Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002265
(2322 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029466.1| transitional endoplasmic reticulum ATPase [B... 755 0.0
Alignment gi|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like... 308 1e-83
Alignment gi|XP_002694038.1| PREDICTED: nuclear VCP-like [Bos taurus]. 270 5e-72
Alignment gi|XP_611864.5| PREDICTED: nuclear VCP-like [Bos taurus]. 268 1e-71
Alignment gi|NP_001099095.1| spermatogenesis-associated protein 5-like pr... 256 5e-68
Alignment gi|XP_001787757.2| PREDICTED: Cell Division Cycle related famil... 249 8e-66
Alignment gi|XP_002686698.1| PREDICTED: peroxisomal biogenesis factor 1 [... 236 5e-62
Alignment gi|NP_001179000.1| peroxisome biogenesis factor 1 [Bos taurus]. 235 1e-61
Alignment gi|NP_001179876.1| peroxisome assembly factor 2 [Bos taurus]. 235 1e-61
Alignment gi|XP_002697291.1| PREDICTED: peroxisomal biogenesis factor 6 [... 235 1e-61
>ref|NP_001029466.1| transitional endoplasmic reticulum ATPase [Bos taurus].
Length = 806
Score = 755 bits (1950), Expect = 0.0
Identities = 388/438 (88%), Positives = 388/438 (88%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 361
LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488
Query: 362 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 541
LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL
Sbjct: 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548
Query: 542 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEM 721
TMWFGESEANVREIFDKARQAAPCVLFFDELDSI DRVINQILTEM
Sbjct: 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608
Query: 722 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 901
DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK
Sbjct: 609 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668
Query: 902 DVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPV 1081
DVDLEFLAKMTNGFSGADLTEICQRACKLA QTNPSAMEVEEDDPV
Sbjct: 669 DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 728
Query: 1082 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPXXXXXXXXXXXXXX 1261
PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFP
Sbjct: 729 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSG 788
Query: 1262 XXXXXXVYTEDNDDDLYG 1315
VYTEDNDDDLYG
Sbjct: 789 GGTGGNVYTEDNDDDLYG 806
Score = 188 bits (477), Expect = 2e-47
Identities = 93/222 (41%), Positives = 142/222 (63%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+I
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 674 XXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 853
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 320 VER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 854 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
R+ IL+ + + +A DVDLE +A T+G GADL +C A
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEA 418
>ref|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like, partial [Bos taurus].
Length = 1004
Score = 308 bits (789), Expect = 1e-83
Identities = 155/331 (46%), Positives = 222/331 (67%), Gaps = 1/331 (0%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMK-LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 178
IG+P+A RL+ILQ + + L + +L Q+AN HG+VGADL ALC+EA L A+R+
Sbjct: 632 IGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEAGLHALRR-- 689
Query: 179 DLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 358
++ + D+++ + +T+ DF ++ PSA+RE V+VP V+W DIGGLE+VK
Sbjct: 690 -VLRRQPNLPDSKMAGLVKITLKDFLQGMNDIRPSAMREVAVDVPNVSWSDIGGLENVKL 748
Query: 359 ELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 538
+L++ V++P++HP+ F + G+ P KGVL YGPPGC KT++AKA+ANE NF++IKGPEL
Sbjct: 749 KLKQAVEWPLKHPESFTQMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPEL 808
Query: 539 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTE 718
+ + GESE VREIF KAR AP ++FFDELD++ DRV+ Q+LTE
Sbjct: 809 MNKYVGESERAVREIFRKARAVAPSIIFFDELDAL-AVERGSSSGAGNVADRVLAQLLTE 867
Query: 719 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA 898
MDG+ KNV I+ ATNRPD ID A++RPGR+D++IY+PLPD +R IL P+
Sbjct: 868 MDGIEQLKNVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPIN 927
Query: 899 KDVDLEFLAKMTNGFSGADLTEICQRACKLA 991
+VDL L T+ +SGA++ +C+ A LA
Sbjct: 928 NEVDLNELILQTDTYSGAEIIAVCREAALLA 958
Score = 169 bits (429), Expect = 8e-42
Identities = 88/226 (38%), Positives = 143/226 (63%), Gaps = 4/226 (1%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+VT++ IGGL +E++E+++ P++ P+ F +G+ P +GVL YGPPG GKT++A+A+A
Sbjct: 460 KVTYDMIGGLNSQLKEIREIIELPLKQPELFKSYGIPPPRGVLLYGPPGTGKTMIARAVA 519
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A I GPE+++ ++GE+EA +R+IF +A P ++F DELD++
Sbjct: 520 NEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDAL---CPKREGA 576
Query: 674 XXXXXDRVINQILTEMDGMSTKKN---VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 844
RV+ +LT MDG+ ++ + V ++GATNRP +D A+ RPGR D+ I I +P+
Sbjct: 577 QNEVEKRVVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPN 636
Query: 845 EKSRVAILKANLRKSP-VAKDVDLEFLAKMTNGFSGADLTEICQRA 979
+ R+ IL+ LR+ P + + +L LA +G+ GADL +C A
Sbjct: 637 AQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEA 682
>ref|XP_002694038.1| PREDICTED: nuclear VCP-like [Bos taurus].
Length = 864
Score = 270 bits (689), Expect = 5e-72
Identities = 170/451 (37%), Positives = 237/451 (52%), Gaps = 55/451 (12%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
+GIPD R ILQ + ++L + +A+ T G VGADL ALC EAA+ A+ + +
Sbjct: 431 LGIPDEASRERILQTLCRKLRLPETFHFRHLAHLTPGFVGADLMALCREAAMCAVNRVLM 490
Query: 182 LI-----------------DLEDET------------------------IDAEVMNSLAV 238
+ D E+ T + E + L +
Sbjct: 491 ELQGQHKKNPEIEASPSEGDQEERTGAEPTSKTQEELQRLLGLLRNQDPLSEEQLKGLCI 550
Query: 239 TMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVE--------- 391
++DF ALS PSA RE VP VTW DIG LED++ EL + V
Sbjct: 551 ELNDFIVALSSVQPSAKREGFATVPNVTWADIGALEDIREELTMAILVDVGIVFSRFLLC 610
Query: 392 HPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEAN 571
+PD+F G+ GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GESE
Sbjct: 611 NPDQFRVLGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERA 670
Query: 572 VREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVF 751
VR++F +A+ +APCV+FFDE+D++ RV+NQ+LTEMDG+ T++ VF
Sbjct: 671 VRQVFQRAKNSAPCVIFFDEVDALCPRRSARETGASV---RVVNQLLTEMDGLETRQQVF 727
Query: 752 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA---NLRKSPVAKDVDLEFL 922
I+ ATNRPDIIDPAILRPGRLD+ +++ LP R+AILK N K P+ DV+LE +
Sbjct: 728 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAI 787
Query: 923 A--KMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPVPEIRR 1096
A + ++GADL+ + + A A + + + + +I +
Sbjct: 788 AGDLRCDCYTGADLSALVREASICA--------------LKQEMARQKSGSEKGELKISQ 833
Query: 1097 DHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 1189
HFEEA + + S+S D YE +L +
Sbjct: 834 KHFEEAFKKVKSSISKEDRAMYEALQWSLSR 864
Score = 167 bits (422), Expect = 5e-41
Identities = 90/233 (38%), Positives = 138/233 (59%), Gaps = 3/233 (1%)
Frame = +2
Query: 302 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 481
+++ V +ED+GG + +E+ +++ + + HP+ + G+ P +GVL +GPPGCGKTLLA
Sbjct: 256 LQISSVKFEDVGGNDTTLKEVCKMLVH-MRHPEVYHHLGVIPPRGVLLHGPPGCGKTLLA 314
Query: 482 KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXX 661
AIA E + + E+++ GESE +RE+F++A +APC+LF DE+D+I
Sbjct: 315 HAIAGELDLPILKVAATEIVSGVSGESEQKLRELFEQAVSSAPCILFIDEIDAITPKREI 374
Query: 662 XXXXXXXXXDRVINQILTEMD---GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 832
R++ Q+LT MD ++ V +IGATNRPD +DPA+ R GR D+ I +
Sbjct: 375 ASKDMER---RIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICL 431
Query: 833 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 991
+PDE SR IL+ RK + + LA +T GF GADL +C+ A A
Sbjct: 432 GIPDEASRERILQTLCRKLRLPETFHFRHLAHLTPGFVGADLMALCREAAMCA 484
>ref|XP_611864.5| PREDICTED: nuclear VCP-like [Bos taurus].
Length = 917
Score = 268 bits (686), Expect = 1e-71
Identities = 167/447 (37%), Positives = 234/447 (52%), Gaps = 51/447 (11%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK--- 172
+GIPD R ILQ + ++L + +A+ T G VGADL ALC EAA+ A+ +
Sbjct: 488 LGIPDEASRERILQTLCRKLRLPETFHFRHLAHLTPGFVGADLMALCREAAMCAVNRVLM 547
Query: 173 -------------------------------KMDLIDLEDET------------IDAEVM 223
K ++ +++E + E +
Sbjct: 548 ELQGQHKKNPEIEASPSEGDQEERTGAEPTSKTQVLPIQEELQRLLGLLRNQDPLSEEQL 607
Query: 224 NSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDK 403
L + ++DF ALS PSA RE VP VTW DIG LED++ EL + V
Sbjct: 608 KGLCIELNDFIVALSSVQPSAKREGFATVPNVTWADIGALEDIREELTMAILVGVSATKL 667
Query: 404 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 583
FG+ GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GESE VR++
Sbjct: 668 LEVFGLETPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQV 727
Query: 584 FDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGA 763
F +A+ +APCV+FFDE+D++ RV+NQ+LTEMDG+ T++ VFI+ A
Sbjct: 728 FQRAKNSAPCVIFFDEVDALCPRRSARETGASV---RVVNQLLTEMDGLETRQQVFIMAA 784
Query: 764 TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA---NLRKSPVAKDVDLEFLA--K 928
TNRPDIIDPAILRPGRLD+ +++ LP R+AILK N K P+ DV+LE +A
Sbjct: 785 TNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDL 844
Query: 929 MTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPVPEIRRDHFE 1108
+ ++GADL+ + + A A + + + + +I + HFE
Sbjct: 845 RCDCYTGADLSALVREASICA--------------LKQEMARQKSGSEKGELKISQKHFE 890
Query: 1109 EAMRFARRSVSDNDIRKYEMFAQTLQQ 1189
EA + + S+S D YE +L +
Sbjct: 891 EAFKKVKSSISKEDRAMYEALQWSLSR 917
Score = 167 bits (422), Expect = 5e-41
Identities = 90/233 (38%), Positives = 138/233 (59%), Gaps = 3/233 (1%)
Frame = +2
Query: 302 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 481
+++ V +ED+GG + +E+ +++ + + HP+ + G+ P +GVL +GPPGCGKTLLA
Sbjct: 313 LQISSVKFEDVGGNDTTLKEVCKMLVH-MRHPEVYHHLGVIPPRGVLLHGPPGCGKTLLA 371
Query: 482 KAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXX 661
AIA E + + E+++ GESE +RE+F++A +APC+LF DE+D+I
Sbjct: 372 HAIAGELDLPILKVAATEIVSGVSGESEQKLRELFEQAVSSAPCILFIDEIDAITPKREI 431
Query: 662 XXXXXXXXXDRVINQILTEMD---GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 832
R++ Q+LT MD ++ V +IGATNRPD +DPA+ R GR D+ I +
Sbjct: 432 ASKDMER---RIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICL 488
Query: 833 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 991
+PDE SR IL+ RK + + LA +T GF GADL +C+ A A
Sbjct: 489 GIPDEASRERILQTLCRKLRLPETFHFRHLAHLTPGFVGADLMALCREAAMCA 541
>ref|NP_001099095.1| spermatogenesis-associated protein 5-like protein 1 [Bos taurus].
Length = 767
Score = 256 bits (655), Expect = 5e-68
Identities = 152/425 (35%), Positives = 226/425 (53%), Gaps = 33/425 (7%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IG P R ILQ+ T M ++ VDL +A T G+VGADL ALC EAA+QA+
Sbjct: 368 IGTPTLRQRKAILQVITSKMPISGQVDLNLLAEMTVGYVGADLTALCREAAMQALLHSEK 427
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET--VVEVPQVTWEDIGGLEDVK 355
+ ++ TID DF A + PS+ R V ++ V WE IGGLEDVK
Sbjct: 428 --NQDNPTIDET----------DFLEAFKKIQPSSFRSVIGVTDIKPVGWEQIGGLEDVK 475
Query: 356 RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 535
+L++ +++P++ P +F++ G+T KGVL YGPPGC KT L +A+A C+ +F+S+ G +
Sbjct: 476 LKLKQSIEWPLKFPREFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCRCSFVSVSGAD 535
Query: 536 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILT 715
L + + G+SE + ++F +AR P ++F DE+DSI DRV++ +L
Sbjct: 536 LFSPFVGDSEKILSQVFRQARANTPAIVFLDEIDSI-LGSRSISRTECNVQDRVLSVLLN 594
Query: 716 EMDGMSTK-------------------------------KNVFIIGATNRPDIIDPAILR 802
E+DG+ K NV ++ ATNRPD++D A+LR
Sbjct: 595 ELDGVGLKTIERRGSKSDQHGKCKQLEKNEELEFQEIFNSNVIVVAATNRPDVLDDALLR 654
Query: 803 PGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 982
PGRLD++IYIP PDEK R++ILK + +P+ DV LE +A T FSGADL +C+ A
Sbjct: 655 PGRLDKIIYIPPPDEKGRLSILKVCTKNTPMGPDVSLEKVAAETCFFSGADLGNLCKEAA 714
Query: 983 KLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKY 1162
LA E V ++++HF E+++ + S+S D+ Y
Sbjct: 715 LLALQ----------------------ENGLEVTTVKQEHFLESLKTVKPSLSHKDLTLY 752
Query: 1163 EMFAQ 1177
+ Q
Sbjct: 753 KNLFQ 757
Score = 168 bits (426), Expect = 2e-41
Identities = 97/247 (39%), Positives = 140/247 (56%), Gaps = 3/247 (1%)
Frame = +2
Query: 260 ALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGV 439
+LS+ PS E EVP +GGL + L+EL++ P+ +P G+ +GV
Sbjct: 185 SLSEVPPSE-EEPQPEVP------LGGLSEAADSLRELLRLPLRYPRALASLGLEVPRGV 237
Query: 440 LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA---P 610
L GPPG GKT L +A+A E A +++ P L GE+E NVR IF +AR+ A P
Sbjct: 238 LLAGPPGVGKTQLVRAVARETGAELLAVSAPALQGARPGETEENVRRIFKRARELASRRP 297
Query: 611 CVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 790
+LF DE+D++ RV+ Q+LT +DG+ + V ++G+TNRPD +DP
Sbjct: 298 TLLFLDEVDALCPRRGGPHQAPE---SRVVAQVLTLLDGIGEDREVVVVGSTNRPDALDP 354
Query: 791 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 970
A+ RPGR D+ + I P + R AIL+ K P++ VDL LA+MT G+ GADLT +C
Sbjct: 355 ALRRPGRFDREVVIGTPTLRQRKAILQVITSKMPISGQVDLNLLAEMTVGYVGADLTALC 414
Query: 971 QRACKLA 991
+ A A
Sbjct: 415 REAAMQA 421
>ref|XP_001787757.2| PREDICTED: Cell Division Cycle related family member (cdc-48.2)-like,
partial [Bos taurus].
Length = 786
Score = 249 bits (636), Expect = 8e-66
Identities = 127/263 (48%), Positives = 179/263 (68%), Gaps = 1/263 (0%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMK-LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 178
IG+P+A RL+ILQ + + L + +L Q+AN HG+VGADL ALC+EA L A+R+
Sbjct: 527 IGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEAGLHALRR-- 584
Query: 179 DLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 358
++ + D+++ + +T+ DF ++ PSA+RE V+VP V+W DIGGLE+VK
Sbjct: 585 -VLRRQPNLPDSKMAGLVKITLKDFLQGMNDIRPSAMREVAVDVPNVSWSDIGGLENVKL 643
Query: 359 ELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 538
+L++ V++P++HP+ F + G+ P KGVL YGPPGC KT++AKA+ANE NF++IKGPEL
Sbjct: 644 KLKQAVEWPLKHPESFTQMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPEL 703
Query: 539 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTE 718
+ + GESE VREIF KAR AP ++FFDELD++ DRV+ Q+LTE
Sbjct: 704 MNKYVGESERAVREIFRKARAVAPSIIFFDELDAL-AVERGSSSGAGNVADRVLAQLLTE 762
Query: 719 MDGMSTKKNVFIIGATNRPDIID 787
MDG+ KNV I+ ATNRPD ID
Sbjct: 763 MDGIEQLKNVTILAATNRPDRID 785
Score = 169 bits (429), Expect = 8e-42
Identities = 88/226 (38%), Positives = 143/226 (63%), Gaps = 4/226 (1%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+VT++ IGGL +E++E+++ P++ P+ F +G+ P +GVL YGPPG GKT++A+A+A
Sbjct: 355 KVTYDMIGGLNSQLKEIREIIELPLKQPELFKSYGIPPPRGVLLYGPPGTGKTMIARAVA 414
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A I GPE+++ ++GE+EA +R+IF +A P ++F DELD++
Sbjct: 415 NEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDAL---CPKREGA 471
Query: 674 XXXXXDRVINQILTEMDGMSTKKN---VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 844
RV+ +LT MDG+ ++ + V ++GATNRP +D A+ RPGR D+ I I +P+
Sbjct: 472 QNEVEKRVVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPN 531
Query: 845 EKSRVAILKANLRKSP-VAKDVDLEFLAKMTNGFSGADLTEICQRA 979
+ R+ IL+ LR+ P + + +L LA +G+ GADL +C A
Sbjct: 532 AQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEA 577
>ref|XP_002686698.1| PREDICTED: peroxisomal biogenesis factor 1 [Bos taurus].
Length = 1254
Score = 236 bits (603), Expect = 5e-62
Identities = 133/322 (41%), Positives = 186/322 (57%), Gaps = 6/322 (1%)
Frame = +2
Query: 11 PDATGRLEILQIHTKN-----MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 175
PD R EIL KN MK +DL+++A ET G V D L A + +
Sbjct: 739 PDQDQRCEILHAIIKNKLDCDMKRFTGLDLQRIAKETEGFVARDFTMLVDRAIHSHLSHQ 798
Query: 176 MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQ-VTWEDIGGLEDV 352
+ L +T DF+ AL P +LR + P+ + W+ IGGL DV
Sbjct: 799 -----------NVYTREELVLTTLDFQKALRGFTPVSLRNVNLHKPRDLGWDRIGGLHDV 847
Query: 353 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 532
++ L + +Q P ++P+ F + GVL YGPPG GKTLLA IA E NFIS+KGP
Sbjct: 848 RQILVDTIQLPAKYPELFANLPIRQRTGVLLYGPPGTGKTLLAGVIARESGMNFISVKGP 907
Query: 533 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQIL 712
ELL+ + G SE VR++F +A+ A PC+LFFDE +SI DRV+NQ+L
Sbjct: 908 ELLSKYIGASEQAVRDVFVRAQAAKPCILFFDEFESI---APRRGHDNTGVTDRVVNQLL 964
Query: 713 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP 892
T++DG+ + V+++ AT+RPD+IDPA+LRPGRLD+ +Y P PD+ SR+ IL P
Sbjct: 965 TQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQASRLEILNVLSESLP 1024
Query: 893 VAKDVDLEFLAKMTNGFSGADL 958
+A DVDL+ +A +T+ F+GADL
Sbjct: 1025 LADDVDLQHVASLTDSFTGADL 1046
Score = 52.4 bits (124), Expect = 2e-06
Identities = 28/63 (44%), Positives = 40/63 (63%)
Frame = +2
Query: 11 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 190
PD RLEIL + ++++ LADDVDL+ VA+ T GADL AL A L+A+ ++
Sbjct: 1007 PDQASRLEILNVLSESLPLADDVDLQHVASLTDSFTGADLKALLYGAQLEALHGRLLTGG 1066
Query: 191 LED 199
L+D
Sbjct: 1067 LQD 1069
>ref|NP_001179000.1| peroxisome biogenesis factor 1 [Bos taurus].
Length = 1281
Score = 235 bits (599), Expect = 1e-61
Identities = 133/322 (41%), Positives = 186/322 (57%), Gaps = 6/322 (1%)
Frame = +2
Query: 11 PDATGRLEILQIHTKN-----MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 175
PD R EIL KN MK +DL+++A ET G V D L A + +
Sbjct: 739 PDQDQRCEILHAIIKNKLDCDMKRFTGLDLQRIAKETEGFVARDFTMLVDRAIHSHLSHQ 798
Query: 176 MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQ-VTWEDIGGLEDV 352
+ L +T DF+ AL P +LR + P+ + W+ IGGL DV
Sbjct: 799 -----------NVYTREELVLTTLDFQKALRGFTPVSLRNVNLHKPRDLGWDRIGGLHDV 847
Query: 353 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 532
++ L + +Q P ++P+ F + GVL YGPPG GKTLLA IA E NFIS+KGP
Sbjct: 848 RQILVDTIQLPAKYPELFANLPIRQRTGVLLYGPPGTGKTLLAGVIAWESGMNFISVKGP 907
Query: 533 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQIL 712
ELL+ + G SE VR++F +A+ A PC+LFFDE +SI DRV+NQ+L
Sbjct: 908 ELLSKYIGASEQAVRDVFVRAQAAKPCILFFDEFESI---APRRGHDNTGVTDRVVNQLL 964
Query: 713 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP 892
T++DG+ + V+++ AT+RPD+IDPA+LRPGRLD+ +Y P PD+ SR+ IL P
Sbjct: 965 TQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQASRLEILNVLSESLP 1024
Query: 893 VAKDVDLEFLAKMTNGFSGADL 958
+A DVDL+ +A +T+ F+GADL
Sbjct: 1025 LADDVDLQHVASLTDSFTGADL 1046
Score = 52.4 bits (124), Expect = 2e-06
Identities = 28/63 (44%), Positives = 40/63 (63%)
Frame = +2
Query: 11 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 190
PD RLEIL + ++++ LADDVDL+ VA+ T GADL AL A L+A+ ++
Sbjct: 1007 PDQASRLEILNVLSESLPLADDVDLQHVASLTDSFTGADLKALLYGAQLEALHGRLLTGG 1066
Query: 191 LED 199
L+D
Sbjct: 1067 LQD 1069
>ref|NP_001179876.1| peroxisome assembly factor 2 [Bos taurus].
Length = 980
Score = 235 bits (599), Expect = 1e-61
Identities = 135/328 (41%), Positives = 196/328 (59%), Gaps = 6/328 (1%)
Frame = +2
Query: 26 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC---SEAALQAIRKKMDLIDLE 196
RL +L+ T ++ L +V+L Q+A G V DL AL S AA I+ L
Sbjct: 601 RLSVLRALTAHLPLGQEVNLAQLARRCAGFVVGDLFALLTHSSRAACTRIKNSGWAGGLS 660
Query: 197 DETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-VVEVPQVTWEDIGGLEDVKRELQEL 373
+E + +DF AL Q + + +P V+W D+GGL++VK+E+ E
Sbjct: 661 EEDEGELCAAGFPLLAEDFGQALEQLQAAHSQAIGAPRIPSVSWHDVGGLQEVKKEILET 720
Query: 374 VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 553
+Q P+EHP+ L G+ S G+L +GPPG GKTLLAKA+A EC F+S+KGPEL+ M+
Sbjct: 721 IQLPLEHPE-LLSLGLRRS-GLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYV 778
Query: 554 GESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMS 733
G+SE NVRE+F +AR AAPC++FFDELDS+ DRV++Q+L E+DG+
Sbjct: 779 GQSEENVREVFARARAAAPCIIFFDELDSL-APNRGRSGDSGGVMDRVVSQLLAELDGLH 837
Query: 734 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSRVAILKANLRKSPVAKDVD 910
+ ++VF+IGATNRPD++DPA+LRPGR D+L+++ + D S++ +L A RK + V
Sbjct: 838 STQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGVNEDRASQLRVLSAITRKFRLEPSVS 897
Query: 911 L-EFLAKMTNGFSGADLTEICQRACKLA 991
L + L +GADL +C A A
Sbjct: 898 LVDVLDHCPPQLTGADLYSLCSDAMTAA 925
Score = 54.7 bits (130), Expect = 4e-07
Identities = 43/191 (22%), Positives = 83/191 (43%)
Frame = +2
Query: 419 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 598
+T + VL GPPG GKT A + + + + L G E ++ F +AR
Sbjct: 460 LTGTGSVLLRGPPGSGKTTAVAAACSRLGLHLLKVPCSSLCADSSGAVETKLQAAFSRAR 519
Query: 599 QAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPD 778
+ P VL +D + + +L + D +++ + ++ T+R
Sbjct: 520 RCRPVVLLLTAVDLLGRDRDGLGEDARVV--ATLRHLLLDEDPLASCPPLMVVATTSRAQ 577
Query: 779 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADL 958
+ PA ++ +L +P+ E R+++L+A P+ ++V+L LA+ GF DL
Sbjct: 578 DL-PADVQTAFPHEL-EVPVLAEAQRLSVLRALTAHLPLGQEVNLAQLARRCAGFVVGDL 635
Query: 959 TEICQRACKLA 991
+ + + A
Sbjct: 636 FALLTHSSRAA 646
>ref|XP_002697291.1| PREDICTED: peroxisomal biogenesis factor 6 [Bos taurus].
Length = 980
Score = 235 bits (599), Expect = 1e-61
Identities = 135/328 (41%), Positives = 196/328 (59%), Gaps = 6/328 (1%)
Frame = +2
Query: 26 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC---SEAALQAIRKKMDLIDLE 196
RL +L+ T ++ L +V+L Q+A G V DL AL S AA I+ L
Sbjct: 601 RLSVLRALTAHLPLGQEVNLAQLARRCAGFVVGDLFALLTHSSRAACTRIKNSGWAGGLS 660
Query: 197 DETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-VVEVPQVTWEDIGGLEDVKRELQEL 373
+E + +DF AL Q + + +P V+W D+GGL++VK+E+ E
Sbjct: 661 EEDEGELCAAGFPLLAEDFGQALEQLQAAHSQAIGAPRIPSVSWHDVGGLQEVKKEILET 720
Query: 374 VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 553
+Q P+EHP+ L G+ S G+L +GPPG GKTLLAKA+A EC F+S+KGPEL+ M+
Sbjct: 721 IQLPLEHPE-LLSLGLRRS-GLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYV 778
Query: 554 GESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMS 733
G+SE NVRE+F +AR AAPC++FFDELDS+ DRV++Q+L E+DG+
Sbjct: 779 GQSEENVREVFARARAAAPCIIFFDELDSL-APNRGRSGDSGGVMDRVVSQLLAELDGLH 837
Query: 734 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSRVAILKANLRKSPVAKDVD 910
+ ++VF+IGATNRPD++DPA+LRPGR D+L+++ + D S++ +L A RK + V
Sbjct: 838 STQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGVNEDRASQLRVLSAITRKFRLEPSVS 897
Query: 911 L-EFLAKMTNGFSGADLTEICQRACKLA 991
L + L +GADL +C A A
Sbjct: 898 LVDVLDHCPPQLTGADLYSLCSDAMTAA 925
Score = 54.7 bits (130), Expect = 4e-07
Identities = 43/191 (22%), Positives = 83/191 (43%)
Frame = +2
Query: 419 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 598
+T + VL GPPG GKT A + + + + L G E ++ F +AR
Sbjct: 460 LTGTGSVLLRGPPGSGKTTAVAAACSRLGLHLLKVPCSSLCADSSGAVETKLQAAFSRAR 519
Query: 599 QAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPD 778
+ P VL +D + + +L + D +++ + ++ T+R
Sbjct: 520 RCRPVVLLLTAVDLLGRDRDGLGEDARVV--ATLRHLLLDEDPLASCPPLMVVATTSRAQ 577
Query: 779 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADL 958
+ PA ++ +L +P+ E R+++L+A P+ ++V+L LA+ GF DL
Sbjct: 578 DL-PADVQTAFPHEL-EVPVLAEAQRLSVLRALTAHLPLGQEVNLAQLARRCAGFVVGDL 635
Query: 959 TEICQRACKLA 991
+ + + A
Sbjct: 636 FALLTHSSRAA 646
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 92,987,639
Number of extensions: 2605436
Number of successful extensions: 8512
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 8395
Number of HSP's successfully gapped: 67
Length of query: 774
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 664
Effective length of database: 14,041,694
Effective search space: 9323684816
Effective search space used: 9323684816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002265
(2322 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866152.1| PREDICTED: similar to Transitional endoplasmic ... 755 0.0
Alignment gi|XP_866137.1| PREDICTED: similar to Transitional endoplasmic ... 755 0.0
Alignment gi|XP_866054.1| PREDICTED: similar to valosin-containing protei... 755 0.0
Alignment gi|XP_852626.1| PREDICTED: similar to valosin-containing protei... 755 0.0
Alignment gi|XP_866203.1| PREDICTED: similar to Transitional endoplasmic ... 749 0.0
Alignment gi|XP_538712.2| PREDICTED: similar to Transitional endoplasmic ... 749 0.0
Alignment gi|XP_866191.1| PREDICTED: similar to Transitional endoplasmic ... 746 0.0
Alignment gi|XP_866167.1| PREDICTED: similar to Transitional endoplasmic ... 726 0.0
Alignment gi|XP_866075.1| PREDICTED: similar to Transitional endoplasmic ... 643 0.0
Alignment gi|XP_540960.2| PREDICTED: similar to spermatogenesis associate... 315 2e-85
>ref|XP_866152.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 10 [Canis
familiaris].
Length = 762
Score = 755 bits (1950), Expect = 0.0
Identities = 388/438 (88%), Positives = 388/438 (88%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD
Sbjct: 325 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 384
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 361
LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE
Sbjct: 385 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 444
Query: 362 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 541
LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL
Sbjct: 445 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 504
Query: 542 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEM 721
TMWFGESEANVREIFDKARQAAPCVLFFDELDSI DRVINQILTEM
Sbjct: 505 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 564
Query: 722 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 901
DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK
Sbjct: 565 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 624
Query: 902 DVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPV 1081
DVDLEFLAKMTNGFSGADLTEICQRACKLA QTNPSAMEVEEDDPV
Sbjct: 625 DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 684
Query: 1082 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPXXXXXXXXXXXXXX 1261
PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFP
Sbjct: 685 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSG 744
Query: 1262 XXXXXXVYTEDNDDDLYG 1315
VYTEDNDDDLYG
Sbjct: 745 GGTGGSVYTEDNDDDLYG 762
Score = 162 bits (409), Expect = 2e-39
Identities = 81/185 (43%), Positives = 120/185 (64%)
Frame = +2
Query: 425 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA 604
P +G+L YGPPG GKTL+A+A+ANE A F I GPE+++ GESE+N+R+ F++A +
Sbjct: 193 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 252
Query: 605 APCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDII 784
AP ++F DELD+I R+++Q+LT MDG+ + +V ++ ATNRP+ I
Sbjct: 253 APAIIFIDELDAIAPKREKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 309
Query: 785 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 964
DPA+ R GR D+ + I +PD R+ IL+ + + +A DVDLE +A T+G GADL
Sbjct: 310 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA 369
Query: 965 ICQRA 979
+C A
Sbjct: 370 LCSEA 374
>ref|XP_866137.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 9 [Canis
familiaris].
Length = 787
Score = 755 bits (1950), Expect = 0.0
Identities = 388/438 (88%), Positives = 388/438 (88%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD
Sbjct: 350 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 409
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 361
LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE
Sbjct: 410 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 469
Query: 362 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 541
LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL
Sbjct: 470 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 529
Query: 542 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEM 721
TMWFGESEANVREIFDKARQAAPCVLFFDELDSI DRVINQILTEM
Sbjct: 530 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 589
Query: 722 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 901
DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK
Sbjct: 590 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 649
Query: 902 DVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPV 1081
DVDLEFLAKMTNGFSGADLTEICQRACKLA QTNPSAMEVEEDDPV
Sbjct: 650 DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 709
Query: 1082 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPXXXXXXXXXXXXXX 1261
PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFP
Sbjct: 710 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSG 769
Query: 1262 XXXXXXVYTEDNDDDLYG 1315
VYTEDNDDDLYG
Sbjct: 770 GGTGGSVYTEDNDDDLYG 787
Score = 165 bits (417), Expect = 2e-40
Identities = 86/222 (38%), Positives = 134/222 (60%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A F I GPE+++ GESE+N+R+ F++A + E++
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNT-----HGEVER----------- 303
Query: 674 XXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 853
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 304 ------RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 357
Query: 854 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
R+ IL+ + + +A DVDLE +A T+G GADL +C A
Sbjct: 358 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEA 399
>ref|XP_866054.1| PREDICTED: similar to valosin-containing protein isoform 4 [Canis
familiaris].
Length = 761
Score = 755 bits (1950), Expect = 0.0
Identities = 388/438 (88%), Positives = 388/438 (88%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD
Sbjct: 324 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 383
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 361
LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE
Sbjct: 384 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 443
Query: 362 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 541
LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL
Sbjct: 444 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 503
Query: 542 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEM 721
TMWFGESEANVREIFDKARQAAPCVLFFDELDSI DRVINQILTEM
Sbjct: 504 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 563
Query: 722 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 901
DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK
Sbjct: 564 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 623
Query: 902 DVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPV 1081
DVDLEFLAKMTNGFSGADLTEICQRACKLA QTNPSAMEVEEDDPV
Sbjct: 624 DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 683
Query: 1082 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPXXXXXXXXXXXXXX 1261
PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFP
Sbjct: 684 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSG 743
Query: 1262 XXXXXXVYTEDNDDDLYG 1315
VYTEDNDDDLYG
Sbjct: 744 GGTGGSVYTEDNDDDLYG 761
Score = 188 bits (477), Expect = 2e-47
Identities = 93/222 (41%), Positives = 142/222 (63%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 155 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 214
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+I
Sbjct: 215 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 274
Query: 674 XXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 853
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 275 VER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 331
Query: 854 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
R+ IL+ + + +A DVDLE +A T+G GADL +C A
Sbjct: 332 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEA 373
>ref|XP_852626.1| PREDICTED: similar to valosin-containing protein isoform 3 [Canis
familiaris].
Length = 806
Score = 755 bits (1950), Expect = 0.0
Identities = 388/438 (88%), Positives = 388/438 (88%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 361
LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488
Query: 362 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 541
LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL
Sbjct: 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548
Query: 542 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEM 721
TMWFGESEANVREIFDKARQAAPCVLFFDELDSI DRVINQILTEM
Sbjct: 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608
Query: 722 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 901
DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK
Sbjct: 609 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668
Query: 902 DVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPV 1081
DVDLEFLAKMTNGFSGADLTEICQRACKLA QTNPSAMEVEEDDPV
Sbjct: 669 DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 728
Query: 1082 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPXXXXXXXXXXXXXX 1261
PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFP
Sbjct: 729 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSG 788
Query: 1262 XXXXXXVYTEDNDDDLYG 1315
VYTEDNDDDLYG
Sbjct: 789 GGTGGSVYTEDNDDDLYG 806
Score = 188 bits (477), Expect = 2e-47
Identities = 93/222 (41%), Positives = 142/222 (63%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+I
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 674 XXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 853
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 320 VER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 854 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
R+ IL+ + + +A DVDLE +A T+G GADL +C A
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEA 418
>ref|XP_866203.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 13 [Canis
familiaris].
Length = 810
Score = 749 bits (1935), Expect = 0.0
Identities = 388/442 (87%), Positives = 388/442 (87%), Gaps = 4/442 (0%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 361
LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488
Query: 362 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 541
LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL
Sbjct: 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548
Query: 542 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEM 721
TMWFGESEANVREIFDKARQAAPCVLFFDELDSI DRVINQILTEM
Sbjct: 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608
Query: 722 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 901
DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK
Sbjct: 609 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668
Query: 902 DVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAM----EVEE 1069
DVDLEFLAKMTNGFSGADLTEICQRACKLA QTNPSAM EVEE
Sbjct: 669 DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMVIDSEVEE 728
Query: 1070 DDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPXXXXXXXXXX 1249
DDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFP
Sbjct: 729 DDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPS 788
Query: 1250 XXXXXXXXXXVYTEDNDDDLYG 1315
VYTEDNDDDLYG
Sbjct: 789 QGSGGGTGGSVYTEDNDDDLYG 810
Score = 188 bits (477), Expect = 2e-47
Identities = 93/222 (41%), Positives = 142/222 (63%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+I
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 674 XXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 853
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 320 VER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 854 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
R+ IL+ + + +A DVDLE +A T+G GADL +C A
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEA 418
>ref|XP_538712.2| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 1 [Canis
familiaris].
Length = 812
Score = 749 bits (1933), Expect = 0.0
Identities = 388/444 (87%), Positives = 388/444 (87%), Gaps = 6/444 (1%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 361
LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488
Query: 362 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 541
LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL
Sbjct: 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548
Query: 542 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEM 721
TMWFGESEANVREIFDKARQAAPCVLFFDELDSI DRVINQILTEM
Sbjct: 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608
Query: 722 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 901
DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK
Sbjct: 609 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668
Query: 902 ------DVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEV 1063
DVDLEFLAKMTNGFSGADLTEICQRACKLA QTNPSAMEV
Sbjct: 669 AGTRALDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEV 728
Query: 1064 EEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPXXXXXXXX 1243
EEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFP
Sbjct: 729 EEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAG 788
Query: 1244 XXXXXXXXXXXXVYTEDNDDDLYG 1315
VYTEDNDDDLYG
Sbjct: 789 PSQGSGGGTGGSVYTEDNDDDLYG 812
Score = 188 bits (477), Expect = 2e-47
Identities = 93/222 (41%), Positives = 142/222 (63%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+I
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 674 XXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 853
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 320 VER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 854 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
R+ IL+ + + +A DVDLE +A T+G GADL +C A
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEA 418
>ref|XP_866191.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 12 [Canis
familiaris].
Length = 819
Score = 746 bits (1926), Expect = 0.0
Identities = 388/451 (86%), Positives = 388/451 (86%), Gaps = 13/451 (2%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 361
LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488
Query: 362 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 541
LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL
Sbjct: 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548
Query: 542 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEM 721
TMWFGESEANVREIFDKARQAAPCVLFFDELDSI DRVINQILTEM
Sbjct: 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608
Query: 722 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 901
DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK
Sbjct: 609 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668
Query: 902 DVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAM-------- 1057
DVDLEFLAKMTNGFSGADLTEICQRACKLA QTNPSAM
Sbjct: 669 DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMVRHMLLEV 728
Query: 1058 -----EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPX 1222
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFP
Sbjct: 729 KPLGKEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPS 788
Query: 1223 XXXXXXXXXXXXXXXXXXXVYTEDNDDDLYG 1315
VYTEDNDDDLYG
Sbjct: 789 GNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG 819
Score = 188 bits (477), Expect = 2e-47
Identities = 93/222 (41%), Positives = 142/222 (63%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+I
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 674 XXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 853
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 320 VER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 854 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
R+ IL+ + + +A DVDLE +A T+G GADL +C A
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEA 418
>ref|XP_866167.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 11 [Canis
familiaris].
Length = 776
Score = 726 bits (1874), Expect = 0.0
Identities = 374/408 (91%), Positives = 374/408 (91%), Gaps = 4/408 (0%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 361
LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488
Query: 362 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 541
LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL
Sbjct: 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548
Query: 542 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEM 721
TMWFGESEANVREIFDKARQAAPCVLFFDELDSI DRVINQILTEM
Sbjct: 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608
Query: 722 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 901
DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK
Sbjct: 609 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668
Query: 902 DVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAM----EVEE 1069
DVDLEFLAKMTNGFSGADLTEICQRACKLA QTNPSAM EVEE
Sbjct: 669 DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMVKLEEVEE 728
Query: 1070 DDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFR 1213
DDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFR
Sbjct: 729 DDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFR 776
Score = 188 bits (477), Expect = 2e-47
Identities = 93/222 (41%), Positives = 142/222 (63%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+I
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 674 XXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 853
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 320 VER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 854 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
R+ IL+ + + +A DVDLE +A T+G GADL +C A
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEA 418
>ref|XP_866075.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 5 [Canis
familiaris].
Length = 759
Score = 643 bits (1658), Expect = 0.0
Identities = 335/385 (87%), Positives = 337/385 (87%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 361
LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488
Query: 362 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 541
LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL
Sbjct: 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548
Query: 542 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEM 721
TMWFGESEANVREIFDKARQAAPCVLFFDELDSI DRVINQILTEM
Sbjct: 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608
Query: 722 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 901
DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK
Sbjct: 609 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668
Query: 902 DVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPV 1081
DVDLEFLAKMTNGFSGADLTEICQRACKLA +
Sbjct: 669 DVDLEFLAKMTNGFSGADLTEICQRACKLA-----------------------------I 699
Query: 1082 PEIRRDHFEEAMRFARRSVSDNDIR 1156
E +HFEEAMRFARRSVSDNDIR
Sbjct: 700 RESIENHFEEAMRFARRSVSDNDIR 724
Score = 188 bits (477), Expect = 2e-47
Identities = 93/222 (41%), Positives = 142/222 (63%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+I
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 674 XXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 853
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 320 VER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 854 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
R+ IL+ + + +A DVDLE +A T+G GADL +C A
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEA 418
Score = 55.5 bits (132), Expect = 2e-07
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +3
Query: 1656 SICTSLNAAHALPSSPYPTWAGG*RAPVAGCLYR 1757
+ICTSL+A ALPSS YPTWA G RA VAGCLYR
Sbjct: 725 NICTSLSATQALPSSLYPTWAVGRRATVAGCLYR 758
>ref|XP_540960.2| PREDICTED: similar to spermatogenesis associated factor SPAF [Canis
familiaris].
Length = 893
Score = 315 bits (806), Expect = 2e-85
Identities = 164/393 (41%), Positives = 246/393 (62%), Gaps = 1/393 (0%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMK-LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 178
IG+P+A RL+ILQ + + L +V+L Q+AN HG+VGADL ALC+EA L A+R+
Sbjct: 521 IGVPNAADRLDILQKLLQRVPHLLTEVELLQLANSAHGYVGADLKALCNEAGLYALRR-- 578
Query: 179 DLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 358
+++ + D+++ + +T++DF ++ PSA+RE ++VP V+W DIGGLE++K
Sbjct: 579 -VLNKQPNLSDSKMAGLVKITLNDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKL 637
Query: 359 ELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 538
+L++ V++P++HP+ F++ G+ P KGVL YGPPGC KT++AKA+ANE NF++IKGPEL
Sbjct: 638 KLKQAVEWPLKHPESFIRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPEL 697
Query: 539 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTE 718
+ + GESE VREIF KAR +P ++FFDELD++ DRV+ Q+LTE
Sbjct: 698 MNKYVGESERAVREIFRKARAVSPSIIFFDELDAL-AIERGSSSGAGNVADRVLAQLLTE 756
Query: 719 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA 898
MDG+ K+V I+ ATNRPD ID A++RPGR+D++IY+PLPD +R IL P++
Sbjct: 757 MDGIEQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPIS 816
Query: 899 KDVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDP 1078
DV+L+ L T+ +SGA++ +C+ A LA +EED
Sbjct: 817 NDVNLDELIFQTDTYSGAEIIAVCREAALLA-----------------------LEEDIQ 853
Query: 1079 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 1177
I R HF A+ +S + R YE + +
Sbjct: 854 ANSITRRHFTRALSTVTPRISKSLRRFYEEYQE 886
Score = 166 bits (421), Expect = 7e-41
Identities = 87/226 (38%), Positives = 142/226 (62%), Gaps = 4/226 (1%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+VT++ IGGL + ++E+++ P++ P+ F +G+ P +GVL YGPPG GKT++A+A+A
Sbjct: 349 KVTYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPPPRGVLLYGPPGTGKTMIARAVA 408
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A I GPE+++ ++GE+EA +R+IF +A P ++F DELD++
Sbjct: 409 NEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDAL---CPKREGA 465
Query: 674 XXXXXDRVINQILTEMDGMSTKKN---VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 844
RV+ +LT MDG+ ++ + V ++GATNRP +D A+ RPGR D+ I I +P+
Sbjct: 466 QNEVEKRVVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPN 525
Query: 845 EKSRVAILKANLRKSP-VAKDVDLEFLAKMTNGFSGADLTEICQRA 979
R+ IL+ L++ P + +V+L LA +G+ GADL +C A
Sbjct: 526 AADRLDILQKLLQRVPHLLTEVELLQLANSAHGYVGADLKALCNEA 571
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 96,857,915
Number of extensions: 2673029
Number of successful extensions: 8808
Number of sequences better than 1.0e-05: 71
Number of HSP's gapped: 8640
Number of HSP's successfully gapped: 108
Length of query: 774
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 663
Effective length of database: 15,174,208
Effective search space: 10060499904
Effective search space used: 10060499904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002265
(2322 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo... 755 0.0
Alignment gi|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapi... 310 3e-84
Alignment gi|NP_001230076.1| nuclear valosin-containing protein-like isof... 285 1e-76
Alignment gi|NP_001230075.1| nuclear valosin-containing protein-like isof... 285 1e-76
Alignment gi|NP_996671.1| nuclear valosin-containing protein-like isoform... 285 1e-76
Alignment gi|NP_002524.2| nuclear valosin-containing protein-like isoform... 285 1e-76
Alignment gi|NP_076968.2| spermatogenesis-associated protein 5-like prote... 257 4e-68
Alignment gi|NP_000457.1| peroxisome biogenesis factor 1 [Homo sapiens]. 234 3e-61
Alignment gi|NP_000278.3| peroxisome biogenesis factor 6 [Homo sapiens]. 234 3e-61
Alignment gi|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Ho... 197 3e-50
>ref|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo sapiens].
Length = 806
Score = 755 bits (1950), Expect = 0.0
Identities = 388/438 (88%), Positives = 388/438 (88%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 361
LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488
Query: 362 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 541
LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL
Sbjct: 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548
Query: 542 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEM 721
TMWFGESEANVREIFDKARQAAPCVLFFDELDSI DRVINQILTEM
Sbjct: 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608
Query: 722 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 901
DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK
Sbjct: 609 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668
Query: 902 DVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPV 1081
DVDLEFLAKMTNGFSGADLTEICQRACKLA QTNPSAMEVEEDDPV
Sbjct: 669 DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 728
Query: 1082 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPXXXXXXXXXXXXXX 1261
PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFP
Sbjct: 729 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSG 788
Query: 1262 XXXXXXVYTEDNDDDLYG 1315
VYTEDNDDDLYG
Sbjct: 789 GGTGGSVYTEDNDDDLYG 806
Score = 188 bits (477), Expect = 2e-47
Identities = 93/222 (41%), Positives = 142/222 (63%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+I
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 674 XXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 853
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 320 VER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 854 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
R+ IL+ + + +A DVDLE +A T+G GADL +C A
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEA 418
>ref|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapiens].
Length = 893
Score = 310 bits (795), Expect = 3e-84
Identities = 163/393 (41%), Positives = 241/393 (61%), Gaps = 1/393 (0%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMK-LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 178
IG+P+A RL+ILQ + + L + +L Q+AN HG+VGADL LC+EA L A+R+
Sbjct: 521 IGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKVLCNEAGLCALRR-- 578
Query: 179 DLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 358
++ + D +V + +T+ DF A++ PSA+RE ++VP V+W DIGGLE +K
Sbjct: 579 -ILKKQPNLPDVKVAGLVKITLKDFLQAMNDIRPSAMREIAIDVPNVSWSDIGGLESIKL 637
Query: 359 ELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 538
+L++ V++P++HP+ F++ G+ P KGVL YGPPGC KT++AKA+ANE NF++IKGPEL
Sbjct: 638 KLEQAVEWPLKHPESFIRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPEL 697
Query: 539 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTE 718
+ + GESE VRE F KAR AP ++FFDELD++ DRV+ Q+LTE
Sbjct: 698 MNKYVGESERAVRETFRKARAVAPSIIFFDELDAL-AVERGSSLGAGNVADRVLAQLLTE 756
Query: 719 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA 898
MDG+ K+V I+ ATNRPD ID A++RPGR+D++IY+PLPD +R I K PV+
Sbjct: 757 MDGIEQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREIFKLQFHSMPVS 816
Query: 899 KDVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDP 1078
+VDL+ L T+ +SGA++ +C+ A LA +EED
Sbjct: 817 NEVDLDELILQTDAYSGAEIVAVCREAALLA-----------------------LEEDIQ 853
Query: 1079 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 1177
I + HF +A+ + ++ R YE + +
Sbjct: 854 ANLIMKRHFTQALSTVTPRIPESLRRFYEDYQE 886
Score = 164 bits (414), Expect = 4e-40
Identities = 86/226 (38%), Positives = 141/226 (62%), Gaps = 4/226 (1%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+VT++ IGGL + ++E+++ P++ P+ F +G+ +GVL YGPPG GKT++A+A+A
Sbjct: 349 KVTYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRGVLLYGPPGTGKTMIARAVA 408
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A I GPE+++ ++GE+EA +R+IF +A P ++F DELD++
Sbjct: 409 NEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSIIFIDELDAL---CPKREGA 465
Query: 674 XXXXXDRVINQILTEMDGMSTKKN---VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 844
RV+ +LT MDG+ ++ + V ++GATNRP +D A+ RPGR D+ I I +P+
Sbjct: 466 QNEVEKRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPN 525
Query: 845 EKSRVAILKANLRKSP-VAKDVDLEFLAKMTNGFSGADLTEICQRA 979
+ R+ IL+ LR+ P + + +L LA +G+ GADL +C A
Sbjct: 526 AQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKVLCNEA 571
>ref|NP_001230076.1| nuclear valosin-containing protein-like isoform 4 [Homo sapiens].
Length = 765
Score = 285 bits (729), Expect = 1e-76
Identities = 173/442 (39%), Positives = 239/442 (54%), Gaps = 46/442 (10%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAI----- 166
+GIPD R ILQ + ++L D +A+ T G VGADL ALC EAA+ A+
Sbjct: 341 LGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLM 400
Query: 167 ------RKKMDLIDL------------------------------EDETIDAEVMNSLAV 238
+K ++ DL + + + E M L +
Sbjct: 401 KLQEQQKKNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCI 460
Query: 239 TMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG 418
++DF ALS PSA RE V VP VTW DIG LED++ EL + PV +PD+F G
Sbjct: 461 ELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALG 520
Query: 419 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 598
+ GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GESE VR++F +A+
Sbjct: 521 LVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK 580
Query: 599 QAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPD 778
+APCV+FFDE+D++ RV+NQ+LTEMDG+ ++ VFI+ ATNRPD
Sbjct: 581 NSAPCVIFFDEVDALCPRRSDRETGASV---RVVNQLLTEMDGLEARQQVFIMAATNRPD 637
Query: 779 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKA---NLRKSPVAKDVDLEFLA--KMTNGF 943
IIDPAILRPGRLD+ +++ LP R+AILK N K P+ DV+LE +A + +
Sbjct: 638 IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCY 697
Query: 944 SGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPVPEIRRDHFEEAMRF 1123
+GADL+ + + A A + + + + ++ HFEEA +
Sbjct: 698 TGADLSALVREASICA--------------LRQEMARQKSGNEKGELKVSHKHFEEAFKK 743
Query: 1124 ARRSVSDNDIRKYEMFAQTLQQ 1189
R S+S D YE ++L +
Sbjct: 744 VRSSISKKDQIMYERLQESLSR 765
Score = 167 bits (424), Expect = 3e-41
Identities = 91/232 (39%), Positives = 138/232 (59%), Gaps = 3/232 (1%)
Frame = +2
Query: 305 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 484
++ V +ED+GG + +E+ +++ + + HP+ + G+ P +GVL +GPPGCGKTLLA
Sbjct: 167 QISNVKFEDVGGNDMTLKEVCKMLIH-MRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAH 225
Query: 485 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXX 664
AIA E + + PE+++ GESE +RE+F++A APC++F DE+D+I
Sbjct: 226 AIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVA 285
Query: 665 XXXXXXXXDRVINQILTEMD---GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 835
R++ Q+LT MD ++ V +IGATNRPD +DPA+ R GR D+ I +
Sbjct: 286 SKDMER---RIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLG 342
Query: 836 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 991
+PDE SR IL+ RK + + D LA +T GF GADL +C+ A A
Sbjct: 343 IPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCA 394
>ref|NP_001230075.1| nuclear valosin-containing protein-like isoform 3 [Homo sapiens].
Length = 667
Score = 285 bits (729), Expect = 1e-76
Identities = 173/442 (39%), Positives = 239/442 (54%), Gaps = 46/442 (10%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAI----- 166
+GIPD R ILQ + ++L D +A+ T G VGADL ALC EAA+ A+
Sbjct: 243 LGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLM 302
Query: 167 ------RKKMDLIDL------------------------------EDETIDAEVMNSLAV 238
+K ++ DL + + + E M L +
Sbjct: 303 KLQEQQKKNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCI 362
Query: 239 TMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG 418
++DF ALS PSA RE V VP VTW DIG LED++ EL + PV +PD+F G
Sbjct: 363 ELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALG 422
Query: 419 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 598
+ GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GESE VR++F +A+
Sbjct: 423 LVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK 482
Query: 599 QAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPD 778
+APCV+FFDE+D++ RV+NQ+LTEMDG+ ++ VFI+ ATNRPD
Sbjct: 483 NSAPCVIFFDEVDALCPRRSDRETGASV---RVVNQLLTEMDGLEARQQVFIMAATNRPD 539
Query: 779 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKA---NLRKSPVAKDVDLEFLA--KMTNGF 943
IIDPAILRPGRLD+ +++ LP R+AILK N K P+ DV+LE +A + +
Sbjct: 540 IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCY 599
Query: 944 SGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPVPEIRRDHFEEAMRF 1123
+GADL+ + + A A + + + + ++ HFEEA +
Sbjct: 600 TGADLSALVREASICA--------------LRQEMARQKSGNEKGELKVSHKHFEEAFKK 645
Query: 1124 ARRSVSDNDIRKYEMFAQTLQQ 1189
R S+S D YE ++L +
Sbjct: 646 VRSSISKKDQIMYERLQESLSR 667
Score = 154 bits (388), Expect = 5e-37
Identities = 92/259 (35%), Positives = 140/259 (54%), Gaps = 30/259 (11%)
Frame = +2
Query: 305 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 484
++ V +ED+GG + +E+ +++ + + HP+ + G+ P +GVL +GPPGCGKTLLA
Sbjct: 42 QISNVKFEDVGGNDMTLKEVCKMLIH-MRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAH 100
Query: 485 AIAN---------ECQANF------------------ISIKGPELLTMWFGESEANVREI 583
AIA C +F + + PE+++ GESE +RE+
Sbjct: 101 AIAGAECSGMITAHCSFDFSGSNDPPASASQELDLPILKVAAPEIVSGVSGESEQKLREL 160
Query: 584 FDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMST---KKNVFI 754
F++A APC++F DE+D+I R++ Q+LT MD ++ V +
Sbjct: 161 FEQAVSNAPCIIFIDEIDAITPKREVASKDMER---RIVAQLLTCMDDLNNVAATARVLV 217
Query: 755 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMT 934
IGATNRPD +DPA+ R GR D+ I + +PDE SR IL+ RK + + D LA +T
Sbjct: 218 IGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLT 277
Query: 935 NGFSGADLTEICQRACKLA 991
GF GADL +C+ A A
Sbjct: 278 PGFVGADLMALCREAAMCA 296
>ref|NP_996671.1| nuclear valosin-containing protein-like isoform 2 [Homo sapiens].
Length = 750
Score = 285 bits (729), Expect = 1e-76
Identities = 173/442 (39%), Positives = 239/442 (54%), Gaps = 46/442 (10%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAI----- 166
+GIPD R ILQ + ++L D +A+ T G VGADL ALC EAA+ A+
Sbjct: 326 LGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLM 385
Query: 167 ------RKKMDLIDL------------------------------EDETIDAEVMNSLAV 238
+K ++ DL + + + E M L +
Sbjct: 386 KLQEQQKKNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCI 445
Query: 239 TMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG 418
++DF ALS PSA RE V VP VTW DIG LED++ EL + PV +PD+F G
Sbjct: 446 ELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALG 505
Query: 419 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 598
+ GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GESE VR++F +A+
Sbjct: 506 LVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK 565
Query: 599 QAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPD 778
+APCV+FFDE+D++ RV+NQ+LTEMDG+ ++ VFI+ ATNRPD
Sbjct: 566 NSAPCVIFFDEVDALCPRRSDRETGASV---RVVNQLLTEMDGLEARQQVFIMAATNRPD 622
Query: 779 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKA---NLRKSPVAKDVDLEFLA--KMTNGF 943
IIDPAILRPGRLD+ +++ LP R+AILK N K P+ DV+LE +A + +
Sbjct: 623 IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCY 682
Query: 944 SGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPVPEIRRDHFEEAMRF 1123
+GADL+ + + A A + + + + ++ HFEEA +
Sbjct: 683 TGADLSALVREASICA--------------LRQEMARQKSGNEKGELKVSHKHFEEAFKK 728
Query: 1124 ARRSVSDNDIRKYEMFAQTLQQ 1189
R S+S D YE ++L +
Sbjct: 729 VRSSISKKDQIMYERLQESLSR 750
Score = 167 bits (424), Expect = 3e-41
Identities = 91/232 (39%), Positives = 138/232 (59%), Gaps = 3/232 (1%)
Frame = +2
Query: 305 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 484
++ V +ED+GG + +E+ +++ + + HP+ + G+ P +GVL +GPPGCGKTLLA
Sbjct: 152 QISNVKFEDVGGNDMTLKEVCKMLIH-MRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAH 210
Query: 485 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXX 664
AIA E + + PE+++ GESE +RE+F++A APC++F DE+D+I
Sbjct: 211 AIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVA 270
Query: 665 XXXXXXXXDRVINQILTEMD---GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 835
R++ Q+LT MD ++ V +IGATNRPD +DPA+ R GR D+ I +
Sbjct: 271 SKDMER---RIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLG 327
Query: 836 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 991
+PDE SR IL+ RK + + D LA +T GF GADL +C+ A A
Sbjct: 328 IPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCA 379
>ref|NP_002524.2| nuclear valosin-containing protein-like isoform 1 [Homo sapiens].
Length = 856
Score = 285 bits (729), Expect = 1e-76
Identities = 173/442 (39%), Positives = 239/442 (54%), Gaps = 46/442 (10%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAI----- 166
+GIPD R ILQ + ++L D +A+ T G VGADL ALC EAA+ A+
Sbjct: 432 LGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLM 491
Query: 167 ------RKKMDLIDL------------------------------EDETIDAEVMNSLAV 238
+K ++ DL + + + E M L +
Sbjct: 492 KLQEQQKKNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCI 551
Query: 239 TMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG 418
++DF ALS PSA RE V VP VTW DIG LED++ EL + PV +PD+F G
Sbjct: 552 ELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALG 611
Query: 419 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 598
+ GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GESE VR++F +A+
Sbjct: 612 LVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK 671
Query: 599 QAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPD 778
+APCV+FFDE+D++ RV+NQ+LTEMDG+ ++ VFI+ ATNRPD
Sbjct: 672 NSAPCVIFFDEVDALCPRRSDRETGASV---RVVNQLLTEMDGLEARQQVFIMAATNRPD 728
Query: 779 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKA---NLRKSPVAKDVDLEFLA--KMTNGF 943
IIDPAILRPGRLD+ +++ LP R+AILK N K P+ DV+LE +A + +
Sbjct: 729 IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCY 788
Query: 944 SGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPVPEIRRDHFEEAMRF 1123
+GADL+ + + A A + + + + ++ HFEEA +
Sbjct: 789 TGADLSALVREASICA--------------LRQEMARQKSGNEKGELKVSHKHFEEAFKK 834
Query: 1124 ARRSVSDNDIRKYEMFAQTLQQ 1189
R S+S D YE ++L +
Sbjct: 835 VRSSISKKDQIMYERLQESLSR 856
Score = 167 bits (424), Expect = 3e-41
Identities = 91/232 (39%), Positives = 138/232 (59%), Gaps = 3/232 (1%)
Frame = +2
Query: 305 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 484
++ V +ED+GG + +E+ +++ + + HP+ + G+ P +GVL +GPPGCGKTLLA
Sbjct: 258 QISNVKFEDVGGNDMTLKEVCKMLIH-MRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAH 316
Query: 485 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXX 664
AIA E + + PE+++ GESE +RE+F++A APC++F DE+D+I
Sbjct: 317 AIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVA 376
Query: 665 XXXXXXXXDRVINQILTEMD---GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 835
R++ Q+LT MD ++ V +IGATNRPD +DPA+ R GR D+ I +
Sbjct: 377 SKDMER---RIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLG 433
Query: 836 LPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 991
+PDE SR IL+ RK + + D LA +T GF GADL +C+ A A
Sbjct: 434 IPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCA 485
>ref|NP_076968.2| spermatogenesis-associated protein 5-like protein 1 [Homo sapiens].
Length = 753
Score = 257 bits (656), Expect = 4e-68
Identities = 150/409 (36%), Positives = 224/409 (54%), Gaps = 21/409 (5%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IG P R EILQ+ T M ++ VDL +A T G+VGADL ALC EAA+ A+
Sbjct: 366 IGTPTLKQRKEILQVITSKMPISSHVDLGLLAEMTVGYVGADLTALCREAAMHALLHS-- 423
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETV--VEVPQVTWEDIGGLEDVK 355
++ D V++ + DF A PS+ R + +++ V WE+IGGLEDVK
Sbjct: 424 -----EKNQDNPVIDEI-----DFLEAFKNIQPSSFRSVIGLMDIKPVDWEEIGGLEDVK 473
Query: 356 RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 535
+L++ +++P++ P +F++ G+T KGVL YGPPGC KT L +A+A C +F+S+ G +
Sbjct: 474 LKLKQSIEWPLKFPWEFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCHCSFVSVSGAD 533
Query: 536 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILT 715
L + + G+SE + +IF +AR + P +LF DE+DSI +RV++ +L
Sbjct: 534 LFSPFVGDSEKVLSQIFRQARASTPAILFLDEIDSI-LGARSASKTGCDVQERVLSVLLN 592
Query: 716 EMDGMSTK-------------------KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 838
E+DG+ K ++V II ATNRPD++D A+LRPGRLD++IYIP
Sbjct: 593 ELDGVGLKTIERRGSKSSQQEFQEVFNRSVMIIAATNRPDVLDTALLRPGRLDKIIYIPP 652
Query: 839 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXX 1018
PD K R++ILK + P+ DV LE LA T FSGADL +C A LA
Sbjct: 653 PDHKGRLSILKVCTKTMPIGPDVSLENLAAETCFFSGADLRNLCTEAALLALQ------- 705
Query: 1019 XXXXXXQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYE 1165
E ++++HF ++++ + S+S D+ YE
Sbjct: 706 ---------------ENGLDATTVKQEHFLKSLKTVKPSLSCKDLALYE 739
Score = 167 bits (424), Expect = 3e-41
Identities = 89/219 (40%), Positives = 128/219 (58%), Gaps = 3/219 (1%)
Frame = +2
Query: 332 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 511
+GGL + L+EL++ P+ +P G+ +GVL GPPG GKT L +A+A E A
Sbjct: 202 LGGLSEAADSLRELLRLPLRYPRALTALGLAVPRGVLLAGPPGVGKTQLVRAVAREAGAE 261
Query: 512 FISIKGPELLTMWFGESEANVREIFDKARQAA---PCVLFFDELDSIXXXXXXXXXXXXX 682
+++ P L GE+E NVR +F +AR+ A P +LF DE+D++
Sbjct: 262 LLAVSAPALQGSRPGETEENVRRVFQRARELASRGPSLLFLDEMDALCPQRGSRAPE--- 318
Query: 683 XXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 862
RV+ Q+LT +DG S + V ++GATNRPD +DPA+ RPGR D+ + I P K R
Sbjct: 319 --SRVVAQVLTLLDGASGDREVVVVGATNRPDALDPALRRPGRFDREVVIGTPTLKQRKE 376
Query: 863 ILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
IL+ K P++ VDL LA+MT G+ GADLT +C+ A
Sbjct: 377 ILQVITSKMPISSHVDLGLLAEMTVGYVGADLTALCREA 415
>ref|NP_000457.1| peroxisome biogenesis factor 1 [Homo sapiens].
Length = 1283
Score = 234 bits (597), Expect = 3e-61
Identities = 133/329 (40%), Positives = 189/329 (57%), Gaps = 6/329 (1%)
Frame = +2
Query: 11 PDATGRLEILQIHTKNMKLAD-----DVDLEQVANETHGHVGADLAALCSEAALQAIRKK 175
P+ R EIL KN D D+DL+ VA ET G V D L A + ++
Sbjct: 740 PNQEQRCEILCNVIKNKLDCDINKFTDLDLQHVAKETGGFVARDFTVLVDRAIHSRLSRQ 799
Query: 176 MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQ-VTWEDIGGLEDV 352
L +T DF+ AL P++LR + P+ + W+ IGGL +V
Sbjct: 800 -----------SISTREKLVLTTLDFQKALRGFLPASLRSVNLHKPRDLGWDKIGGLHEV 848
Query: 353 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 532
++ L + +Q P ++P+ F + G+L YGPPG GKTLLA IA E + NFIS+KGP
Sbjct: 849 RQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVIARESRMNFISVKGP 908
Query: 533 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQIL 712
ELL+ + G SE VR+IF +A+ A PC+LFFDE +SI DRV+NQ+L
Sbjct: 909 ELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESI---APRRGHDNTGVTDRVVNQLL 965
Query: 713 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP 892
T++DG+ + V+++ AT+RPD+IDPA+LRPGRLD+ +Y P PD+ SR+ IL P
Sbjct: 966 TQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSDSLP 1025
Query: 893 VAKDVDLEFLAKMTNGFSGADLTEICQRA 979
+A DVDL+ +A +T+ F+GADL + A
Sbjct: 1026 LADDVDLQHVASVTDSFTGADLKALLYNA 1054
Score = 52.4 bits (124), Expect = 2e-06
Identities = 30/75 (40%), Positives = 44/75 (58%)
Frame = +2
Query: 11 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 190
PD RLEIL + + ++ LADDVDL+ VA+ T GADL AL A L+A+ +
Sbjct: 1008 PDQVSRLEILNVLSDSLPLADDVDLQHVASVTDSFTGADLKALLYNAQLEALHGMLLSSG 1067
Query: 191 LEDETIDAEVMNSLA 235
L+D + ++ SL+
Sbjct: 1068 LQDGSSSSDSDLSLS 1082
>ref|NP_000278.3| peroxisome biogenesis factor 6 [Homo sapiens].
Length = 980
Score = 234 bits (596), Expect = 3e-61
Identities = 136/328 (41%), Positives = 195/328 (59%), Gaps = 6/328 (1%)
Frame = +2
Query: 26 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC---SEAALQAIRKKMDLIDLE 196
RL IL+ T ++ L +V+L Q+A G V DL AL S AA I+ L
Sbjct: 601 RLSILRALTAHLPLGQEVNLAQLARRCAGFVVGDLYALLTHSSRAACTRIKNSGLAGGLT 660
Query: 197 DETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-VVEVPQVTWEDIGGLEDVKRELQEL 373
+E + +DF AL Q + + ++P V+W D+GGL++VK+E+ E
Sbjct: 661 EEDEGELCAAGFPLLAEDFGQALEQLQTAHSQAVGAPKIPSVSWHDVGGLQEVKKEILET 720
Query: 374 VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 553
+Q P+EHP+ L G+ S G+L +GPPG GKTLLAKA+A EC F+S+KGPEL+ M+
Sbjct: 721 IQLPLEHPE-LLSLGLRRS-GLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYV 778
Query: 554 GESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMS 733
G+SE NVRE+F +AR AAPC++FFDELDS+ DRV++Q+L E+DG+
Sbjct: 779 GQSEENVREVFARARAAAPCIIFFDELDSL-APSRGRSGDSGGVMDRVVSQLLAELDGLH 837
Query: 734 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL-PDEKSRVAILKANLRKSPVAKDVD 910
+ ++VF+IGATNRPD++DPA+LRPGR D+L+++ D S++ +L A RK + V
Sbjct: 838 STQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVS 897
Query: 911 L-EFLAKMTNGFSGADLTEICQRACKLA 991
L L +GADL +C A A
Sbjct: 898 LVNVLDCCPPQLTGADLYSLCSDAMTAA 925
Score = 63.5 bits (153), Expect = 8e-10
Identities = 47/191 (24%), Positives = 85/191 (44%)
Frame = +2
Query: 419 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 598
+T + VL GPPGCGKT + A + + + + L G E ++ IF +AR
Sbjct: 460 LTGTSSVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVETKLQAIFSRAR 519
Query: 599 QAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPD 778
+ P VL +D + V+ +L D +++ + ++ T+R
Sbjct: 520 RCRPAVLLLTAVDLLGRDRDGLGEDARVM--AVLRHLLLNEDPLNSCPPLMVVATTSRAQ 577
Query: 779 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADL 958
+ PA ++ +L +P E R++IL+A P+ ++V+L LA+ GF DL
Sbjct: 578 DL-PADVQTAFPHEL-EVPALSEGQRLSILRALTAHLPLGQEVNLAQLARRCAGFVVGDL 635
Query: 959 TEICQRACKLA 991
+ + + A
Sbjct: 636 YALLTHSSRAA 646
>ref|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Homo sapiens].
Length = 433
Score = 197 bits (502), Expect = 3e-50
Identities = 97/271 (35%), Positives = 157/271 (57%), Gaps = 5/271 (1%)
Frame = +2
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVV-----EVPQVTWEDIGGLE 346
++DL D+ ++ + V +D ++ + P + TV E P VT+ D+GG +
Sbjct: 122 VVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCK 181
Query: 347 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 526
+ +L+E+V+ P+ HP++F+ G+ P KGVL +GPPG GKTL A+A+AN A FI +
Sbjct: 182 EQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 241
Query: 527 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQ 706
G EL+ + GE VRE+F+ AR C++FFDE+D+I R + +
Sbjct: 242 GSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLE 301
Query: 707 ILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 886
++ ++DG + N+ ++ ATNRPD +DPA++RPGRLD+ I LPD + R I K + R
Sbjct: 302 LINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARS 361
Query: 887 SPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
V +D+ E LA++ +GA++ +C A
Sbjct: 362 MSVERDIRFELLARLCPNSTGAEIRSVCTEA 392
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 95,315,785
Number of extensions: 2651710
Number of successful extensions: 8745
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 8636
Number of HSP's successfully gapped: 61
Length of query: 774
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 664
Effective length of database: 14,671,124
Effective search space: 9741626336
Effective search space used: 9741626336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002265
(2322 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus ... 755 0.0
Alignment gi|NP_001156983.1| spermatogenesis-associated protein 5 isoform... 308 1e-83
Alignment gi|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 ... 308 1e-83
Alignment gi|NP_080447.1| nuclear valosin-containing protein-like [Mus mu... 286 4e-77
Alignment gi|NP_663463.1| peroxisome assembly factor 2 [Mus musculus]. 239 9e-63
Alignment gi|XP_001481383.2| PREDICTED: LOW QUALITY PROTEIN: spermatogene... 238 2e-62
Alignment gi|NP_082053.1| peroxisome biogenesis factor 1 [Mus musculus]. 230 3e-60
Alignment gi|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus]. 197 2e-50
Alignment gi|NP_080235.2| 26S protease regulatory subunit 10B [Mus muscul... 196 5e-50
Alignment gi|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus]. 192 1e-48
>ref|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus musculus].
Length = 806
Score = 755 bits (1950), Expect = 0.0
Identities = 388/438 (88%), Positives = 388/438 (88%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 361
LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488
Query: 362 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 541
LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL
Sbjct: 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548
Query: 542 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEM 721
TMWFGESEANVREIFDKARQAAPCVLFFDELDSI DRVINQILTEM
Sbjct: 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608
Query: 722 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 901
DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK
Sbjct: 609 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668
Query: 902 DVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPV 1081
DVDLEFLAKMTNGFSGADLTEICQRACKLA QTNPSAMEVEEDDPV
Sbjct: 669 DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 728
Query: 1082 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPXXXXXXXXXXXXXX 1261
PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFP
Sbjct: 729 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSG 788
Query: 1262 XXXXXXVYTEDNDDDLYG 1315
VYTEDNDDDLYG
Sbjct: 789 GGTGGSVYTEDNDDDLYG 806
Score = 188 bits (477), Expect = 2e-47
Identities = 93/222 (41%), Positives = 142/222 (63%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+I
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 674 XXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 853
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 320 VER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 854 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
R+ IL+ + + +A DVDLE +A T+G GADL +C A
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEA 418
>ref|NP_001156983.1| spermatogenesis-associated protein 5 isoform 1 [Mus musculus].
Length = 893
Score = 308 bits (789), Expect = 1e-83
Identities = 162/393 (41%), Positives = 242/393 (61%), Gaps = 1/393 (0%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMK-LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 178
IGIP+A RL+ILQ + + L +L ++AN HG+VGADL ALC+EA L A+R+
Sbjct: 521 IGIPNAQDRLDILQKLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRR-- 578
Query: 179 DLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 358
++ + D++V + +T++DF ++ PSA+RE ++VP V+W DIGGLE++K
Sbjct: 579 -VLRKQPNLPDSKVAGMVKITLNDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKL 637
Query: 359 ELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 538
+L++ V++P++HP F + G+ P KGVL YGPPGC KT++AKA+ANE NF++IKGPEL
Sbjct: 638 KLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPEL 697
Query: 539 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTE 718
+ + GESE VREIF KAR AP ++FFDELD++ DRV+ Q+LTE
Sbjct: 698 MNKYVGESERAVREIFRKARAVAPSIIFFDELDAL-AVERGSSSGAGNVADRVLAQLLTE 756
Query: 719 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA 898
MDG+ KNV ++ ATNRPD ID A++RPGR+D++IY+PLPD +R IL P++
Sbjct: 757 MDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPIS 816
Query: 899 KDVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDP 1078
+VDL+ L T+ +SGA++ +C+ A LA +EE+
Sbjct: 817 NEVDLDELVLQTDTYSGAEIIAVCKEAALLA-----------------------LEENIK 853
Query: 1079 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 1177
I + HF +A+ + ++ R YE + +
Sbjct: 854 ADCIMKRHFTQALSIVTPRIPESLRRFYEDYQE 886
Score = 162 bits (410), Expect = 1e-39
Identities = 85/226 (37%), Positives = 140/226 (61%), Gaps = 4/226 (1%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+VT++ IGGL + ++E+++ P++ P+ F +G+ +G+L YGPPG GKT++A+A+A
Sbjct: 349 KVTYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVA 408
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A I GPE+++ ++GE+EA +R+IF +A P ++F DELD++
Sbjct: 409 NEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDAL---CPKREGA 465
Query: 674 XXXXXDRVINQILTEMDGMSTKKN---VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 844
RV+ +LT MDG+ ++ + V ++GATNRP +D A+ RPGR D+ I I +P+
Sbjct: 466 QSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPN 525
Query: 845 EKSRVAILKANLRKSP-VAKDVDLEFLAKMTNGFSGADLTEICQRA 979
+ R+ IL+ LR+ P + +L LA +G+ GADL +C A
Sbjct: 526 AQDRLDILQKLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEA 571
>ref|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 [Mus musculus].
Length = 892
Score = 308 bits (789), Expect = 1e-83
Identities = 162/393 (41%), Positives = 242/393 (61%), Gaps = 1/393 (0%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMK-LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 178
IGIP+A RL+ILQ + + L +L ++AN HG+VGADL ALC+EA L A+R+
Sbjct: 520 IGIPNAQDRLDILQKLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRR-- 577
Query: 179 DLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 358
++ + D++V + +T++DF ++ PSA+RE ++VP V+W DIGGLE++K
Sbjct: 578 -VLRKQPNLPDSKVAGMVKITLNDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKL 636
Query: 359 ELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 538
+L++ V++P++HP F + G+ P KGVL YGPPGC KT++AKA+ANE NF++IKGPEL
Sbjct: 637 KLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPEL 696
Query: 539 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTE 718
+ + GESE VREIF KAR AP ++FFDELD++ DRV+ Q+LTE
Sbjct: 697 MNKYVGESERAVREIFRKARAVAPSIIFFDELDAL-AVERGSSSGAGNVADRVLAQLLTE 755
Query: 719 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA 898
MDG+ KNV ++ ATNRPD ID A++RPGR+D++IY+PLPD +R IL P++
Sbjct: 756 MDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPIS 815
Query: 899 KDVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDP 1078
+VDL+ L T+ +SGA++ +C+ A LA +EE+
Sbjct: 816 NEVDLDELVLQTDTYSGAEIIAVCKEAALLA-----------------------LEENIK 852
Query: 1079 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 1177
I + HF +A+ + ++ R YE + +
Sbjct: 853 ADCIMKRHFTQALSIVTPRIPESLRRFYEDYQE 885
Score = 162 bits (410), Expect = 1e-39
Identities = 85/226 (37%), Positives = 140/226 (61%), Gaps = 4/226 (1%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+VT++ IGGL + ++E+++ P++ P+ F +G+ +G+L YGPPG GKT++A+A+A
Sbjct: 348 KVTYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVA 407
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A I GPE+++ ++GE+EA +R+IF +A P ++F DELD++
Sbjct: 408 NEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDAL---CPKREGA 464
Query: 674 XXXXXDRVINQILTEMDGMSTKKN---VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 844
RV+ +LT MDG+ ++ + V ++GATNRP +D A+ RPGR D+ I I +P+
Sbjct: 465 QSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPN 524
Query: 845 EKSRVAILKANLRKSP-VAKDVDLEFLAKMTNGFSGADLTEICQRA 979
+ R+ IL+ LR+ P + +L LA +G+ GADL +C A
Sbjct: 525 AQDRLDILQKLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEA 570
>ref|NP_080447.1| nuclear valosin-containing protein-like [Mus musculus].
Length = 855
Score = 286 bits (733), Expect = 4e-77
Identities = 176/442 (39%), Positives = 242/442 (54%), Gaps = 46/442 (10%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAI----- 166
+GIPD R ILQ + ++L + + +A+ T G VGADL ALC EAA+ A+
Sbjct: 431 LGIPDEAARERILQTLCRKLRLPETFNFCHLAHLTPGFVGADLMALCREAAMCAVNRVLM 490
Query: 167 ------RKKMDLIDLEDE------------------------------TIDAEVMNSLAV 238
+KK ++ L E + E M L +
Sbjct: 491 KQQAQQKKKPEIEGLPSEGDQEERLGAEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCI 550
Query: 239 TMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG 418
++DF AL++ PSA RE V VP VTW DIG LED++ EL + PV +PD+F G
Sbjct: 551 ELNDFIVALAEVQPSAKREGFVTVPNVTWADIGALEDIRDELIMAILAPVRNPDQFRTLG 610
Query: 419 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 598
+ G+L GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GESE VR++F +A+
Sbjct: 611 LGTPAGILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK 670
Query: 599 QAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPD 778
+APCV+FFDE+D++ RV+NQ+LTEMDG+ T++ VFI+ ATNRPD
Sbjct: 671 NSAPCVIFFDEVDALCPRRSDRETGASV---RVVNQLLTEMDGLETRQQVFILAATNRPD 727
Query: 779 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKA---NLRKSPVAKDVDLEFLAK--MTNGF 943
IIDPAILRPGRLD+ +++ LP RVAILK N K P+ +DV+LE +A N +
Sbjct: 728 IIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIANDLRCNCY 787
Query: 944 SGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPVPEIRRDHFEEAMRF 1123
+GADLT + + A A + A E+ ++ HFE+A +
Sbjct: 788 TGADLTALVREASLCA-------LRQEITAQKNGVGAGEL-------KVSHKHFEDAFKK 833
Query: 1124 ARRSVSDNDIRKYEMFAQTLQQ 1189
+ S+S D YE ++L Q
Sbjct: 834 VKPSISIKDQVMYEALQRSLSQ 855
Score = 171 bits (432), Expect = 3e-42
Identities = 95/247 (38%), Positives = 145/247 (58%), Gaps = 3/247 (1%)
Frame = +2
Query: 260 ALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGV 439
AL Q A R T +++ V +ED+GG + +E+ +++ + + HP+ + G+ P +GV
Sbjct: 243 ALLQKKAKA-RSTELQISNVKFEDVGGNDATLKEVCKMLIH-MRHPEVYQHLGVVPPRGV 300
Query: 440 LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL 619
L +GPPGCGKTLLA AIA E + + PE+++ GESE +RE+FD+A APC++
Sbjct: 301 LLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCIV 360
Query: 620 FFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMD---GMSTKKNVFIIGATNRPDIIDP 790
F DE+D+I R++ Q+LT MD ++ V +IGATNRPD +DP
Sbjct: 361 FIDEIDAITPKREVASKDMER---RIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDP 417
Query: 791 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 970
A+ R GR D+ + + +PDE +R IL+ RK + + + LA +T GF GADL +C
Sbjct: 418 ALRRAGRFDREVCLGIPDEAARERILQTLCRKLRLPETFNFCHLAHLTPGFVGADLMALC 477
Query: 971 QRACKLA 991
+ A A
Sbjct: 478 REAAMCA 484
>ref|NP_663463.1| peroxisome assembly factor 2 [Mus musculus].
Length = 981
Score = 239 bits (609), Expect = 9e-63
Identities = 137/328 (41%), Positives = 197/328 (60%), Gaps = 6/328 (1%)
Frame = +2
Query: 26 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE---AALQAIRKKMDLIDLE 196
RL ILQ T ++ L +V+L Q+A G V DL AL + AA IR L
Sbjct: 602 RLSILQALTAHLPLGQEVNLPQLARRCAGFVVGDLYALLTHTCRAACTRIRASGSAGGLS 661
Query: 197 DETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-VVEVPQVTWEDIGGLEDVKRELQEL 373
+E + + +DF AL Q + + +P V+W D+GGL+DVK+E+ E
Sbjct: 662 EEDEGDLCVAGFPLLAEDFGQALDQLQTAHSQAVGAPRIPSVSWHDVGGLQDVKKEILET 721
Query: 374 VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 553
+Q P+EHP+ L G+ S G+L +GPPG GKTLLAKA+A EC F+S+KGPEL+ M+
Sbjct: 722 IQLPLEHPE-LLSLGLRRS-GLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYV 779
Query: 554 GESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMS 733
G+SE NVRE+F +AR AAPC++FFDELDS+ DRV++Q+L E+DG+
Sbjct: 780 GQSEENVREVFARARAAAPCIIFFDELDSL-APSRGRSGDSGGVMDRVVSQLLAELDGLH 838
Query: 734 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK-SRVAILKANLRKSPVAKDVD 910
+ ++VF+IGATNRPD++DPA+LRPGR D+L+++ +++ S++ +L A RK + V
Sbjct: 839 STQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLRVLSAITRKFKLEASVS 898
Query: 911 L-EFLAKMTNGFSGADLTEICQRACKLA 991
L L +GADL +C A A
Sbjct: 899 LANVLDCCPPQLTGADLYSLCSDAMMTA 926
Score = 58.2 bits (139), Expect = 3e-08
Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 8/228 (3%)
Frame = +2
Query: 323 WEDIG--GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 496
W+ + GLE + EL +++ P P L +T + VL GPPG GKT A +
Sbjct: 431 WDSLSPPGLEALVNELCAILK-PHLQPGGTL---LTGTSCVLLQGPPGSGKTTAVTAACS 486
Query: 497 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXX 676
+ + + L E ++ F +AR+ P VL +D +
Sbjct: 487 RLGLHLLKVPCSSLCADSSRAVETKLQATFSRARRCRPAVLLLTAVDLLGRDRDGLGEDA 546
Query: 677 XXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDII--DPAILRPGRLDQLIYIPLPDEK 850
+ +L + D +S + ++ T+R + D P L+ +P+ E
Sbjct: 547 RVA--ATLRHLLLDEDALSRCPPLMVVATTSRVQDLPTDVQTAFPHELE----VPVLSEA 600
Query: 851 SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGAD----LTEICQRAC 982
R++IL+A P+ ++V+L LA+ GF D LT C+ AC
Sbjct: 601 QRLSILQALTAHLPLGQEVNLPQLARRCAGFVVGDLYALLTHTCRAAC 648
>ref|XP_001481383.2| PREDICTED: LOW QUALITY PROTEIN: spermatogenesis associated 5-like 1
[Mus musculus].
Length = 756
Score = 238 bits (607), Expect = 2e-62
Identities = 131/345 (37%), Positives = 200/345 (57%), Gaps = 21/345 (6%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IG P R ILQ+ T M ++ +DL +A T G+VGADL ALC EAA+ A+ K
Sbjct: 361 IGTPTLKQREAILQVITSKMPISSHIDLGLLAEMTVGYVGADLTALCREAAMCALLK--- 417
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET--VVEVPQVTWEDIGGLEDVK 355
+ + +S + DF A + PS+ R + ++++ V WE IGGLEDVK
Sbjct: 418 ---------NEKNQDSPKIEETDFLEAFKKIQPSSFRSSTGLMDIKPVGWEQIGGLEDVK 468
Query: 356 RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 535
+L++ V++P++ P +F + G+T KG+L YGPPGC KT L +A+A C +F+S+ G +
Sbjct: 469 LKLKQCVEWPLKFPQEFARMGLTQPKGLLLYGPPGCAKTTLVRALATGCHCSFVSVCGAD 528
Query: 536 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILT 715
L + + G+SE + ++F +AR P ++F DE+DS+ +RV++ +L
Sbjct: 529 LFSPFVGDSEKVLSQVFRQARANTPALVFLDEIDSV-LGSRSVGTSGCDARERVLSVLLN 587
Query: 716 EMDGMSTK-------------------KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 838
E+DG+ + ++V I+ ATNRPD++D A+LRPGRLD++IY+P
Sbjct: 588 ELDGVGVRTVERRGSKASQQECQEILSRSVMIVVATNRPDVLDDALLRPGRLDKIIYVPP 647
Query: 839 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 973
PD++ R++ILK PV DV LE LA T FSGADL +C+
Sbjct: 648 PDQEGRLSILKVCTNNMPVGPDVSLENLAAETCFFSGADLRNLCK 692
Score = 164 bits (414), Expect = 4e-40
Identities = 88/223 (39%), Positives = 129/223 (57%), Gaps = 3/223 (1%)
Frame = +2
Query: 332 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 511
+GGL + L+EL++ P+ +P G+ +GVL GPPG GKT L +A+A E A
Sbjct: 195 LGGLSETADSLRELLRLPLRYPLALAALGLAVPRGVLLAGPPGVGKTQLVRAVARETGAE 254
Query: 512 FISIKGPELLTMWFGESEANVREIFDKARQAA---PCVLFFDELDSIXXXXXXXXXXXXX 682
+++ P L GE+E NVR IF +A++ A P +LF DE+D++
Sbjct: 255 LLAVSAPALQGSRPGETEENVRRIFQRAQELASRGPSLLFLDEVDALCPRRGGPHRAPE- 313
Query: 683 XXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 862
RV+ Q+LT +DG+ + ++GATNRPD +DPA+ RPGR D+ + I P K R A
Sbjct: 314 --SRVVAQVLTLLDGIHRDREFVVVGATNRPDELDPALRRPGRFDREVVIGTPTLKQREA 371
Query: 863 ILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 991
IL+ K P++ +DL LA+MT G+ GADLT +C+ A A
Sbjct: 372 ILQVITSKMPISSHIDLGLLAEMTVGYVGADLTALCREAAMCA 414
Score = 51.6 bits (122), Expect = 3e-06
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Frame = +2
Query: 11 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK--MDL 184
PD GRL IL++ T NM + DV LE +A ET GADL LC E +L ++++K + +
Sbjct: 648 PDQEGRLSILKVCTNNMPVGPDVSLENLAAETCFFSGADLRNLCKEVSLFSLKEKGALRI 707
Query: 185 IDLEDETIDAEVMNSLAV-TMDDFRWA 262
+ L T + E L V D RW+
Sbjct: 708 LVLAAITPEPEPPRRLEVQDQDRKRWS 734
>ref|NP_082053.1| peroxisome biogenesis factor 1 [Mus musculus].
Length = 1244
Score = 230 bits (587), Expect = 3e-60
Identities = 128/329 (38%), Positives = 189/329 (57%), Gaps = 6/329 (1%)
Frame = +2
Query: 11 PDATGRLEILQIHTKNMKLAD-----DVDLEQVANETHGHVGADLAALCSEAALQAIRKK 175
P+ R EIL KN D D+DL+ +A +T V D L A ++ ++
Sbjct: 701 PNPEQRCEILHSVVKNKLGCDISNFPDLDLQCIAKDTEAFVARDFTVLVDRAIHSSLSRQ 760
Query: 176 MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQ-VTWEDIGGLEDV 352
+ L +T DF+ AL P++LR + P+ + W+ IGGL +V
Sbjct: 761 -----------HSSSREDLTLTTSDFQKALRGFLPASLRNVNLHKPRDLGWDKIGGLHEV 809
Query: 353 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 532
++ L + +Q P ++P+ F + G+L YGPPG GKTLLA +A E NFISIKGP
Sbjct: 810 RQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVVARESGMNFISIKGP 869
Query: 533 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQIL 712
ELL+ + G SE VR++F +A+ A PC+LFFDE +SI DRV+NQ+L
Sbjct: 870 ELLSKYIGASEQAVRDVFIRAQAAKPCILFFDEFESI---APRRGHDNTGVTDRVVNQLL 926
Query: 713 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP 892
T++DG+ + V+++ AT+RPD+IDPA+LRPGRLD+ +Y P PD+ SR+ IL +
Sbjct: 927 TQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKSLA 986
Query: 893 VAKDVDLEFLAKMTNGFSGADLTEICQRA 979
+A DVDL+ +A +T+ F+GADL + A
Sbjct: 987 LADDVDLQHVASVTDSFTGADLKALLYNA 1015
Score = 54.3 bits (129), Expect = 4e-07
Identities = 27/56 (48%), Positives = 38/56 (67%)
Frame = +2
Query: 11 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 178
PD RLEIL + +K++ LADDVDL+ VA+ T GADL AL A L+A++ ++
Sbjct: 969 PDQVSRLEILTVLSKSLALADDVDLQHVASVTDSFTGADLKALLYNAQLEALQGRL 1024
>ref|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus].
Length = 475
Score = 197 bits (502), Expect = 2e-50
Identities = 97/271 (35%), Positives = 157/271 (57%), Gaps = 5/271 (1%)
Frame = +2
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVV-----EVPQVTWEDIGGLE 346
++DL D+ ++ + V +D ++ + P + TV E P VT+ D+GG +
Sbjct: 164 VVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCK 223
Query: 347 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 526
+ +L+E+V+ P+ HP++F+ G+ P KGVL +GPPG GKTL A+A+AN A FI +
Sbjct: 224 EQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 283
Query: 527 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQ 706
G EL+ + GE VRE+F+ AR C++FFDE+D+I R + +
Sbjct: 284 GSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLE 343
Query: 707 ILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 886
++ ++DG + N+ ++ ATNRPD +DPA++RPGRLD+ I LPD + R I K + R
Sbjct: 344 LINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARS 403
Query: 887 SPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
V +D+ E LA++ +GA++ +C A
Sbjct: 404 MSVERDIRFELLARLCPNSTGAEIRSVCTEA 434
>ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus].
Length = 389
Score = 196 bits (499), Expect = 5e-50
Identities = 102/273 (37%), Positives = 165/273 (60%), Gaps = 2/273 (0%)
Frame = +2
Query: 167 RKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLE 346
R+++D L+ T A M +L + R+ + +P + + V++ +IGGL
Sbjct: 84 RRQLDKSKLKPGTRVALDMTTLTI----MRYLPREVDPLVYNMSHEDPGNVSYSEIGGLS 139
Query: 347 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 526
+ REL+E+++ P+ +P+ F + G+ P KG L YGPPG GKTLLA+A+A++ NF+ +
Sbjct: 140 EQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVV 199
Query: 527 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQ 706
++ + GES +RE+F+ AR PC++F DE+D+I R + +
Sbjct: 200 SSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 259
Query: 707 ILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 886
+L +MDG T V +I ATNRPD +DPA+LRPGRLD+ I+I LP+E++R+ ILK +
Sbjct: 260 LLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK--IHA 317
Query: 887 SPVAK--DVDLEFLAKMTNGFSGADLTEICQRA 979
P+ K ++D E + K+++GF+GADL +C A
Sbjct: 318 GPITKHGEIDYEAIVKLSDGFNGADLRNVCTEA 350
>ref|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus].
Length = 406
Score = 192 bits (488), Expect = 1e-48
Identities = 107/303 (35%), Positives = 173/303 (57%), Gaps = 6/303 (1%)
Frame = +2
Query: 89 QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDA-EVMNSLAVTMDDFRWAL 265
Q+ E +VG + A+ + L + + + D+ ID +V + V + + + L
Sbjct: 64 QLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTL 123
Query: 266 SQSNPSALRETVV-----EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPS 430
+ P+ + V +VP T+E IGGL+ +E++E+++ PV+HP+ F G+
Sbjct: 124 HKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP 183
Query: 431 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAP 610
KGVL YGPPG GKTLLA+A+A+ FI + G EL+ + GE VRE+F AR+ AP
Sbjct: 184 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAP 243
Query: 611 CVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 790
++F DE+DSI R + ++L ++DG KN+ +I ATNR DI+D
Sbjct: 244 SIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDS 303
Query: 791 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 970
A+LRPGR+D+ I P P+E++R+ ILK + RK + + ++L +A++ G SGA++ +C
Sbjct: 304 ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 363
Query: 971 QRA 979
A
Sbjct: 364 TEA 366
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 80,753,627
Number of extensions: 2222887
Number of successful extensions: 7275
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 7176
Number of HSP's successfully gapped: 48
Length of query: 774
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 665
Effective length of database: 12,343,635
Effective search space: 8208517275
Effective search space used: 8208517275
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002265
(2322 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus ... 754 0.0
Alignment gi|NP_001171384.1| spermatogenesis-associated protein 5 [Sus sc... 306 3e-83
Alignment gi|NP_001171382.1| spermatogenesis-associated protein 5-like pr... 259 6e-69
Alignment gi|XP_003357485.1| PREDICTED: LOW QUALITY PROTEIN: peroxisome b... 236 5e-62
Alignment gi|NP_001103896.1| peroxisome biogenesis factor 6 [Sus scrofa]. 234 2e-61
Alignment gi|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7... 197 2e-50
Alignment gi|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7... 197 2e-50
Alignment gi|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 1... 196 4e-50
Alignment gi|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa]. 192 7e-49
Alignment gi|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4... 191 2e-48
>ref|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus scrofa].
Length = 806
Score = 754 bits (1947), Expect = 0.0
Identities = 387/438 (88%), Positives = 388/438 (88%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 361
LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488
Query: 362 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 541
LQ+LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL
Sbjct: 489 LQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548
Query: 542 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEM 721
TMWFGESEANVREIFDKARQAAPCVLFFDELDSI DRVINQILTEM
Sbjct: 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608
Query: 722 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 901
DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK
Sbjct: 609 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK 668
Query: 902 DVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDPV 1081
DVDLEFLAKMTNGFSGADLTEICQRACKLA QTNPSAMEVEEDDPV
Sbjct: 669 DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 728
Query: 1082 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPXXXXXXXXXXXXXX 1261
PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFP
Sbjct: 729 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSG 788
Query: 1262 XXXXXXVYTEDNDDDLYG 1315
VYTEDNDDDLYG
Sbjct: 789 GGTGGSVYTEDNDDDLYG 806
Score = 188 bits (477), Expect = 1e-47
Identities = 93/222 (41%), Positives = 142/222 (63%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+I
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 319
Query: 674 XXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 853
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 320 VER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 854 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
R+ IL+ + + +A DVDLE +A T+G GADL +C A
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEA 418
>ref|NP_001171384.1| spermatogenesis-associated protein 5 [Sus scrofa].
Length = 887
Score = 306 bits (784), Expect = 3e-83
Identities = 162/393 (41%), Positives = 241/393 (61%), Gaps = 1/393 (0%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMK-LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 178
IG+P+A RL+ILQ + + L + +L Q+AN HG+VGADL ALC+EA L A+R+
Sbjct: 515 IGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEAGLYALRR-- 572
Query: 179 DLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 358
++ + D++V + +T+ DF ++ PSA+RE ++VP V+W DIGGLE++K
Sbjct: 573 -VLRKQPNLPDSKVAGLVKITLKDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKL 631
Query: 359 ELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 538
+L++ V++P++HP+ F + G+ P KGVL YGPPGC KT++AKA+ANE NF++IKGPEL
Sbjct: 632 KLKQAVEWPLKHPESFTQMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPEL 691
Query: 539 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTE 718
+ + GESE VREIF KAR AP ++FFDELD++ DRV+ Q+LT
Sbjct: 692 MNKYVGESERAVREIFRKARAVAPSIIFFDELDAL-AVERGSSSGAGNVADRVLAQLLTX 750
Query: 719 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA 898
MDG+ K+V I+ ATNRPD ID A++RPGR+D++IY+PLPD +R I P++
Sbjct: 751 MDGIEQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREIFNLQFHSMPIS 810
Query: 899 KDVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXXXXXXXXQTNPSAMEVEEDDP 1078
K+VDL L T+ +SGA++ +C+ A LA +EED
Sbjct: 811 KEVDLNELVLQTDTYSGAEIIAVCREAALLA-----------------------LEEDIQ 847
Query: 1079 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 1177
I + HF +A+ + ++ R YE + +
Sbjct: 848 ANCIMKRHFTQALSTVTPRLPESLRRFYEDYQE 880
Score = 170 bits (431), Expect = 3e-42
Identities = 88/226 (38%), Positives = 144/226 (63%), Gaps = 4/226 (1%)
Frame = +2
Query: 314 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 493
+VT++ IGGL +E++E+++ P++ P+ F +G++P +GVL YGPPG GKT++A+A+A
Sbjct: 343 KVTYDMIGGLNSQLKEIREIIELPLKQPELFKSYGISPPRGVLLYGPPGTGKTMIARAVA 402
Query: 494 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXX 673
NE A I GPE+++ ++GE+EA +R+IF +A P ++F DELD++
Sbjct: 403 NEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDAL---CPKREGA 459
Query: 674 XXXXXDRVINQILTEMDGMSTKKN---VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 844
RV+ +LT MDG+ ++ + V ++GATNRP +D A+ RPGR D+ I I +P+
Sbjct: 460 QNEVEKRVVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPN 519
Query: 845 EKSRVAILKANLRKSP-VAKDVDLEFLAKMTNGFSGADLTEICQRA 979
+ R+ IL+ LR+ P + + +L LA +G+ GADL +C A
Sbjct: 520 AQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEA 565
>ref|NP_001171382.1| spermatogenesis-associated protein 5-like protein 1 [Sus scrofa].
Length = 755
Score = 259 bits (661), Expect = 6e-69
Identities = 153/421 (36%), Positives = 228/421 (54%), Gaps = 21/421 (4%)
Frame = +2
Query: 2 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 181
IG P R ILQ+ T M ++ VDL +A T G+VGADL ALC EAA+ A+ +
Sbjct: 368 IGTPTLGQRKAILQVITSKMPISSQVDLSLLAEMTVGYVGADLTALCREAAMHAL---LH 424
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETV--VEVPQVTWEDIGGLEDVK 355
+D + E+ DF A + PS+ R + ++V +TWE IGGLED K
Sbjct: 425 SGKNQDNPLIDEI---------DFLEAFKKIQPSSFRSVIGLMDVKPITWEQIGGLEDAK 475
Query: 356 RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 535
R+L++ +++P++ P +F++ G+T KGVL YGPPGC KT L +A+A C +F+S+ G +
Sbjct: 476 RKLKQSIEWPLKFPREFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCHCSFVSVSGAD 535
Query: 536 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILT 715
L + + G+SE + ++F +AR P V+F DE+DSI +RV++ +L
Sbjct: 536 LFSPFVGDSEKILSQVFQQARANTPAVVFLDEIDSI-LGSRSISKTGCNVQERVLSVLLN 594
Query: 716 EMDGMSTK-------------------KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 838
E+DG+ K NV I+ ATNRPD++D A+LRPGRLD++IYIP
Sbjct: 595 ELDGVGLKTIERRGSKSDQHEFQEVFNSNVMIVAATNRPDVLDDALLRPGRLDKIIYIPP 654
Query: 839 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAXXXXXXXXX 1018
PDEK R++IL+ + PV DV LE LA T FSGADL +C+ A LA
Sbjct: 655 PDEKGRLSILRVCTKNMPVGPDVSLENLAAETCLFSGADLGNLCKEAALLALQ------- 707
Query: 1019 XXXXXXQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRG 1198
E ++++HF ++++ + S+S D+ Y + L Q +G
Sbjct: 708 ---------------ENGLEATTVKQEHFLKSLKTVKPSLSHKDLALY----KNLFQKQG 748
Query: 1199 F 1201
F
Sbjct: 749 F 749
Score = 168 bits (425), Expect = 1e-41
Identities = 93/237 (39%), Positives = 136/237 (57%), Gaps = 3/237 (1%)
Frame = +2
Query: 278 PSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPP 457
P + E EVP +GGL + L+EL++ P+ +P F G+ +GVL GPP
Sbjct: 190 PPSESEPPPEVP------LGGLAEAADSLRELLRLPLLYPRSFASLGLAVPRGVLLAGPP 243
Query: 458 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA---PCVLFFD 628
G GKT L +A+A E A +++ P L GE+E NVR +F +A++ A P +LF D
Sbjct: 244 GVGKTQLVRAVAREAGAELLAVSAPALQGARPGETEENVRRVFQRAQELAGRRPTLLFLD 303
Query: 629 ELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPG 808
E+D++ RV+ Q+LT +DG+S + V ++G+TNRPD +DPA+ RPG
Sbjct: 304 EVDALCPRRGGPHQAPE---SRVVAQVLTLLDGISGDREVVVVGSTNRPDALDPALRRPG 360
Query: 809 RLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
R D+ + I P R AIL+ K P++ VDL LA+MT G+ GADLT +C+ A
Sbjct: 361 RFDREVVIGTPTLGQRKAILQVITSKMPISSQVDLSLLAEMTVGYVGADLTALCREA 417
>ref|XP_003357485.1| PREDICTED: LOW QUALITY PROTEIN: peroxisome biogenesis factor 1-like
[Sus scrofa].
Length = 1282
Score = 236 bits (601), Expect = 5e-62
Identities = 132/329 (40%), Positives = 188/329 (57%), Gaps = 6/329 (1%)
Frame = +2
Query: 11 PDATGRLEILQIHTKN-----MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 175
PD R EIL KN M D+DL+++A ET G V D L A + +
Sbjct: 740 PDQEQRCEILHNAIKNKLDCDMNSFTDLDLKRIAKETEGFVARDFIVLVDRAIHSRLSNQ 799
Query: 176 MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQ-VTWEDIGGLEDV 352
L +T DF+ AL P++LR + P+ + W+ IGGL +V
Sbjct: 800 -----------SVSTREELVLTTLDFQKALQGFVPASLRNVNLHKPRDLGWDHIGGLREV 848
Query: 353 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 532
++ L + +Q P ++P+ F + GVL YGPPG GKTLLA +A E FIS+KGP
Sbjct: 849 RQILMDTIQLPAKYPELFANLPIRQRTGVLLYGPPGTGKTLLAGVVARESGMXFISVKGP 908
Query: 533 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQIL 712
ELL+ + G SE VR+IF +A+ A PC+LFFDE +SI DRV+NQ+L
Sbjct: 909 ELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESI---APRRGHDNTGVTDRVVNQLL 965
Query: 713 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP 892
T++DG+ + V+++ AT+RPD+IDPA+LRPGRLD+ +Y P PD+ SR+ IL P
Sbjct: 966 TQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSASLP 1025
Query: 893 VAKDVDLEFLAKMTNGFSGADLTEICQRA 979
+A+DVDL+ +A +T+ F+GADL + A
Sbjct: 1026 LAEDVDLQHVASLTDSFTGADLKALLYNA 1054
Score = 51.6 bits (122), Expect = 2e-06
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +2
Query: 11 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 190
PD RLEIL + + ++ LA+DVDL+ VA+ T GADL AL A L+A+ ++
Sbjct: 1008 PDQVSRLEILNVLSASLPLAEDVDLQHVASLTDSFTGADLKALLYNAQLEALHGRLLSCG 1067
Query: 191 LED 199
L+D
Sbjct: 1068 LQD 1070
>ref|NP_001103896.1| peroxisome biogenesis factor 6 [Sus scrofa].
Length = 969
Score = 234 bits (596), Expect = 2e-61
Identities = 138/329 (41%), Positives = 198/329 (60%), Gaps = 7/329 (2%)
Frame = +2
Query: 26 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC---SEAALQAIRKKMDLIDLE 196
RL ILQ T ++ L +V+L Q+A G V DL AL S AA I+ L
Sbjct: 590 RLSILQALTAHLPLGQEVNLAQLARRCAGFVVGDLYALLTHSSRAACTRIKNSGWAGGLS 649
Query: 197 DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETV--VEVPQVTWEDIGGLEDVKRELQE 370
+E + +D AL Q SA + V ++P V+W D+GGL++VK+E+ E
Sbjct: 650 EEDEGELCAAGFPLLAEDLGQALEQLQ-SAHSQAVGAPKIPSVSWHDVGGLQEVKKEILE 708
Query: 371 LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 550
+Q P+EHP+ L G+ S G+L +GPPG GKTLLAKA+A EC F+S+KGPEL+ M+
Sbjct: 709 TIQLPLEHPE-LLSLGLRRS-GLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMY 766
Query: 551 FGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGM 730
G+SE NVRE+F +AR AAPC++FFDELDS+ DRV++Q+L E+DG+
Sbjct: 767 VGQSEENVREVFARARAAAPCIIFFDELDSL-APSRGRSGDSGGVMDRVVSQLLAELDGL 825
Query: 731 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK-SRVAILKANLRKSPVAKDV 907
+ ++VF+IGATNRPD++DPA+LRPGR D+L+++ +++ S++ +L A RK + V
Sbjct: 826 HSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLRVLSAITRKFRLEPSV 885
Query: 908 DL-EFLAKMTNGFSGADLTEICQRACKLA 991
L L +GADL +C A A
Sbjct: 886 SLVAVLDHCPPQLTGADLYSLCADAMTAA 914
Score = 55.5 bits (132), Expect = 1e-07
Identities = 44/191 (23%), Positives = 82/191 (42%)
Frame = +2
Query: 419 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 598
+T VL GPPG GKT A + + + L G E ++ F +AR
Sbjct: 449 LTAPGSVLLRGPPGSGKTTAVTAACGRLGLHLLKVPCSSLCADSSGAVETKLQAAFSRAR 508
Query: 599 QAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPD 778
+ P VL +D + + ++L + D +++ + ++ T+R
Sbjct: 509 RCRPVVLLLTAVDLLGRDRDGLGEDARVV--ATLRRLLLDEDPLTSHPPLMVVATTSRAQ 566
Query: 779 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADL 958
+ PA ++ +L +P+ E R++IL+A P+ ++V+L LA+ GF DL
Sbjct: 567 DL-PADVQTAFPHEL-EVPVLSEGQRLSILQALTAHLPLGQEVNLAQLARRCAGFVVGDL 624
Query: 959 TEICQRACKLA 991
+ + + A
Sbjct: 625 YALLTHSSRAA 635
>ref|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
Length = 480
Score = 197 bits (502), Expect = 2e-50
Identities = 97/271 (35%), Positives = 157/271 (57%), Gaps = 5/271 (1%)
Frame = +2
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVV-----EVPQVTWEDIGGLE 346
++DL D+ ++ + V +D ++ + P + TV E P VT+ D+GG +
Sbjct: 169 VVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCK 228
Query: 347 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 526
+ +L+E+V+ P+ HP++F+ G+ P KGVL +GPPG GKTL A+A+AN A FI +
Sbjct: 229 EQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 288
Query: 527 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQ 706
G EL+ + GE VRE+F+ AR C++FFDE+D+I R + +
Sbjct: 289 GSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLE 348
Query: 707 ILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 886
++ ++DG + N+ ++ ATNRPD +DPA++RPGRLD+ I LPD + R I K + R
Sbjct: 349 LINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARS 408
Query: 887 SPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
V +D+ E LA++ +GA++ +C A
Sbjct: 409 MSVERDIRFELLARLCPNSTGAEIRSVCTEA 439
>ref|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
Length = 433
Score = 197 bits (502), Expect = 2e-50
Identities = 97/271 (35%), Positives = 157/271 (57%), Gaps = 5/271 (1%)
Frame = +2
Query: 182 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVV-----EVPQVTWEDIGGLE 346
++DL D+ ++ + V +D ++ + P + TV E P VT+ D+GG +
Sbjct: 122 VVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCK 181
Query: 347 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 526
+ +L+E+V+ P+ HP++F+ G+ P KGVL +GPPG GKTL A+A+AN A FI +
Sbjct: 182 EQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 241
Query: 527 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQ 706
G EL+ + GE VRE+F+ AR C++FFDE+D+I R + +
Sbjct: 242 GSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLE 301
Query: 707 ILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 886
++ ++DG + N+ ++ ATNRPD +DPA++RPGRLD+ I LPD + R I K + R
Sbjct: 302 LINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARS 361
Query: 887 SPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
V +D+ E LA++ +GA++ +C A
Sbjct: 362 MSVERDIRFELLARLCPNSTGAEIRSVCTEA 392
>ref|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa].
Length = 403
Score = 196 bits (499), Expect = 4e-50
Identities = 102/273 (37%), Positives = 165/273 (60%), Gaps = 2/273 (0%)
Frame = +2
Query: 167 RKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLE 346
R+++D L+ T A M +L + R+ + +P + + V++ +IGGL
Sbjct: 98 RRQLDKSKLKPGTRVALDMTTLTI----MRYLPREVDPLVYNMSHEDPGNVSYSEIGGLS 153
Query: 347 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 526
+ REL+E+++ P+ +P+ F + G+ P KG L YGPPG GKTLLA+A+A++ NF+ +
Sbjct: 154 EQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVV 213
Query: 527 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIXXXXXXXXXXXXXXXDRVINQ 706
++ + GES +RE+F+ AR PC++F DE+D+I R + +
Sbjct: 214 SSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLME 273
Query: 707 ILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 886
+L +MDG T V +I ATNRPD +DPA+LRPGRLD+ I+I LP+E++R+ ILK +
Sbjct: 274 LLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILK--IHA 331
Query: 887 SPVAK--DVDLEFLAKMTNGFSGADLTEICQRA 979
P+ K ++D E + K+++GF+GADL +C A
Sbjct: 332 GPITKHGEIDYEAIVKLSDGFNGADLRNVCTEA 364
>ref|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa].
Length = 406
Score = 192 bits (488), Expect = 7e-49
Identities = 107/303 (35%), Positives = 173/303 (57%), Gaps = 6/303 (1%)
Frame = +2
Query: 89 QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDA-EVMNSLAVTMDDFRWAL 265
Q+ E +VG + A+ + L + + + D+ ID +V + V + + + L
Sbjct: 64 QLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTL 123
Query: 266 SQSNPSALRETVV-----EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPS 430
+ P+ + V +VP T+E IGGL+ +E++E+++ PV+HP+ F G+
Sbjct: 124 HKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP 183
Query: 431 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAP 610
KGVL YGPPG GKTLLA+A+A+ FI + G EL+ + GE VRE+F AR+ AP
Sbjct: 184 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAP 243
Query: 611 CVLFFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 790
++F DE+DSI R + ++L ++DG KN+ +I ATNR DI+D
Sbjct: 244 SIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDS 303
Query: 791 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 970
A+LRPGR+D+ I P P+E++R+ ILK + RK + + ++L +A++ G SGA++ +C
Sbjct: 304 ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 363
Query: 971 QRA 979
A
Sbjct: 364 TEA 366
>ref|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4 isoform 2 [Sus
scrofa].
Length = 367
Score = 191 bits (484), Expect = 2e-48
Identities = 106/304 (34%), Positives = 174/304 (57%), Gaps = 1/304 (0%)
Frame = +2
Query: 83 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI-DAEVMNSLAVTMDDFRW 259
LE++ ++ H V + + + L + K DL++ + + +V + V MDD
Sbjct: 39 LEEIIDDNHAIVSTSVGSEHYVSILSFVDK--DLLEPGCSVLLNHKVHAVIGVLMDD--- 93
Query: 260 ALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGV 439
++P V + PQ T+ DIGGL++ +E++E V+ P+ HP+ + + G+ P KGV
Sbjct: 94 ----TDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGV 149
Query: 440 LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL 619
+ YGPPG GKTLLAKA+AN+ A F+ + G EL+ + G+ VRE+F A + AP ++
Sbjct: 150 ILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIV 209
Query: 620 FFDELDSIXXXXXXXXXXXXXXXDRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAIL 799
F DE+D+I R + ++L ++DG ++ +V +I ATNR + +DPA++
Sbjct: 210 FIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALI 269
Query: 800 RPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 979
RPGR+D+ I PLPDEK++ I + + + +A DV L+ L + SGAD+ IC A
Sbjct: 270 RPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEA 329
Query: 980 CKLA 991
+A
Sbjct: 330 GLMA 333
Score = 52.0 bits (123), Expect = 1e-06
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +2
Query: 8 IPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 187
+PD + I QIHT M LADDV L+ + GAD+ A+C+EA L A+R++ +
Sbjct: 282 LPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKV 341
Query: 188 DLED 199
ED
Sbjct: 342 TNED 345
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 59,910,272
Number of extensions: 1675598
Number of successful extensions: 5632
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 5557
Number of HSP's successfully gapped: 46
Length of query: 774
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 667
Effective length of database: 8,679,953
Effective search space: 5789528651
Effective search space used: 5789528651
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002265
(2322 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1493 0.0
Sscrofa_Chr14 84 4e-13
>Sscrofa_Chr01
|| Length = 315321322
Score = 1493 bits (753), Expect = 0.0
Identities = 799/810 (98%), Gaps = 4/810 (0%)
Strand = Plus / Minus
Query: 1515 gcaattttcatttgggaggcggagagtgaattaccaacagggaattgggccttgggccta 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263380283 gcaattttcatttgggaggcggagagtgaattaccaacagggaattgggccttgggccta 263380224
Query: 1575 tgccacttctgttgtagttggggcagtgcaggggacctctgtgggtgcgaagaaaggcat 1634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263380223 tgccacttctgttgtagttggggcagtgcaggggacctctgtgggtgcgaagaaaggcat 263380164
Query: 1635 tattgccactccccacagtaaagcatctgcacttcactcaatgctgcccatgccctccct 1694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263380163 tattgccactccccacagtaaagcatctgcacttcactcaatgctgcccatgccctccct 263380104
Query: 1695 tcttccccctacccaacttgggcaggaggatgaagggctccagttgctgggtgtttatat 1754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263380103 tcttccccctacccaacttgggcaggaggatgaagggctccagttgctgggtgtttatat 263380044
Query: 1755 agagtaggttgatttttattttacatgcttttgagttaatgttggaaaactaatcacaag 1814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263380043 agagtaggttgatttttattttacatgcttttgagttaatgttggaaaactaatcacaag 263379984
Query: 1815 cagtttctaaaccaaaaatgacatgctgtaaaaggacaataaacgttgggtcaaaatgga 1874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263379983 cagtttctaaaccaaaaatgacatgctgtaaaaggacaataaacgttgggtcaaaatgga 263379924
Query: 1875 gcctgagtcctggcccctgtgcctgcttcttttcctgggaagggccttgggcctcattgc 1934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263379923 gcctgagtcctggcccctgtgcctgcttcttttcctgggaagggccttgggcctcattgc 263379864
Query: 1935 caaggcactcttccacatgtgaaatcctgggagtaggattgcaccaccttcccctcctga 1994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263379863 caaggcactcttccacatgtgaaatcctgggagtaggattgcaccaccttcccctcctga 263379804
Query: 1995 taacattggtatgctgctgcctcgcccagtgtttgcagtatcattggagaggactgcagt 2054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263379803 taacattggtatgctgctgcctcgcccagtgtttgcagtatcattggagaggactgcagt 263379744
Query: 2055 ggagggagagcagtcttacagagttccagtgcggagaatgtggcatcctccacctgtgtc 2114
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 263379743 ggagggagagcagtcttacagagttccagtgtggagaatgtggcatcctccacctgtgtc 263379684
Query: 2115 tggttgggtggtgagactagtcctggagagcccccattttctgactgangctggattggg 2174
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 263379683 tggttgggtggtgagactagtcctggagagcccccatttcctgactgaggctggattggg 263379624
Query: 2175 gtgcccntcaaaaatcttaaggttgtagaaaagtaaagtctctgtctggagagatggatg 2234
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 263379623 gtgccctccaaaaatcttaaggttgtagaaaggtaaagtctctgtctggagagatggatg 263379564
Query: 2235 tt-tctctgatgcatctaaaagttccatatattcatgtttctgg-taaggatcacttnac 2292
|| ||| |||||||||||||||||||||||||||||| |||||| |||||||||||| ||
Sbjct: 263379563 ttctct-tgatgcatctaaaagttccatatattcatg-ttctggttaaggatcacttaac 263379506
Query: 2293 aattatgtccacctttatcttatgtaattt 2322
||||||||||||||||||||||||||||||
Sbjct: 263379505 aattatgtccacctttatcttatgtaattt 263379476
Score = 565 bits (285), Expect = e-158
Identities = 303/312 (97%)
Strand = Plus / Minus
Query: 591 aggcccgccaagctgccccctgtgtactgttctttgatgagctggattcaattgccaagg 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263383121 aggcccgccaagctgccccctgtgtactgttctttgatgagctggattcaattgccaagg 263383062
Query: 651 cccgtggtggcaacattggagatggtggtggggctgccgaccgagtcatcaaccagatct 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263383061 cccgtggtggcaacattggagatggtggtggggctgccgaccgagtcatcaaccagatct 263383002
Query: 711 tgacagaaatggatggcatgtccacnnnnnnnnntgtgtttatcattggcgctaccaacc 770
||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 263383001 tgacagaaatggatggcatgtccacaaaaaaaaatgtgtttatcattggcgctaccaacc 263382942
Query: 771 gacctgacatcattgatcctgccatcttgcgacctggccgccttgatcagctcatctaca 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263382941 gacctgacatcattgatcctgccatcttgcgacctggccgccttgatcagctcatctaca 263382882
Query: 831 tcccacttcctgatgagaagtcccgtgtcgccattctcaaggccaacctgcgcaagtccc 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263382881 tcccacttcctgatgagaagtcccgtgtcgccattctcaaggccaacctgcgcaagtccc 263382822
Query: 891 ccgttgccaagg 902
||||||||||||
Sbjct: 263382821 ccgttgccaagg 263382810
Score = 537 bits (271), Expect = e-150
Identities = 271/271 (100%)
Strand = Plus / Minus
Query: 1211 agattcccttcaggaaaccaaggtggagctggacccagtcagggcagtggcggtggcaca 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263380587 agattcccttcaggaaaccaaggtggagctggacccagtcagggcagtggcggtggcaca 263380528
Query: 1271 ggtggcagtgtgtacacggaagataatgatgatgacctgtatggctaagtggtggtagcc 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263380527 ggtggcagtgtgtacacggaagataatgatgatgacctgtatggctaagtggtggtagcc 263380468
Query: 1331 agcatgcagtgagctggcctggctggactttgttccctgagggtgggggcgcccgcccag 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263380467 agcatgcagtgagctggcctggctggactttgttccctgagggtgggggcgcccgcccag 263380408
Query: 1391 gagggaccacgggtgcgcccacggcctgttccattcctcagtctgaacagttcagctaca 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263380407 gagggaccacgggtgcgcccacggcctgttccattcctcagtctgaacagttcagctaca 263380348
Query: 1451 gtcagactctggacagggggttaactgttgg 1481
|||||||||||||||||||||||||||||||
Sbjct: 263380347 gtcagactctggacagggggttaactgttgg 263380317
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Minus
Query: 378 agtatcctgtggagcacccagacaaattcctcaagtttggcatgacaccctccaagggag 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263383537 agtatcctgtggagcacccagacaaattcctcaagtttggcatgacaccctccaagggag 263383478
Query: 438 tgctattctatggacctcctggctgtgggaaaaccttgctggccaaagccattgctaatg 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263383477 tgctattctatggacctcctggctgtgggaaaaccttgctggccaaagccattgctaatg 263383418
Query: 498 agtgccaggccaacttcatctccatcaaaggtcctgagctgctcaccatgtggtttgggg 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263383417 agtgccaggccaacttcatctccatcaaaggtcctgagctgctcaccatgtggtttgggg 263383358
Query: 558 aatcagaggccaatgttagggaaatctttgacaagg 593
||||||||||||||||||||||||||||||||||||
Sbjct: 263383357 aatcagaggccaatgttagggaaatctttgacaagg 263383322
Score = 333 bits (168), Expect = 3e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 89 caggtagccaatgaaactcatgggcatgttggtgctgacttagcagccctgtgctcagag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263384179 caggtagccaatgaaactcatgggcatgttggtgctgacttagcagccctgtgctcagag 263384120
Query: 149 gctgctctgcaagccatccgcaaaaagatggacctcattgacctagaagacgaaaccatc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263384119 gctgctctgcaagccatccgcaaaaagatggacctcattgacctagaagacgaaaccatc 263384060
Query: 209 gatgctgaggtcatgaactccctggcagttaccatggatgacttccga 256
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263384059 gatgctgaggtcatgaactccctggcagttaccatggatgacttccga 263384012
Score = 315 bits (159), Expect = 6e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 900 aggatgtggatttggagttcctggctaagatgactaatggcttctctggagctgacttga 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263382537 aggatgtggatttggagttcctggctaagatgactaatggcttctctggagctgacttga 263382478
Query: 960 cagagatttgccaacgtgcttgcaagctggccatccgagaatcaatcgagagtgagatta 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263382477 cagagatttgccaacgtgcttgcaagctggccatccgagaatcaatcgagagtgagatta 263382418
Query: 1020 ggcgagaacgggagaggcagaccaacccatcggccatgg 1058
|||||||||||||||||||||||||||||||||||||||
Sbjct: 263382417 ggcgagaacgggagaggcagaccaacccatcggccatgg 263382379
Score = 309 bits (156), Expect = 4e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 1057 ggaggtagaggaagatgatccagtgcctgagatccgacgggatcactttgaggaagccat 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263380885 ggaggtagaggaagatgatccagtgcctgagatccgacgggatcactttgaggaagccat 263380826
Query: 1117 gcgttttgcccgccgttctgttagtgataatgacatccggaagtatgagatgtttgctca 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263380825 gcgttttgcccgccgttctgttagtgataatgacatccggaagtatgagatgtttgctca 263380766
Query: 1177 gacccttcagcagagtcgaggctttggcagcttcag 1212
||||||||||||||||||||||||||||||||||||
Sbjct: 263380765 gacccttcagcagagtcgaggctttggcagcttcag 263380730
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 257 tgggccctaagccagagcaacccatcagcacttcgggaaactgtggtagaggtgccacag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263383918 tgggccctaagccagagcaacccatcagcacttcgggaaactgtggtagaggtgccacag 263383859
Query: 317 gtgacctgggaggacattgggggcttggaggatgtcaaacgtgagcttcaggagctggtc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263383858 gtgacctgggaggacattgggggcttggaggatgtcaaacgtgagcttcaggagctggtc 263383799
Query: 377 cag 379
|||
Sbjct: 263383798 cag 263383796
Score = 182 bits (92), Expect = 6e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 2 attggaattcctgatgctacaggacgcttggaaattcttcaaatccataccaagaatatg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263384662 attggaattcctgatgctacaggacgcttggaaattcttcaaatccataccaagaatatg 263384603
Query: 62 aagctggcagatgatgtggaccttgaacaggt 93
||||||||||||||||||||||||||||||||
Sbjct: 263384602 aagctggcagatgatgtggaccttgaacaggt 263384571
>Sscrofa_Chr14
|| Length = 153851969
Score = 83.8 bits (42), Expect = 4e-13
Identities = 91/106 (85%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 1768 ttttattttacatgcttttgagttaatgttgga-aaactaatcacaagcagtttctaaac 1826
|||||||||||| | || ||||||||| ||| | |||| |||||||||||||||||||||
Sbjct: 57777822 ttttattttacaaggttctgagttaatcttgaacaaacaaatcacaagcagtttctaaac 57777881
Query: 1827 caaaaatgacatgctgtaaaaggacaataaacgttgggtcaaaatg 1872
|||||||||||| ||| |||| || |||||| || |||||||||
Sbjct: 57777882 taaaaatgacatgttgttaaagaaccataaacactgcgtcaaaatg 57777927
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 66,999,698
Number of extensions: 386
Number of successful extensions: 386
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 11
Length of query: 2322
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2300
Effective length of database: 2,808,408,574
Effective search space: 6459339720200
Effective search space used: 6459339720200
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)