Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002256
(1637 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070337.1| RING finger protein 10 [Bos taurus]. 869 0.0
>ref|NP_001070337.1| RING finger protein 10 [Bos taurus].
Length = 810
Score = 869 bits (2245), Expect = 0.0
Identities = 438/541 (80%), Positives = 446/541 (82%)
Frame = +3
Query: 3 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 182
WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY
Sbjct: 171 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 230
Query: 183 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD 362
PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD
Sbjct: 231 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD 290
Query: 363 TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVIXXXXX 542
TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVL RV+
Sbjct: 291 TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLRRVVQEEKA 350
Query: 543 XXXXXXXXXXHTPESCFIEAAIQELKTREEALSGLAESREAVTGVVAALEQLVLMAPLEK 722
HTPESCFIEAAIQELK REEALSGLAESR V GVVAALEQ VLMAPL K
Sbjct: 351 ALERQLAEEKHTPESCFIEAAIQELKAREEALSGLAESRGEVPGVVAALEQRVLMAPLAK 410
Query: 723 ESLFQPRKGVLEYLSAFDEETTEVCSLGAPSRPXXXXXXXXXXXXXXXXXXXXXXXCNDL 902
ES+FQPRKGVLEYLSAFDE+ TEVCSLG P P C DL
Sbjct: 411 ESVFQPRKGVLEYLSAFDEDATEVCSLG-PPHPVALPLVEEEETVSEPEPEGLSEACEDL 469
Query: 903 ELAEDSLGEGTICAESSQQEPVTKPSITHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE 1082
EL ED+LGEGTIC ESSQQEPV+KPS+THLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE
Sbjct: 470 ELVEDNLGEGTICTESSQQEPVSKPSVTHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE 529
Query: 1083 YGSLEQSPEKISATVVEIVGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPLVSKETL 1262
YGSLEQSPEKISATVVEI GYSMSED+RQRHRYLSHLPLTCEFSICELALQPPLVSKETL
Sbjct: 530 YGSLEQSPEKISATVVEISGYSMSEDMRQRHRYLSHLPLTCEFSICELALQPPLVSKETL 589
Query: 1263 EIFSDDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKYPEVHIPLENLQQFPAFNSYTC 1442
EIFSDDI QGKYPEVHIPLENLQQFPAFNSYTC
Sbjct: 590 EIFSDDIEKRKRQRQKKAREERRRERRIEMEENKKQGKYPEVHIPLENLQQFPAFNSYTC 649
Query: 1443 SSDSALGPTSTEGHGAXXXXXXXXXXXXQADFLLTPVSPTASQGSPSFCVGSLEEDSPFP 1622
SSDSALG TSTEG GA QADFLLTP+SPTASQGSPSFCVGSLEEDSPFP
Sbjct: 650 SSDSALGSTSTEGRGALSLSPLSRSPGSQADFLLTPLSPTASQGSPSFCVGSLEEDSPFP 709
Query: 1623 S 1625
S
Sbjct: 710 S 710
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,662,655
Number of extensions: 1636430
Number of successful extensions: 6521
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6458
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 438
Effective length of database: 14,140,958
Effective search space: 6193739604
Effective search space used: 6193739604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002256
(1637 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851332.1| PREDICTED: similar to ring finger protein 10 is... 848 0.0
Alignment gi|XP_863522.1| PREDICTED: similar to ring finger protein 10 is... 830 0.0
Alignment gi|XP_863488.1| PREDICTED: similar to ring finger protein 10 is... 805 0.0
Alignment gi|XP_534709.2| PREDICTED: similar to ring finger protein 10 is... 796 0.0
Alignment gi|XP_863504.1| PREDICTED: similar to ring finger protein 10 is... 565 e-161
Alignment gi|XP_863438.1| PREDICTED: similar to ring finger protein 10 is... 292 7e-79
Alignment gi|XP_852019.1| PREDICTED: similar to elongation factor Tu GTP ... 119 6e-27
Alignment gi|XP_863465.1| PREDICTED: similar to ring finger protein 10 is... 61 4e-09
>ref|XP_851332.1| PREDICTED: similar to ring finger protein 10 isoform 2 [Canis
familiaris].
Length = 834
Score = 848 bits (2192), Expect = 0.0
Identities = 433/569 (76%), Positives = 447/569 (78%), Gaps = 28/569 (4%)
Frame = +3
Query: 3 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQV--------------- 137
WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQV
Sbjct: 171 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVVSSPAKLERLTLTVP 230
Query: 138 -------------RICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSK 278
RICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSK
Sbjct: 231 CQLESVTCAVLFQRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSK 290
Query: 279 CPICYSSVHKKDLKSVVATESRQYVVGDTITMQLMKREKGVLVALPKSKWMNVDHPIHLG 458
CPICYSSVHKKDLKSVVATESRQYVVGDTITMQLMKREKGVL+ALPKSKWMNVDHPIHLG
Sbjct: 291 CPICYSSVHKKDLKSVVATESRQYVVGDTITMQLMKREKGVLLALPKSKWMNVDHPIHLG 350
Query: 459 DEQHSQYSKLLLASKEQVLHRVIXXXXXXXXXXXXXXXHTPESCFIEAAIQELKTREEAL 638
DEQHSQYSKLLLASKEQVLHRV+ HTPESCFIEAAIQELKTREEAL
Sbjct: 351 DEQHSQYSKLLLASKEQVLHRVVREERVALEQQLAEEKHTPESCFIEAAIQELKTREEAL 410
Query: 639 SGLAESREAVTGVVAALEQLVLMAPLEKESLFQPRKGVLEYLSAFDEETTEVCSLGAPSR 818
SGL SR GV+ ALEQLVLMAPL KES+ QPRKGVLEYLSAFDEETTEVCSLG+P R
Sbjct: 411 SGLPGSRGEAAGVMPALEQLVLMAPLAKESVLQPRKGVLEYLSAFDEETTEVCSLGSP-R 469
Query: 819 PXXXXXXXXXXXXXXXXXXXXXXXCNDLELAEDSLGEGTICAESSQQEPVTKPSITHLSS 998
P C+D ELA+DSLGEGTIC ESSQQEP++KP THLSS
Sbjct: 470 P----LALPLVEEEEAVSEPEPEACDDAELADDSLGEGTICTESSQQEPISKPGFTHLSS 525
Query: 999 SPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLEQSPEKISATVVEIVGYSMSEDVRQRHR 1178
SPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLEQSPEKISA VVEI GYSMSEDVRQRHR
Sbjct: 526 SPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLEQSPEKISAVVVEIAGYSMSEDVRQRHR 585
Query: 1179 YLSHLPLTCEFSICELALQPPLVSKETLEIFSDDIXXXXXXXXXXXXXXXXXXXXXXXXX 1358
YLSHLPLTCEFSICELALQPP+VSKETLEIFSDDI
Sbjct: 586 YLSHLPLTCEFSICELALQPPVVSKETLEIFSDDIEKRKRQRQKKAREERRRERRIEMEE 645
Query: 1359 XXXQGKYPEVHIPLENLQQFPAFNSYTCSSDSALGPTSTEGHGAXXXXXXXXXXXXQADF 1538
QGKYPEVHIPLENLQQFPAFNSYTC+S+SALGPTSTEGHGA QADF
Sbjct: 646 NKKQGKYPEVHIPLENLQQFPAFNSYTCTSNSALGPTSTEGHGALSLSPLSRSPGSQADF 705
Query: 1539 LLTPVSPTASQGSPSFCVGSLEEDSPFPS 1625
+LTP+SPTASQGSPSFCVGSLEEDSPFPS
Sbjct: 706 MLTPLSPTASQGSPSFCVGSLEEDSPFPS 734
>ref|XP_863522.1| PREDICTED: similar to ring finger protein 10 isoform 7 [Canis
familiaris].
Length = 623
Score = 830 bits (2144), Expect = 0.0
Identities = 418/527 (79%), Positives = 433/527 (82%)
Frame = +3
Query: 45 NCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIF 224
+CQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIF
Sbjct: 2 SCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIF 61
Query: 225 CWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGDTITMQLMKREKGVL 404
CWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGDTITMQLMKREKGVL
Sbjct: 62 CWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGDTITMQLMKREKGVL 121
Query: 405 VALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVIXXXXXXXXXXXXXXXHTPE 584
+ALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRV+ HTPE
Sbjct: 122 LALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVREERVALEQQLAEEKHTPE 181
Query: 585 SCFIEAAIQELKTREEALSGLAESREAVTGVVAALEQLVLMAPLEKESLFQPRKGVLEYL 764
SCFIEAAIQELKTREEALSGL SR GV+ ALEQLVLMAPL KES+ QPRKGVLEYL
Sbjct: 182 SCFIEAAIQELKTREEALSGLPGSRGEAAGVMPALEQLVLMAPLAKESVLQPRKGVLEYL 241
Query: 765 SAFDEETTEVCSLGAPSRPXXXXXXXXXXXXXXXXXXXXXXXCNDLELAEDSLGEGTICA 944
SAFDEETTEVCSLG+P RP C+D ELA+DSLGEGTIC
Sbjct: 242 SAFDEETTEVCSLGSP-RP----LALPLVEEEEAVSEPEPEACDDAELADDSLGEGTICT 296
Query: 945 ESSQQEPVTKPSITHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLEQSPEKISAT 1124
ESSQQEP++KP THLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLEQSPEKISA
Sbjct: 297 ESSQQEPISKPGFTHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLEQSPEKISAV 356
Query: 1125 VVEIVGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPLVSKETLEIFSDDIXXXXXXX 1304
VVEI GYSMSEDVRQRHRYLSHLPLTCEFSICELALQPP+VSKETLEIFSDDI
Sbjct: 357 VVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEIFSDDIEKRKRQR 416
Query: 1305 XXXXXXXXXXXXXXXXXXXXXQGKYPEVHIPLENLQQFPAFNSYTCSSDSALGPTSTEGH 1484
QGKYPEVHIPLENLQQFPAFNSYTC+S+SALGPTSTEGH
Sbjct: 417 QKKAREERRRERRIEMEENKKQGKYPEVHIPLENLQQFPAFNSYTCTSNSALGPTSTEGH 476
Query: 1485 GAXXXXXXXXXXXXQADFLLTPVSPTASQGSPSFCVGSLEEDSPFPS 1625
GA QADF+LTP+SPTASQGSPSFCVGSLEEDSPFPS
Sbjct: 477 GALSLSPLSRSPGSQADFMLTPLSPTASQGSPSFCVGSLEEDSPFPS 523
>ref|XP_863488.1| PREDICTED: similar to ring finger protein 10 isoform 5 [Canis
familiaris].
Length = 695
Score = 805 bits (2079), Expect = 0.0
Identities = 405/511 (79%), Positives = 417/511 (81%)
Frame = +3
Query: 3 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 182
WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY
Sbjct: 171 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 230
Query: 183 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD 362
PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD
Sbjct: 231 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD 290
Query: 363 TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVIXXXXX 542
TITMQLMKREKGVL+ALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRV+
Sbjct: 291 TITMQLMKREKGVLLALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVREERV 350
Query: 543 XXXXXXXXXXHTPESCFIEAAIQELKTREEALSGLAESREAVTGVVAALEQLVLMAPLEK 722
HTPESCFIEAAIQELKTREEALSGL SR GV+ ALEQLVLMAPL K
Sbjct: 351 ALEQQLAEEKHTPESCFIEAAIQELKTREEALSGLPGSRGEAAGVMPALEQLVLMAPLAK 410
Query: 723 ESLFQPRKGVLEYLSAFDEETTEVCSLGAPSRPXXXXXXXXXXXXXXXXXXXXXXXCNDL 902
ES+ QPRKGVLEYLSAFDEETTEVCSLG+P RP C+D
Sbjct: 411 ESVLQPRKGVLEYLSAFDEETTEVCSLGSP-RP----LALPLVEEEEAVSEPEPEACDDA 465
Query: 903 ELAEDSLGEGTICAESSQQEPVTKPSITHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE 1082
ELA+DSLGEGTIC ESSQQEP++KP THLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE
Sbjct: 466 ELADDSLGEGTICTESSQQEPISKPGFTHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE 525
Query: 1083 YGSLEQSPEKISATVVEIVGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPLVSKETL 1262
YGSLEQSPEKISA VVEI GYSMSEDVRQRHRYLSHLPLTCEFSICELALQPP+VSKETL
Sbjct: 526 YGSLEQSPEKISAVVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETL 585
Query: 1263 EIFSDDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKYPEVHIPLENLQQFPAFNSYTC 1442
EIFSDDI QGKYPEVHIPLENLQQFPAFNSYTC
Sbjct: 586 EIFSDDIEKRKRQRQKKAREERRRERRIEMEENKKQGKYPEVHIPLENLQQFPAFNSYTC 645
Query: 1443 SSDSALGPTSTEGHGAXXXXXXXXXXXXQAD 1535
+S+SALGPTSTEGHGA QAD
Sbjct: 646 TSNSALGPTSTEGHGALSLSPLSRSPGSQAD 676
>ref|XP_534709.2| PREDICTED: similar to ring finger protein 10 isoform 1 [Canis
familiaris].
Length = 797
Score = 796 bits (2056), Expect = 0.0
Identities = 406/541 (75%), Positives = 425/541 (78%)
Frame = +3
Query: 3 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 182
WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY
Sbjct: 171 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 230
Query: 183 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD 362
PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD
Sbjct: 231 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD 290
Query: 363 TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVIXXXXX 542
TITMQLMKREKGVL+ALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRV+
Sbjct: 291 TITMQLMKREKGVLLALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVREERV 350
Query: 543 XXXXXXXXXXHTPESCFIEAAIQELKTREEALSGLAESREAVTGVVAALEQLVLMAPLEK 722
HTPESCFIEAAIQELK R L L +++V + +L K
Sbjct: 351 ALEQQLAEEKHTPESCFIEAAIQELKERRADL--LIFKKDSVLVLSLSLTD-------SK 401
Query: 723 ESLFQPRKGVLEYLSAFDEETTEVCSLGAPSRPXXXXXXXXXXXXXXXXXXXXXXXCNDL 902
++ VL YLSAFDEETTEVCSLG+P RP C+D
Sbjct: 402 QNTILFESQVLFYLSAFDEETTEVCSLGSP-RP----LALPLVEEEEAVSEPEPEACDDA 456
Query: 903 ELAEDSLGEGTICAESSQQEPVTKPSITHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE 1082
ELA+DSLGEGTIC ESSQQEP++KP THLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE
Sbjct: 457 ELADDSLGEGTICTESSQQEPISKPGFTHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE 516
Query: 1083 YGSLEQSPEKISATVVEIVGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPLVSKETL 1262
YGSLEQSPEKISA VVEI GYSMSEDVRQRHRYLSHLPLTCEFSICELALQPP+VSKETL
Sbjct: 517 YGSLEQSPEKISAVVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETL 576
Query: 1263 EIFSDDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKYPEVHIPLENLQQFPAFNSYTC 1442
EIFSDDI QGKYPEVHIPLENLQQFPAFNSYTC
Sbjct: 577 EIFSDDIEKRKRQRQKKAREERRRERRIEMEENKKQGKYPEVHIPLENLQQFPAFNSYTC 636
Query: 1443 SSDSALGPTSTEGHGAXXXXXXXXXXXXQADFLLTPVSPTASQGSPSFCVGSLEEDSPFP 1622
+S+SALGPTSTEGHGA QADF+LTP+SPTASQGSPSFCVGSLEEDSPFP
Sbjct: 637 TSNSALGPTSTEGHGALSLSPLSRSPGSQADFMLTPLSPTASQGSPSFCVGSLEEDSPFP 696
Query: 1623 S 1625
S
Sbjct: 697 S 697
>ref|XP_863504.1| PREDICTED: similar to ring finger protein 10 isoform 6 [Canis
familiaris].
Length = 509
Score = 565 bits (1455), Expect = e-161
Identities = 280/342 (81%), Positives = 289/342 (84%)
Frame = +3
Query: 3 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 182
WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY
Sbjct: 171 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 230
Query: 183 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD 362
PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD
Sbjct: 231 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD 290
Query: 363 TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVIXXXXX 542
TITMQLMKREKGVL+ALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRV+
Sbjct: 291 TITMQLMKREKGVLLALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVREERV 350
Query: 543 XXXXXXXXXXHTPESCFIEAAIQELKTREEALSGLAESREAVTGVVAALEQLVLMAPLEK 722
HTPESCFIEAAIQELKTREEALSGL SR GV+ ALEQLVLMAPL K
Sbjct: 351 ALEQQLAEEKHTPESCFIEAAIQELKTREEALSGLPGSRGEAAGVMPALEQLVLMAPLAK 410
Query: 723 ESLFQPRKGVLEYLSAFDEETTEVCSLGAPSRPXXXXXXXXXXXXXXXXXXXXXXXCNDL 902
ES+ QPRKGVLEYLSAFDEETTEVCSLG+P RP C+D
Sbjct: 411 ESVLQPRKGVLEYLSAFDEETTEVCSLGSP-RP----LALPLVEEEEAVSEPEPEACDDA 465
Query: 903 ELAEDSLGEGTICAESSQQEPVTKPSITHLSSSPCYYFYQAE 1028
ELA+DSLGEGTIC ESSQQEP++KP THLSSSPCYYFYQ E
Sbjct: 466 ELADDSLGEGTICTESSQQEPISKPGFTHLSSSPCYYFYQGE 507
>ref|XP_863438.1| PREDICTED: similar to ring finger protein 10 isoform 3 [Canis
familiaris].
Length = 295
Score = 292 bits (747), Expect = 7e-79
Identities = 148/195 (75%), Positives = 153/195 (78%)
Frame = +3
Query: 1041 MFLHPVNVRCLVREYGSLEQSPEKISATVVEIVGYSMSEDVRQRHRYLSHLPLTCEFSIC 1220
MFLHPVNVRCLVREYGSLEQSPEKISA VVEI GYSMSEDVRQRHRYLSHLPLTCEFSIC
Sbjct: 1 MFLHPVNVRCLVREYGSLEQSPEKISAVVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSIC 60
Query: 1221 ELALQPPLVSKETLEIFSDDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKYPEVHIPL 1400
ELALQPP+VSKETLEIFSDDI QGKYPEVHIPL
Sbjct: 61 ELALQPPVVSKETLEIFSDDIEKRKRQRQKKAREERRRERRIEMEENKKQGKYPEVHIPL 120
Query: 1401 ENLQQFPAFNSYTCSSDSALGPTSTEGHGAXXXXXXXXXXXXQADFLLTPVSPTASQGSP 1580
ENLQQFPAFNSYTC+S+SALGPTSTEGHGA QADF+LTP+SPTASQGSP
Sbjct: 121 ENLQQFPAFNSYTCTSNSALGPTSTEGHGALSLSPLSRSPGSQADFMLTPLSPTASQGSP 180
Query: 1581 SFCVGSLEEDSPFPS 1625
SFCVGSLEEDSPFPS
Sbjct: 181 SFCVGSLEEDSPFPS 195
>ref|XP_852019.1| PREDICTED: similar to elongation factor Tu GTP binding domain
containing 1 [Canis familiaris].
Length = 198
Score = 119 bits (299), Expect = 6e-27
Identities = 59/77 (76%), Positives = 65/77 (84%)
Frame = -1
Query: 1175 MTLSNILRHGVTNDLHHRGRDFLRALLQAAILPHKAAHIHRV*EHVLPILRLVKVVTRRA 996
M LSNIL +GV DLHH +D L ALLQAA+ PHKAAHIHRV EHVLP+LRLVKVVTRRA
Sbjct: 1 MVLSNILGYGVVRDLHHYCQDLLWALLQAAVFPHKAAHIHRVQEHVLPVLRLVKVVTRRA 60
Query: 995 AQVCDAWLGDRFLLAGL 945
AQ+C+AWL D FLLAGL
Sbjct: 61 AQMCEAWLADGFLLAGL 77
>ref|XP_863465.1| PREDICTED: similar to ring finger protein 10 isoform 4 [Canis
familiaris].
Length = 129
Score = 60.8 bits (146), Expect = 4e-09
Identities = 27/29 (93%), Positives = 29/29 (100%)
Frame = +3
Query: 1539 LLTPVSPTASQGSPSFCVGSLEEDSPFPS 1625
+LTP+SPTASQGSPSFCVGSLEEDSPFPS
Sbjct: 1 MLTPLSPTASQGSPSFCVGSLEEDSPFPS 29
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,993,202
Number of extensions: 1666925
Number of successful extensions: 6205
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6159
Number of HSP's successfully gapped: 8
Length of query: 545
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 437
Effective length of database: 15,274,216
Effective search space: 6674832392
Effective search space used: 6674832392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002256
(1637 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055683.3| RING finger protein 10 [Homo sapiens]. 874 0.0
>ref|NP_055683.3| RING finger protein 10 [Homo sapiens].
Length = 811
Score = 874 bits (2259), Expect = 0.0
Identities = 437/541 (80%), Positives = 447/541 (82%)
Frame = +3
Query: 3 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 182
WGHKPFNKELFLQANCQFVVSEDQDYT HFADPDTLVNWDFVEQVRICSHEVPSCPICLY
Sbjct: 171 WGHKPFNKELFLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 230
Query: 183 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD 362
PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATES QYVVGD
Sbjct: 231 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGD 290
Query: 363 TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVIXXXXX 542
TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRV+
Sbjct: 291 TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVLEEKV 350
Query: 543 XXXXXXXXXXHTPESCFIEAAIQELKTREEALSGLAESREAVTGVVAALEQLVLMAPLEK 722
HTPESCFIEAAIQELKTREEALSGLA SR VTGVVAALEQLVLMAPL K
Sbjct: 351 ALEQQLAEEKHTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVLMAPLAK 410
Query: 723 ESLFQPRKGVLEYLSAFDEETTEVCSLGAPSRPXXXXXXXXXXXXXXXXXXXXXXXCNDL 902
ES+FQPRKGVLEYLSAFDEETTEVCSL PSRP C+DL
Sbjct: 411 ESVFQPRKGVLEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDL 470
Query: 903 ELAEDSLGEGTICAESSQQEPVTKPSITHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE 1082
ELA+D+L EGTIC ESSQQEP+TK T LSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE
Sbjct: 471 ELADDNLKEGTICTESSQQEPITKSGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE 530
Query: 1083 YGSLEQSPEKISATVVEIVGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPLVSKETL 1262
YGSLE+SPEKISATVVEI GYSMSEDVRQRHRYLSHLPLTCEFSICELALQPP+VSKETL
Sbjct: 531 YGSLERSPEKISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETL 590
Query: 1263 EIFSDDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKYPEVHIPLENLQQFPAFNSYTC 1442
E+FSDDI QGKYPEVHIPLENLQQFPAFNSYTC
Sbjct: 591 EMFSDDIEKRKRQRQKKAREERRRERRIEIEENKKQGKYPEVHIPLENLQQFPAFNSYTC 650
Query: 1443 SSDSALGPTSTEGHGAXXXXXXXXXXXXQADFLLTPVSPTASQGSPSFCVGSLEEDSPFP 1622
SSDSALGPTSTEGHGA ADFLLTP+SPTASQGSPSFCVGSLEEDSPFP
Sbjct: 651 SSDSALGPTSTEGHGALSISPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEEDSPFP 710
Query: 1623 S 1625
S
Sbjct: 711 S 711
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,168,591
Number of extensions: 1659414
Number of successful extensions: 6478
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6419
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 438
Effective length of database: 14,770,016
Effective search space: 6469267008
Effective search space used: 6469267008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002256
(1637 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057907.2| RING finger protein 10 [Mus musculus]. 821 0.0
>ref|NP_057907.2| RING finger protein 10 [Mus musculus].
Length = 804
Score = 821 bits (2120), Expect = 0.0
Identities = 413/541 (76%), Positives = 430/541 (79%)
Frame = +3
Query: 3 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 182
WGHKPFNKELFLQANCQFVVSEDQDY HFADPDTLVNWDFVEQVRICSHEVPSCPICLY
Sbjct: 171 WGHKPFNKELFLQANCQFVVSEDQDYAAHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 230
Query: 183 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD 362
PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQY VGD
Sbjct: 231 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYAVGD 290
Query: 363 TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVIXXXXX 542
TITMQLMKREKGVLVALPKSKW+NVDHPI+LGDEQ SQYSKLLLASKEQVLHRV+
Sbjct: 291 TITMQLMKREKGVLVALPKSKWVNVDHPINLGDEQLSQYSKLLLASKEQVLHRVVLEEKG 350
Query: 543 XXXXXXXXXXHTPESCFIEAAIQELKTREEALSGLAESREAVTGVVAALEQLVLMAPLEK 722
HTPESCFIEAAIQE+K REEALSG+A VTGVVAALE LVLMAPL
Sbjct: 351 ALEQQLAEEKHTPESCFIEAAIQEVKIREEALSGVAGGGGEVTGVVAALEHLVLMAPLAT 410
Query: 723 ESLFQPRKGVLEYLSAFDEETTEVCSLGAPSRPXXXXXXXXXXXXXXXXXXXXXXXCNDL 902
ES FQPRKGVLEYLSAFD+E +VCSL P C D
Sbjct: 411 ESAFQPRKGVLEYLSAFDDEAAQVCSLDPPG-------PLALPLVEEEEAVSEPEACEDA 463
Query: 903 ELAEDSLGEGTICAESSQQEPVTKPSITHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE 1082
E+A+DSLGEGT+ E SQ+EP+TKP T LSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE
Sbjct: 464 EVADDSLGEGTVGPEMSQEEPITKPGFTQLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE 523
Query: 1083 YGSLEQSPEKISATVVEIVGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPLVSKETL 1262
YGSLEQSPEKISATVVEI GYSMSEDVRQRHRYLSHLPLTCEFSICELALQPP+VSKETL
Sbjct: 524 YGSLEQSPEKISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETL 583
Query: 1263 EIFSDDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKYPEVHIPLENLQQFPAFNSYTC 1442
E+FSDDI QG+YPEVHIPLENLQQFPAFNSYTC
Sbjct: 584 EMFSDDIEKRKRQRQKKAREERRRERRIEMEENKRQGRYPEVHIPLENLQQFPAFNSYTC 643
Query: 1443 SSDSALGPTSTEGHGAXXXXXXXXXXXXQADFLLTPVSPTASQGSPSFCVGSLEEDSPFP 1622
SDSALGPTSTEGHGA ADFLLTP+SPTASQGSPSFCVGSLE+DSPF
Sbjct: 644 PSDSALGPTSTEGHGALSLSPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEDDSPFL 703
Query: 1623 S 1625
S
Sbjct: 704 S 704
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,030,508
Number of extensions: 1404187
Number of successful extensions: 5216
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5184
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 439
Effective length of database: 12,433,743
Effective search space: 5458413177
Effective search space used: 5458413177
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002256
(1637 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359171.1| PREDICTED: RING finger protein 10 isoform 2 ... 917 0.0
Alignment gi|XP_001925391.3| PREDICTED: RING finger protein 10 isoform 1 ... 917 0.0
>ref|XP_003359171.1| PREDICTED: RING finger protein 10 isoform 2 [Sus scrofa].
Length = 811
Score = 917 bits (2370), Expect = 0.0
Identities = 462/541 (85%), Positives = 462/541 (85%)
Frame = +3
Query: 3 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 182
WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY
Sbjct: 171 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 230
Query: 183 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD 362
PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD
Sbjct: 231 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD 290
Query: 363 TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVIXXXXX 542
TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVI
Sbjct: 291 TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVIQEEKA 350
Query: 543 XXXXXXXXXXHTPESCFIEAAIQELKTREEALSGLAESREAVTGVVAALEQLVLMAPLEK 722
HTPESCFIEAAIQELKTREEALSGLAESREAVTGVVAALEQLVLMAPLEK
Sbjct: 351 ALEQQLAEEKHTPESCFIEAAIQELKTREEALSGLAESREAVTGVVAALEQLVLMAPLEK 410
Query: 723 ESLFQPRKGVLEYLSAFDEETTEVCSLGAPSRPXXXXXXXXXXXXXXXXXXXXXXXCNDL 902
ESLFQPRKGVLEYLSAFDEETTEVCSLGAPSRP CNDL
Sbjct: 411 ESLFQPRKGVLEYLSAFDEETTEVCSLGAPSRPLALPLVEEEEAVSEPEPEGSSEACNDL 470
Query: 903 ELAEDSLGEGTICAESSQQEPVTKPSITHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE 1082
ELAEDSLGEGTICAESSQQEPVTKPSITHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE
Sbjct: 471 ELAEDSLGEGTICAESSQQEPVTKPSITHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE 530
Query: 1083 YGSLEQSPEKISATVVEIVGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPLVSKETL 1262
YGSLEQSPEKISATVVEIVGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPLVSKETL
Sbjct: 531 YGSLEQSPEKISATVVEIVGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPLVSKETL 590
Query: 1263 EIFSDDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKYPEVHIPLENLQQFPAFNSYTC 1442
EIFSDDI QGKYPEVHIPLENLQQFPAFNSYTC
Sbjct: 591 EIFSDDIEKRKRQRQKKAREERRRERRIEMEENKKQGKYPEVHIPLENLQQFPAFNSYTC 650
Query: 1443 SSDSALGPTSTEGHGAXXXXXXXXXXXXQADFLLTPVSPTASQGSPSFCVGSLEEDSPFP 1622
SSDSALGPTSTE HGA QADFLLTPVSPTASQGSPSFCVGSLEEDSPFP
Sbjct: 651 SSDSALGPTSTESHGALSLSPLSRSPGSQADFLLTPVSPTASQGSPSFCVGSLEEDSPFP 710
Query: 1623 S 1625
S
Sbjct: 711 S 711
>ref|XP_001925391.3| PREDICTED: RING finger protein 10 isoform 1 [Sus scrofa].
Length = 811
Score = 917 bits (2370), Expect = 0.0
Identities = 462/541 (85%), Positives = 462/541 (85%)
Frame = +3
Query: 3 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 182
WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY
Sbjct: 171 WGHKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLY 230
Query: 183 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD 362
PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD
Sbjct: 231 PPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGD 290
Query: 363 TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVIXXXXX 542
TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVI
Sbjct: 291 TITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVIQEEKA 350
Query: 543 XXXXXXXXXXHTPESCFIEAAIQELKTREEALSGLAESREAVTGVVAALEQLVLMAPLEK 722
HTPESCFIEAAIQELKTREEALSGLAESREAVTGVVAALEQLVLMAPLEK
Sbjct: 351 ALEQQLAEEKHTPESCFIEAAIQELKTREEALSGLAESREAVTGVVAALEQLVLMAPLEK 410
Query: 723 ESLFQPRKGVLEYLSAFDEETTEVCSLGAPSRPXXXXXXXXXXXXXXXXXXXXXXXCNDL 902
ESLFQPRKGVLEYLSAFDEETTEVCSLGAPSRP CNDL
Sbjct: 411 ESLFQPRKGVLEYLSAFDEETTEVCSLGAPSRPLALPLVEEEEAVSEPEPEGSSEACNDL 470
Query: 903 ELAEDSLGEGTICAESSQQEPVTKPSITHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE 1082
ELAEDSLGEGTICAESSQQEPVTKPSITHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE
Sbjct: 471 ELAEDSLGEGTICAESSQQEPVTKPSITHLSSSPCYYFYQAEDGQHMFLHPVNVRCLVRE 530
Query: 1083 YGSLEQSPEKISATVVEIVGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPLVSKETL 1262
YGSLEQSPEKISATVVEIVGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPLVSKETL
Sbjct: 531 YGSLEQSPEKISATVVEIVGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPLVSKETL 590
Query: 1263 EIFSDDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKYPEVHIPLENLQQFPAFNSYTC 1442
EIFSDDI QGKYPEVHIPLENLQQFPAFNSYTC
Sbjct: 591 EIFSDDIEKRKRQRQKKAREERRRERRIEMEENKKQGKYPEVHIPLENLQQFPAFNSYTC 650
Query: 1443 SSDSALGPTSTEGHGAXXXXXXXXXXXXQADFLLTPVSPTASQGSPSFCVGSLEEDSPFP 1622
SSDSALGPTSTE HGA QADFLLTPVSPTASQGSPSFCVGSLEEDSPFP
Sbjct: 651 SSDSALGPTSTESHGALSLSPLSRSPGSQADFLLTPVSPTASQGSPSFCVGSLEEDSPFP 710
Query: 1623 S 1625
S
Sbjct: 711 S 711
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,993,343
Number of extensions: 1046443
Number of successful extensions: 4108
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4088
Number of HSP's successfully gapped: 2
Length of query: 545
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 441
Effective length of database: 8,754,644
Effective search space: 3860798004
Effective search space used: 3860798004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002256
(1637 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 553 e-154
>Sscrofa_Chr14
|| Length = 153851969
Score = 553 bits (279), Expect = e-154
Identities = 279/279 (100%)
Strand = Plus / Plus
Query: 745 agggtgtgctagaatatctgtctgcttttgatgaagaaaccaccgaggtttgttctctgg 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42976032 agggtgtgctagaatatctgtctgcttttgatgaagaaaccaccgaggtttgttctctgg 42976091
Query: 805 gcgctccttctcgtcctcttgctctccctctggtagaggaagaggaagcagtgtctgaac 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42976092 gcgctccttctcgtcctcttgctctccctctggtagaggaagaggaagcagtgtctgaac 42976151
Query: 865 cagagcccgaggggtcatcagaggcctgtaatgacttggagttagcagaagacagtcttg 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42976152 cagagcccgaggggtcatcagaggcctgtaatgacttggagttagcagaagacagtcttg 42976211
Query: 925 gagaggggaccatttgtgccgagtccagccagcaggaacctgtcaccaagccaagcatca 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42976212 gagaggggaccatttgtgccgagtccagccagcaggaacctgtcaccaagccaagcatca 42976271
Query: 985 cacacctgagcagctctccttgttactacttttaccaag 1023
|||||||||||||||||||||||||||||||||||||||
Sbjct: 42976272 cacacctgagcagctctccttgttactacttttaccaag 42976310
Score = 361 bits (182), Expect = 8e-97
Identities = 185/186 (99%)
Strand = Plus / Plus
Query: 137 gcgcatttgtagccatgaagtgccatcttgtccaatatgcctatacccacctactgcagc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42969792 gcgcatttgtagccatgaagtgccatcttgtccaatatgcctatacccacctactgcagc 42969851
Query: 197 caagataacccgttgtggacacatcttctgttgggcatgcatcctgcactacctttcact 256
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 42969852 caagataacccgttgtggacacatcttctgttgggcatgcatcctgcactatctttcact 42969911
Query: 257 gagtgagaagacctggagtaaatgtcccatctgttatagttctgtgcacaagaaggatct 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42969912 gagtgagaagacctggagtaaatgtcccatctgttatagttctgtgcacaagaaggatct 42969971
Query: 317 taagag 322
||||||
Sbjct: 42969972 taagag 42969977
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 458 agatgaacagcacagccagtactccaaattgcttctggcctctaaggagcaggtgctgca 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42973948 agatgaacagcacagccagtactccaaattgcttctggcctctaaggagcaggtgctgca 42974007
Query: 518 ccgggtgattcaggaagagaaggcggcactagagcagcagctggcagaggagaagcacac 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42974008 ccgggtgattcaggaagagaaggcggcactagagcagcagctggcagaggagaagcacac 42974067
Query: 578 tcccgagtcctgctttatcgaggcagctatccaggagctcaag 620
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42974068 tcccgagtcctgctttatcgaggcagctatccaggagctcaag 42974110
Score = 301 bits (152), Expect = 6e-79
Identities = 155/156 (99%)
Strand = Plus / Plus
Query: 1378 atccggaagtccacattcccctagagaatctacagcagtttcctgccttcaattcctata 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42981208 atccggaagtccacattcccctagagaatctacagcagtttcctgccttcaattcctata 42981267
Query: 1438 cctgctcctccgattctgctttgggtcccaccagcactgagggccatggggctctctcac 1497
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 42981268 cctgctcctccgattctgctttgggtcccaccagcactgagagccatggggctctctcac 42981327
Query: 1498 tctctcctcttagcagaagtccgggttcccaagcag 1533
||||||||||||||||||||||||||||||||||||
Sbjct: 42981328 tctctcctcttagcagaagtccgggttcccaagcag 42981363
Score = 276 bits (139), Expect = 4e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 321 agtgttgttgccacagaatcacgtcagtatgttgttggtgatacaattacaatgcagctg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42970052 agtgttgttgccacagaatcacgtcagtatgttgttggtgatacaattacaatgcagctg 42970111
Query: 381 atgaagagggagaaaggagtgttggtggccttgcctaaatccaagtggatgaatgtagac 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42970112 atgaagagggagaaaggagtgttggtggccttgcctaaatccaagtggatgaatgtagac 42970171
Query: 441 catcctatacatcttggag 459
|||||||||||||||||||
Sbjct: 42970172 catcctatacatcttggag 42970190
Score = 272 bits (137), Expect = 6e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 1022 agcggaggatgggcaacacatgttcctacaccctgtgaatgtgcgctgccttgtgcggga 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42976522 agcggaggatgggcaacacatgttcctacaccctgtgaatgtgcgctgccttgtgcggga 42976581
Query: 1082 gtatggcagcctggagcagagccctgagaaaatctcggccacggtggtggagatcgttgg 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42976582 gtatggcagcctggagcagagccctgagaaaatctcggccacggtggtggagatcgttgg 42976641
Query: 1142 ttactccatgtctgagg 1158
|||||||||||||||||
Sbjct: 42976642 ttactccatgtctgagg 42976658
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 619 agactcgggaagaggctctgtcaggattggctgaaagcagagaggcggtcactggtgtcg 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42975660 agactcgggaagaggctctgtcaggattggctgaaagcagagaggcggtcactggtgtcg 42975719
Query: 679 tggctgctttggaacaactggtgctgatggctcccttggagaaggagtctctttttcaac 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42975720 tggctgctttggaacaactggtgctgatggctcccttggagaaggagtctctttttcaac 42975779
Query: 739 ccaggaagg 747
|||||||||
Sbjct: 42975780 ccaggaagg 42975788
Score = 238 bits (120), Expect = 8e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1156 aggatgttcgacagcgtcataggtacctctctcacttgccgctcacctgcgagttcagca 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42977819 aggatgttcgacagcgtcataggtacctctctcacttgccgctcacctgcgagttcagca 42977878
Query: 1216 tctgtgaactggctttgcagcctcctctagtctccaaggaaacactagagatattctcag 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42977879 tctgtgaactggctttgcagcctcctctagtctccaaggaaacactagagatattctcag 42977938
Score = 208 bits (105), Expect = 7e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1273 cagatgacattgagaagaggaagcgtcagcgtcagaagaaagcccgggaggaacgccgcc 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42979408 cagatgacattgagaagaggaagcgtcagcgtcagaagaaagcccgggaggaacgccgcc 42979467
Query: 1333 gagagcgccggattgagatggaggagaacaagaaacagggcaagt 1377
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42979468 gagagcgccggattgagatggaggagaacaagaaacagggcaagt 42979512
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1531 cagactttctcctgacccctgtgtcacccactgccagtcagggcagtccttcattctgcg 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42983670 cagactttctcctgacccctgtgtcacccactgccagtcagggcagtccttcattctgcg 42983729
Query: 1591 ttgggagtctggaagaagactctcccttcccttc 1624
||||||||||||||||||||||||||||||||||
Sbjct: 42983730 ttgggagtctggaagaagactctcccttcccttc 42983763
Score = 180 bits (91), Expect = 2e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 47 ctgccagtttgtggtgtctgaagaccaagactacacagttcattttgctgatcctgatac 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42914004 ctgccagtttgtggtgtctgaagaccaagactacacagttcattttgctgatcctgatac 42913945
Query: 107 cttagtcaactgggactttgtggaacaagtg 137
|||||||||||||||||||||||||||||||
Sbjct: 42913944 cttagtcaactgggactttgtggaacaagtg 42913914
Score = 91.7 bits (46), Expect = 1e-15
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 1 agtgggggcataagccttttaataaggaactctttttacaagccaa 46
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42915535 agtgggggcataagccttttaataaggaactctttttacaagccaa 42915490
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,402,557
Number of extensions: 285
Number of successful extensions: 285
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 12
Length of query: 1637
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1615
Effective length of database: 2,808,408,574
Effective search space: 4535579847010
Effective search space used: 4535579847010
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)