Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002267
(2286 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029466.1| transitional endoplasmic reticulum ATPase [B... 1198 0.0
Alignment gi|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like... 459 e-129
Alignment gi|XP_001787757.2| PREDICTED: Cell Division Cycle related famil... 452 e-127
Alignment gi|XP_002694038.1| PREDICTED: nuclear VCP-like [Bos taurus]. 390 e-108
Alignment gi|XP_611864.5| PREDICTED: nuclear VCP-like [Bos taurus]. 389 e-108
Alignment gi|NP_001099095.1| spermatogenesis-associated protein 5-like pr... 343 5e-94
Alignment gi|NP_001179876.1| peroxisome assembly factor 2 [Bos taurus]. 243 4e-64
Alignment gi|XP_002697291.1| PREDICTED: peroxisomal biogenesis factor 6 [... 243 4e-64
Alignment gi|NP_001193679.1| ATPase family AAA domain-containing protein ... 219 6e-57
Alignment gi|NP_001014855.1| 26S protease regulatory subunit 4 [Bos tauru... 215 2e-55
>ref|NP_001029466.1| transitional endoplasmic reticulum ATPase [Bos taurus].
Length = 806
Score = 1198 bits (3100), Expect = 0.0
Identities = 614/667 (92%), Positives = 619/667 (92%)
Frame = +3
Query: 258 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 437
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
Sbjct: 1 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 60
Query: 438 GKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPCPDVKYGKRIHVLPID 617
GKKRREAVCIVLSDDTCSDEKIRM HLGDVISIQPCPDVKYGKRIHVLPID
Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPID 120
Query: 618 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 797
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
Sbjct: 121 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 180
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
Sbjct: 181 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 1337
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360
Query: 1338 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 1517
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
Sbjct: 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420
Query: 1518 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 1697
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
Sbjct: 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 480
Query: 1698 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 1877
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
Sbjct: 481 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540
Query: 1878 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXV 2057
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI + V
Sbjct: 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600
Query: 2058 INQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI*IHFLMKSPVSPFSRPN 2237
INQILTEMDGMS KKNVFIIGAT RPDIIDPAIL G DQLI I + + N
Sbjct: 601 INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660
Query: 2238 CASSPLS 2258
SP++
Sbjct: 661 LRKSPVA 667
Score = 200 bits (509), Expect = 4e-51
Identities = 111/279 (39%), Positives = 169/279 (60%), Gaps = 4/279 (1%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+IA R G+
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1215 ---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652
Query: 1386 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 1565
R+ IL+ + + +A DVDLE +A T+G GADL +C A AIR E+
Sbjct: 653 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR----------ES 702
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSALR-ETVVEVPQV 1679
I++E+ R Q+NPSA+ E VP++
Sbjct: 703 IESEIR----------RERERQTNPSAMEVEEDDPVPEI 731
>ref|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like, partial [Bos taurus].
Length = 1004
Score = 459 bits (1181), Expect = e-129
Identities = 234/459 (50%), Positives = 323/459 (70%), Gaps = 6/459 (1%)
Frame = +3
Query: 828 REDEEESLNE--VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPG 1001
R + ++ N+ V YD IGG QL +I+E++ELPL+ P LFK+ G+ PPRG+LLYGPPG
Sbjct: 449 RTNSKDQANQLKVTYDMIGGLNSQLKEIREIIELPLKQPELFKSYGIPPPRGVLLYGPPG 508
Query: 1002 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDA 1181
TGKT+IARAVANE GA+ +INGPEI+SK GE+E+ LR+ F EA P+IIFIDELDA
Sbjct: 509 TGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDA 568
Query: 1182 IAPKREKTHGEVERRIVSQLLTLMDGL---KQRAHVIVMAATNRPNSIDPALRRFGRFDR 1352
+ PKRE EVE+R+V+ LLTLMDG+ V+V+ ATNRP+++D ALRR GRFD+
Sbjct: 569 LCPKREGAQNEVEKRVVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDK 628
Query: 1353 EVDIGIPDATGRLEILQIHTKNM-KLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 1529
E++IG+P+A RL+ILQ + + L + +L Q+AN HG+VGADL ALC+EA L A+R
Sbjct: 629 EIEIGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEAGLHALR 688
Query: 1530 KKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLED 1709
+ ++ + D+++ + +T+ DF ++ PSA+RE V+VP V+W DIGGLE+
Sbjct: 689 R---VLRRQPNLPDSKMAGLVKITLKDFLQGMNDIRPSAMREVAVDVPNVSWSDIGGLEN 745
Query: 1710 VKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 1889
VK +L++ V++P++HP+ F + G+ P KGVL YGPPGC KT++AKA+ANE NF++IKG
Sbjct: 746 VKLKLKQAVEWPLKHPESFTQMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKG 805
Query: 1890 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXVINQI 2069
PEL+ + GESE VREIF KAR AP ++FFDELD++ V+ Q+
Sbjct: 806 PELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALA-VERGSSSGAGNVADRVLAQL 864
Query: 2070 LTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
LTEMDG+ Q KNV I+ AT RPD ID A++ G D++I
Sbjct: 865 LTEMDGIEQLKNVTILAATNRPDRIDKALMRPGRIDRII 903
Score = 212 bits (539), Expect = 1e-54
Identities = 107/227 (47%), Positives = 156/227 (68%), Gaps = 2/227 (0%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
V + DIGG ++K+ VE PL+HP F +G++PP+G+LLYGPPG KT+IA+A+AN
Sbjct: 735 VSWSDIGGLENVKLKLKQAVEWPLKHPESFTQMGIQPPKGVLLYGPPGCSKTMIAKALAN 794
Query: 1038 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG-- 1211
E+G F I GPE+M+K GESE +R+ F +A AP+IIF DELDA+A +R + G
Sbjct: 795 ESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAG 854
Query: 1212 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 1391
V R+++QLLT MDG++Q +V ++AATNRP+ ID AL R GR DR + + +PDA R
Sbjct: 855 NVADRVLAQLLTEMDGIEQLKNVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRR 914
Query: 1392 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 1532
EIL + +M + ++VDL ++ +T + GA++ A+C EAAL A+ +
Sbjct: 915 EILNLQFHSMPINNEVDLNELILQTDTYSGAEIIAVCREAALLALEE 961
>ref|XP_001787757.2| PREDICTED: Cell Division Cycle related family member (cdc-48.2)-like,
partial [Bos taurus].
Length = 786
Score = 452 bits (1163), Expect = e-127
Identities = 230/446 (51%), Positives = 315/446 (70%), Gaps = 6/446 (1%)
Frame = +3
Query: 828 REDEEESLNE--VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPG 1001
R + ++ N+ V YD IGG QL +I+E++ELPL+ P LFK+ G+ PPRG+LLYGPPG
Sbjct: 344 RTNSKDQANQLKVTYDMIGGLNSQLKEIREIIELPLKQPELFKSYGIPPPRGVLLYGPPG 403
Query: 1002 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDA 1181
TGKT+IARAVANE GA+ +INGPEI+SK GE+E+ LR+ F EA P+IIFIDELDA
Sbjct: 404 TGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDA 463
Query: 1182 IAPKREKTHGEVERRIVSQLLTLMDGL---KQRAHVIVMAATNRPNSIDPALRRFGRFDR 1352
+ PKRE EVE+R+V+ LLTLMDG+ V+V+ ATNRP+++D ALRR GRFD+
Sbjct: 464 LCPKREGAQNEVEKRVVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDK 523
Query: 1353 EVDIGIPDATGRLEILQIHTKNM-KLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 1529
E++IG+P+A RL+ILQ + + L + +L Q+AN HG+VGADL ALC+EA L A+R
Sbjct: 524 EIEIGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEAGLHALR 583
Query: 1530 KKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLED 1709
+ ++ + D+++ + +T+ DF ++ PSA+RE V+VP V+W DIGGLE+
Sbjct: 584 R---VLRRQPNLPDSKMAGLVKITLKDFLQGMNDIRPSAMREVAVDVPNVSWSDIGGLEN 640
Query: 1710 VKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 1889
VK +L++ V++P++HP+ F + G+ P KGVL YGPPGC KT++AKA+ANE NF++IKG
Sbjct: 641 VKLKLKQAVEWPLKHPESFTQMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKG 700
Query: 1890 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXVINQI 2069
PEL+ + GESE VREIF KAR AP ++FFDELD++ V+ Q+
Sbjct: 701 PELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALA-VERGSSSGAGNVADRVLAQL 759
Query: 2070 LTEMDGMSQKKNVFIIGATKRPDIID 2147
LTEMDG+ Q KNV I+ AT RPD ID
Sbjct: 760 LTEMDGIEQLKNVTILAATNRPDRID 785
Score = 131 bits (329), Expect = 3e-30
Identities = 66/174 (37%), Positives = 108/174 (62%), Gaps = 3/174 (1%)
Frame = +3
Query: 1674 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 1853
+VT++ IGGL +E++E+++ P++ P+ F +G+ P +GVL YGPPG GKT++A+A+A
Sbjct: 355 KVTYDMIGGLNSQLKEIREIIELPLKQPELFKSYGIPPPRGVLLYGPPGTGKTMIARAVA 414
Query: 1854 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXX 2033
NE A I GPE+++ ++GE+EA +R+IF +A P ++F DELD++C
Sbjct: 415 NEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQNE 474
Query: 2034 XXXXXXXVINQILTEMDGMSQKKN---VFIIGATKRPDIIDPAILPTGPPDQLI 2186
V+ +LT MDG+ + + V ++GAT RP +D A+ G D+ I
Sbjct: 475 VEKR---VVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEI 525
>ref|XP_002694038.1| PREDICTED: nuclear VCP-like [Bos taurus].
Length = 864
Score = 390 bits (1003), Expect = e-108
Identities = 220/507 (43%), Positives = 303/507 (59%), Gaps = 53/507 (10%)
Frame = +3
Query: 825 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 1004
K + E ++ V ++D+GG L ++ +M+ + +RHP ++ +GV PPRG+LL+GPPG
Sbjct: 250 KAKGLELQISSVKFEDVGGNDTTLKEVCKML-VHMRHPEVYHHLGVIPPRGVLLHGPPGC 308
Query: 1005 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 1184
GKTL+A A+A E + EI+S ++GESE LR+ FE+A +AP I+FIDE+DAI
Sbjct: 309 GKTLLAHAIAGELDLPILKVAATEIVSGVSGESEQKLRELFEQAVSSAPCILFIDEIDAI 368
Query: 1185 APKREKTHGEVERRIVSQLLTLMDGLKQ---RAHVIVMAATNRPNSIDPALRRFGRFDRE 1355
PKRE ++ERRIV+QLLT MD L A V+V+ ATNRP+S+DPALRR GRFDRE
Sbjct: 369 TPKREIASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDRE 428
Query: 1356 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKK 1535
+ +GIPD R ILQ + ++L + +A+ T G VGADL ALC EAA+ A+ +
Sbjct: 429 ICLGIPDEASRERILQTLCRKLRLPETFHFRHLAHLTPGFVGADLMALCREAAMCAVNRV 488
Query: 1536 MDLI-----------------DLEDET------------------------IDAEVMNSL 1592
+ + D E+ T + E + L
Sbjct: 489 LMELQGQHKKNPEIEASPSEGDQEERTGAEPTSKTQEELQRLLGLLRNQDPLSEEQLKGL 548
Query: 1593 AVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELV---------QYP 1745
+ ++DF ALS PSA RE VP VTW DIG LED++ EL + ++
Sbjct: 549 CIELNDFIVALSSVQPSAKREGFATVPNVTWADIGALEDIREELTMAILVDVGIVFSRFL 608
Query: 1746 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 1925
+ +PD+F G+ GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GESE
Sbjct: 609 LCNPDQFRVLGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESE 668
Query: 1926 ANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQKKN 2105
VR++F +A+ +APCV+FFDE+D++C V+NQ+LTEMDG+ ++
Sbjct: 669 RAVRQVFQRAKNSAPCVIFFDEVDALC---PRRSARETGASVRVVNQLLTEMDGLETRQQ 725
Query: 2106 VFIIGATKRPDIIDPAILPTGPPDQLI 2186
VFI+ AT RPDIIDPAIL G D+ +
Sbjct: 726 VFIMAATNRPDIIDPAILRPGRLDKTL 752
Score = 182 bits (462), Expect = 1e-45
Identities = 96/209 (45%), Positives = 139/209 (66%), Gaps = 5/209 (2%)
Frame = +3
Query: 927 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 1106
L +P F+ +G+ P G+LL GPPG GKTL+A+AVANE+G F + GPE+++ GESE
Sbjct: 609 LCNPDQFRVLGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESE 668
Query: 1107 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 1286
+R+ F+ A+ +AP +IF DE+DA+ P+R R+V+QLLT MDGL+ R V +
Sbjct: 669 RAVRQVFQRAKNSAPCVIFFDEVDALCPRRSARETGASVRVVNQLLTEMDGLETRQQVFI 728
Query: 1287 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN---MKLADDVDLEQVA 1457
MAATNRP+ IDPA+ R GR D+ + +G+P RL IL+ TKN L DV+LE +A
Sbjct: 729 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIA 788
Query: 1458 NETH--GHVGADLAALCSEAALQAIRKKM 1538
+ + GADL+AL EA++ A++++M
Sbjct: 789 GDLRCDCYTGADLSALVREASICALKQEM 817
>ref|XP_611864.5| PREDICTED: nuclear VCP-like [Bos taurus].
Length = 917
Score = 389 bits (1000), Expect = e-108
Identities = 218/503 (43%), Positives = 298/503 (59%), Gaps = 49/503 (9%)
Frame = +3
Query: 825 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 1004
K + E ++ V ++D+GG L ++ +M+ + +RHP ++ +GV PPRG+LL+GPPG
Sbjct: 307 KAKGLELQISSVKFEDVGGNDTTLKEVCKML-VHMRHPEVYHHLGVIPPRGVLLHGPPGC 365
Query: 1005 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 1184
GKTL+A A+A E + EI+S ++GESE LR+ FE+A +AP I+FIDE+DAI
Sbjct: 366 GKTLLAHAIAGELDLPILKVAATEIVSGVSGESEQKLRELFEQAVSSAPCILFIDEIDAI 425
Query: 1185 APKREKTHGEVERRIVSQLLTLMDGLKQ---RAHVIVMAATNRPNSIDPALRRFGRFDRE 1355
PKRE ++ERRIV+QLLT MD L A V+V+ ATNRP+S+DPALRR GRFDRE
Sbjct: 426 TPKREIASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDRE 485
Query: 1356 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK- 1532
+ +GIPD R ILQ + ++L + +A+ T G VGADL ALC EAA+ A+ +
Sbjct: 486 ICLGIPDEASRERILQTLCRKLRLPETFHFRHLAHLTPGFVGADLMALCREAAMCAVNRV 545
Query: 1533 ---------------------------------KMDLIDLEDE------------TIDAE 1577
K ++ +++E + E
Sbjct: 546 LMELQGQHKKNPEIEASPSEGDQEERTGAEPTSKTQVLPIQEELQRLLGLLRNQDPLSEE 605
Query: 1578 VMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHP 1757
+ L + ++DF ALS PSA RE VP VTW DIG LED++ EL + V
Sbjct: 606 QLKGLCIELNDFIVALSSVQPSAKREGFATVPNVTWADIGALEDIREELTMAILVGVSAT 665
Query: 1758 DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR 1937
FG+ GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GESE VR
Sbjct: 666 KLLEVFGLETPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVR 725
Query: 1938 EIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQKKNVFII 2117
++F +A+ +APCV+FFDE+D++C V+NQ+LTEMDG+ ++ VFI+
Sbjct: 726 QVFQRAKNSAPCVIFFDEVDALC---PRRSARETGASVRVVNQLLTEMDGLETRQQVFIM 782
Query: 2118 GATKRPDIIDPAILPTGPPDQLI 2186
AT RPDIIDPAIL G D+ +
Sbjct: 783 AATNRPDIIDPAILRPGRLDKTL 805
Score = 184 bits (467), Expect = 3e-46
Identities = 102/260 (39%), Positives = 157/260 (60%), Gaps = 6/260 (2%)
Frame = +3
Query: 777 CIVAPDTVIHCEG-EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKA 953
CI D ++ +P + + ++ V + DIG ++ + + + L +
Sbjct: 611 CIELNDFIVALSSVQPSAKREGFATVPNVTWADIGALEDIREELTMAILVGVSATKLLEV 670
Query: 954 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 1133
G++ P G+LL GPPG GKTL+A+AVANE+G F + GPE+++ GESE +R+ F+
Sbjct: 671 FGLETPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQR 730
Query: 1134 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 1313
A+ +AP +IF DE+DA+ P+R R+V+QLLT MDGL+ R V +MAATNRP+
Sbjct: 731 AKNSAPCVIFFDEVDALCPRRSARETGASVRVVNQLLTEMDGLETRQQVFIMAATNRPDI 790
Query: 1314 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN---MKLADDVDLEQVANETH--GHV 1478
IDPA+ R GR D+ + +G+P RL IL+ TKN L DV+LE +A + +
Sbjct: 791 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYT 850
Query: 1479 GADLAALCSEAALQAIRKKM 1538
GADL+AL EA++ A++++M
Sbjct: 851 GADLSALVREASICALKQEM 870
>ref|NP_001099095.1| spermatogenesis-associated protein 5-like protein 1 [Bos taurus].
Length = 767
Score = 343 bits (879), Expect = 5e-94
Identities = 199/540 (36%), Positives = 300/540 (55%), Gaps = 40/540 (7%)
Frame = +3
Query: 687 RPIRKGDIFLVRGG----MRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLN 854
RP+ +G + G + A+ P+P +V P T I P EEE
Sbjct: 142 RPVSQGYVVAAPPGAPGPVAALHIVSGAPSPNPAGLVTPRTHISLSEVP---PSEEEPQP 198
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
EV +GG + ++E++ LPLR+P ++G++ PRG+LL GPPG GKT + RAVA
Sbjct: 199 EV---PLGGLSEAADSLRELLRLPLRYPRALASLGLEVPRGVLLAGPPGVGKTQLVRAVA 255
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA---PAIIFIDELDAIAPKREKT 1205
ETGA ++ P + GE+E N+R+ F+ A + A P ++F+DE+DA+ P+R
Sbjct: 256 RETGAELLAVSAPALQGARPGETEENVRRIFKRARELASRRPTLLFLDEVDALCPRRGGP 315
Query: 1206 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
H E R+V+Q+LTL+DG+ + V+V+ +TNRP+++DPALRR GRFDREV IG P
Sbjct: 316 HQAPESRVVAQVLTLLDGIGEDREVVVVGSTNRPDALDPALRRPGRFDREVVIGTPTLRQ 375
Query: 1386 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 1565
R ILQ+ T M ++ VDL +A T G+VGADL ALC EAA+QA+ + ++ T
Sbjct: 376 RKAILQVITSKMPISGQVDLNLLAEMTVGYVGADLTALCREAAMQALLHSEK--NQDNPT 433
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSALRET--VVEVPQVTWEDIGGLEDVKRELQELVQ 1739
ID DF A + PS+ R V ++ V WE IGGLEDVK +L++ ++
Sbjct: 434 IDE----------TDFLEAFKKIQPSSFRSVIGVTDIKPVGWEQIGGLEDVKLKLKQSIE 483
Query: 1740 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 1919
+P++ P +F++ G+T KGVL YGPPGC KT L +A+A C+ +F+S+ G +L + + G+
Sbjct: 484 WPLKFPREFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCRCSFVSVSGADLFSPFVGD 543
Query: 1920 SEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQK 2099
SE + ++F +AR P ++F DE+DSI V++ +L E+DG+ K
Sbjct: 544 SEKILSQVFRQARANTPAIVFLDEIDSIL-GSRSISRTECNVQDRVLSVLLNELDGVGLK 602
Query: 2100 -------------------------------KNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
NV ++ AT RPD++D A+L G D++I
Sbjct: 603 TIERRGSKSDQHGKCKQLEKNEELEFQEIFNSNVIVVAATNRPDVLDDALLRPGRLDKII 662
Score = 172 bits (435), Expect = 2e-42
Identities = 101/261 (38%), Positives = 146/261 (55%), Gaps = 33/261 (12%)
Frame = +3
Query: 849 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 1028
+ VG++ IGG ++K+ +E PL+ P F +G+ P+G+LLYGPPG KT + RA
Sbjct: 460 IKPVGWEQIGGLEDVKLKLKQSIEWPLKFPREFVRMGLTQPKGVLLYGPPGCAKTTLVRA 519
Query: 1029 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--K 1202
+A F ++G ++ S G+SE L + F +A N PAI+F+DE+D+I R +
Sbjct: 520 LATSCRCSFVSVSGADLFSPFVGDSEKILSQVFRQARANTPAIVFLDEIDSILGSRSISR 579
Query: 1203 THGEVERRIVSQLLTLMDGL------------------KQ-------------RAHVIVM 1289
T V+ R++S LL +DG+ KQ ++VIV+
Sbjct: 580 TECNVQDRVLSVLLNELDGVGLKTIERRGSKSDQHGKCKQLEKNEELEFQEIFNSNVIVV 639
Query: 1290 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETH 1469
AATNRP+ +D AL R GR D+ + I PD GRL IL++ TKN + DV LE+VA ET
Sbjct: 640 AATNRPDVLDDALLRPGRLDKIIYIPPPDEKGRLSILKVCTKNTPMGPDVSLEKVAAETC 699
Query: 1470 GHVGADLAALCSEAALQAIRK 1532
GADL LC EAAL A+++
Sbjct: 700 FFSGADLGNLCKEAALLALQE 720
>ref|NP_001179876.1| peroxisome assembly factor 2 [Bos taurus].
Length = 980
Score = 243 bits (621), Expect = 4e-64
Identities = 147/410 (35%), Positives = 228/410 (55%), Gaps = 7/410 (1%)
Frame = +3
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
+LL GPPG+GKT A + G + + + +G E+ L+ AF A + P +
Sbjct: 466 VLLRGPPGSGKTTAVAAACSRLGLHLLKVPCSSLCADSSGAVETKLQAAFSRARRCRPVV 525
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLM---DGLKQRAHVIVMAATNRPNSIDPAL 1328
+ + +D + R+ GE + R+V+ L L+ D L ++V+A T+R + +
Sbjct: 526 LLLTAVDLLGRDRDGL-GE-DARVVATLRHLLLDEDPLASCPPLMVVATTSRAQDLPADV 583
Query: 1329 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC-- 1502
+ F E+++ + RL +L+ T ++ L +V+L Q+A G V DL AL
Sbjct: 584 QT--AFPHELEVPVLAEAQRLSVLRALTAHLPLGQEVNLAQLARRCAGFVVGDLFALLTH 641
Query: 1503 -SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-VVEVPQ 1676
S AA I+ L +E + +DF AL Q + + +P
Sbjct: 642 SSRAACTRIKNSGWAGGLSEEDEGELCAAGFPLLAEDFGQALEQLQAAHSQAIGAPRIPS 701
Query: 1677 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 1856
V+W D+GGL++VK+E+ E +Q P+EHP+ L G+ S G+L +GPPG GKTLLAKA+A
Sbjct: 702 VSWHDVGGLQEVKKEILETIQLPLEHPE-LLSLGLRRS-GLLLHGPPGTGKTLLAKAVAT 759
Query: 1857 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXX 2036
EC F+S+KGPEL+ M+ G+SE NVRE+F +AR AAPC++FFDELDS+
Sbjct: 760 ECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLA-PNRGRSGDS 818
Query: 2037 XXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
V++Q+L E+DG+ ++VF+IGAT RPD++DPA+L G D+L+
Sbjct: 819 GGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLV 868
Score = 185 bits (470), Expect = 1e-46
Identities = 109/278 (39%), Positives = 168/278 (60%), Gaps = 4/278 (1%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
V + D+GG ++ +I E ++LPL HP L ++G++ G+LL+GPPGTGKTL+A+AVA
Sbjct: 702 VSWHDVGGLQEVKKEILETIQLPLEHPELL-SLGLRRS-GLLLHGPPGTGKTLLAKAVAT 759
Query: 1038 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HG 1211
E F + GPE+++ G+SE N+R+ F A AP IIF DELD++AP R ++ G
Sbjct: 760 ECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPNRGRSGDSG 819
Query: 1212 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATGR 1388
V R+VSQLL +DGL V V+ ATNRP+ +DPAL R GRFD+ V +G+ D +
Sbjct: 820 GVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGVNEDRASQ 879
Query: 1389 LEILQIHTKNMKLADDVDLEQVANETHGHV-GADLAALCSEAALQAIRKKMDLIDLEDET 1565
L +L T+ +L V L V + + GADL +LCS+A A+++++ DLE+
Sbjct: 880 LRVLSAITRKFRLEPSVSLVDVLDHCPPQLTGADLYSLCSDAMTAALKRRVR--DLEEGL 937
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 1679
++L +TM+D A ++ PS + ++ ++
Sbjct: 938 EPGS--SALLLTMEDLLQAAARLQPSVSEQELLRYKRI 973
>ref|XP_002697291.1| PREDICTED: peroxisomal biogenesis factor 6 [Bos taurus].
Length = 980
Score = 243 bits (621), Expect = 4e-64
Identities = 147/410 (35%), Positives = 228/410 (55%), Gaps = 7/410 (1%)
Frame = +3
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
+LL GPPG+GKT A + G + + + +G E+ L+ AF A + P +
Sbjct: 466 VLLRGPPGSGKTTAVAAACSRLGLHLLKVPCSSLCADSSGAVETKLQAAFSRARRCRPVV 525
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLM---DGLKQRAHVIVMAATNRPNSIDPAL 1328
+ + +D + R+ GE + R+V+ L L+ D L ++V+A T+R + +
Sbjct: 526 LLLTAVDLLGRDRDGL-GE-DARVVATLRHLLLDEDPLASCPPLMVVATTSRAQDLPADV 583
Query: 1329 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC-- 1502
+ F E+++ + RL +L+ T ++ L +V+L Q+A G V DL AL
Sbjct: 584 QT--AFPHELEVPVLAEAQRLSVLRALTAHLPLGQEVNLAQLARRCAGFVVGDLFALLTH 641
Query: 1503 -SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-VVEVPQ 1676
S AA I+ L +E + +DF AL Q + + +P
Sbjct: 642 SSRAACTRIKNSGWAGGLSEEDEGELCAAGFPLLAEDFGQALEQLQAAHSQAIGAPRIPS 701
Query: 1677 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 1856
V+W D+GGL++VK+E+ E +Q P+EHP+ L G+ S G+L +GPPG GKTLLAKA+A
Sbjct: 702 VSWHDVGGLQEVKKEILETIQLPLEHPE-LLSLGLRRS-GLLLHGPPGTGKTLLAKAVAT 759
Query: 1857 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXX 2036
EC F+S+KGPEL+ M+ G+SE NVRE+F +AR AAPC++FFDELDS+
Sbjct: 760 ECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLA-PNRGRSGDS 818
Query: 2037 XXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
V++Q+L E+DG+ ++VF+IGAT RPD++DPA+L G D+L+
Sbjct: 819 GGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLV 868
Score = 185 bits (470), Expect = 1e-46
Identities = 109/278 (39%), Positives = 168/278 (60%), Gaps = 4/278 (1%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
V + D+GG ++ +I E ++LPL HP L ++G++ G+LL+GPPGTGKTL+A+AVA
Sbjct: 702 VSWHDVGGLQEVKKEILETIQLPLEHPELL-SLGLRRS-GLLLHGPPGTGKTLLAKAVAT 759
Query: 1038 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HG 1211
E F + GPE+++ G+SE N+R+ F A AP IIF DELD++AP R ++ G
Sbjct: 760 ECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPNRGRSGDSG 819
Query: 1212 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATGR 1388
V R+VSQLL +DGL V V+ ATNRP+ +DPAL R GRFD+ V +G+ D +
Sbjct: 820 GVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGVNEDRASQ 879
Query: 1389 LEILQIHTKNMKLADDVDLEQVANETHGHV-GADLAALCSEAALQAIRKKMDLIDLEDET 1565
L +L T+ +L V L V + + GADL +LCS+A A+++++ DLE+
Sbjct: 880 LRVLSAITRKFRLEPSVSLVDVLDHCPPQLTGADLYSLCSDAMTAALKRRVR--DLEEGL 937
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 1679
++L +TM+D A ++ PS + ++ ++
Sbjct: 938 EPGS--SALLLTMEDLLQAAARLQPSVSEQELLRYKRI 973
>ref|NP_001193679.1| ATPase family AAA domain-containing protein 2B-like [Bos taurus].
Length = 1458
Score = 219 bits (559), Expect = 6e-57
Identities = 123/272 (45%), Positives = 167/272 (61%), Gaps = 7/272 (2%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
V +D IGG + +KEMV PL +P +F+ ++PPRG L YGPPGTGKTL+ARA+AN
Sbjct: 397 VRFDSIGGLSHHIHALKEMVVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 456
Query: 1038 ETG-----AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 1202
E FF+ G + +SK GESE LR F++A P+IIF DE+D +AP R
Sbjct: 457 ECSQGDKKVAFFMRKGADCLSKWVGESERQLRLLFDQAYLMRPSIIFFDEIDGLAPVRSS 516
Query: 1203 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 1382
++ IVS LL LMDGL R ++V+ ATNR +SIDPALRR GRFDRE +PD
Sbjct: 517 RQDQIHSSIVSTLLALMDGLDNRGEIVVIGATNRLDSIDPALRRPGRFDREFLFNLPDQK 576
Query: 1383 GRLEILQIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 1556
R ILQIHT+ N KL+ D L ++A + G+ GAD+ ALC+EAAL A+R++ I
Sbjct: 577 ARKHILQIHTRDWNPKLS-DAFLGELAEKCVGYCGADIKALCTEAALIALRRRYPQIYAS 635
Query: 1557 DETIDAEVMNSLAVTMDDFRWALSQSNPSALR 1652
+ +V +S+ + DF A+ P++ R
Sbjct: 636 SHKLQLDV-SSIVLNAQDFYHAMQNIVPASQR 666
Score = 126 bits (317), Expect = 7e-29
Identities = 67/173 (38%), Positives = 100/173 (57%), Gaps = 5/173 (2%)
Frame = +3
Query: 1677 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 1856
V ++ IGGL L+E+V +P+ +P+ F KF + P +G LFYGPPG GKTL+A+A+AN
Sbjct: 397 VRFDSIGGLSHHIHALKEMVVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 456
Query: 1857 EC-----QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXX 2021
EC + F KG + L+ W GESE +R +FD+A P ++FFDE+D +
Sbjct: 457 ECSQGDKKVAFFMRKGADCLSKWVGESERQLRLLFDQAYLMRPSIIFFDEIDGLA---PV 513
Query: 2022 XXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQ 2180
+++ +L MDG+ + + +IGAT R D IDPA+ G D+
Sbjct: 514 RSSRQDQIHSSIVSTLLALMDGLDNRGEIVVIGATNRLDSIDPALRRPGRFDR 566
>ref|NP_001014855.1| 26S protease regulatory subunit 4 [Bos taurus].
Length = 440
Score = 215 bits (547), Expect = 2e-55
Identities = 112/257 (43%), Positives = 163/257 (63%), Gaps = 3/257 (1%)
Frame = +3
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
V+ + +P+ + E + Y DIGG Q+ +IKE VELPL HP ++ +G+KPP+G
Sbjct: 162 VLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKG 221
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
++LYGPPGTGKTL+A+AVAN+T A F + G E++ K G+ +R+ F AE++AP+I
Sbjct: 222 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSI 281
Query: 1158 IFIDELDAIAPKREKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 1328
+FIDE+DAI KR ++ ER R + +LL +DG R V V+ ATNR ++DPAL
Sbjct: 282 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPAL 341
Query: 1329 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 1508
R GR DR+++ +PD + I QIHT M LADDV L+ + GAD+ A+C+E
Sbjct: 342 IRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 401
Query: 1509 AALQAIRKKMDLIDLED 1559
A L A+R++ + ED
Sbjct: 402 AGLMALRERRMKVTNED 418
Score = 140 bits (353), Expect = 5e-33
Identities = 81/249 (32%), Positives = 137/249 (55%), Gaps = 1/249 (0%)
Frame = +3
Query: 1443 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI-DAEVMNSLAVTMDDFRW 1619
LE++ ++ H V + + + L + K DL++ + + +V + V MDD
Sbjct: 112 LEEIIDDNHAIVSTSVGSEHYVSILSFVDK--DLLEPGCSVLLNHKVHAVIGVLMDD--- 166
Query: 1620 ALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGV 1799
++P V + PQ T+ DIGGL++ +E++E V+ P+ HP+ + + G+ P KGV
Sbjct: 167 ----TDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGV 222
Query: 1800 LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL 1979
+ YGPPG GKTLLAKA+AN+ A F+ + G EL+ + G+ VRE+F A + AP ++
Sbjct: 223 ILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIV 282
Query: 1980 FFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAIL 2159
F DE+D+I + ++L ++DG + +V +I AT R + +DPA++
Sbjct: 283 FIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALI 342
Query: 2160 PTGPPDQLI 2186
G D+ I
Sbjct: 343 RPGRIDRKI 351
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 91,732,717
Number of extensions: 2635605
Number of successful extensions: 10077
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 9858
Number of HSP's successfully gapped: 104
Length of query: 762
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 652
Effective length of database: 14,041,694
Effective search space: 9155184488
Effective search space used: 9155184488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002267
(2286 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538712.2| PREDICTED: similar to Transitional endoplasmic ... 1200 0.0
Alignment gi|XP_866203.1| PREDICTED: similar to Transitional endoplasmic ... 1198 0.0
Alignment gi|XP_866191.1| PREDICTED: similar to Transitional endoplasmic ... 1198 0.0
Alignment gi|XP_866167.1| PREDICTED: similar to Transitional endoplasmic ... 1198 0.0
Alignment gi|XP_866075.1| PREDICTED: similar to Transitional endoplasmic ... 1198 0.0
Alignment gi|XP_852626.1| PREDICTED: similar to valosin-containing protei... 1198 0.0
Alignment gi|XP_866137.1| PREDICTED: similar to Transitional endoplasmic ... 1151 0.0
Alignment gi|XP_866054.1| PREDICTED: similar to valosin-containing protei... 1113 0.0
Alignment gi|XP_866152.1| PREDICTED: similar to Transitional endoplasmic ... 1090 0.0
Alignment gi|XP_866121.1| PREDICTED: similar to Transitional endoplasmic ... 912 0.0
>ref|XP_538712.2| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 1 [Canis
familiaris].
Length = 812
Score = 1200 bits (3104), Expect = 0.0
Identities = 615/670 (91%), Positives = 620/670 (92%)
Frame = +3
Query: 258 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 437
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
Sbjct: 1 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 60
Query: 438 GKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPCPDVKYGKRIHVLPID 617
GKKRREAVCIVLSDDTCSDEKIRM HLGDVISIQPCPDVKYGKRIHVLPID
Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPID 120
Query: 618 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 797
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
Sbjct: 121 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 180
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
Sbjct: 181 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 1337
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360
Query: 1338 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 1517
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
Sbjct: 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420
Query: 1518 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 1697
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
Sbjct: 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 480
Query: 1698 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 1877
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
Sbjct: 481 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540
Query: 1878 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXV 2057
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI + V
Sbjct: 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600
Query: 2058 INQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI*IHFLMKSPVSPFSRPN 2237
INQILTEMDGMS KKNVFIIGAT RPDIIDPAIL G DQLI I + + N
Sbjct: 601 INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660
Query: 2238 CASSPLSXRG 2267
SP++ G
Sbjct: 661 LRKSPVAKAG 670
Score = 194 bits (492), Expect = 4e-49
Identities = 111/285 (38%), Positives = 169/285 (59%), Gaps = 10/285 (3%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+IA R G+
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1215 ---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652
Query: 1386 RLEILQIHTKNMKLAD------DVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 1547
R+ IL+ + + +A DVDLE +A T+G GADL +C A AIR
Sbjct: 653 RVAILKANLRKSPVAKAGTRALDVDLEFLAKMTNGFSGADLTEICQRACKLAIR------ 706
Query: 1548 DLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALR-ETVVEVPQV 1679
E+I++E+ R Q+NPSA+ E VP++
Sbjct: 707 ----ESIESEIR----------RERERQTNPSAMEVEEDDPVPEI 737
>ref|XP_866203.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 13 [Canis
familiaris].
Length = 810
Score = 1198 bits (3100), Expect = 0.0
Identities = 614/667 (92%), Positives = 619/667 (92%)
Frame = +3
Query: 258 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 437
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
Sbjct: 1 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 60
Query: 438 GKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPCPDVKYGKRIHVLPID 617
GKKRREAVCIVLSDDTCSDEKIRM HLGDVISIQPCPDVKYGKRIHVLPID
Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPID 120
Query: 618 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 797
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
Sbjct: 121 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 180
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
Sbjct: 181 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 1337
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360
Query: 1338 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 1517
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
Sbjct: 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420
Query: 1518 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 1697
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
Sbjct: 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 480
Query: 1698 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 1877
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
Sbjct: 481 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540
Query: 1878 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXV 2057
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI + V
Sbjct: 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600
Query: 2058 INQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI*IHFLMKSPVSPFSRPN 2237
INQILTEMDGMS KKNVFIIGAT RPDIIDPAIL G DQLI I + + N
Sbjct: 601 INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660
Query: 2238 CASSPLS 2258
SP++
Sbjct: 661 LRKSPVA 667
Score = 200 bits (508), Expect = 6e-51
Identities = 99/232 (42%), Positives = 152/232 (65%), Gaps = 3/232 (1%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+IA R G+
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1215 ---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652
Query: 1386 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 1541
R+ IL+ + + +A DVDLE +A T+G GADL +C A AIR+ ++
Sbjct: 653 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 704
>ref|XP_866191.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 12 [Canis
familiaris].
Length = 819
Score = 1198 bits (3100), Expect = 0.0
Identities = 614/667 (92%), Positives = 619/667 (92%)
Frame = +3
Query: 258 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 437
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
Sbjct: 1 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 60
Query: 438 GKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPCPDVKYGKRIHVLPID 617
GKKRREAVCIVLSDDTCSDEKIRM HLGDVISIQPCPDVKYGKRIHVLPID
Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPID 120
Query: 618 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 797
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
Sbjct: 121 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 180
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
Sbjct: 181 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 1337
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360
Query: 1338 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 1517
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
Sbjct: 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420
Query: 1518 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 1697
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
Sbjct: 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 480
Query: 1698 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 1877
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
Sbjct: 481 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540
Query: 1878 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXV 2057
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI + V
Sbjct: 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600
Query: 2058 INQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI*IHFLMKSPVSPFSRPN 2237
INQILTEMDGMS KKNVFIIGAT RPDIIDPAIL G DQLI I + + N
Sbjct: 601 INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660
Query: 2238 CASSPLS 2258
SP++
Sbjct: 661 LRKSPVA 667
Score = 201 bits (511), Expect = 3e-51
Identities = 111/276 (40%), Positives = 169/276 (61%), Gaps = 4/276 (1%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+IA R G+
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1215 ---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652
Query: 1386 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 1565
R+ IL+ + + +A DVDLE +A T+G GADL +C A AIR E+
Sbjct: 653 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR----------ES 702
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSAL-RETVVEV 1670
I++E+ R Q+NPSA+ R ++EV
Sbjct: 703 IESEIR----------RERERQTNPSAMVRHMLLEV 728
>ref|XP_866167.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 11 [Canis
familiaris].
Length = 776
Score = 1198 bits (3100), Expect = 0.0
Identities = 614/667 (92%), Positives = 619/667 (92%)
Frame = +3
Query: 258 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 437
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
Sbjct: 1 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 60
Query: 438 GKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPCPDVKYGKRIHVLPID 617
GKKRREAVCIVLSDDTCSDEKIRM HLGDVISIQPCPDVKYGKRIHVLPID
Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPID 120
Query: 618 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 797
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
Sbjct: 121 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 180
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
Sbjct: 181 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 1337
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360
Query: 1338 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 1517
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
Sbjct: 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420
Query: 1518 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 1697
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
Sbjct: 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 480
Query: 1698 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 1877
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
Sbjct: 481 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540
Query: 1878 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXV 2057
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI + V
Sbjct: 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600
Query: 2058 INQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI*IHFLMKSPVSPFSRPN 2237
INQILTEMDGMS KKNVFIIGAT RPDIIDPAIL G DQLI I + + N
Sbjct: 601 INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660
Query: 2238 CASSPLS 2258
SP++
Sbjct: 661 LRKSPVA 667
Score = 200 bits (508), Expect = 6e-51
Identities = 99/232 (42%), Positives = 152/232 (65%), Gaps = 3/232 (1%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+IA R G+
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1215 ---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652
Query: 1386 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 1541
R+ IL+ + + +A DVDLE +A T+G GADL +C A AIR+ ++
Sbjct: 653 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 704
>ref|XP_866075.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 5 [Canis
familiaris].
Length = 759
Score = 1198 bits (3100), Expect = 0.0
Identities = 614/667 (92%), Positives = 619/667 (92%)
Frame = +3
Query: 258 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 437
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
Sbjct: 1 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 60
Query: 438 GKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPCPDVKYGKRIHVLPID 617
GKKRREAVCIVLSDDTCSDEKIRM HLGDVISIQPCPDVKYGKRIHVLPID
Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPID 120
Query: 618 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 797
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
Sbjct: 121 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 180
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
Sbjct: 181 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 1337
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360
Query: 1338 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 1517
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
Sbjct: 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420
Query: 1518 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 1697
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
Sbjct: 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 480
Query: 1698 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 1877
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
Sbjct: 481 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540
Query: 1878 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXV 2057
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI + V
Sbjct: 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600
Query: 2058 INQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI*IHFLMKSPVSPFSRPN 2237
INQILTEMDGMS KKNVFIIGAT RPDIIDPAIL G DQLI I + + N
Sbjct: 601 INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660
Query: 2238 CASSPLS 2258
SP++
Sbjct: 661 LRKSPVA 667
Score = 200 bits (508), Expect = 6e-51
Identities = 99/232 (42%), Positives = 152/232 (65%), Gaps = 3/232 (1%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+IA R G+
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1215 ---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652
Query: 1386 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 1541
R+ IL+ + + +A DVDLE +A T+G GADL +C A AIR+ ++
Sbjct: 653 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 704
>ref|XP_852626.1| PREDICTED: similar to valosin-containing protein isoform 3 [Canis
familiaris].
Length = 806
Score = 1198 bits (3100), Expect = 0.0
Identities = 614/667 (92%), Positives = 619/667 (92%)
Frame = +3
Query: 258 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 437
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
Sbjct: 1 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 60
Query: 438 GKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPCPDVKYGKRIHVLPID 617
GKKRREAVCIVLSDDTCSDEKIRM HLGDVISIQPCPDVKYGKRIHVLPID
Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPID 120
Query: 618 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 797
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
Sbjct: 121 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 180
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
Sbjct: 181 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 1337
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360
Query: 1338 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 1517
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
Sbjct: 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420
Query: 1518 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 1697
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
Sbjct: 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 480
Query: 1698 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 1877
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
Sbjct: 481 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540
Query: 1878 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXV 2057
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI + V
Sbjct: 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600
Query: 2058 INQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI*IHFLMKSPVSPFSRPN 2237
INQILTEMDGMS KKNVFIIGAT RPDIIDPAIL G DQLI I + + N
Sbjct: 601 INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660
Query: 2238 CASSPLS 2258
SP++
Sbjct: 661 LRKSPVA 667
Score = 200 bits (509), Expect = 4e-51
Identities = 111/279 (39%), Positives = 169/279 (60%), Gaps = 4/279 (1%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+IA R G+
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1215 ---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652
Query: 1386 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 1565
R+ IL+ + + +A DVDLE +A T+G GADL +C A AIR E+
Sbjct: 653 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR----------ES 702
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSALR-ETVVEVPQV 1679
I++E+ R Q+NPSA+ E VP++
Sbjct: 703 IESEIR----------RERERQTNPSAMEVEEDDPVPEI 731
>ref|XP_866137.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 9 [Canis
familiaris].
Length = 787
Score = 1151 bits (2977), Expect = 0.0
Identities = 595/667 (89%), Positives = 600/667 (89%)
Frame = +3
Query: 258 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 437
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
Sbjct: 1 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 60
Query: 438 GKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPCPDVKYGKRIHVLPID 617
GKKRREAVCIVLSDDTCSDEKIRM HLGDVISIQPCPDVKYGKRIHVLPID
Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPID 120
Query: 618 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 797
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
Sbjct: 121 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 180
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
Sbjct: 181 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN---- 296
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 1337
THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
Sbjct: 297 ---------------THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 341
Query: 1338 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 1517
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
Sbjct: 342 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 401
Query: 1518 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 1697
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
Sbjct: 402 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 461
Query: 1698 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 1877
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
Sbjct: 462 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 521
Query: 1878 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXV 2057
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI + V
Sbjct: 522 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 581
Query: 2058 INQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI*IHFLMKSPVSPFSRPN 2237
INQILTEMDGMS KKNVFIIGAT RPDIIDPAIL G DQLI I + + N
Sbjct: 582 INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 641
Query: 2238 CASSPLS 2258
SP++
Sbjct: 642 LRKSPVA 648
Score = 200 bits (509), Expect = 4e-51
Identities = 111/279 (39%), Positives = 169/279 (60%), Gaps = 4/279 (1%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 454 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 513
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+IA R G+
Sbjct: 514 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 573
Query: 1215 ---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 574 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 633
Query: 1386 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 1565
R+ IL+ + + +A DVDLE +A T+G GADL +C A AIR E+
Sbjct: 634 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR----------ES 683
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSALR-ETVVEVPQV 1679
I++E+ R Q+NPSA+ E VP++
Sbjct: 684 IESEIR----------RERERQTNPSAMEVEEDDPVPEI 712
>ref|XP_866054.1| PREDICTED: similar to valosin-containing protein isoform 4 [Canis
familiaris].
Length = 761
Score = 1113 bits (2880), Expect = 0.0
Identities = 569/622 (91%), Positives = 574/622 (92%)
Frame = +3
Query: 393 MDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPC 572
MDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRM HLGDVISIQPC
Sbjct: 1 MDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPC 60
Query: 573 PDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKV 752
PDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKV
Sbjct: 61 PDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKV 120
Query: 753 VETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLR 932
VETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLR
Sbjct: 121 VETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLR 180
Query: 933 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN 1112
HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN
Sbjct: 181 HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN 240
Query: 1113 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 1292
LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA
Sbjct: 241 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 300
Query: 1293 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 1472
ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG
Sbjct: 301 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 360
Query: 1473 HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALR 1652
HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALR
Sbjct: 361 HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALR 420
Query: 1653 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 1832
ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT
Sbjct: 421 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 480
Query: 1833 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQX 2012
LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI +
Sbjct: 481 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 540
Query: 2013 XXXXXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI*I 2192
VINQILTEMDGMS KKNVFIIGAT RPDIIDPAIL G DQLI I
Sbjct: 541 RGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 600
Query: 2193 HFLMKSPVSPFSRPNCASSPLS 2258
+ + N SP++
Sbjct: 601 PLPDEKSRVAILKANLRKSPVA 622
Score = 200 bits (509), Expect = 4e-51
Identities = 111/279 (39%), Positives = 169/279 (60%), Gaps = 4/279 (1%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 428 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 487
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+IA R G+
Sbjct: 488 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 547
Query: 1215 ---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 548 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 607
Query: 1386 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 1565
R+ IL+ + + +A DVDLE +A T+G GADL +C A AIR E+
Sbjct: 608 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR----------ES 657
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSALR-ETVVEVPQV 1679
I++E+ R Q+NPSA+ E VP++
Sbjct: 658 IESEIR----------RERERQTNPSAMEVEEDDPVPEI 686
>ref|XP_866152.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 10 [Canis
familiaris].
Length = 762
Score = 1090 bits (2818), Expect = 0.0
Identities = 570/667 (85%), Positives = 575/667 (86%)
Frame = +3
Query: 258 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 437
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
Sbjct: 1 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 60
Query: 438 GKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPCPDVKYGKRIHVLPID 617
GKKRREAVCIVLSDDTCSDEKIRM HLGDVISIQPCPDVKYGKRIHVLPID
Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPID 120
Query: 618 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 797
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
Sbjct: 121 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 180
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
VIHCEGEPIKRE PPRG
Sbjct: 181 VIHCEGEPIKRE--------------------------------------------PPRG 196
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
Sbjct: 197 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 256
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 1337
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
Sbjct: 257 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 316
Query: 1338 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 1517
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
Sbjct: 317 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 376
Query: 1518 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 1697
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
Sbjct: 377 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 436
Query: 1698 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 1877
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
Sbjct: 437 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 496
Query: 1878 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXV 2057
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI + V
Sbjct: 497 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 556
Query: 2058 INQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI*IHFLMKSPVSPFSRPN 2237
INQILTEMDGMS KKNVFIIGAT RPDIIDPAIL G DQLI I + + N
Sbjct: 557 INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 616
Query: 2238 CASSPLS 2258
SP++
Sbjct: 617 LRKSPVA 623
Score = 200 bits (509), Expect = 4e-51
Identities = 111/279 (39%), Positives = 169/279 (60%), Gaps = 4/279 (1%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 429 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 488
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+IA R G+
Sbjct: 489 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 548
Query: 1215 ---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 549 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 608
Query: 1386 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 1565
R+ IL+ + + +A DVDLE +A T+G GADL +C A AIR E+
Sbjct: 609 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR----------ES 658
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSALR-ETVVEVPQV 1679
I++E+ R Q+NPSA+ E VP++
Sbjct: 659 IESEIR----------RERERQTNPSAMEVEEDDPVPEI 687
>ref|XP_866121.1| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER
ATPase) (15S Mg(2+)-ATPase p97 subunit)
(Valosin-containing protein) (VCP) isoform 8 [Canis
familiaris].
Length = 505
Score = 912 bits (2357), Expect = 0.0
Identities = 464/474 (97%), Positives = 464/474 (97%)
Frame = +3
Query: 258 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 437
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
Sbjct: 1 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 60
Query: 438 GKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPCPDVKYGKRIHVLPID 617
GKKRREAVCIVLSDDTCSDEKIRM HLGDVISIQPCPDVKYGKRIHVLPID
Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPID 120
Query: 618 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 797
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
Sbjct: 121 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 180
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
Sbjct: 181 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 1337
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360
Query: 1338 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 1517
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
Sbjct: 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420
Query: 1518 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 1679
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV
Sbjct: 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 474
Score = 142 bits (359), Expect = 1e-33
Identities = 69/169 (40%), Positives = 108/169 (63%)
Frame = +3
Query: 1674 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 1853
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 1854 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXX 2033
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+I
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA---PKREKT 316
Query: 2034 XXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQ 2180
+++Q+LT MDG+ Q+ +V ++ AT RP+ IDPA+ G D+
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 365
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 95,873,464
Number of extensions: 2716875
Number of successful extensions: 10493
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 10180
Number of HSP's successfully gapped: 151
Length of query: 762
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 651
Effective length of database: 15,174,208
Effective search space: 9878409408
Effective search space used: 9878409408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002267
(2286 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo... 1195 0.0
Alignment gi|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapi... 454 e-127
Alignment gi|NP_001230076.1| nuclear valosin-containing protein-like isof... 413 e-115
Alignment gi|NP_996671.1| nuclear valosin-containing protein-like isoform... 413 e-115
Alignment gi|NP_002524.2| nuclear valosin-containing protein-like isoform... 413 e-115
Alignment gi|NP_001230075.1| nuclear valosin-containing protein-like isof... 399 e-111
Alignment gi|NP_076968.2| spermatogenesis-associated protein 5-like prote... 346 5e-95
Alignment gi|NP_000278.3| peroxisome biogenesis factor 6 [Homo sapiens]. 244 3e-64
Alignment gi|NP_054828.2| ATPase family AAA domain-containing protein 2 [... 223 5e-58
Alignment gi|NP_001229267.1| ATPase family AAA domain-containing protein ... 220 5e-57
>ref|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo sapiens].
Length = 806
Score = 1195 bits (3092), Expect = 0.0
Identities = 613/667 (91%), Positives = 618/667 (92%)
Frame = +3
Query: 258 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 437
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
Sbjct: 1 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 60
Query: 438 GKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPCPDVKYGKRIHVLPID 617
GKKRREAVCIVLSDDTCSDEKIRM LGDVISIQPCPDVKYGKRIHVLPID
Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID 120
Query: 618 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 797
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
Sbjct: 121 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 180
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
Sbjct: 181 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 1337
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360
Query: 1338 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 1517
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
Sbjct: 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420
Query: 1518 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 1697
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
Sbjct: 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 480
Query: 1698 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 1877
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
Sbjct: 481 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540
Query: 1878 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXV 2057
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI + V
Sbjct: 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600
Query: 2058 INQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI*IHFLMKSPVSPFSRPN 2237
INQILTEMDGMS KKNVFIIGAT RPDIIDPAIL G DQLI I + + N
Sbjct: 601 INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660
Query: 2238 CASSPLS 2258
SP++
Sbjct: 661 LRKSPVA 667
Score = 200 bits (509), Expect = 4e-51
Identities = 111/279 (39%), Positives = 169/279 (60%), Gaps = 4/279 (1%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+IA R G+
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1215 ---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652
Query: 1386 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 1565
R+ IL+ + + +A DVDLE +A T+G GADL +C A AIR E+
Sbjct: 653 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR----------ES 702
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSALR-ETVVEVPQV 1679
I++E+ R Q+NPSA+ E VP++
Sbjct: 703 IESEIR----------RERERQTNPSAMEVEEDDPVPEI 731
>ref|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapiens].
Length = 893
Score = 454 bits (1169), Expect = e-127
Identities = 230/458 (50%), Positives = 319/458 (69%), Gaps = 4/458 (0%)
Frame = +3
Query: 825 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 1004
K E+++ +V YD IGG QL I+E++ELPL+ P LFK+ G+ PRG+LLYGPPGT
Sbjct: 339 KNSKEQDNQFKVTYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRGVLLYGPPGT 398
Query: 1005 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 1184
GKT+IARAVANE GA+ +INGPEI+SK GE+E+ LR+ F EA P+IIFIDELDA+
Sbjct: 399 GKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSIIFIDELDAL 458
Query: 1185 APKREKTHGEVERRIVSQLLTLMDGL---KQRAHVIVMAATNRPNSIDPALRRFGRFDRE 1355
PKRE EVE+R+V+ LLTLMDG+ V+V+ ATNRP+++D ALRR GRFD+E
Sbjct: 459 CPKREGAQNEVEKRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAALRRPGRFDKE 518
Query: 1356 VDIGIPDATGRLEILQIHTKNM-KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 1532
++IG+P+A RL+ILQ + + L + +L Q+AN HG+VGADL LC+EA L A+R+
Sbjct: 519 IEIGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKVLCNEAGLCALRR 578
Query: 1533 KMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDV 1712
++ + D +V + +T+ DF A++ PSA+RE ++VP V+W DIGGLE +
Sbjct: 579 ---ILKKQPNLPDVKVAGLVKITLKDFLQAMNDIRPSAMREIAIDVPNVSWSDIGGLESI 635
Query: 1713 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 1892
K +L++ V++P++HP+ F++ G+ P KGVL YGPPGC KT++AKA+ANE NF++IKGP
Sbjct: 636 KLKLEQAVEWPLKHPESFIRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGP 695
Query: 1893 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXVINQIL 2072
EL+ + GESE VRE F KAR AP ++FFDELD++ V+ Q+L
Sbjct: 696 ELMNKYVGESERAVRETFRKARAVAPSIIFFDELDALA-VERGSSLGAGNVADRVLAQLL 754
Query: 2073 TEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
TEMDG+ Q K+V I+ AT RPD ID A++ G D++I
Sbjct: 755 TEMDGIEQLKDVTILAATNRPDRIDKALMRPGRIDRII 792
Score = 210 bits (534), Expect = 5e-54
Identities = 105/227 (46%), Positives = 157/227 (69%), Gaps = 2/227 (0%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
V + DIGG ++++ VE PL+HP F +G++PP+G+LLYGPPG KT+IA+A+AN
Sbjct: 624 VSWSDIGGLESIKLKLEQAVEWPLKHPESFIRMGIQPPKGVLLYGPPGCSKTMIAKALAN 683
Query: 1038 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HG 1211
E+G F I GPE+M+K GESE +R+ F +A AP+IIF DELDA+A +R + G
Sbjct: 684 ESGLNFLAIKGPELMNKYVGESERAVRETFRKARAVAPSIIFFDELDALAVERGSSLGAG 743
Query: 1212 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 1391
V R+++QLLT MDG++Q V ++AATNRP+ ID AL R GR DR + + +PDA R
Sbjct: 744 NVADRVLAQLLTEMDGIEQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRR 803
Query: 1392 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 1532
EI ++ +M ++++VDL+++ +T + GA++ A+C EAAL A+ +
Sbjct: 804 EIFKLQFHSMPVSNEVDLDELILQTDAYSGAEIVAVCREAALLALEE 850
>ref|NP_001230076.1| nuclear valosin-containing protein-like isoform 4 [Homo sapiens].
Length = 765
Score = 413 bits (1062), Expect = e-115
Identities = 227/493 (46%), Positives = 303/493 (61%), Gaps = 44/493 (8%)
Frame = +3
Query: 840 EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLI 1019
E ++ V ++D+GG L ++ +M+ + +RHP ++ +GV PPRG+LL+GPPG GKTL+
Sbjct: 165 EFQISNVKFEDVGGNDMTLKEVCKML-IHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLL 223
Query: 1020 ARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE 1199
A A+A E + PEI+S ++GESE LR+ FE+A NAP IIFIDE+DAI PKRE
Sbjct: 224 AHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKRE 283
Query: 1200 KTHGEVERRIVSQLLTLMDGLKQ---RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 1370
++ERRIV+QLLT MD L A V+V+ ATNRP+S+DPALRR GRFDRE+ +GI
Sbjct: 284 VASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGI 343
Query: 1371 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAI-------- 1526
PD R ILQ + ++L D +A+ T G VGADL ALC EAA+ A+
Sbjct: 344 PDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKLQ 403
Query: 1527 ---RKKMDLIDL------------------------------EDETIDAEVMNSLAVTMD 1607
+K ++ DL + + + E M L + ++
Sbjct: 404 EQQKKNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCIELN 463
Query: 1608 DFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP 1787
DF ALS PSA RE V VP VTW DIG LED++ EL + PV +PD+F G+
Sbjct: 464 DFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVT 523
Query: 1788 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA 1967
GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GESE VR++F +A+ +A
Sbjct: 524 PAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSA 583
Query: 1968 PCVLFFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIID 2147
PCV+FFDE+D++C V+NQ+LTEMDG+ ++ VFI+ AT RPDIID
Sbjct: 584 PCVIFFDEVDALC---PRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 640
Query: 2148 PAILPTGPPDQLI 2186
PAIL G D+ +
Sbjct: 641 PAILRPGRLDKTL 653
Score = 196 bits (499), Expect = 6e-50
Identities = 108/260 (41%), Positives = 161/260 (61%), Gaps = 6/260 (2%)
Frame = +3
Query: 777 CIVAPDTVIHCEG-EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKA 953
CI D ++ +P + + ++ V + DIG ++ + P+R+P FKA
Sbjct: 459 CIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKA 518
Query: 954 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 1133
+G+ P G+LL GPPG GKTL+A+AVANE+G F + GPE+++ GESE +R+ F+
Sbjct: 519 LGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQR 578
Query: 1134 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 1313
A+ +AP +IF DE+DA+ P+R R+V+QLLT MDGL+ R V +MAATNRP+
Sbjct: 579 AKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI 638
Query: 1314 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN---MKLADDVDLEQVANETH--GHV 1478
IDPA+ R GR D+ + +G+P RL IL+ TKN L DV+LE +A + +
Sbjct: 639 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYT 698
Query: 1479 GADLAALCSEAALQAIRKKM 1538
GADL+AL EA++ A+R++M
Sbjct: 699 GADLSALVREASICALRQEM 718
>ref|NP_996671.1| nuclear valosin-containing protein-like isoform 2 [Homo sapiens].
Length = 750
Score = 413 bits (1062), Expect = e-115
Identities = 227/493 (46%), Positives = 303/493 (61%), Gaps = 44/493 (8%)
Frame = +3
Query: 840 EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLI 1019
E ++ V ++D+GG L ++ +M+ + +RHP ++ +GV PPRG+LL+GPPG GKTL+
Sbjct: 150 EFQISNVKFEDVGGNDMTLKEVCKML-IHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLL 208
Query: 1020 ARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE 1199
A A+A E + PEI+S ++GESE LR+ FE+A NAP IIFIDE+DAI PKRE
Sbjct: 209 AHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKRE 268
Query: 1200 KTHGEVERRIVSQLLTLMDGLKQ---RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 1370
++ERRIV+QLLT MD L A V+V+ ATNRP+S+DPALRR GRFDRE+ +GI
Sbjct: 269 VASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGI 328
Query: 1371 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAI-------- 1526
PD R ILQ + ++L D +A+ T G VGADL ALC EAA+ A+
Sbjct: 329 PDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKLQ 388
Query: 1527 ---RKKMDLIDL------------------------------EDETIDAEVMNSLAVTMD 1607
+K ++ DL + + + E M L + ++
Sbjct: 389 EQQKKNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCIELN 448
Query: 1608 DFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP 1787
DF ALS PSA RE V VP VTW DIG LED++ EL + PV +PD+F G+
Sbjct: 449 DFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVT 508
Query: 1788 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA 1967
GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GESE VR++F +A+ +A
Sbjct: 509 PAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSA 568
Query: 1968 PCVLFFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIID 2147
PCV+FFDE+D++C V+NQ+LTEMDG+ ++ VFI+ AT RPDIID
Sbjct: 569 PCVIFFDEVDALC---PRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 625
Query: 2148 PAILPTGPPDQLI 2186
PAIL G D+ +
Sbjct: 626 PAILRPGRLDKTL 638
Score = 196 bits (499), Expect = 6e-50
Identities = 108/260 (41%), Positives = 161/260 (61%), Gaps = 6/260 (2%)
Frame = +3
Query: 777 CIVAPDTVIHCEG-EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKA 953
CI D ++ +P + + ++ V + DIG ++ + P+R+P FKA
Sbjct: 444 CIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKA 503
Query: 954 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 1133
+G+ P G+LL GPPG GKTL+A+AVANE+G F + GPE+++ GESE +R+ F+
Sbjct: 504 LGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQR 563
Query: 1134 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 1313
A+ +AP +IF DE+DA+ P+R R+V+QLLT MDGL+ R V +MAATNRP+
Sbjct: 564 AKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI 623
Query: 1314 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN---MKLADDVDLEQVANETH--GHV 1478
IDPA+ R GR D+ + +G+P RL IL+ TKN L DV+LE +A + +
Sbjct: 624 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYT 683
Query: 1479 GADLAALCSEAALQAIRKKM 1538
GADL+AL EA++ A+R++M
Sbjct: 684 GADLSALVREASICALRQEM 703
>ref|NP_002524.2| nuclear valosin-containing protein-like isoform 1 [Homo sapiens].
Length = 856
Score = 413 bits (1062), Expect = e-115
Identities = 227/493 (46%), Positives = 303/493 (61%), Gaps = 44/493 (8%)
Frame = +3
Query: 840 EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLI 1019
E ++ V ++D+GG L ++ +M+ + +RHP ++ +GV PPRG+LL+GPPG GKTL+
Sbjct: 256 EFQISNVKFEDVGGNDMTLKEVCKML-IHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLL 314
Query: 1020 ARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE 1199
A A+A E + PEI+S ++GESE LR+ FE+A NAP IIFIDE+DAI PKRE
Sbjct: 315 AHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKRE 374
Query: 1200 KTHGEVERRIVSQLLTLMDGLKQ---RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 1370
++ERRIV+QLLT MD L A V+V+ ATNRP+S+DPALRR GRFDRE+ +GI
Sbjct: 375 VASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGI 434
Query: 1371 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAI-------- 1526
PD R ILQ + ++L D +A+ T G VGADL ALC EAA+ A+
Sbjct: 435 PDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKLQ 494
Query: 1527 ---RKKMDLIDL------------------------------EDETIDAEVMNSLAVTMD 1607
+K ++ DL + + + E M L + ++
Sbjct: 495 EQQKKNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCIELN 554
Query: 1608 DFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP 1787
DF ALS PSA RE V VP VTW DIG LED++ EL + PV +PD+F G+
Sbjct: 555 DFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVT 614
Query: 1788 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA 1967
GVL GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GESE VR++F +A+ +A
Sbjct: 615 PAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSA 674
Query: 1968 PCVLFFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIID 2147
PCV+FFDE+D++C V+NQ+LTEMDG+ ++ VFI+ AT RPDIID
Sbjct: 675 PCVIFFDEVDALC---PRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 731
Query: 2148 PAILPTGPPDQLI 2186
PAIL G D+ +
Sbjct: 732 PAILRPGRLDKTL 744
Score = 196 bits (499), Expect = 6e-50
Identities = 108/260 (41%), Positives = 161/260 (61%), Gaps = 6/260 (2%)
Frame = +3
Query: 777 CIVAPDTVIHCEG-EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKA 953
CI D ++ +P + + ++ V + DIG ++ + P+R+P FKA
Sbjct: 550 CIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKA 609
Query: 954 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 1133
+G+ P G+LL GPPG GKTL+A+AVANE+G F + GPE+++ GESE +R+ F+
Sbjct: 610 LGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQR 669
Query: 1134 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 1313
A+ +AP +IF DE+DA+ P+R R+V+QLLT MDGL+ R V +MAATNRP+
Sbjct: 670 AKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI 729
Query: 1314 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN---MKLADDVDLEQVANETH--GHV 1478
IDPA+ R GR D+ + +G+P RL IL+ TKN L DV+LE +A + +
Sbjct: 730 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYT 789
Query: 1479 GADLAALCSEAALQAIRKKM 1538
GADL+AL EA++ A+R++M
Sbjct: 790 GADLSALVREASICALRQEM 809
>ref|NP_001230075.1| nuclear valosin-containing protein-like isoform 3 [Homo sapiens].
Length = 667
Score = 399 bits (1024), Expect = e-111
Identities = 227/520 (43%), Positives = 303/520 (58%), Gaps = 71/520 (13%)
Frame = +3
Query: 840 EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLI 1019
E ++ V ++D+GG L ++ +M+ + +RHP ++ +GV PPRG+LL+GPPG GKTL+
Sbjct: 40 EFQISNVKFEDVGGNDMTLKEVCKML-IHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLL 98
Query: 1020 ARAVAN---------------------------ETGAFFFLINGPEIMSKLAGESESNLR 1118
A A+A E + PEI+S ++GESE LR
Sbjct: 99 AHAIAGAECSGMITAHCSFDFSGSNDPPASASQELDLPILKVAAPEIVSGVSGESEQKLR 158
Query: 1119 KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ---RAHVIVM 1289
+ FE+A NAP IIFIDE+DAI PKRE ++ERRIV+QLLT MD L A V+V+
Sbjct: 159 ELFEQAVSNAPCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVI 218
Query: 1290 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETH 1469
ATNRP+S+DPALRR GRFDRE+ +GIPD R ILQ + ++L D +A+ T
Sbjct: 219 GATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLTP 278
Query: 1470 GHVGADLAALCSEAALQAI-----------RKKMDLIDL--------------------- 1553
G VGADL ALC EAA+ A+ +K ++ DL
Sbjct: 279 GFVGADLMALCREAAMCAVNRVLMKLQEQQKKNPEMEDLPSKGVQEERLGTEPTSETQDE 338
Query: 1554 ---------EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLE 1706
+ + + E M L + ++DF ALS PSA RE V VP VTW DIG LE
Sbjct: 339 LQRLLGLLRDQDPLSEEQMQGLCIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALE 398
Query: 1707 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 1886
D++ EL + PV +PD+F G+ GVL GPPGCGKTLLAKA+ANE NFIS+K
Sbjct: 399 DIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVK 458
Query: 1887 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXVINQ 2066
GPELL M+ GESE VR++F +A+ +APCV+FFDE+D++C V+NQ
Sbjct: 459 GPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALC---PRRSDRETGASVRVVNQ 515
Query: 2067 ILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
+LTEMDG+ ++ VFI+ AT RPDIIDPAIL G D+ +
Sbjct: 516 LLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTL 555
Score = 196 bits (499), Expect = 6e-50
Identities = 108/260 (41%), Positives = 161/260 (61%), Gaps = 6/260 (2%)
Frame = +3
Query: 777 CIVAPDTVIHCEG-EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKA 953
CI D ++ +P + + ++ V + DIG ++ + P+R+P FKA
Sbjct: 361 CIELNDFIVALSSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKA 420
Query: 954 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 1133
+G+ P G+LL GPPG GKTL+A+AVANE+G F + GPE+++ GESE +R+ F+
Sbjct: 421 LGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQR 480
Query: 1134 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 1313
A+ +AP +IF DE+DA+ P+R R+V+QLLT MDGL+ R V +MAATNRP+
Sbjct: 481 AKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI 540
Query: 1314 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN---MKLADDVDLEQVANETH--GHV 1478
IDPA+ R GR D+ + +G+P RL IL+ TKN L DV+LE +A + +
Sbjct: 541 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYT 600
Query: 1479 GADLAALCSEAALQAIRKKM 1538
GADL+AL EA++ A+R++M
Sbjct: 601 GADLSALVREASICALRQEM 620
>ref|NP_076968.2| spermatogenesis-associated protein 5-like protein 1 [Homo sapiens].
Length = 753
Score = 346 bits (888), Expect = 5e-95
Identities = 211/570 (37%), Positives = 314/570 (55%), Gaps = 30/570 (5%)
Frame = +3
Query: 567 PCPDVKYGKRIHVLPIDDTVEGITG--NLFEVYLKPYFLEAYRPIRKGDIFLVRGG---- 728
PCP ++ R+ V P+ G G N V L RPI G + + G
Sbjct: 103 PCPPLR---RVAVWPVLRERAGAPGARNTAAVLEAAQELLRNRPISLGHVVVAPPGAPGL 159
Query: 729 MRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIK 908
+ A+ P P +V P T + GEP E + EV +GG + ++
Sbjct: 160 VAALHIVGGTPSPDPAGLVTPRTRVSLGGEP---PSEAQPQPEV---PLGGLSEAADSLR 213
Query: 909 EMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 1088
E++ LPLR+P A+G+ PRG+LL GPPG GKT + RAVA E GA ++ P +
Sbjct: 214 ELLRLPLRYPRALTALGLAVPRGVLLAGPPGVGKTQLVRAVAREAGAELLAVSAPALQGS 273
Query: 1089 LAGESESNLRKAFEEAEKNA---PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG 1259
GE+E N+R+ F+ A + A P+++F+DE+DA+ P+R E R+V+Q+LTL+DG
Sbjct: 274 RPGETEENVRRVFQRARELASRGPSLLFLDEMDALCPQRGSR--APESRVVAQVLTLLDG 331
Query: 1260 LKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV 1439
V+V+ ATNRP+++DPALRR GRFDREV IG P R EILQ+ T M ++ V
Sbjct: 332 ASGDREVVVVGATNRPDALDPALRRPGRFDREVVIGTPTLKQRKEILQVITSKMPISSHV 391
Query: 1440 DLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRW 1619
DL +A T G+VGADL ALC EAA+ A+ ++ D V++ + DF
Sbjct: 392 DLGLLAEMTVGYVGADLTALCREAAMHALLHS-------EKNQDNPVIDEI-----DFLE 439
Query: 1620 ALSQSNPSALRETV--VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSK 1793
A PS+ R + +++ V WE+IGGLEDVK +L++ +++P++ P +F++ G+T K
Sbjct: 440 AFKNIQPSSFRSVIGLMDIKPVDWEEIGGLEDVKLKLKQSIEWPLKFPWEFVRMGLTQPK 499
Query: 1794 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPC 1973
GVL YGPPGC KT L +A+A C +F+S+ G +L + + G+SE + +IF +AR + P
Sbjct: 500 GVLLYGPPGCAKTTLVRALATSCHCSFVSVSGADLFSPFVGDSEKVLSQIFRQARASTPA 559
Query: 1974 VLFFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQK------------------ 2099
+LF DE+DSI V++ +L E+DG+ K
Sbjct: 560 ILFLDEIDSIL-GARSASKTGCDVQERVLSVLLNELDGVGLKTIERRGSKSSQQEFQEVF 618
Query: 2100 -KNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
++V II AT RPD++D A+L G D++I
Sbjct: 619 NRSVMIIAATNRPDVLDTALLRPGRLDKII 648
Score = 167 bits (424), Expect = 3e-41
Identities = 95/249 (38%), Positives = 144/249 (57%), Gaps = 21/249 (8%)
Frame = +3
Query: 849 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 1028
+ V +++IGG ++K+ +E PL+ P F +G+ P+G+LLYGPPG KT + RA
Sbjct: 458 IKPVDWEEIGGLEDVKLKLKQSIEWPLKFPWEFVRMGLTQPKGVLLYGPPGCAKTTLVRA 517
Query: 1029 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--K 1202
+A F ++G ++ S G+SE L + F +A + PAI+F+DE+D+I R K
Sbjct: 518 LATSCHCSFVSVSGADLFSPFVGDSEKVLSQIFRQARASTPAILFLDEIDSILGARSASK 577
Query: 1203 THGEVERRIVSQLLTLMDGLKQRA-------------------HVIVMAATNRPNSIDPA 1325
T +V+ R++S LL +DG+ + V+++AATNRP+ +D A
Sbjct: 578 TGCDVQERVLSVLLNELDGVGLKTIERRGSKSSQQEFQEVFNRSVMIIAATNRPDVLDTA 637
Query: 1326 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 1505
L R GR D+ + I PD GRL IL++ TK M + DV LE +A ET GADL LC+
Sbjct: 638 LLRPGRLDKIIYIPPPDHKGRLSILKVCTKTMPIGPDVSLENLAAETCFFSGADLRNLCT 697
Query: 1506 EAALQAIRK 1532
EAAL A+++
Sbjct: 698 EAALLALQE 706
>ref|NP_000278.3| peroxisome biogenesis factor 6 [Homo sapiens].
Length = 980
Score = 244 bits (622), Expect = 3e-64
Identities = 147/409 (35%), Positives = 226/409 (55%), Gaps = 6/409 (1%)
Frame = +3
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
+LL GPPG GKT + A + G + + ++ +G E+ L+ F A + PA+
Sbjct: 466 VLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVETKLQAIFSRARRCRPAV 525
Query: 1158 IFIDELDAIAPKREKTHGEVER--RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 1331
+ + +D + R+ GE R ++ LL D L ++V+A T+R + ++
Sbjct: 526 LLLTAVDLLGRDRDGL-GEDARVMAVLRHLLLNEDPLNSCPPLMVVATTSRAQDLPADVQ 584
Query: 1332 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC--- 1502
F E+++ RL IL+ T ++ L +V+L Q+A G V DL AL
Sbjct: 585 T--AFPHELEVPALSEGQRLSILRALTAHLPLGQEVNLAQLARRCAGFVVGDLYALLTHS 642
Query: 1503 SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-VVEVPQV 1679
S AA I+ L +E + +DF AL Q + + ++P V
Sbjct: 643 SRAACTRIKNSGLAGGLTEEDEGELCAAGFPLLAEDFGQALEQLQTAHSQAVGAPKIPSV 702
Query: 1680 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 1859
+W D+GGL++VK+E+ E +Q P+EHP+ L G+ S G+L +GPPG GKTLLAKA+A E
Sbjct: 703 SWHDVGGLQEVKKEILETIQLPLEHPE-LLSLGLRRS-GLLLHGPPGTGKTLLAKAVATE 760
Query: 1860 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXX 2039
C F+S+KGPEL+ M+ G+SE NVRE+F +AR AAPC++FFDELDS+
Sbjct: 761 CSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLA-PSRGRSGDSG 819
Query: 2040 XXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
V++Q+L E+DG+ ++VF+IGAT RPD++DPA+L G D+L+
Sbjct: 820 GVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLV 868
Score = 184 bits (466), Expect = 4e-46
Identities = 110/278 (39%), Positives = 167/278 (60%), Gaps = 4/278 (1%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
V + D+GG ++ +I E ++LPL HP L ++G++ G+LL+GPPGTGKTL+A+AVA
Sbjct: 702 VSWHDVGGLQEVKKEILETIQLPLEHPELL-SLGLRRS-GLLLHGPPGTGKTLLAKAVAT 759
Query: 1038 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HG 1211
E F + GPE+++ G+SE N+R+ F A AP IIF DELD++AP R ++ G
Sbjct: 760 ECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSG 819
Query: 1212 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATGR 1388
V R+VSQLL +DGL V V+ ATNRP+ +DPAL R GRFD+ V +G D +
Sbjct: 820 GVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGANEDRASQ 879
Query: 1389 LEILQIHTKNMKLADDVDLEQVANETHGHV-GADLAALCSEAALQAIRKKMDLIDLEDET 1565
L +L T+ KL V L V + + GADL +LCS+A A+++++ DLE+
Sbjct: 880 LRVLSAITRKFKLEPSVSLVNVLDCCPPQLTGADLYSLCSDAMTAALKRRVH--DLEEGL 937
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 1679
++L +TM+D A ++ PS + ++ ++
Sbjct: 938 EPGS--SALMLTMEDLLQAAARLQPSVSEQELLRYKRI 973
>ref|NP_054828.2| ATPase family AAA domain-containing protein 2 [Homo sapiens].
Length = 1390
Score = 223 bits (569), Expect = 5e-58
Identities = 119/273 (43%), Positives = 171/273 (62%), Gaps = 6/273 (2%)
Frame = +3
Query: 852 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 1031
+ V +D +GG +A +KEMV PL +P +F+ ++PPRG L YGPPGTGKTL+ARA+
Sbjct: 421 SSVRFDSVGGLSNHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARAL 480
Query: 1032 ANETG-----AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR 1196
ANE FF+ G + +SK GESE LR F++A + P+IIF DE+D +AP R
Sbjct: 481 ANECSQGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPSIIFFDEIDGLAPVR 540
Query: 1197 EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 1376
++ IVS LL LMDGL R ++V+ ATNR +SIDPALRR GRFDRE +PD
Sbjct: 541 SSRQDQIHSSIVSTLLALMDGLDSRGEIVVIGATNRLDSIDPALRRPGRFDREFLFSLPD 600
Query: 1377 ATGRLEILQIHTKNMKLAD-DVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 1553
R EIL+IHT++ D LE++A G+ GAD+ ++C+EAAL A+R++ I
Sbjct: 601 KEARKEILKIHTRDWNPKPLDTFLEELAENCVGYCGADIKSICAEAALCALRRRYPQIYT 660
Query: 1554 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALR 1652
E + + ++S+ ++ DF A+ + P++ R
Sbjct: 661 TSEKLQLD-LSSINISAKDFEVAMQKMIPASQR 692
Score = 129 bits (325), Expect = 9e-30
Identities = 67/173 (38%), Positives = 102/173 (58%), Gaps = 5/173 (2%)
Frame = +3
Query: 1677 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 1856
V ++ +GGL + L+E+V +P+ +P+ F KF + P +G LFYGPPG GKTL+A+A+AN
Sbjct: 423 VRFDSVGGLSNHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 482
Query: 1857 EC-----QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXX 2021
EC + F KG + L+ W GESE +R +FD+A Q P ++FFDE+D +
Sbjct: 483 ECSQGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPSIIFFDEIDGLA---PV 539
Query: 2022 XXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQ 2180
+++ +L MDG+ + + +IGAT R D IDPA+ G D+
Sbjct: 540 RSSRQDQIHSSIVSTLLALMDGLDSRGEIVVIGATNRLDSIDPALRRPGRFDR 592
>ref|NP_001229267.1| ATPase family AAA domain-containing protein 2B isoform 2 [Homo
sapiens].
Length = 1453
Score = 220 bits (560), Expect = 5e-57
Identities = 123/272 (45%), Positives = 168/272 (61%), Gaps = 7/272 (2%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
V +D IGG + +KEMV PL +P +F+ ++PPRG L YGPPGTGKTL+ARA+AN
Sbjct: 397 VRFDSIGGLSHHIHALKEMVVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 456
Query: 1038 ETG-----AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 1202
E FF+ G + +SK GESE LR F++A P+IIF DE+D +AP R
Sbjct: 457 ECSQGDKKVAFFMRKGADCLSKWVGESERQLRLLFDQAYLMRPSIIFFDEIDGLAPVRSS 516
Query: 1203 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 1382
++ IVS LL LMDGL R ++V+ ATNR +SIDPALRR GRFDRE +PD
Sbjct: 517 RQDQIHSSIVSTLLALMDGLDNRGEIVVIGATNRLDSIDPALRRPGRFDREFLFNLPDQK 576
Query: 1383 GRLEILQIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 1556
R ILQIHT+ N KL+ D L ++A + G+ GAD+ ALC+EAAL A+R++ I
Sbjct: 577 ARKHILQIHTRDWNPKLS-DAFLGELAEKCVGYCGADIKALCTEAALIALRRRYPQIYAS 635
Query: 1557 DETIDAEVMNSLAVTMDDFRWALSQSNPSALR 1652
+ +V +S+ ++ DF A+ P++ R
Sbjct: 636 SHKLQLDV-SSIVLSAQDFYHAMQNIVPASQR 666
Score = 126 bits (317), Expect = 8e-29
Identities = 67/173 (38%), Positives = 100/173 (57%), Gaps = 5/173 (2%)
Frame = +3
Query: 1677 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 1856
V ++ IGGL L+E+V +P+ +P+ F KF + P +G LFYGPPG GKTL+A+A+AN
Sbjct: 397 VRFDSIGGLSHHIHALKEMVVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 456
Query: 1857 EC-----QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXX 2021
EC + F KG + L+ W GESE +R +FD+A P ++FFDE+D +
Sbjct: 457 ECSQGDKKVAFFMRKGADCLSKWVGESERQLRLLFDQAYLMRPSIIFFDEIDGLA---PV 513
Query: 2022 XXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQ 2180
+++ +L MDG+ + + +IGAT R D IDPA+ G D+
Sbjct: 514 RSSRQDQIHSSIVSTLLALMDGLDNRGEIVVIGATNRLDSIDPALRRPGRFDR 566
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 93,998,861
Number of extensions: 2673535
Number of successful extensions: 9810
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 9612
Number of HSP's successfully gapped: 101
Length of query: 762
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 652
Effective length of database: 14,671,124
Effective search space: 9565572848
Effective search space used: 9565572848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002267
(2286 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus ... 1195 0.0
Alignment gi|NP_001156983.1| spermatogenesis-associated protein 5 isoform... 454 e-127
Alignment gi|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 ... 454 e-127
Alignment gi|NP_080447.1| nuclear valosin-containing protein-like [Mus mu... 410 e-114
Alignment gi|XP_001481383.2| PREDICTED: LOW QUALITY PROTEIN: spermatogene... 340 3e-93
Alignment gi|NP_663463.1| peroxisome assembly factor 2 [Mus musculus]. 246 4e-65
Alignment gi|NP_081711.2| ATPase family AAA domain-containing protein 2 [... 227 3e-59
Alignment gi|NP_001093098.1| ATPase family AAA domain-containing protein ... 220 4e-57
Alignment gi|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus]. 215 1e-55
Alignment gi|NP_082053.1| peroxisome biogenesis factor 1 [Mus musculus]. 202 7e-52
>ref|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus musculus].
Length = 806
Score = 1195 bits (3092), Expect = 0.0
Identities = 613/667 (91%), Positives = 618/667 (92%)
Frame = +3
Query: 258 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 437
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
Sbjct: 1 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 60
Query: 438 GKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPCPDVKYGKRIHVLPID 617
GKKRREAVCIVLSDDTCSDEKIRM LGDVISIQPCPDVKYGKRIHVLPID
Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID 120
Query: 618 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 797
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
Sbjct: 121 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 180
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
Sbjct: 181 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 1337
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360
Query: 1338 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 1517
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
Sbjct: 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420
Query: 1518 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 1697
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
Sbjct: 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 480
Query: 1698 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 1877
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
Sbjct: 481 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540
Query: 1878 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXV 2057
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI + V
Sbjct: 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600
Query: 2058 INQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI*IHFLMKSPVSPFSRPN 2237
INQILTEMDGMS KKNVFIIGAT RPDIIDPAIL G DQLI I + + N
Sbjct: 601 INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660
Query: 2238 CASSPLS 2258
SP++
Sbjct: 661 LRKSPVA 667
Score = 200 bits (509), Expect = 3e-51
Identities = 111/279 (39%), Positives = 169/279 (60%), Gaps = 4/279 (1%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
+V ++DIGG +++E+V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+IA R G+
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1215 ---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652
Query: 1386 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 1565
R+ IL+ + + +A DVDLE +A T+G GADL +C A AIR E+
Sbjct: 653 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR----------ES 702
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSALR-ETVVEVPQV 1679
I++E+ R Q+NPSA+ E VP++
Sbjct: 703 IESEIR----------RERERQTNPSAMEVEEDDPVPEI 731
>ref|NP_001156983.1| spermatogenesis-associated protein 5 isoform 1 [Mus musculus].
Length = 893
Score = 454 bits (1168), Expect = e-127
Identities = 231/454 (50%), Positives = 318/454 (70%), Gaps = 4/454 (0%)
Frame = +3
Query: 837 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTL 1016
E++S +V YD IGG QL I+E++ELPL+ P LFK+ G+ PRG+LLYGPPGTGKT+
Sbjct: 343 EQDSQFKVTYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTM 402
Query: 1017 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR 1196
IARAVANE GA+ +INGPEI+SK GE+E+ LR+ F EA P+IIFIDELDA+ PKR
Sbjct: 403 IARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKR 462
Query: 1197 EKTHGEVERRIVSQLLTLMDGL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 1367
E EVE+R+V+ LLTLMDG+ V+V+ ATNRP ++D ALRR GRFD+E++IG
Sbjct: 463 EGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIG 522
Query: 1368 IPDATGRLEILQIHTKNM-KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL 1544
IP+A RL+ILQ + + L +L ++AN HG+VGADL ALC+EA L A+R+ +
Sbjct: 523 IPNAQDRLDILQKLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRR---V 579
Query: 1545 IDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKREL 1724
+ + D++V + +T++DF ++ PSA+RE ++VP V+W DIGGLE++K +L
Sbjct: 580 LRKQPNLPDSKVAGMVKITLNDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKL 639
Query: 1725 QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 1904
++ V++P++HP F + G+ P KGVL YGPPGC KT++AKA+ANE NF++IKGPEL+
Sbjct: 640 KQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMN 699
Query: 1905 MWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXVINQILTEMD 2084
+ GESE VREIF KAR AP ++FFDELD++ V+ Q+LTEMD
Sbjct: 700 KYVGESERAVREIFRKARAVAPSIIFFDELDALA-VERGSSSGAGNVADRVLAQLLTEMD 758
Query: 2085 GMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
G+ Q KNV ++ AT RPD ID A++ G D++I
Sbjct: 759 GIEQLKNVTVLAATNRPDRIDKALMRPGRIDRII 792
Score = 215 bits (548), Expect = 1e-55
Identities = 108/229 (47%), Positives = 159/229 (69%), Gaps = 2/229 (0%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
V + DIGG ++K+ VE PL+HP F +G++PP+G+LLYGPPG KT+IA+A+AN
Sbjct: 624 VSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALAN 683
Query: 1038 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG-- 1211
E+G F I GPE+M+K GESE +R+ F +A AP+IIF DELDA+A +R + G
Sbjct: 684 ESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAG 743
Query: 1212 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 1391
V R+++QLLT MDG++Q +V V+AATNRP+ ID AL R GR DR + + +PDA R
Sbjct: 744 NVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRR 803
Query: 1392 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 1538
EIL + +M ++++VDL+++ +T + GA++ A+C EAAL A+ + +
Sbjct: 804 EILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVCKEAALLALEENI 852
>ref|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 [Mus musculus].
Length = 892
Score = 454 bits (1168), Expect = e-127
Identities = 231/454 (50%), Positives = 318/454 (70%), Gaps = 4/454 (0%)
Frame = +3
Query: 837 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTL 1016
E++S +V YD IGG QL I+E++ELPL+ P LFK+ G+ PRG+LLYGPPGTGKT+
Sbjct: 342 EQDSQFKVTYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTM 401
Query: 1017 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR 1196
IARAVANE GA+ +INGPEI+SK GE+E+ LR+ F EA P+IIFIDELDA+ PKR
Sbjct: 402 IARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKR 461
Query: 1197 EKTHGEVERRIVSQLLTLMDGL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIG 1367
E EVE+R+V+ LLTLMDG+ V+V+ ATNRP ++D ALRR GRFD+E++IG
Sbjct: 462 EGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIG 521
Query: 1368 IPDATGRLEILQIHTKNM-KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL 1544
IP+A RL+ILQ + + L +L ++AN HG+VGADL ALC+EA L A+R+ +
Sbjct: 522 IPNAQDRLDILQKLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGLHALRR---V 578
Query: 1545 IDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKREL 1724
+ + D++V + +T++DF ++ PSA+RE ++VP V+W DIGGLE++K +L
Sbjct: 579 LRKQPNLPDSKVAGMVKITLNDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKL 638
Query: 1725 QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 1904
++ V++P++HP F + G+ P KGVL YGPPGC KT++AKA+ANE NF++IKGPEL+
Sbjct: 639 KQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMN 698
Query: 1905 MWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXVINQILTEMD 2084
+ GESE VREIF KAR AP ++FFDELD++ V+ Q+LTEMD
Sbjct: 699 KYVGESERAVREIFRKARAVAPSIIFFDELDALA-VERGSSSGAGNVADRVLAQLLTEMD 757
Query: 2085 GMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
G+ Q KNV ++ AT RPD ID A++ G D++I
Sbjct: 758 GIEQLKNVTVLAATNRPDRIDKALMRPGRIDRII 791
Score = 215 bits (548), Expect = 1e-55
Identities = 108/229 (47%), Positives = 159/229 (69%), Gaps = 2/229 (0%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
V + DIGG ++K+ VE PL+HP F +G++PP+G+LLYGPPG KT+IA+A+AN
Sbjct: 623 VSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALAN 682
Query: 1038 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG-- 1211
E+G F I GPE+M+K GESE +R+ F +A AP+IIF DELDA+A +R + G
Sbjct: 683 ESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAG 742
Query: 1212 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 1391
V R+++QLLT MDG++Q +V V+AATNRP+ ID AL R GR DR + + +PDA R
Sbjct: 743 NVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRR 802
Query: 1392 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 1538
EIL + +M ++++VDL+++ +T + GA++ A+C EAAL A+ + +
Sbjct: 803 EILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVCKEAALLALEENI 851
>ref|NP_080447.1| nuclear valosin-containing protein-like [Mus musculus].
Length = 855
Score = 410 bits (1053), Expect = e-114
Identities = 224/498 (44%), Positives = 307/498 (61%), Gaps = 44/498 (8%)
Frame = +3
Query: 825 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 1004
K E ++ V ++D+GG L ++ +M+ + +RHP +++ +GV PPRG+LL+GPPG
Sbjct: 250 KARSTELQISNVKFEDVGGNDATLKEVCKML-IHMRHPEVYQHLGVVPPRGVLLHGPPGC 308
Query: 1005 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 1184
GKTL+A A+A E + PEI+S ++GESE LR+ F++A NAP I+FIDE+DAI
Sbjct: 309 GKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCIVFIDEIDAI 368
Query: 1185 APKREKTHGEVERRIVSQLLTLMDGLKQ---RAHVIVMAATNRPNSIDPALRRFGRFDRE 1355
PKRE ++ERRIV+QLLT MD L A V+V+ ATNRP+S+DPALRR GRFDRE
Sbjct: 369 TPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDRE 428
Query: 1356 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAI--- 1526
V +GIPD R ILQ + ++L + + +A+ T G VGADL ALC EAA+ A+
Sbjct: 429 VCLGIPDEAARERILQTLCRKLRLPETFNFCHLAHLTPGFVGADLMALCREAAMCAVNRV 488
Query: 1527 --------RKKMDLIDL------------------------------EDETIDAEVMNSL 1592
+KK ++ L + + + E M L
Sbjct: 489 LMKQQAQQKKKPEIEGLPSEGDQEERLGAEPTSETQDELQRLLGLLRDQDPLSEEQMQGL 548
Query: 1593 AVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLK 1772
+ ++DF AL++ PSA RE V VP VTW DIG LED++ EL + PV +PD+F
Sbjct: 549 CIELNDFIVALAEVQPSAKREGFVTVPNVTWADIGALEDIRDELIMAILAPVRNPDQFRT 608
Query: 1773 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDK 1952
G+ G+L GPPGCGKTLLAKA+ANE NFIS+KGPELL M+ GESE VR++F +
Sbjct: 609 LGLGTPAGILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQR 668
Query: 1953 ARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKR 2132
A+ +APCV+FFDE+D++C V+NQ+LTEMDG+ ++ VFI+ AT R
Sbjct: 669 AKNSAPCVIFFDEVDALC---PRRSDRETGASVRVVNQLLTEMDGLETRQQVFILAATNR 725
Query: 2133 PDIIDPAILPTGPPDQLI 2186
PDIIDPAIL G D+ +
Sbjct: 726 PDIIDPAILRPGRLDKTL 743
Score = 195 bits (495), Expect = 1e-49
Identities = 107/260 (41%), Positives = 163/260 (62%), Gaps = 6/260 (2%)
Frame = +3
Query: 777 CIVAPDTVIH-CEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKA 953
CI D ++ E +P + + ++ V + DIG ++ + P+R+P F+
Sbjct: 549 CIELNDFIVALAEVQPSAKREGFVTVPNVTWADIGALEDIRDELIMAILAPVRNPDQFRT 608
Query: 954 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 1133
+G+ P GILL GPPG GKTL+A+AVANE+G F + GPE+++ GESE +R+ F+
Sbjct: 609 LGLGTPAGILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQR 668
Query: 1134 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 1313
A+ +AP +IF DE+DA+ P+R R+V+QLLT MDGL+ R V ++AATNRP+
Sbjct: 669 AKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLETRQQVFILAATNRPDI 728
Query: 1314 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN---MKLADDVDLEQVANE--THGHV 1478
IDPA+ R GR D+ + +G+P R+ IL+ TKN L +DV+LE +AN+ + +
Sbjct: 729 IDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIANDLRCNCYT 788
Query: 1479 GADLAALCSEAALQAIRKKM 1538
GADL AL EA+L A+R+++
Sbjct: 789 GADLTALVREASLCALRQEI 808
Score = 127 bits (319), Expect = 4e-29
Identities = 71/190 (37%), Positives = 110/190 (57%), Gaps = 3/190 (1%)
Frame = +3
Query: 1620 ALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGV 1799
AL Q A R T +++ V +ED+GG + +E+ +++ + + HP+ + G+ P +GV
Sbjct: 243 ALLQKKAKA-RSTELQISNVKFEDVGGNDATLKEVCKMLIH-MRHPEVYQHLGVVPPRGV 300
Query: 1800 LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL 1979
L +GPPGCGKTLLA AIA E + + PE+++ GESE +RE+FD+A APC++
Sbjct: 301 LLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCIV 360
Query: 1980 FFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQ---KKNVFIIGATKRPDIIDP 2150
F DE+D+I ++ Q+LT MD ++ V +IGAT RPD +DP
Sbjct: 361 FIDEIDAI---TPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDP 417
Query: 2151 AILPTGPPDQ 2180
A+ G D+
Sbjct: 418 ALRRAGRFDR 427
>ref|XP_001481383.2| PREDICTED: LOW QUALITY PROTEIN: spermatogenesis associated 5-like 1
[Mus musculus].
Length = 756
Score = 340 bits (872), Expect = 3e-93
Identities = 201/574 (35%), Positives = 314/574 (54%), Gaps = 28/574 (4%)
Frame = +3
Query: 549 DVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFL---- 716
D + PCP ++ R+ V P+ G + + + L RP+ +G +
Sbjct: 93 DCLQPVPCPPLR---RLEVWPVLRPQAGAPSSAAVLEVVHELLRN-RPVSRGHVVTTPPG 148
Query: 717 VRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQL 896
V G + A+ DP P V P T I +P + G +GG +
Sbjct: 149 VPGPVAALHVMGGTPDPEPGGWVTPHTRITLSDKP------PPQVEPPGEVTLGGLSETA 202
Query: 897 AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 1076
++E++ LPLR+P A+G+ PRG+LL GPPG GKT + RAVA ETGA ++ P
Sbjct: 203 DSLRELLRLPLRYPLALAALGLAVPRGVLLAGPPGVGKTQLVRAVARETGAELLAVSAPA 262
Query: 1077 IMSKLAGESESNLRKAFEEAEKNA---PAIIFIDELDAIAPKREKTHGEVERRIVSQLLT 1247
+ GE+E N+R+ F+ A++ A P+++F+DE+DA+ P+R H E R+V+Q+LT
Sbjct: 263 LQGSRPGETEENVRRIFQRAQELASRGPSLLFLDEVDALCPRRGGPHRAPESRVVAQVLT 322
Query: 1248 LMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL 1427
L+DG+ + +V+ ATNRP+ +DPALRR GRFDREV IG P R ILQ+ T M +
Sbjct: 323 LLDGIHRDREFVVVGATNRPDELDPALRRPGRFDREVVIGTPTLKQREAILQVITSKMPI 382
Query: 1428 ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMD 1607
+ +DL +A T G+VGADL ALC EAA+ A+ K + + +S +
Sbjct: 383 SSHIDLGLLAEMTVGYVGADLTALCREAAMCALLK------------NEKNQDSPKIEET 430
Query: 1608 DFRWALSQSNPSALRET--VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM 1781
DF A + PS+ R + ++++ V WE IGGLEDVK +L++ V++P++ P +F + G+
Sbjct: 431 DFLEAFKKIQPSSFRSSTGLMDIKPVGWEQIGGLEDVKLKLKQCVEWPLKFPQEFARMGL 490
Query: 1782 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 1961
T KG+L YGPPGC KT L +A+A C +F+S+ G +L + + G+SE + ++F +AR
Sbjct: 491 TQPKGLLLYGPPGCAKTTLVRALATGCHCSFVSVCGADLFSPFVGDSEKVLSQVFRQARA 550
Query: 1962 AAPCVLFFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQK-------------- 2099
P ++F DE+DS+ V++ +L E+DG+ +
Sbjct: 551 NTPALVFLDEIDSVL-GSRSVGTSGCDARERVLSVLLNELDGVGVRTVERRGSKASQQEC 609
Query: 2100 -----KNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
++V I+ AT RPD++D A+L G D++I
Sbjct: 610 QEILSRSVMIVVATNRPDVLDDALLRPGRLDKII 643
Score = 162 bits (411), Expect = 8e-40
Identities = 100/282 (35%), Positives = 152/282 (53%), Gaps = 24/282 (8%)
Frame = +3
Query: 849 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 1028
+ VG++ IGG ++K+ VE PL+ P F +G+ P+G+LLYGPPG KT + RA
Sbjct: 453 IKPVGWEQIGGLEDVKLKLKQCVEWPLKFPQEFARMGLTQPKGLLLYGPPGCAKTTLVRA 512
Query: 1029 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-T 1205
+A F + G ++ S G+SE L + F +A N PA++F+DE+D++ R T
Sbjct: 513 LATGCHCSFVSVCGADLFSPFVGDSEKVLSQVFRQARANTPALVFLDEIDSVLGSRSVGT 572
Query: 1206 HG-EVERRIVSQLLTLMDGLKQRA-------------------HVIVMAATNRPNSIDPA 1325
G + R++S LL +DG+ R V+++ ATNRP+ +D A
Sbjct: 573 SGCDARERVLSVLLNELDGVGVRTVERRGSKASQQECQEILSRSVMIVVATNRPDVLDDA 632
Query: 1326 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 1505
L R GR D+ + + PD GRL IL++ T NM + DV LE +A ET GADL LC
Sbjct: 633 LLRPGRLDKIIYVPPPDQEGRLSILKVCTNNMPVGPDVSLENLAAETCFFSGADLRNLCK 692
Query: 1506 EAALQAIRKK--MDLIDLEDETIDAEVMNSLAV-TMDDFRWA 1622
E +L ++++K + ++ L T + E L V D RW+
Sbjct: 693 EVSLFSLKEKGALRILVLAAITPEPEPPRRLEVQDQDRKRWS 734
>ref|NP_663463.1| peroxisome assembly factor 2 [Mus musculus].
Length = 981
Score = 246 bits (629), Expect = 4e-65
Identities = 148/410 (36%), Positives = 228/410 (55%), Gaps = 7/410 (1%)
Frame = +3
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
+LL GPPG+GKT A + G + + + + E+ L+ F A + PA+
Sbjct: 467 VLLQGPPGSGKTTAVTAACSRLGLHLLKVPCSSLCADSSRAVETKLQATFSRARRCRPAV 526
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLM---DGLKQRAHVIVMAATNRPNSIDPAL 1328
+ + +D + R+ GE + R+ + L L+ D L + ++V+A T+R + +
Sbjct: 527 LLLTAVDLLGRDRDGL-GE-DARVAATLRHLLLDEDALSRCPPLMVVATTSRVQDLPTDV 584
Query: 1329 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 1508
+ F E+++ + RL ILQ T ++ L +V+L Q+A G V DL AL +
Sbjct: 585 QT--AFPHELEVPVLSEAQRLSILQALTAHLPLGQEVNLPQLARRCAGFVVGDLYALLTH 642
Query: 1509 ---AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET-VVEVPQ 1676
AA IR L +E + + +DF AL Q + + +P
Sbjct: 643 TCRAACTRIRASGSAGGLSEEDEGDLCVAGFPLLAEDFGQALDQLQTAHSQAVGAPRIPS 702
Query: 1677 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 1856
V+W D+GGL+DVK+E+ E +Q P+EHP+ L G+ S G+L +GPPG GKTLLAKA+A
Sbjct: 703 VSWHDVGGLQDVKKEILETIQLPLEHPE-LLSLGLRRS-GLLLHGPPGTGKTLLAKAVAT 760
Query: 1857 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXX 2036
EC F+S+KGPEL+ M+ G+SE NVRE+F +AR AAPC++FFDELDS+
Sbjct: 761 ECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLA-PSRGRSGDS 819
Query: 2037 XXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
V++Q+L E+DG+ ++VF+IGAT RPD++DPA+L G D+L+
Sbjct: 820 GGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLV 869
Score = 184 bits (466), Expect = 3e-46
Identities = 112/279 (40%), Positives = 169/279 (60%), Gaps = 5/279 (1%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
V + D+GG + +I E ++LPL HP L ++G++ G+LL+GPPGTGKTL+A+AVA
Sbjct: 703 VSWHDVGGLQDVKKEILETIQLPLEHPELL-SLGLRRS-GLLLHGPPGTGKTLLAKAVAT 760
Query: 1038 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HG 1211
E F + GPE+++ G+SE N+R+ F A AP IIF DELD++AP R ++ G
Sbjct: 761 ECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSG 820
Query: 1212 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATGR 1388
V R+VSQLL +DGL V V+ ATNRP+ +DPAL R GRFD+ V +G D +
Sbjct: 821 GVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQ 880
Query: 1389 LEILQIHTKNMKLADDVDLEQVANETHGHV-GADLAALCSEAALQAIRKKMDLIDLEDET 1565
L +L T+ KL V L V + + GADL +LCS+A + A+++++ DLE+
Sbjct: 881 LRVLSAITRKFKLEASVSLANVLDCCPPQLTGADLYSLCSDAMMTALKRRVR--DLEE-- 936
Query: 1566 IDAEVMNS-LAVTMDDFRWALSQSNPSALRETVVEVPQV 1679
E+ +S L +TM+D A ++ PS + ++ ++
Sbjct: 937 -GLELRSSALLLTMEDLLQAAARLQPSVSEQELLRYKRI 974
>ref|NP_081711.2| ATPase family AAA domain-containing protein 2 [Mus musculus].
Length = 1364
Score = 227 bits (579), Expect = 3e-59
Identities = 121/271 (44%), Positives = 171/271 (63%), Gaps = 6/271 (2%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
V +D +GG +A +KEMV PL +P +F+ ++PPRG L YGPPGTGKTL+ARA+AN
Sbjct: 402 VRFDSVGGLSSHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 461
Query: 1038 ETG-----AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 1202
E FF+ G + +SK GESE LR F++A + PAIIF DE+D +AP R
Sbjct: 462 ECSRGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPAIIFFDEIDGLAPVRSS 521
Query: 1203 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 1382
++ IVS LL LMDGL R ++V+ ATNR +SIDPALRR GRFDRE +PD
Sbjct: 522 RQDQIHSSIVSTLLALMDGLDSRGEIVVIGATNRLDSIDPALRRPGRFDREFLFSLPDKN 581
Query: 1383 GRLEILQIHTKNMKLAD-DVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 1559
R EIL+IHT++ D+ LE++A G+ GAD+ ++C+EAAL A+R++ I
Sbjct: 582 ARKEILKIHTRDWNPKPVDMFLEELAEHCVGYCGADIKSICAEAALCALRRRYPQIYTTS 641
Query: 1560 ETIDAEVMNSLAVTMDDFRWALSQSNPSALR 1652
E + + ++S+ ++ DF AL + P++ R
Sbjct: 642 EKLQLD-LSSITISAKDFEAALQKIRPASQR 671
Score = 129 bits (325), Expect = 8e-30
Identities = 67/173 (38%), Positives = 101/173 (58%), Gaps = 5/173 (2%)
Frame = +3
Query: 1677 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 1856
V ++ +GGL L+E+V +P+ +P+ F KF + P +G LFYGPPG GKTL+A+A+AN
Sbjct: 402 VRFDSVGGLSSHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 461
Query: 1857 EC-----QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXX 2021
EC + F KG + L+ W GESE +R +FD+A Q P ++FFDE+D +
Sbjct: 462 ECSRGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPAIIFFDEIDGLA---PV 518
Query: 2022 XXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQ 2180
+++ +L MDG+ + + +IGAT R D IDPA+ G D+
Sbjct: 519 RSSRQDQIHSSIVSTLLALMDGLDSRGEIVVIGATNRLDSIDPALRRPGRFDR 571
>ref|NP_001093098.1| ATPase family AAA domain-containing protein 2B [Mus musculus].
Length = 1460
Score = 220 bits (560), Expect = 4e-57
Identities = 123/272 (45%), Positives = 167/272 (61%), Gaps = 7/272 (2%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
V +D IGG + +KEMV PL +P +F+ ++PPRG L YGPPGTGKTL+ARA+AN
Sbjct: 396 VRFDSIGGLSHHIHALKEMVVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 455
Query: 1038 ETG-----AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 1202
E FF+ G + +SK GESE LR F++A P+IIF DE+D +AP R
Sbjct: 456 ECSQGDKKVAFFMRKGADCLSKWVGESERQLRLLFDQAYLMRPSIIFFDEIDGLAPVRSS 515
Query: 1203 THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 1382
++ IVS LL LMDGL R ++V+ ATNR +SIDPALRR GRFDRE +PD
Sbjct: 516 RQDQIHSSIVSTLLALMDGLDNRGEIVVIGATNRLDSIDPALRRPGRFDREFLFNLPDQR 575
Query: 1383 GRLEILQIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 1556
R ILQIHT+ N KL+ D L ++A + G+ GAD+ ALC+EAAL A+R++ I
Sbjct: 576 ARKHILQIHTRDWNPKLS-DAFLGELAEKCVGYCGADIKALCTEAALTALRRRYPQIYAS 634
Query: 1557 DETIDAEVMNSLAVTMDDFRWALSQSNPSALR 1652
+ +V S+ ++ DF A+ P++ R
Sbjct: 635 SHKLQLDV-TSIVLSAHDFYHAMQNIVPASQR 665
Score = 126 bits (317), Expect = 6e-29
Identities = 67/173 (38%), Positives = 100/173 (57%), Gaps = 5/173 (2%)
Frame = +3
Query: 1677 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 1856
V ++ IGGL L+E+V +P+ +P+ F KF + P +G LFYGPPG GKTL+A+A+AN
Sbjct: 396 VRFDSIGGLSHHIHALKEMVVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 455
Query: 1857 EC-----QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXX 2021
EC + F KG + L+ W GESE +R +FD+A P ++FFDE+D +
Sbjct: 456 ECSQGDKKVAFFMRKGADCLSKWVGESERQLRLLFDQAYLMRPSIIFFDEIDGLA---PV 512
Query: 2022 XXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQ 2180
+++ +L MDG+ + + +IGAT R D IDPA+ G D+
Sbjct: 513 RSSRQDQIHSSIVSTLLALMDGLDNRGEIVVIGATNRLDSIDPALRRPGRFDR 565
>ref|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus].
Length = 440
Score = 215 bits (547), Expect = 1e-55
Identities = 112/257 (43%), Positives = 163/257 (63%), Gaps = 3/257 (1%)
Frame = +3
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
V+ + +P+ + E + Y DIGG Q+ +IKE VELPL HP ++ +G+KPP+G
Sbjct: 162 VLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKG 221
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
++LYGPPGTGKTL+A+AVAN+T A F + G E++ K G+ +R+ F AE++AP+I
Sbjct: 222 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSI 281
Query: 1158 IFIDELDAIAPKREKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 1328
+FIDE+DAI KR ++ ER R + +LL +DG R V V+ ATNR ++DPAL
Sbjct: 282 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPAL 341
Query: 1329 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 1508
R GR DR+++ +PD + I QIHT M LADDV L+ + GAD+ A+C+E
Sbjct: 342 IRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 401
Query: 1509 AALQAIRKKMDLIDLED 1559
A L A+R++ + ED
Sbjct: 402 AGLMALRERRMKVTNED 418
Score = 140 bits (353), Expect = 4e-33
Identities = 81/249 (32%), Positives = 137/249 (55%), Gaps = 1/249 (0%)
Frame = +3
Query: 1443 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI-DAEVMNSLAVTMDDFRW 1619
LE++ ++ H V + + + L + K DL++ + + +V + V MDD
Sbjct: 112 LEEIIDDNHAIVSTSVGSEHYVSILSFVDK--DLLEPGCSVLLNHKVHAVIGVLMDD--- 166
Query: 1620 ALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGV 1799
++P V + PQ T+ DIGGL++ +E++E V+ P+ HP+ + + G+ P KGV
Sbjct: 167 ----TDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGV 222
Query: 1800 LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL 1979
+ YGPPG GKTLLAKA+AN+ A F+ + G EL+ + G+ VRE+F A + AP ++
Sbjct: 223 ILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIV 282
Query: 1980 FFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAIL 2159
F DE+D+I + ++L ++DG + +V +I AT R + +DPA++
Sbjct: 283 FIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALI 342
Query: 2160 PTGPPDQLI 2186
G D+ I
Sbjct: 343 RPGRIDRKI 351
>ref|NP_082053.1| peroxisome biogenesis factor 1 [Mus musculus].
Length = 1244
Score = 202 bits (515), Expect = 7e-52
Identities = 137/431 (31%), Positives = 217/431 (50%), Gaps = 29/431 (6%)
Frame = +3
Query: 978 ILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN 1145
+L+ G G+GK+ A+A+ E A ++ + K + L AF EA
Sbjct: 556 LLITGGKGSGKSTFAKAICKEAQDTLDARVETVDCKALRGKRLESIQKALEVAFSEAAWR 615
Query: 1146 APAIIFIDELDAIA-----PKREKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNR- 1304
P++I +D+LD IA P++E + V+ +R+ L ++ ++ + AT++
Sbjct: 616 QPSVILLDDLDLIAGLPSVPEQEHSPEAVQSQRLAHALNDMIKEFVSTGSLVALIATSQL 675
Query: 1305 PNSIDPAL---RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-----DVDLEQVAN 1460
S+ P+L + F + P+ R EIL KN D D+DL+ +A
Sbjct: 676 QQSLHPSLVSAQGIHTFQCVQHLQPPNPEQRCEILHSVVKNKLGCDISNFPDLDLQCIAK 735
Query: 1461 ETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP 1640
+T V D L A ++ ++ + L +T DF+ AL P
Sbjct: 736 DTEAFVARDFTVLVDRAIHSSLSRQ-----------HSSSREDLTLTTSDFQKALRGFLP 784
Query: 1641 SALRETVVEVPQ-VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPP 1817
++LR + P+ + W+ IGGL +V++ L + +Q P ++P+ F + G+L YGPP
Sbjct: 785 ASLRNVNLHKPRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPP 844
Query: 1818 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 1997
G GKTLLA +A E NFISIKGPELL+ + G SE VR++F +A+ A PC+LFFDE +
Sbjct: 845 GTGKTLLAGVVARESGMNFISIKGPELLSKYIGASEQAVRDVFIRAQAAKPCILFFDEFE 904
Query: 1998 SICQXXXXXXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTG--- 2168
SI V+NQ+LT++DG+ + V+++ AT RPD+IDPA+L G
Sbjct: 905 SIA---PRRGHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLD 961
Query: 2169 ------PPDQL 2183
PPDQ+
Sbjct: 962 KCVYCPPPDQV 972
Score = 196 bits (498), Expect = 7e-50
Identities = 104/228 (45%), Positives = 148/228 (64%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
++G+D IGG + + + ++LP ++P LF + ++ GILLYGPPGTGKTL+A VA
Sbjct: 797 DLGWDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVVA 856
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
E+G F I GPE++SK G SE +R F A+ P I+F DE ++IAP+R +
Sbjct: 857 RESGMNFISIKGPELLSKYIGASEQAVRDVFIRAQAAKPCILFFDEFESIAPRRGHDNTG 916
Query: 1215 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 1394
V R+V+QLLT +DG++ V V+AAT+RP+ IDPAL R GR D+ V PD RLE
Sbjct: 917 VTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLE 976
Query: 1395 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 1538
IL + +K++ LADDVDL+ VA+ T GADL AL A L+A++ ++
Sbjct: 977 ILTVLSKSLALADDVDLQHVASVTDSFTGADLKALLYNAQLEALQGRL 1024
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 79,584,752
Number of extensions: 2237155
Number of successful extensions: 8370
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 8210
Number of HSP's successfully gapped: 74
Length of query: 762
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 653
Effective length of database: 12,343,635
Effective search space: 8060393655
Effective search space used: 8060393655
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002267
(2286 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus ... 1197 0.0
Alignment gi|NP_001171384.1| spermatogenesis-associated protein 5 [Sus sc... 457 e-129
Alignment gi|XP_003353613.1| PREDICTED: transitional endoplasmic reticulu... 452 e-127
Alignment gi|NP_001171382.1| spermatogenesis-associated protein 5-like pr... 345 5e-95
Alignment gi|NP_001103896.1| peroxisome biogenesis factor 6 [Sus scrofa]. 247 2e-65
Alignment gi|XP_001926065.3| PREDICTED: ATPase family AAA domain-containi... 226 5e-59
Alignment gi|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4... 215 1e-55
Alignment gi|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4... 215 1e-55
Alignment gi|XP_003357485.1| PREDICTED: LOW QUALITY PROTEIN: peroxisome b... 210 3e-54
Alignment gi|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7... 200 3e-51
>ref|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus scrofa].
Length = 806
Score = 1197 bits (3097), Expect = 0.0
Identities = 613/667 (91%), Positives = 619/667 (92%)
Frame = +3
Query: 258 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 437
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
Sbjct: 1 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 60
Query: 438 GKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPCPDVKYGKRIHVLPID 617
GKKRREAVCIVLSDDTCSDEKIRM HLGDVISIQPCPDVKYGKRIHVLPID
Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPID 120
Query: 618 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 797
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
Sbjct: 121 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 180
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
Sbjct: 181 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 1158 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 1337
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360
Query: 1338 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 1517
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
Sbjct: 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420
Query: 1518 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 1697
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
Sbjct: 421 QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG 480
Query: 1698 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 1877
GLEDVKRELQ+LVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
Sbjct: 481 GLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540
Query: 1878 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXV 2057
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI + V
Sbjct: 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600
Query: 2058 INQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI*IHFLMKSPVSPFSRPN 2237
INQILTEMDGMS KKNVFIIGAT RPDIIDPAIL G DQLI I + + N
Sbjct: 601 INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660
Query: 2238 CASSPLS 2258
SP++
Sbjct: 661 LRKSPVA 667
Score = 199 bits (506), Expect = 5e-51
Identities = 110/279 (39%), Positives = 169/279 (60%), Gaps = 4/279 (1%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
+V ++DIGG +++++V+ P+ HP F G+ P +G+L YGPPG GKTL+A+A+A
Sbjct: 473 QVTWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
NE A F I GPE+++ GESE+N+R+ F++A + AP ++F DELD+IA R G+
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1215 ---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
R+++Q+LT MDG+ + +V ++ ATNRP+ IDPA+ R GR D+ + I +PD
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652
Query: 1386 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 1565
R+ IL+ + + +A DVDLE +A T+G GADL +C A AIR E+
Sbjct: 653 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR----------ES 702
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSALR-ETVVEVPQV 1679
I++E+ R Q+NPSA+ E VP++
Sbjct: 703 IESEIR----------RERERQTNPSAMEVEEDDPVPEI 731
>ref|NP_001171384.1| spermatogenesis-associated protein 5 [Sus scrofa].
Length = 887
Score = 457 bits (1177), Expect = e-129
Identities = 232/458 (50%), Positives = 323/458 (70%), Gaps = 4/458 (0%)
Frame = +3
Query: 825 KREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGT 1004
K +D++ L +V YD IGG QL +I+E++ELPL+ P LFK+ G+ PPRG+LLYGPPGT
Sbjct: 334 KSKDQDNQL-KVTYDMIGGLNSQLKEIREIIELPLKQPELFKSYGISPPRGVLLYGPPGT 392
Query: 1005 GKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI 1184
GKT+IARAVANE GA+ +INGPEI+SK GE+E+ LR+ F EA P+IIFIDELDA+
Sbjct: 393 GKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDAL 452
Query: 1185 APKREKTHGEVERRIVSQLLTLMDGL---KQRAHVIVMAATNRPNSIDPALRRFGRFDRE 1355
PKRE EVE+R+V+ LLTLMDG+ V+V+ ATNRP+++D ALRR GRFD+E
Sbjct: 453 CPKREGAQNEVEKRVVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKE 512
Query: 1356 VDIGIPDATGRLEILQIHTKNM-KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 1532
++IG+P+A RL+ILQ + + L + +L Q+AN HG+VGADL ALC+EA L A+R+
Sbjct: 513 IEIGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEAGLYALRR 572
Query: 1533 KMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDV 1712
++ + D++V + +T+ DF ++ PSA+RE ++VP V+W DIGGLE++
Sbjct: 573 ---VLRKQPNLPDSKVAGLVKITLKDFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENI 629
Query: 1713 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 1892
K +L++ V++P++HP+ F + G+ P KGVL YGPPGC KT++AKA+ANE NF++IKGP
Sbjct: 630 KLKLKQAVEWPLKHPESFTQMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGP 689
Query: 1893 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXVINQIL 2072
EL+ + GESE VREIF KAR AP ++FFDELD++ V+ Q+L
Sbjct: 690 ELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALA-VERGSSSGAGNVADRVLAQLL 748
Query: 2073 TEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
T MDG+ Q K+V I+ AT RPD ID A++ G D++I
Sbjct: 749 TXMDGIEQLKDVTILAATNRPDRIDKALMRPGRIDRII 786
Score = 211 bits (536), Expect = 2e-54
Identities = 106/227 (46%), Positives = 154/227 (67%), Gaps = 2/227 (0%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
V + DIGG ++K+ VE PL+HP F +G++PP+G+LLYGPPG KT+IA+A+AN
Sbjct: 618 VSWSDIGGLENIKLKLKQAVEWPLKHPESFTQMGIQPPKGVLLYGPPGCSKTMIAKALAN 677
Query: 1038 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG-- 1211
E+G F I GPE+M+K GESE +R+ F +A AP+IIF DELDA+A +R + G
Sbjct: 678 ESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAG 737
Query: 1212 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 1391
V R+++QLLT MDG++Q V ++AATNRP+ ID AL R GR DR + + +PDA R
Sbjct: 738 NVADRVLAQLLTXMDGIEQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRR 797
Query: 1392 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 1532
EI + +M ++ +VDL ++ +T + GA++ A+C EAAL A+ +
Sbjct: 798 EIFNLQFHSMPISKEVDLNELVLQTDTYSGAEIIAVCREAALLALEE 844
>ref|XP_003353613.1| PREDICTED: transitional endoplasmic reticulum ATPase-like [Sus
scrofa].
Length = 284
Score = 452 bits (1162), Expect = e-127
Identities = 226/236 (95%), Positives = 226/236 (95%)
Frame = +3
Query: 258 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 437
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
Sbjct: 1 MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 60
Query: 438 GKKRREAVCIVLSDDTCSDEKIRMXXXXXXXXXXHLGDVISIQPCPDVKYGKRIHVLPID 617
GKKRREAVCIVLSDDTCSDEKIRM HLGDVISIQPCPDVKYGKRIHVLPID
Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPID 120
Query: 618 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 797
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
Sbjct: 121 DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 180
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK 965
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK
Sbjct: 181 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK 236
>ref|NP_001171382.1| spermatogenesis-associated protein 5-like protein 1 [Sus scrofa].
Length = 755
Score = 345 bits (886), Expect = 5e-95
Identities = 198/528 (37%), Positives = 296/528 (56%), Gaps = 28/528 (5%)
Frame = +3
Query: 687 RPIRKGDIFLVRGG----MRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLN 854
RP+ G + G + A+ P P +V P T I G P E E
Sbjct: 142 RPVSLGHVVAAPPGTPGPVAALHIVSGAPSPDPAGLVTPRTHIGLSGVP---PSESEPPP 198
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
EV +GG + ++E++ LPL +P F ++G+ PRG+LL GPPG GKT + RAVA
Sbjct: 199 EV---PLGGLAEAADSLRELLRLPLLYPRSFASLGLAVPRGVLLAGPPGVGKTQLVRAVA 255
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA---PAIIFIDELDAIAPKREKT 1205
E GA ++ P + GE+E N+R+ F+ A++ A P ++F+DE+DA+ P+R
Sbjct: 256 REAGAELLAVSAPALQGARPGETEENVRRVFQRAQELAGRRPTLLFLDEVDALCPRRGGP 315
Query: 1206 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 1385
H E R+V+Q+LTL+DG+ V+V+ +TNRP+++DPALRR GRFDREV IG P
Sbjct: 316 HQAPESRVVAQVLTLLDGISGDREVVVVGSTNRPDALDPALRRPGRFDREVVIGTPTLGQ 375
Query: 1386 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 1565
R ILQ+ T M ++ VDL +A T G+VGADL ALC EAA+ A+ + +D
Sbjct: 376 RKAILQVITSKMPISSQVDLSLLAEMTVGYVGADLTALCREAAMHAL---LHSGKNQDNP 432
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSALRETV--VEVPQVTWEDIGGLEDVKRELQELVQ 1739
+ E+ DF A + PS+ R + ++V +TWE IGGLED KR+L++ ++
Sbjct: 433 LIDEI---------DFLEAFKKIQPSSFRSVIGLMDVKPITWEQIGGLEDAKRKLKQSIE 483
Query: 1740 YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 1919
+P++ P +F++ G+T KGVL YGPPGC KT L +A+A C +F+S+ G +L + + G+
Sbjct: 484 WPLKFPREFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCHCSFVSVSGADLFSPFVGD 543
Query: 1920 SEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQK 2099
SE + ++F +AR P V+F DE+DSI V++ +L E+DG+ K
Sbjct: 544 SEKILSQVFQQARANTPAVVFLDEIDSIL-GSRSISKTGCNVQERVLSVLLNELDGVGLK 602
Query: 2100 -------------------KNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
NV I+ AT RPD++D A+L G D++I
Sbjct: 603 TIERRGSKSDQHEFQEVFNSNVMIVAATNRPDVLDDALLRPGRLDKII 650
Score = 173 bits (438), Expect = 4e-43
Identities = 99/261 (37%), Positives = 149/261 (57%), Gaps = 21/261 (8%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
+ ++ IGG ++K+ +E PL+ P F +G+ P+G+LLYGPPG KT + RA+A
Sbjct: 463 ITWEQIGGLEDAKRKLKQSIEWPLKFPREFVRMGLTQPKGVLLYGPPGCAKTTLVRALAT 522
Query: 1038 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--KTHG 1211
F ++G ++ S G+SE L + F++A N PA++F+DE+D+I R KT
Sbjct: 523 SCHCSFVSVSGADLFSPFVGDSEKILSQVFQQARANTPAVVFLDEIDSILGSRSISKTGC 582
Query: 1212 EVERRIVSQLLTLMDGLKQR-------------------AHVIVMAATNRPNSIDPALRR 1334
V+ R++S LL +DG+ + ++V+++AATNRP+ +D AL R
Sbjct: 583 NVQERVLSVLLNELDGVGLKTIERRGSKSDQHEFQEVFNSNVMIVAATNRPDVLDDALLR 642
Query: 1335 FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAA 1514
GR D+ + I PD GRL IL++ TKNM + DV LE +A ET GADL LC EAA
Sbjct: 643 PGRLDKIIYIPPPDEKGRLSILRVCTKNMPVGPDVSLENLAAETCLFSGADLGNLCKEAA 702
Query: 1515 LQAIRKKMDLIDLEDETIDAE 1577
L A+++ LE T+ E
Sbjct: 703 LLALQEN----GLEATTVKQE 719
>ref|NP_001103896.1| peroxisome biogenesis factor 6 [Sus scrofa].
Length = 969
Score = 247 bits (631), Expect = 2e-65
Identities = 152/414 (36%), Positives = 230/414 (55%), Gaps = 8/414 (1%)
Frame = +3
Query: 969 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA 1148
P +LL GPPG+GKT A G + + + +G E+ L+ AF A +
Sbjct: 452 PGSVLLRGPPGSGKTTAVTAACGRLGLHLLKVPCSSLCADSSGAVETKLQAAFSRARRCR 511
Query: 1149 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM---DGLKQRAHVIVMAATNRPNSID 1319
P ++ + +D + R+ GE + R+V+ L L+ D L ++V+A T+R +
Sbjct: 512 PVVLLLTAVDLLGRDRDGL-GE-DARVVATLRRLLLDEDPLTSHPPLMVVATTSRAQDLP 569
Query: 1320 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL 1499
++ F E+++ + RL ILQ T ++ L +V+L Q+A G V DL AL
Sbjct: 570 ADVQT--AFPHELEVPVLSEGQRLSILQALTAHLPLGQEVNLAQLARRCAGFVVGDLYAL 627
Query: 1500 C---SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETV--V 1664
S AA I+ L +E + +D AL Q SA + V
Sbjct: 628 LTHSSRAACTRIKNSGWAGGLSEEDEGELCAAGFPLLAEDLGQALEQLQ-SAHSQAVGAP 686
Query: 1665 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 1844
++P V+W D+GGL++VK+E+ E +Q P+EHP+ L G+ S G+L +GPPG GKTLLAK
Sbjct: 687 KIPSVSWHDVGGLQEVKKEILETIQLPLEHPE-LLSLGLRRS-GLLLHGPPGTGKTLLAK 744
Query: 1845 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXX 2024
A+A EC F+S+KGPEL+ M+ G+SE NVRE+F +AR AAPC++FFDELDS+
Sbjct: 745 AVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLA-PSRGR 803
Query: 2025 XXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
V++Q+L E+DG+ ++VF+IGAT RPD++DPA+L G D+L+
Sbjct: 804 SGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLV 857
Score = 183 bits (464), Expect = 4e-46
Identities = 109/278 (39%), Positives = 166/278 (59%), Gaps = 4/278 (1%)
Frame = +3
Query: 858 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 1037
V + D+GG ++ +I E ++LPL HP L ++G++ G+LL+GPPGTGKTL+A+AVA
Sbjct: 691 VSWHDVGGLQEVKKEILETIQLPLEHPELL-SLGLRRS-GLLLHGPPGTGKTLLAKAVAT 748
Query: 1038 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HG 1211
E F + GPE+++ G+SE N+R+ F A AP IIF DELD++AP R ++ G
Sbjct: 749 ECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSG 808
Query: 1212 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI-PDATGR 1388
V R+VSQLL +DGL V V+ ATNRP+ +DPAL R GRFD+ V +G D +
Sbjct: 809 GVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQ 868
Query: 1389 LEILQIHTKNMKLADDVDLEQVANETHGHV-GADLAALCSEAALQAIRKKMDLIDLEDET 1565
L +L T+ +L V L V + + GADL +LC++A A+++++ DLED
Sbjct: 869 LRVLSAITRKFRLEPSVSLVAVLDHCPPQLTGADLYSLCADAMTAALKRRVR--DLEDGL 926
Query: 1566 IDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQV 1679
++L +TM+D A ++ PS ++ ++
Sbjct: 927 EPGS--SALLLTMEDLLQAAARLQPSVSEHELLRYKRI 962
>ref|XP_001926065.3| PREDICTED: ATPase family AAA domain-containing protein 2 [Sus
scrofa].
Length = 1388
Score = 226 bits (575), Expect = 5e-59
Identities = 120/273 (43%), Positives = 172/273 (63%), Gaps = 6/273 (2%)
Frame = +3
Query: 852 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 1031
+ V +D +GG +A +KEMV PL +P +F+ ++PPRG L YGPPGTGKTL+ARA+
Sbjct: 417 SSVRFDSVGGLSNHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARAL 476
Query: 1032 ANETG-----AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR 1196
ANE FF+ G + +SK GESE LR F++A + P+IIF DE+D +AP R
Sbjct: 477 ANECSQGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPSIIFFDEIDGLAPVR 536
Query: 1197 EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 1376
++ IVS LL LMDGL R ++V+ ATNR +SIDPALRR GRFDRE +PD
Sbjct: 537 SSRQDQIHSSIVSTLLALMDGLDSRGEIVVIGATNRLDSIDPALRRPGRFDREFLFSLPD 596
Query: 1377 ATGRLEILQIHTKNMKLAD-DVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 1553
R EIL+IHT++ D+ LE++A G+ GAD+ ++CSEAAL A+R++ I
Sbjct: 597 KDARKEILKIHTRDWNPKPLDMFLEELAENCVGYCGADIKSICSEAALCALRRRYPQIYT 656
Query: 1554 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALR 1652
E + + ++S+ ++ DF A+ + P++ R
Sbjct: 657 TSEKLQLD-LSSITISAKDFEVAMQKMIPASQR 688
Score = 129 bits (325), Expect = 5e-30
Identities = 67/173 (38%), Positives = 102/173 (58%), Gaps = 5/173 (2%)
Frame = +3
Query: 1677 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 1856
V ++ +GGL + L+E+V +P+ +P+ F KF + P +G LFYGPPG GKTL+A+A+AN
Sbjct: 419 VRFDSVGGLSNHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 478
Query: 1857 EC-----QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXX 2021
EC + F KG + L+ W GESE +R +FD+A Q P ++FFDE+D +
Sbjct: 479 ECSQGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQMRPSIIFFDEIDGLA---PV 535
Query: 2022 XXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQ 2180
+++ +L MDG+ + + +IGAT R D IDPA+ G D+
Sbjct: 536 RSSRQDQIHSSIVSTLLALMDGLDSRGEIVVIGATNRLDSIDPALRRPGRFDR 588
>ref|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4 isoform 2 [Sus scrofa].
Length = 367
Score = 215 bits (547), Expect = 1e-55
Identities = 112/257 (43%), Positives = 163/257 (63%), Gaps = 3/257 (1%)
Frame = +3
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
V+ + +P+ + E + Y DIGG Q+ +IKE VELPL HP ++ +G+KPP+G
Sbjct: 89 VLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKG 148
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
++LYGPPGTGKTL+A+AVAN+T A F + G E++ K G+ +R+ F AE++AP+I
Sbjct: 149 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSI 208
Query: 1158 IFIDELDAIAPKREKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 1328
+FIDE+DAI KR ++ ER R + +LL +DG R V V+ ATNR ++DPAL
Sbjct: 209 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPAL 268
Query: 1329 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 1508
R GR DR+++ +PD + I QIHT M LADDV L+ + GAD+ A+C+E
Sbjct: 269 IRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 328
Query: 1509 AALQAIRKKMDLIDLED 1559
A L A+R++ + ED
Sbjct: 329 AGLMALRERRMKVTNED 345
Score = 140 bits (353), Expect = 3e-33
Identities = 81/249 (32%), Positives = 137/249 (55%), Gaps = 1/249 (0%)
Frame = +3
Query: 1443 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI-DAEVMNSLAVTMDDFRW 1619
LE++ ++ H V + + + L + K DL++ + + +V + V MDD
Sbjct: 39 LEEIIDDNHAIVSTSVGSEHYVSILSFVDK--DLLEPGCSVLLNHKVHAVIGVLMDD--- 93
Query: 1620 ALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGV 1799
++P V + PQ T+ DIGGL++ +E++E V+ P+ HP+ + + G+ P KGV
Sbjct: 94 ----TDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGV 149
Query: 1800 LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL 1979
+ YGPPG GKTLLAKA+AN+ A F+ + G EL+ + G+ VRE+F A + AP ++
Sbjct: 150 ILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIV 209
Query: 1980 FFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAIL 2159
F DE+D+I + ++L ++DG + +V +I AT R + +DPA++
Sbjct: 210 FIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALI 269
Query: 2160 PTGPPDQLI 2186
G D+ I
Sbjct: 270 RPGRIDRKI 278
>ref|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Sus scrofa].
Length = 440
Score = 215 bits (547), Expect = 1e-55
Identities = 112/257 (43%), Positives = 163/257 (63%), Gaps = 3/257 (1%)
Frame = +3
Query: 798 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 977
V+ + +P+ + E + Y DIGG Q+ +IKE VELPL HP ++ +G+KPP+G
Sbjct: 162 VLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKG 221
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 1157
++LYGPPGTGKTL+A+AVAN+T A F + G E++ K G+ +R+ F AE++AP+I
Sbjct: 222 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSI 281
Query: 1158 IFIDELDAIAPKREKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 1328
+FIDE+DAI KR ++ ER R + +LL +DG R V V+ ATNR ++DPAL
Sbjct: 282 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPAL 341
Query: 1329 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 1508
R GR DR+++ +PD + I QIHT M LADDV L+ + GAD+ A+C+E
Sbjct: 342 IRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 401
Query: 1509 AALQAIRKKMDLIDLED 1559
A L A+R++ + ED
Sbjct: 402 AGLMALRERRMKVTNED 418
Score = 140 bits (353), Expect = 3e-33
Identities = 81/249 (32%), Positives = 137/249 (55%), Gaps = 1/249 (0%)
Frame = +3
Query: 1443 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI-DAEVMNSLAVTMDDFRW 1619
LE++ ++ H V + + + L + K DL++ + + +V + V MDD
Sbjct: 112 LEEIIDDNHAIVSTSVGSEHYVSILSFVDK--DLLEPGCSVLLNHKVHAVIGVLMDD--- 166
Query: 1620 ALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGV 1799
++P V + PQ T+ DIGGL++ +E++E V+ P+ HP+ + + G+ P KGV
Sbjct: 167 ----TDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGV 222
Query: 1800 LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL 1979
+ YGPPG GKTLLAKA+AN+ A F+ + G EL+ + G+ VRE+F A + AP ++
Sbjct: 223 ILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIV 282
Query: 1980 FFDELDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAIL 2159
F DE+D+I + ++L ++DG + +V +I AT R + +DPA++
Sbjct: 283 FIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALI 342
Query: 2160 PTGPPDQLI 2186
G D+ I
Sbjct: 343 RPGRIDRKI 351
>ref|XP_003357485.1| PREDICTED: LOW QUALITY PROTEIN: peroxisome biogenesis factor 1-like
[Sus scrofa].
Length = 1282
Score = 210 bits (534), Expect = 3e-54
Identities = 147/433 (33%), Positives = 221/433 (51%), Gaps = 31/433 (7%)
Frame = +3
Query: 978 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS--KLAGESESNLRK----AFEEAE 1139
+LL G G+GK+ +A+A+ E AF L EI+ L G+ NL+K AF EA
Sbjct: 595 LLLTGGKGSGKSTLAKAICKE--AFDVLDAHVEIVDCKALRGKRLENLQKTIVAAFSEAS 652
Query: 1140 KNAPAIIFIDELDAIA-----PKREKTHGEVERRIVSQLLTLM--DGLKQRAHVIVMAAT 1298
P+++ +D+LD +A P+ E + V+ + ++ L M + + + V ++A +
Sbjct: 653 WRQPSVVLLDDLDLVAGLPALPEHEHSPEAVQSQRLAHALNDMTKELISMGSLVALIATS 712
Query: 1299 NRPNSIDPAL---RRFGRFDREVDIGIPDATGRLEILQIHTKN-----MKLADDVDLEQV 1454
+S+ P L + F I PD R EIL KN M D+DL+++
Sbjct: 713 QSQHSLHPLLVSAQGIHLFQCVQHIQPPDQEQRCEILHNAIKNKLDCDMNSFTDLDLKRI 772
Query: 1455 ANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 1634
A ET G V D L A + + L +T DF+ AL
Sbjct: 773 AKETEGFVARDFIVLVDRAIHSRLSNQ-----------SVSTREELVLTTLDFQKALQGF 821
Query: 1635 NPSALRETVVEVPQ-VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYG 1811
P++LR + P+ + W+ IGGL +V++ L + +Q P ++P+ F + GVL YG
Sbjct: 822 VPASLRNVNLHKPRDLGWDHIGGLREVRQILMDTIQLPAKYPELFANLPIRQRTGVLLYG 881
Query: 1812 PPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDE 1991
PPG GKTLLA +A E FIS+KGPELL+ + G SE VR+IF +A+ A PC+LFFDE
Sbjct: 882 PPGTGKTLLAGVVARESGMXFISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDE 941
Query: 1992 LDSICQXXXXXXXXXXXXXXXVINQILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTG- 2168
+SI V+NQ+LT++DG+ + V+++ AT RPD+IDPA+L G
Sbjct: 942 FESIA---PRRGHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGR 998
Query: 2169 --------PPDQL 2183
PPDQ+
Sbjct: 999 LDKCVYCPPPDQV 1011
Score = 195 bits (495), Expect = 1e-49
Identities = 103/235 (43%), Positives = 150/235 (63%)
Frame = +3
Query: 855 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 1034
++G+D IGG R+ + + ++LP ++P LF + ++ G+LLYGPPGTGKTL+A VA
Sbjct: 836 DLGWDHIGGLREVRQILMDTIQLPAKYPELFANLPIRQRTGVLLYGPPGTGKTLLAGVVA 895
Query: 1035 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 1214
E+G F + GPE++SK G SE +R F A+ P I+F DE ++IAP+R +
Sbjct: 896 RESGMXFISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESIAPRRGHDNTG 955
Query: 1215 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 1394
V R+V+QLLT +DG++ V V+AAT+RP+ IDPAL R GR D+ V PD RLE
Sbjct: 956 VTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLE 1015
Query: 1395 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 1559
IL + + ++ LA+DVDL+ VA+ T GADL AL A L+A+ ++ L+D
Sbjct: 1016 ILNVLSASLPLAEDVDLQHVASLTDSFTGADLKALLYNAQLEALHGRLLSCGLQD 1070
>ref|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
Length = 480
Score = 200 bits (508), Expect = 3e-51
Identities = 99/242 (40%), Positives = 153/242 (63%), Gaps = 3/242 (1%)
Frame = +3
Query: 843 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 1022
E +V Y D+GGC++Q+ +++E+VE PL HP F +G++PP+G+LL+GPPGTGKTL A
Sbjct: 214 EEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCA 273
Query: 1023 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-- 1196
RAVAN T A F + G E++ K GE +R+ FE A +IF DE+DAI R
Sbjct: 274 RAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFD 333
Query: 1197 EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 1373
+ G+ E +R + +L+ +DG R ++ V+ ATNRP+++DPAL R GR DR+++ +P
Sbjct: 334 DGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 393
Query: 1374 DATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 1553
D GR I +IH ++M + D+ E +A GA++ ++C+EA + AIR + +
Sbjct: 394 DLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATE 453
Query: 1554 ED 1559
+D
Sbjct: 454 KD 455
Score = 150 bits (378), Expect = 4e-36
Identities = 75/220 (34%), Positives = 125/220 (56%), Gaps = 5/220 (2%)
Frame = +3
Query: 1542 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVV-----EVPQVTWEDIGGLE 1706
++DL D+ ++ + V +D ++ + P + TV E P VT+ D+GG +
Sbjct: 169 VVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCK 228
Query: 1707 DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 1886
+ +L+E+V+ P+ HP++F+ G+ P KGVL +GPPG GKTL A+A+AN A FI +
Sbjct: 229 EQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 288
Query: 1887 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSICQXXXXXXXXXXXXXXXVINQ 2066
G EL+ + GE VRE+F+ AR C++FFDE+D+I + +
Sbjct: 289 GSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLE 348
Query: 2067 ILTEMDGMSQKKNVFIIGATKRPDIIDPAILPTGPPDQLI 2186
++ ++DG + N+ ++ AT RPD +DPA++ G D+ I
Sbjct: 349 LINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKI 388
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 59,110,481
Number of extensions: 1694625
Number of successful extensions: 6606
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 6467
Number of HSP's successfully gapped: 68
Length of query: 762
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 655
Effective length of database: 8,679,953
Effective search space: 5685369215
Effective search space used: 5685369215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002267
(2286 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 527 e-147
>Sscrofa_Chr01
|| Length = 315321322
Score = 527 bits (266), Expect = e-147
Identities = 272/274 (99%)
Strand = Plus / Minus
Query: 1 gtcttcgcaaagcgtctgcagccgtcgtttgagttgtcgctgccgctgccccctcgcgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263395078 gtcttcgcaaagcgtctgcagccgtcgtttgagttgtcgctgccgctgccccctcgcgga 263395019
Query: 61 tcaggcgctagcgtcccccgcccgcctaccgccctggtgcctctgggaggaaacgaaagg 120
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 263395018 tcaggcgctagcgtcccccgcccgcttaccgccctggtgcctctgggaggaagcgaaagg 263394959
Query: 121 gaggccgtctgcgggtttgtcgttgccgctcaccctccgcccgggagagccgagcaccgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263394958 gaggccgtctgcgggtttgtcgttgccgctcaccctccgcccgggagagccgagcaccgg 263394899
Query: 181 ccgagtcggtcgcctgccacccttcgtagccgttacctgcgggccgccacagccgttggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263394898 ccgagtcggtcgcctgccacccttcgtagccgttacctgcgggccgccacagccgttggc 263394839
Query: 241 cgggagaagcgcgcgccatggcctccggagctga 274
||||||||||||||||||||||||||||||||||
Sbjct: 263394838 cgggagaagcgcgcgccatggcctccggagctga 263394805
Score = 527 bits (266), Expect = e-147
Identities = 272/274 (99%)
Strand = Plus / Plus
Query: 1 gtcttcgcaaagcgtctgcagccgtcgtttgagttgtcgctgccgctgccccctcgcgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263539986 gtcttcgcaaagcgtctgcagccgtcgtttgagttgtcgctgccgctgccccctcgcgga 263540045
Query: 61 tcaggcgctagcgtcccccgcccgcctaccgccctggtgcctctgggaggaaacgaaagg 120
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 263540046 tcaggcgctagcgtcccccgcccgcttaccgccctggtgcctctgggaggaagcgaaagg 263540105
Query: 121 gaggccgtctgcgggtttgtcgttgccgctcaccctccgcccgggagagccgagcaccgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263540106 gaggccgtctgcgggtttgtcgttgccgctcaccctccgcccgggagagccgagcaccgg 263540165
Query: 181 ccgagtcggtcgcctgccacccttcgtagccgttacctgcgggccgccacagccgttggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263540166 ccgagtcggtcgcctgccacccttcgtagccgttacctgcgggccgccacagccgttggc 263540225
Query: 241 cgggagaagcgcgcgccatggcctccggagctga 274
||||||||||||||||||||||||||||||||||
Sbjct: 263540226 cgggagaagcgcgcgccatggcctccggagctga 263540259
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Minus
Query: 1738 agtatcctgtggagcacccagacaaattcctcaagtttggcatgacaccctccaagggag 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263383537 agtatcctgtggagcacccagacaaattcctcaagtttggcatgacaccctccaagggag 263383478
Query: 1798 tgctattctatggacctcctggctgtgggaaaaccttgctggccaaagccattgctaatg 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263383477 tgctattctatggacctcctggctgtgggaaaaccttgctggccaaagccattgctaatg 263383418
Query: 1858 agtgccaggccaacttcatctccatcaaaggtcctgagctgctcaccatgtggtttgggg 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263383417 agtgccaggccaacttcatctccatcaaaggtcctgagctgctcaccatgtggtttgggg 263383358
Query: 1918 aatcagaggccaatgttagggaaatctttgacaagg 1953
||||||||||||||||||||||||||||||||||||
Sbjct: 263383357 aatcagaggccaatgttagggaaatctttgacaagg 263383322
Score = 381 bits (192), Expect = e-102
Identities = 276/306 (90%), Gaps = 1/306 (0%)
Strand = Plus / Minus
Query: 1951 aggcccgccaagctgccccctgtgtactgttctttgatgagctggattcaatttgccagg 2010
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 263383121 aggcccgccaagctgccccctgtgtactgttctttgatgagctggattcaattgccaagg 263383062
Query: 2011 cccgtggtggcaacattggagatggtggtggggctgccgaccgagtcatcaaccagatct 2070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263383061 cccgtggtggcaacattggagatggtggtggggctgccgaccgagtcatcaaccagatct 263383002
Query: 2071 tgacagaaatggatggcatgtcccnnnnnnnnnntgtgtttatcattggcgctaccaaac 2130
||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 263383001 tgacagaaatggatggcatgtccacaaaaaaaaatgtgtttatcattggcgctaccaacc 263382942
Query: 2131 ggcctgacatcattgatcctgccatcttgccgactggcccgcctgatcagctcatctaaa 2190
| |||||||||||||||||||||||||||| |||||| | ||||||||||||||| |
Sbjct: 263382941 gacctgacatcattgatcctgccatcttgcgacctggccgccttgatcagctcatctaca 263382882
Query: 2191 t-ccactttctgatgaaaagtcccgtgtcgccattctcaaggcccaactgcgccagttcc 2249
| |||||| ||||||| ||||||||||||||||||||||||||| | |||||| ||| ||
Sbjct: 263382881 tcccacttcctgatgagaagtcccgtgtcgccattctcaaggccaacctgcgcaagtccc 263382822
Query: 2250 ccgttg 2255
||||||
Sbjct: 263382821 ccgttg 263382816
Score = 349 bits (176), Expect = 4e-93
Identities = 176/176 (100%)
Strand = Plus / Minus
Query: 384 cagcccaagatggatgagctgcagttgttccgaggtgacacagtgttgctgaaaggaaag 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263390621 cagcccaagatggatgagctgcagttgttccgaggtgacacagtgttgctgaaaggaaag 263390562
Query: 444 aagaggcgggaagctgtgtgcattgtgctttctgatgacacatgttctgatgagaagatt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263390561 aagaggcgggaagctgtgtgcattgtgctttctgatgacacatgttctgatgagaagatt 263390502
Query: 504 cgaatgaatagagttgttcggaataaccttcgcgtacacctaggggatgtcatcag 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263390501 cgaatgaatagagttgttcggaataaccttcgcgtacacctaggggatgtcatcag 263390446
Score = 349 bits (176), Expect = 4e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 384 cagcccaagatggatgagctgcagttgttccgaggtgacacagtgttgctgaaaggaaag 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263544443 cagcccaagatggatgagctgcagttgttccgaggtgacacagtgttgctgaaaggaaag 263544502
Query: 444 aagaggcgggaagctgtgtgcattgtgctttctgatgacacatgttctgatgagaagatt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263544503 aagaggcgggaagctgtgtgcattgtgctttctgatgacacatgttctgatgagaagatt 263544562
Query: 504 cgaatgaatagagttgttcggaataaccttcgcgtacacctaggggatgtcatcag 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263544563 cgaatgaatagagttgttcggaataaccttcgcgtacacctaggggatgtcatcag 263544618
Score = 333 bits (168), Expect = 3e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 1449 caggtagccaatgaaactcatgggcatgttggtgctgacttagcagccctgtgctcagag 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263384179 caggtagccaatgaaactcatgggcatgttggtgctgacttagcagccctgtgctcagag 263384120
Query: 1509 gctgctctgcaagccatccgcaaaaagatggacctcattgacctagaagacgaaaccatc 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263384119 gctgctctgcaagccatccgcaaaaagatggacctcattgacctagaagacgaaaccatc 263384060
Query: 1569 gatgctgaggtcatgaactccctggcagttaccatggatgacttccga 1616
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263384059 gatgctgaggtcatgaactccctggcagttaccatggatgacttccga 263384012
Score = 293 bits (148), Expect = 2e-76
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 556 tcagcatccagccatgccctgatgtgaagtacggcaaacgtatccatgtactacccatcg 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263389359 tcagcatccagccatgccctgatgtgaagtacggcaaacgtatccatgtactacccatcg 263389300
Query: 616 atgacacagtggaaggcatcactggcaatctctttgaggtataccttaagccatacttcc 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263389299 atgacacagtggaaggcatcactggcaatctctttgaggtataccttaagccatacttcc 263389240
Query: 676 tggaagcttatcgacccatccggaaagg 703
||||||||||||||||||||||||||||
Sbjct: 263389239 tggaagcttatcgacccatccggaaagg 263389212
Score = 293 bits (148), Expect = 2e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 556 tcagcatccagccatgccctgatgtgaagtacggcaaacgtatccatgtactacccatcg 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263545705 tcagcatccagccatgccctgatgtgaagtacggcaaacgtatccatgtactacccatcg 263545764
Query: 616 atgacacagtggaaggcatcactggcaatctctttgaggtataccttaagccatacttcc 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263545765 atgacacagtggaaggcatcactggcaatctctttgaggtataccttaagccatacttcc 263545824
Query: 676 tggaagcttatcgacccatccggaaagg 703
||||||||||||||||||||||||||||
Sbjct: 263545825 tggaagcttatcgacccatccggaaagg 263545852
Score = 274 bits (138), Expect = 2e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 1203 acccatggggaggtggagcggcgtattgtatcacagttattgactctcatggatggccta 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263385171 acccatggggaggtggagcggcgtattgtatcacagttattgactctcatggatggccta 263385112
Query: 1263 aagcagagagcacatgtgattgtcatggcagcaaccaacagacccaacagcattgaccca 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263385111 aagcagagagcacatgtgattgtcatggcagcaaccaacagacccaacagcattgaccca 263385052
Query: 1323 gccctacgacgatttggt 1340
||||||||||||||||||
Sbjct: 263385051 gccctacgacgatttggt 263385034
Score = 268 bits (135), Expect = 1e-68
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 1068 ggtcctgagatcatgagcaagttggctggtgagtctgagagcaaccttcgtaaagccttt 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263385385 ggtcctgagatcatgagcaagttggctggtgagtctgagagcaaccttcgtaaagccttt 263385326
Query: 1128 gaggaggctgagaagaatgctccggctatcattttcattgatgagttggatgccatcgct 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263385325 gaggaggctgagaagaatgctccggctatcattttcattgatgagttggatgccatcgct 263385266
Query: 1188 cccaagagagagaaa 1202
|||||||||||||||
Sbjct: 263385265 cccaagagagagaaa 263385251
Score = 266 bits (134), Expect = 5e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 832 aggatgaagaagagtccttgaacgaagtgggctatgatgacattggtggctgcaggaaac 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263388056 aggatgaagaagagtccttgaacgaagtgggctatgatgacattggtggctgcaggaaac 263387997
Query: 892 agctagctcagataaaggagatggtggagctgcccttgagacatcctgccctctttaagg 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263387996 agctagctcagataaaggagatggtggagctgcccttgagacatcctgccctctttaagg 263387937
Query: 952 caattggtgtgaag 965
||||||||||||||
Sbjct: 263387936 caattggtgtgaag 263387923
Score = 266 bits (134), Expect = 5e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 701 aggagatattttccttgttcggggtgggatgcgtgcagtagagttcaaagtagtggagac 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263388660 aggagatattttccttgttcggggtgggatgcgtgcagtagagttcaaagtagtggagac 263388601
Query: 761 ggatcccagtccttactgcattgttgcaccagacacagtgatccactgtgaaggagagcc 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263388600 ggatcccagtccttactgcattgttgcaccagacacagtgatccactgtgaaggagagcc 263388541
Query: 821 tatcaaacgagagg 834
||||||||||||||
Sbjct: 263388540 tatcaaacgagagg 263388527
Score = 266 bits (134), Expect = 5e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 701 aggagatattttccttgttcggggtgggatgcgtgcagtagagttcaaagtagtggagac 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263546404 aggagatattttccttgttcggggtgggatgcgtgcagtagagttcaaagtagtggagac 263546463
Query: 761 ggatcccagtccttactgcattgttgcaccagacacagtgatccactgtgaaggagagcc 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263546464 ggatcccagtccttactgcattgttgcaccagacacagtgatccactgtgaaggagagcc 263546523
Query: 821 tatcaaacgagagg 834
||||||||||||||
Sbjct: 263546524 tatcaaacgagagg 263546537
Score = 266 bits (134), Expect = 5e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 832 aggatgaagaagagtccttgaacgaagtgggctatgatgacattggtggctgcaggaaac 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263547008 aggatgaagaagagtccttgaacgaagtgggctatgatgacattggtggctgcaggaaac 263547067
Query: 892 agctagctcagataaaggagatggtggagctgcccttgagacatcctgccctctttaagg 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263547068 agctagctcagataaaggagatggtggagctgcccttgagacatcctgccctctttaagg 263547127
Query: 952 caattggtgtgaag 965
||||||||||||||
Sbjct: 263547128 caattggtgtgaag 263547141
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 1617 tgggccctaagccagagcaacccatcagcacttcgggaaactgtggtagaggtgccacag 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263383918 tgggccctaagccagagcaacccatcagcacttcgggaaactgtggtagaggtgccacag 263383859
Query: 1677 gtgacctgggaggacattgggggcttggaggatgtcaaacgtgagcttcaggagctggtc 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263383858 gtgacctgggaggacattgggggcttggaggatgtcaaacgtgagcttcaggagctggtc 263383799
Query: 1737 cag 1739
|||
Sbjct: 263383798 cag 263383796
Score = 222 bits (112), Expect = 7e-55
Identities = 115/116 (99%)
Strand = Plus / Minus
Query: 1338 ggtcgctttgacagggaggtagatattggaattcctgatgctacaggacgcttggaaatt 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263384686 ggtcgctttgacagggaggtagatattggaattcctgatgctacaggacgcttggaaatt 263384627
Query: 1398 cttcagatccataccaagaatatgaagctggcagatgatgtggaccttgaacaggt 1453
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263384626 cttcaaatccataccaagaatatgaagctggcagatgatgtggaccttgaacaggt 263384571
Score = 222 bits (112), Expect = 7e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 275 ttccaaaggtgatgatttatcaacagccattcttaaacagaagaatcgtcccaatcggtt 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263390915 ttccaaaggtgatgatttatcaacagccattcttaaacagaagaatcgtcccaatcggtt 263390856
Query: 335 aattgttgatgaagccatcaatgaggacaacagtgtggtatctttgtcccag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263390855 aattgttgatgaagccatcaatgaggacaacagtgtggtatctttgtcccag 263390804
Score = 222 bits (112), Expect = 7e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 275 ttccaaaggtgatgatttatcaacagccattcttaaacagaagaatcgtcccaatcggtt 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263544149 ttccaaaggtgatgatttatcaacagccattcttaaacagaagaatcgtcccaatcggtt 263544208
Query: 335 aattgttgatgaagccatcaatgaggacaacagtgtggtatctttgtcccag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263544209 aattgttgatgaagccatcaatgaggacaacagtgtggtatctttgtcccag 263544260
Score = 212 bits (107), Expect = 6e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 964 agcctcctcggggaatcctgctctatggacctcccgggactgggaagaccctgattgctc 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263386117 agcctcctcggggaatcctgctctatggacctcccgggactgggaagaccctgattgctc 263386058
Query: 1024 gagctgtggcaaatgagactggagccttcttcttcttgatcaatggt 1070
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263386057 gagctgtggcaaatgagactggagccttcttcttcttgatcaatggt 263386011
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 60,410,621
Number of extensions: 339
Number of successful extensions: 339
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 21
Length of query: 2286
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2264
Effective length of database: 2,808,408,574
Effective search space: 6358237011536
Effective search space used: 6358237011536
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)