||| |||||
Sbjct: 4755065 gtggattactatgaagttctaggagtgcagagacaagcttcacctgaggacattaaaaaa 4755124
Query: 247 ggcgtatcggaaactggcactgaagtggcatccagataaaaatccggagaataaagaaga 306
||| ||||| ||| ||||||| || |||| || ||||||||||| || |||| ||||
Sbjct: 4755125 ggcttatcgaaaagtggcactaaaacggcaccctgataaaaatccagaaaata---aaga 4755181
Query: 307 agcagagagaaaattcaagcaggttgctgaggcgtatgaggtgttatcagacgcgaaaaa 366
||| |||||||||||||| | || || ||| | |||||||| |||||| | | ||||
Sbjct: 4755182 agccgagagaaaattcaaagaagtagcagagacatatgaggtattatcaaatgatgaaaa 4755241
Query: 367 acgggacatctatgacaaatac--ggcaaagaaggatt 402
||||||||| ||||| ||| || ||||||||||||||
Sbjct: 4755242 acgggacatttatgaaaaaaacatggcaaagaaggatt 4755279
>Sscrofa_Chr01
|| Length = 315321322
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1137 aaatctctgtatgcactttgcttttttattaaac 1170
||||||||||||||||||||||||||||||||||
Sbjct: 121070182 aaatctctgtatgcactttgcttttttattaaac 121070215
Score = 60.0 bits (30), Expect = 3e-06
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1056 cctatttgtcatagacttttgagtttattgttgggaccacgtaataggac 1105
||||||||||||| ||||||| | ||||||||||||||| |||||||||
Sbjct: 121069857 cctatttgtcataagcttttgaatctattgttgggaccacataataggac 121069906
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,215,915
Number of extensions: 282
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 18
Length of query: 1316
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1295
Effective length of database: 2,808,413,156
Effective search space: 3636895037020
Effective search space used: 3636895037020
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)