Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002268
(936 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073685.1| oviduct-specific glycoprotein [Bos taurus]. 394 e-110
Alignment gi|NP_777124.1| acidic mammalian chitinase precursor [Bos tauru... 281 4e-76
Alignment gi|NP_001073688.1| chitinase-3-like protein 1 [Bos taurus]. 244 6e-65
Alignment gi|XP_001255878.2| PREDICTED: chitinase-3-like protein 1-like [... 108 5e-24
>ref|NP_001073685.1| oviduct-specific glycoprotein [Bos taurus].
Length = 480
Score = 394 bits (1012), Expect = e-110
Identities = 191/243 (78%), Positives = 206/243 (84%)
Frame = +2
Query: 203 MNDSQIVAKDARDESIFYPEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKF 382
M+++QIV KD +DE I YPEFN+LKERN LKTLLSIGGWNFGT RFTTMLSTF+NRE+F
Sbjct: 1 MSNNQIVPKDPQDEKILYPEFNKLKERNRGLKTLLSIGGWNFGTVRFTTMLSTFSNRERF 60
Query: 383 IRSAIGLLRTHGFDGLDLFFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLL 562
+ S I LLRTHGFDGLDLFFLYPGLRGSP RDRW QLTMRPRLL
Sbjct: 61 VSSVIALLRTHGFDGLDLFFLYPGLRGSPARDRWTFVFLLEELLQAFKNEAQLTMRPRLL 120
Query: 563 LSAAVSADPHVIQKAYDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA 742
LSAAVS DPHV+QKAY+ RLLGRLLDFI+VLSYDLHGSWEKVTGHNSPLFSL DPKSSA
Sbjct: 121 LSAAVSGDPHVVQKAYEARLLGRLLDFISVLSYDLHGSWEKVTGHNSPLFSLPGDPKSSA 180
Query: 743 YTMNYWRKLGAPPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYY 922
Y MNYWR+LG PPEKLLMG PTYGRTF LLKAS+NEL A+AVGPASPGKYTKQAGFLAYY
Sbjct: 181 YAMNYWRQLGVPPEKLLMGLPTYGRTFHLLKASQNELRAQAVGPASPGKYTKQAGFLAYY 240
Query: 923 EVC 931
E+C
Sbjct: 241 EIC 243
>ref|NP_777124.1| acidic mammalian chitinase precursor [Bos taurus].
Length = 472
Score = 281 bits (720), Expect = 4e-76
Identities = 141/291 (48%), Positives = 188/291 (64%), Gaps = 5/291 (1%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A++LVCYF+NWA RPG S P ++DP LCTHL++AFA M++S+I + D ++ Y
Sbjct: 19 GSAYQLVCYFSNWAQYRPGLGSFKPDNIDPCLCTHLIYAFAGMSNSEITTIEWNDVAL-Y 77
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDL 436
FN LK++N +LK LL+IGGWNFGT+ FT M++T NR+ FI S I L +GFDGLD
Sbjct: 78 SSFNDLKKKNSQLKILLAIGGWNFGTAPFTAMVATPENRKTFISSVIKFLHQYGFDGLDF 137
Query: 437 FFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDV 616
+ YPG RGSP +D+ + T +PRLL++AAV+A IQ Y++
Sbjct: 138 DWEYPGFRGSPSQDKHLFTVLVQETREAFEQEAKQTNKPRLLVTAAVAAGISNIQAGYEI 197
Query: 617 RLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGAPP 781
L + LDFI+V++YD HGSWE TG NSPL+ D S+ Y MNYW+K GAP
Sbjct: 198 PQLSQYLDFIHVMTYDFHGSWEGYTGENSPLYKYPTDTGSNTYLNVEYAMNYWKKNGAPA 257
Query: 782 EKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
EKL++GFP YG F L AS N +GA G G YT++AGF AYYE+C+
Sbjct: 258 EKLIIGFPAYGHNFILRDASNNGIGAPTSGAGPAGPYTREAGFWAYYEICA 308
>ref|NP_001073688.1| chitinase-3-like protein 1 [Bos taurus].
Length = 391
Score = 244 bits (624), Expect = 6e-65
Identities = 127/289 (43%), Positives = 181/289 (62%), Gaps = 5/289 (1%)
Frame = +2
Query: 80 AAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFYP 259
AA+KL+CY+ +W+ R G S P +DPFLCTH++++FA++++++I + D ++ Y
Sbjct: 28 AAYKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWNDVTL-YD 86
Query: 260 EFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDLF 439
N LK RN LKTLLS+GGWNFG+ RF+ + S +R FI+S LRTHGFDGLDL
Sbjct: 87 TLNTLKNRNPNLKTLLSVGGWNFGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLA 146
Query: 440 FLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDVR 619
+LYPG RD+ + Q +LLLSAAV A I + YD+
Sbjct: 147 WLYPGW-----RDKRHLTTLVKEMKAEFVREAQAGTE-QLLLSAAVPAGKIAIDRGYDIA 200
Query: 620 LLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKS-----SAYTMNYWRKLGAPPE 784
+ R LDFI++L+YD HG+W + GH+SPLF +D S + Y ++Y +LGAP
Sbjct: 201 QISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSDRFSNADYAVSYMLRLGAPAN 260
Query: 785 KLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVC 931
KL+MG PT+GR++ L +SK ++GA GP PG++TK+ G LAYYE+C
Sbjct: 261 KLVMGIPTFGRSY-TLASSKTDVGAPISGPGIPGQFTKEKGILAYYEIC 308
>ref|XP_001255878.2| PREDICTED: chitinase-3-like protein 1-like [Bos taurus].
Length = 202
Score = 108 bits (271), Expect = 5e-24
Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 5/104 (4%)
Frame = +2
Query: 635 LDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKS-----SAYTMNYWRKLGAPPEKLLMG 799
LDFI++L+YD HG+W + GH+SPLF +D S + Y ++Y +LGAP KL+MG
Sbjct: 17 LDFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSDRFSNADYAVSYMLRLGAPANKLVMG 76
Query: 800 FPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVC 931
PT+GR++ L +SK ++GA GP PG++TK+ G LAYYE+C
Sbjct: 77 IPTFGRSY-TLASSKTDVGAPISGPGIPGQFTKEKGILAYYEIC 119
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,736,162
Number of extensions: 1128729
Number of successful extensions: 4149
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4126
Number of HSP's successfully gapped: 4
Length of query: 312
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,306,398
Effective search space: 3004343580
Effective search space used: 3004343580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002268
(936 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852238.1| PREDICTED: similar to Oviduct-specific glycopro... 441 e-124
Alignment gi|XP_537030.2| PREDICTED: similar to Acidic mammalian chitinas... 272 3e-73
Alignment gi|NP_001171278.1| chitinase-3-like protein 1 [Canis lupus fami... 245 4e-65
>ref|XP_852238.1| PREDICTED: similar to Oviduct-specific glycoprotein precursor
(Oviductal glycoprotein) (Oviductin) (Estrogen-dependent
oviduct protein) (Mucin 9) [Canis familiaris].
Length = 553
Score = 441 bits (1134), Expect = e-124
Identities = 214/290 (73%), Positives = 238/290 (82%)
Frame = +2
Query: 65 KHHNGAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDE 244
KHH+GAAHKLVCYFA+WA SRPGPAS+LP DLDPFLCTHL+FAFA+M ++QIVA ++
Sbjct: 14 KHHDGAAHKLVCYFASWAQSRPGPASVLPHDLDPFLCTHLIFAFATMENNQIVAMTSQKG 73
Query: 245 SIFYPEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFD 424
I YPEFN+LKERN +L+TLLSIGGW+FGTS+FTTMLST +NR+KFI S I LLRT+ FD
Sbjct: 74 KIVYPEFNKLKERNRELRTLLSIGGWDFGTSKFTTMLSTLSNRKKFINSVILLLRTYNFD 133
Query: 425 GLDLFFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQK 604
GLDLFFLYPGLRGSP DR +L RPRLLLSAAVS DP++IQ
Sbjct: 134 GLDLFFLYPGLRGSPMSDRRTFLLLIKELLFAFQNEVKLDTRPRLLLSAAVSGDPYIIQI 193
Query: 605 AYDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSAYTMNYWRKLGAPPE 784
AYDV LLG+LLDFINVLSYD HGSWEK TGHNSPLFSL DP SSAY MNYWRKLGAPPE
Sbjct: 194 AYDVHLLGKLLDFINVLSYDFHGSWEKFTGHNSPLFSLPGDPSSSAYAMNYWRKLGAPPE 253
Query: 785 KLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
KLLMGFPTYGRT+ LLKASKN L A+AVGPASPG YTK GFLAYYE+CS
Sbjct: 254 KLLMGFPTYGRTYHLLKASKNGLQAQAVGPASPGMYTKHPGFLAYYEICS 303
>ref|XP_537030.2| PREDICTED: similar to Acidic mammalian chitinase precursor (AMCase)
(TSA1902) [Canis familiaris].
Length = 493
Score = 272 bits (696), Expect = 3e-73
Identities = 139/292 (47%), Positives = 181/292 (61%), Gaps = 5/292 (1%)
Frame = +2
Query: 74 NGAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIF 253
+G+A++L CYF NWA RPG S P D+DP LCTHL++AFA M +++I + D+ F
Sbjct: 28 SGSAYQLTCYFTNWAQYRPGLGSFKPDDIDPCLCTHLIYAFAGMKNNEITTIEW-DDVTF 86
Query: 254 YPEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLD 433
Y FN LK +N +LKTLL+IGGWNFGT+ FT M+S+ NR+ FI S I LR + FDGLD
Sbjct: 87 YQAFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSSPENRQTFIASVIKFLRQYEFDGLD 146
Query: 434 LFFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYD 613
+ YPG RGSP +D+ Q +PRL+++AAV+A IQ YD
Sbjct: 147 FDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQEAQQINKPRLMITAAVAAGISNIQSGYD 206
Query: 614 VRLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGAP 778
+ L + LD+I+V++YD H SWE TG NSPL+ D S+A Y MNYW GAP
Sbjct: 207 IPQLSQYLDYIHVMTYDFHASWEGYTGENSPLYKYPSDTGSNAYLNVDYVMNYWMDNGAP 266
Query: 779 PEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
EKL++GFP YG TF L S + A G G YT+QAGF AYYE+C+
Sbjct: 267 AEKLIVGFPAYGHTFILSDPSNTGIDAPTSGAGPAGPYTRQAGFWAYYEICT 318
>ref|NP_001171278.1| chitinase-3-like protein 1 [Canis lupus familiaris].
Length = 384
Score = 245 bits (626), Expect = 4e-65
Identities = 130/289 (44%), Positives = 180/289 (62%), Gaps = 5/289 (1%)
Frame = +2
Query: 80 AAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFYP 259
+AHKLVCY+ NW+ R G S LP +DPFLCTH++++FA++++++I + D ++ Y
Sbjct: 20 SAHKLVCYYTNWSQYRKGDGSCLPDAIDPFLCTHVIYSFANISNNEIDTWEWNDVTL-YD 78
Query: 260 EFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDLF 439
N LK RN LKTLLS+GGW+FG+ RF+ + S +R FI+S LRTHGFDGLDL
Sbjct: 79 TLNTLKSRNPNLKTLLSVGGWSFGSQRFSKIASKTQSRRLFIKSVPPFLRTHGFDGLDLA 138
Query: 440 FLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDVR 619
+L+P RRD+ + Q LLLSAAVSA I YDV
Sbjct: 139 WLHP-----ERRDKRHFTTLVKEMKAEFAREAQAGAGQLLLLSAAVSAGKVTIDSGYDVA 193
Query: 620 LLGRLLDFINVLSYDLHGSWEKVTGHNSPLF-----SLSDDPKSSAYTMNYWRKLGAPPE 784
+ R LDFI+++SYD HG+W + TGH+SPLF + SD ++ Y ++Y +LG P
Sbjct: 194 QISRHLDFISLMSYDFHGAWRQTTGHHSPLFRGQMDASSDRFNNADYAVSYMLRLGVPAN 253
Query: 785 KLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVC 931
KLLMG PT+GR+F L +S+ +GA GP G++TK+ G LAYYE+C
Sbjct: 254 KLLMGIPTFGRSF-TLASSETGVGAPISGPGLSGQFTKEEGILAYYEIC 301
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,463,101
Number of extensions: 1162866
Number of successful extensions: 4002
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3985
Number of HSP's successfully gapped: 3
Length of query: 312
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 209
Effective length of database: 15,440,896
Effective search space: 3227147264
Effective search space used: 3227147264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002268
(936 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002548.3| oviduct-specific glycoprotein precursor [Homo s... 478 e-135
Alignment gi|NP_003456.1| chitotriosidase-1 precursor [Homo sapiens]. 285 5e-77
Alignment gi|NP_970615.2| acidic mammalian chitinase isoform c [Homo sapi... 266 2e-71
Alignment gi|NP_001267.2| chitinase-3-like protein 1 precursor [Homo sapi... 241 7e-64
Alignment gi|NP_003991.2| chitinase-3-like protein 2 isoform a [Homo sapi... 238 8e-63
Alignment gi|NP_001020368.1| chitinase-3-like protein 2 isoform b [Homo s... 238 8e-63
Alignment gi|NP_001020370.1| chitinase-3-like protein 2 isoform c [Homo s... 176 3e-44
Alignment gi|NP_068569.2| acidic mammalian chitinase isoform a [Homo sapi... 168 7e-42
>ref|NP_002548.3| oviduct-specific glycoprotein precursor [Homo sapiens].
Length = 678
Score = 478 bits (1229), Expect = e-135
Identities = 229/290 (78%), Positives = 245/290 (84%)
Frame = +2
Query: 65 KHHNGAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDE 244
KHH+GAAHKLVCYF NWA SRPGPASILP DLDPFLCTHL+FAFASMN++QIVAKD +DE
Sbjct: 15 KHHDGAAHKLVCYFTNWAHSRPGPASILPHDLDPFLCTHLIFAFASMNNNQIVAKDLQDE 74
Query: 245 SIFYPEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFD 424
I YPEFN+LKERN +LKTLLSIGGWNFGTSRFTTMLSTF NREKFI S I LLRTH FD
Sbjct: 75 KILYPEFNKLKERNRELKTLLSIGGWNFGTSRFTTMLSTFANREKFIASVISLLRTHDFD 134
Query: 425 GLDLFFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQK 604
GLDLFFLYPGLRGSP DRW LTMRPRLLLSAAVS PH++Q
Sbjct: 135 GLDLFFLYPGLRGSPMHDRWTFLFLIEELLFAFRKEALLTMRPRLLLSAAVSGVPHIVQT 194
Query: 605 AYDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSAYTMNYWRKLGAPPE 784
+YDVR LGRLLDFINVLSYDLHGSWE+ TGHNSPLFSL +DPKSSAY MNYWRKLGAP E
Sbjct: 195 SYDVRFLGRLLDFINVLSYDLHGSWERFTGHNSPLFSLPEDPKSSAYAMNYWRKLGAPSE 254
Query: 785 KLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
KL+MG PTYGRTFRLLKASKN L A A+GPASPGKYTKQ GFLAY+E+CS
Sbjct: 255 KLIMGIPTYGRTFRLLKASKNGLQARAIGPASPGKYTKQEGFLAYFEICS 304
>ref|NP_003456.1| chitotriosidase-1 precursor [Homo sapiens].
Length = 466
Score = 285 bits (728), Expect = 5e-77
Identities = 142/291 (48%), Positives = 187/291 (64%), Gaps = 5/291 (1%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A KLVCYF NWA R G A LP+DLDP LCTHL++AFA M + Q+ + DE++ Y
Sbjct: 19 GSAAKLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETL-Y 77
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDL 436
EFN LK+ N KLKTLL+IGGWNFGT +FT M++T NR+ F+ SAI LR + FDGLDL
Sbjct: 78 QEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDL 137
Query: 437 FFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDV 616
+ YPG +GSP D+ Q + + RLLLSAAV A + Y+V
Sbjct: 138 DWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEV 197
Query: 617 RLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGAPP 781
+ + LDF+N+++YD HGSWEKVTGHNSPL+ ++ ++A + W + G P
Sbjct: 198 DKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPA 257
Query: 782 EKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
KL++G PTYGR+F L +S +GA A G +PG +TK+ G LAYYEVCS
Sbjct: 258 SKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS 308
>ref|NP_970615.2| acidic mammalian chitinase isoform c [Homo sapiens].
Length = 476
Score = 266 bits (680), Expect = 2e-71
Identities = 134/291 (46%), Positives = 181/291 (62%), Gaps = 5/291 (1%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A++L CYF NWA RPG +P ++DP LCTHL++AFA +++I + D ++ Y
Sbjct: 19 GSAYQLTCYFTNWAQYRPGLGRFMPDNIDPCLCTHLIYAFAGRQNNEITTIEWNDVTL-Y 77
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDL 436
FN LK +N +LKTLL+IGGWNFGT+ FT M+ST NR+ FI S I LR + FDGLD
Sbjct: 78 QAFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDF 137
Query: 437 FFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDV 616
+ YPG RGSP +D+ + +PRL+++AAV+A IQ Y++
Sbjct: 138 DWEYPGSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEI 197
Query: 617 RLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGAPP 781
L + LD+I+V++YDLHGSWE TG NSPL+ D S+A Y MNYW+ GAP
Sbjct: 198 PQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPA 257
Query: 782 EKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
EKL++GFPTYG F L S +GA G G Y K++G AYYE+C+
Sbjct: 258 EKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICT 308
>ref|NP_001267.2| chitinase-3-like protein 1 precursor [Homo sapiens].
Length = 383
Score = 241 bits (615), Expect = 7e-64
Identities = 127/289 (43%), Positives = 180/289 (62%), Gaps = 5/289 (1%)
Frame = +2
Query: 80 AAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFYP 259
+A+KLVCY+ +W+ R G S P LD FLCTH++++FA++++ I + D ++ Y
Sbjct: 20 SAYKLVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANISNDHIDTWEWNDVTL-YG 78
Query: 260 EFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDLF 439
N LK RN LKTLLS+GGWNFG+ RF+ + S +R FI+S LRTHGFDGLDL
Sbjct: 79 MLNTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLA 138
Query: 440 FLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDVR 619
+LYPG RRD+ + Q + +LLLSAA+SA I +YD+
Sbjct: 139 WLYPG-----RRDKQHFTTLIKEMKAEFIKEAQ-PGKKQLLLSAALSAGKVTIDSSYDIA 192
Query: 620 LLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDP-----KSSAYTMNYWRKLGAPPE 784
+ + LDFI++++YD HG+W TGH+SPLF +D ++ Y + Y +LGAP
Sbjct: 193 KISQHLDFISIMTYDFHGAWRGTTGHHSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPAS 252
Query: 785 KLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVC 931
KL+MG PT+GR+F L +S+ +GA GP PG++TK+AG LAYYE+C
Sbjct: 253 KLVMGIPTFGRSF-TLASSETGVGAPISGPGIPGRFTKEAGTLAYYEIC 300
>ref|NP_003991.2| chitinase-3-like protein 2 isoform a [Homo sapiens].
Length = 390
Score = 238 bits (606), Expect = 8e-63
Identities = 126/292 (43%), Positives = 177/292 (60%), Gaps = 7/292 (2%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A+KLVCYF NW+ R P P ++DPFLC+HL+++FAS+ +++++ KD + E + Y
Sbjct: 24 GSAYKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVIIKD-KSEVMLY 82
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDL 436
N LK +N KLK LLSIGG+ FG+ F M+ + T+R +FI S I LR H FDGLD+
Sbjct: 83 QTINSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDV 142
Query: 437 FFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDV 616
++YP +++ + + + RLLL+A VSA +I +Y V
Sbjct: 143 SWIYP-----DQKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQV 197
Query: 617 RLLGRLLDFINVLSYDLHGSWEK--VTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGA 775
L + LDFIN+LS+D HGSWEK +TGHNSPL D S+ Y + YW G
Sbjct: 198 EKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGM 257
Query: 776 PPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVC 931
P EK++MG PTYG +F L A + +GA A GP + G T+ +GFLAYYE+C
Sbjct: 258 PSEKVVMGIPTYGHSFTLASA-ETTVGAPASGPGAAGPITESSGFLAYYEIC 308
>ref|NP_001020368.1| chitinase-3-like protein 2 isoform b [Homo sapiens].
Length = 380
Score = 238 bits (606), Expect = 8e-63
Identities = 126/292 (43%), Positives = 177/292 (60%), Gaps = 7/292 (2%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A+KLVCYF NW+ R P P ++DPFLC+HL+++FAS+ +++++ KD + E + Y
Sbjct: 14 GSAYKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVIIKD-KSEVMLY 72
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDL 436
N LK +N KLK LLSIGG+ FG+ F M+ + T+R +FI S I LR H FDGLD+
Sbjct: 73 QTINSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDV 132
Query: 437 FFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDV 616
++YP +++ + + + RLLL+A VSA +I +Y V
Sbjct: 133 SWIYP-----DQKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQV 187
Query: 617 RLLGRLLDFINVLSYDLHGSWEK--VTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGA 775
L + LDFIN+LS+D HGSWEK +TGHNSPL D S+ Y + YW G
Sbjct: 188 EKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGM 247
Query: 776 PPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVC 931
P EK++MG PTYG +F L A + +GA A GP + G T+ +GFLAYYE+C
Sbjct: 248 PSEKVVMGIPTYGHSFTLASA-ETTVGAPASGPGAAGPITESSGFLAYYEIC 298
>ref|NP_001020370.1| chitinase-3-like protein 2 isoform c [Homo sapiens].
Length = 311
Score = 176 bits (446), Expect = 3e-44
Identities = 100/235 (42%), Positives = 135/235 (57%), Gaps = 7/235 (2%)
Frame = +2
Query: 248 IFYPEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDG 427
+ Y N LK +N KLK LLSIGG+ FG+ F M+ + T+R +FI S I LR H FDG
Sbjct: 1 MLYQTINSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDG 60
Query: 428 LDLFFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKA 607
LD+ ++YP +++ + + + RLLL+A VSA +I +
Sbjct: 61 LDVSWIYP-----DQKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNS 115
Query: 608 YDVRLLGRLLDFINVLSYDLHGSWEK--VTGHNSPLFSLSDDPKSSA-----YTMNYWRK 766
Y V L + LDFIN+LS+D HGSWEK +TGHNSPL D S+ Y + YW
Sbjct: 116 YQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIH 175
Query: 767 LGAPPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVC 931
G P EK++MG PTYG +F L A + +GA A GP + G T+ +GFLAYYE+C
Sbjct: 176 KGMPSEKVVMGIPTYGHSFTLASA-ETTVGAPASGPGAAGPITESSGFLAYYEIC 229
>ref|NP_068569.2| acidic mammalian chitinase isoform a [Homo sapiens].
Length = 368
Score = 168 bits (425), Expect = 7e-42
Identities = 88/200 (44%), Positives = 117/200 (58%), Gaps = 5/200 (2%)
Frame = +2
Query: 350 MLSTFTNREKFIRSAIGLLRTHGFDGLDLFFLYPGLRGSPRRDRWNXXXXXXXXXXXXXX 529
M+ST NR+ FI S I LR + FDGLD + YPG RGSP +D+
Sbjct: 1 MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQ 60
Query: 530 XXQLTMRPRLLLSAAVSADPHVIQKAYDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPL 709
+ +PRL+++AAV+A IQ Y++ L + LD+I+V++YDLHGSWE TG NSPL
Sbjct: 61 EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPL 120
Query: 710 FSLSDDPKSSAY-----TMNYWRKLGAPPEKLLMGFPTYGRTFRLLKASKNELGAEAVGP 874
+ D S+AY MNYW+ GAP EKL++GFPTYG F L S +GA G
Sbjct: 121 YKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGA 180
Query: 875 ASPGKYTKQAGFLAYYEVCS 934
G Y K++G AYYE+C+
Sbjct: 181 GPAGPYAKESGIWAYYEICT 200
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,681,282
Number of extensions: 1140002
Number of successful extensions: 4064
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4026
Number of HSP's successfully gapped: 8
Length of query: 312
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,934,836
Effective search space: 3136315560
Effective search space used: 3136315560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002268
(936 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031722.1| oviduct-specific glycoprotein precursor [Mus mu... 440 e-124
Alignment gi|NP_075675.2| acidic mammalian chitinase precursor [Mus muscu... 285 3e-77
Alignment gi|NP_082255.1| chitotriosidase-1 precursor [Mus musculus]. 269 2e-72
Alignment gi|NP_848499.1| hypothetical protein LOC229688 [Mus musculus]. 248 4e-66
Alignment gi|NP_031721.2| chitinase-3-like protein 1 [Mus musculus]. 236 2e-62
Alignment gi|NP_660108.2| chitinase-3-like protein 4 precursor [Mus muscu... 232 3e-61
Alignment gi|XP_003084583.1| PREDICTED: acidic mammalian chitinase [Mus m... 231 8e-61
Alignment gi|XP_003086365.1| PREDICTED: acidic mammalian chitinase [Mus m... 231 8e-61
Alignment gi|NP_034022.2| chitinase-3-like protein 3 precursor [Mus muscu... 228 5e-60
Alignment gi|XP_003084598.1| PREDICTED: chitinase-3-like protein 4-like [... 216 2e-56
>ref|NP_031722.1| oviduct-specific glycoprotein precursor [Mus musculus].
Length = 721
Score = 440 bits (1131), Expect = e-124
Identities = 214/304 (70%), Positives = 235/304 (77%)
Frame = +2
Query: 23 MGKXXXXXXXXXXXKHHNGAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFAS 202
MG+ KH +G A+KLVCYF NWA SRPGPASI+P DLDPFLCTHL+FAFAS
Sbjct: 1 MGRLLLLAGLVLLMKHSDGTAYKLVCYFTNWAHSRPGPASIMPHDLDPFLCTHLIFAFAS 60
Query: 203 MNDSQIVAKDARDESIFYPEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKF 382
M+++QIVAK+ +DE++ YPEFN+LKERN +LKTLLSIGGWNFGTSRFT MLST NREKF
Sbjct: 61 MSNNQIVAKNLQDENVLYPEFNKLKERNRELKTLLSIGGWNFGTSRFTAMLSTLANREKF 120
Query: 383 IRSAIGLLRTHGFDGLDLFFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLL 562
I S I LR HGFDGLDLFFLYPGLRGSP DRWN LT PRLL
Sbjct: 121 IDSVISFLRIHGFDGLDLFFLYPGLRGSPPHDRWNFLFLIEELQFAFEREALLTQHPRLL 180
Query: 563 LSAAVSADPHVIQKAYDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA 742
LSAAVS P +I +YD LLGR LDFINVLSYDLHGSWEK TGHNSPLFSL +D KSSA
Sbjct: 181 LSAAVSGIPSIIHTSYDALLLGRRLDFINVLSYDLHGSWEKFTGHNSPLFSLPEDSKSSA 240
Query: 743 YTMNYWRKLGAPPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYY 922
Y MNYWRKLG P +KL+MGFPTYGR F LLK SKN L ++GPASPGKYTKQAGFLAYY
Sbjct: 241 YAMNYWRKLGTPADKLIMGFPTYGRNFYLLKESKNGLQTASMGPASPGKYTKQAGFLAYY 300
Query: 923 EVCS 934
EVCS
Sbjct: 301 EVCS 304
>ref|NP_075675.2| acidic mammalian chitinase precursor [Mus musculus].
Length = 473
Score = 285 bits (730), Expect = 3e-77
Identities = 145/291 (49%), Positives = 187/291 (64%), Gaps = 5/291 (1%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A+ L+CYF NWA RPG S P D++P LCTHL++AFA M +++I + D ++ Y
Sbjct: 19 GSAYNLICYFTNWAQYRPGLGSFKPDDINPCLCTHLIYAFAGMQNNEITTIEWNDVTL-Y 77
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDL 436
FN LK RN KLKTLL+IGGWNFGT+ FTTM+ST NR+ FI S I LR +GFDGLDL
Sbjct: 78 KAFNDLKNRNSKLKTLLAIGGWNFGTAPFTTMVSTSQNRQTFITSVIKFLRQYGFDGLDL 137
Query: 437 FFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDV 616
+ YPG RGSP +D+ + RPRL+++AAV+ IQ Y++
Sbjct: 138 DWEYPGSRGSPPQDKHLFTVLVKEMREAFEQEAIESNRPRLMVTAAVAGGISNIQAGYEI 197
Query: 617 RLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGAPP 781
L + LDFI+V++YDLHGSWE TG NSPL+ + S+A Y MNYW+ GAP
Sbjct: 198 PELSKYLDFIHVMTYDLHGSWEGYTGENSPLYKYPTETGSNAYLNVDYVMNYWKNNGAPA 257
Query: 782 EKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
EKL++GFP YG TF L S N +GA G G YT+QAGF AYYE+C+
Sbjct: 258 EKLIVGFPEYGHTFILRNPSDNGIGAPTSGDGPAGPYTRQAGFWAYYEICT 308
>ref|NP_082255.1| chitotriosidase-1 precursor [Mus musculus].
Length = 464
Score = 269 bits (688), Expect = 2e-72
Identities = 134/291 (46%), Positives = 182/291 (62%), Gaps = 5/291 (1%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A KLVCY NW+ R PRD+DP LCTH++FAFA M++ Q+ + DE + Y
Sbjct: 19 GSAAKLVCYLTNWSQYRTEAVRFFPRDVDPNLCTHVIFAFAGMDNHQLSTVEHNDE-LLY 77
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDL 436
E N LK +N KLKTLL++GGW FGT +FT M++T +NR+ F++SA+ LRT GFDGLDL
Sbjct: 78 QELNSLKTKNPKLKTLLAVGGWTFGTQKFTDMVATASNRQTFVKSALSFLRTQGFDGLDL 137
Query: 437 FFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDV 616
+ +PG RGSP D+ Q + + RLLL+AAV +D ++ Y+V
Sbjct: 138 DWEFPGGRGSPTVDKERFTALIQDLAKAFQEEAQSSGKERLLLTAAVPSDRGLVDAGYEV 197
Query: 617 RLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGAPP 781
+ + LDFIN+++YD H S EK TGHNSPL+ + ++A + W + G P
Sbjct: 198 DKIAQSLDFINLMAYDFHSSLEKTTGHNSPLYKRQGESGAAAEQNVDAAVTLWLQKGTPA 257
Query: 782 EKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
KL++G PTYGR+F L +S N +GA A GP +PG YTK G LAYYE CS
Sbjct: 258 SKLILGMPTYGRSFTLASSSDNGVGAPATGPGAPGPYTKDKGVLAYYEACS 308
>ref|NP_848499.1| hypothetical protein LOC229688 [Mus musculus].
Length = 440
Score = 248 bits (634), Expect = 4e-66
Identities = 131/291 (45%), Positives = 174/291 (59%), Gaps = 5/291 (1%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A++L+CYF NW +P I D+DP LCTHL+++FA + ++ R E Y
Sbjct: 36 GSAYQLMCYFNNWPQHQPDVRDIKHEDIDPCLCTHLIYSFAGIWENNFTMTK-RKELDDY 94
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDL 436
FN LK+RN KLKTLLSIG WNFG F TM+ST NR FI S I LR +GFDGL+L
Sbjct: 95 KGFNDLKKRNNKLKTLLSIGCWNFGDGSFITMVSTPENRHSFITSIIKFLRKYGFDGLNL 154
Query: 437 FFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDV 616
+ YPG GSP RD+ +PRL+++AAV+ IQ Y++
Sbjct: 155 AWQYPGCYGSPPRDKHLFTILMHEIRKAFEKEVSKNKKPRLMVTAAVAGVISTIQFGYEI 214
Query: 617 RLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGAPP 781
L + LD+I V++YDLHGSW+ TG NSPL+ + A Y M+ W+K GA P
Sbjct: 215 PQLSQSLDYIQVMTYDLHGSWDGYTGENSPLYKSPIETGVKAFHNIKYIMDNWKKKGASP 274
Query: 782 EKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
EKL++GFP YG TF L ++K E+GA + PG +TKQ GF AYYE+C+
Sbjct: 275 EKLIVGFPAYGHTFILSDSTKTEIGAPSNRGGHPGPHTKQTGFWAYYEICT 325
>ref|NP_031721.2| chitinase-3-like protein 1 [Mus musculus].
Length = 389
Score = 236 bits (601), Expect = 2e-62
Identities = 124/289 (42%), Positives = 176/289 (60%), Gaps = 5/289 (1%)
Frame = +2
Query: 80 AAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFYP 259
+A+KLVCYF +W+ R G S LP + PFLCTH++++FA+++ +++ ++ Y
Sbjct: 28 SAYKLVCYFTSWSQYREGVGSFLPDAIQPFLCTHIIYSFANISSDNMLSTWEWNDESNYD 87
Query: 260 EFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDLF 439
+ N+LK RN LKTLLS+GGW FG RF+ + S R F+RS LR++GFDGLDL
Sbjct: 88 KLNKLKTRNTNLKTLLSVGGWKFGEKRFSEIASNTERRTAFVRSVAPFLRSYGFDGLDLA 147
Query: 440 FLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDVR 619
+LYP L RD+ Q R +LLLSAA+SA I YD+
Sbjct: 148 WLYPRL-----RDKQYFSTLIKELNAEFTKEVQ-PGREKLLLSAALSAGKVAIDTGYDIA 201
Query: 620 LLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSAYT-----MNYWRKLGAPPE 784
+ + LDFIN+++YD HG W ++TGH+SPLF D + Y+ + Y +LGA
Sbjct: 202 QIAQHLDFINLMTYDFHGVWRQITGHHSPLFQGQKDTRFDRYSNVNYAVQYMIRLGAQAS 261
Query: 785 KLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVC 931
KLLMG PT+G++F L +S+N+LGA G PG++TK+AG LAYYE+C
Sbjct: 262 KLLMGIPTFGKSF-TLASSENQLGAPISGEGLPGRFTKEAGTLAYYEIC 309
>ref|NP_660108.2| chitinase-3-like protein 4 precursor [Mus musculus].
Length = 402
Score = 232 bits (592), Expect = 3e-61
Identities = 125/294 (42%), Positives = 173/294 (58%), Gaps = 8/294 (2%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIV---AKDARDES 247
G++++L+CY+ +WA RP S P ++DP LCTHL++AFA M +++I +D RD
Sbjct: 19 GSSYQLMCYYTSWAKDRPTEGSFKPGNIDPCLCTHLIYAFAGMKNNEITYLSEQDLRD-- 76
Query: 248 IFYPEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDG 427
Y N LK+RN +LKTLL+IGGW FG + F++M+ST NR+ FI+S I LR + FDG
Sbjct: 77 --YEALNGLKDRNTELKTLLAIGGWKFGPAPFSSMVSTPQNRQTFIKSVIRFLRQYNFDG 134
Query: 428 LDLFFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKA 607
L+L + YPG RGSP +D+ L PRLLL++ + VI+
Sbjct: 135 LNLDWQYPGSRGSPPKDKHLFSVLVQEMRKAFEEESTLNHIPRLLLTSTGAGFIDVIKSG 194
Query: 608 YDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLG 772
Y + L + LD+I V++YDLH TG NSPL+ D SA + YW+ G
Sbjct: 195 YKIPELSQSLDYIQVMTYDLHDPKNGYTGENSPLYKSPYDIGKSADLNVDSIITYWKDHG 254
Query: 773 APPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
A EKL++GFP YG TF L SKN +G V PGKYT + G LAY+E+C+
Sbjct: 255 AASEKLIVGFPAYGHTFILSDPSKNGIGDPTVSAGPPGKYTNEQGLLAYFEICT 308
>ref|XP_003084583.1| PREDICTED: acidic mammalian chitinase [Mus musculus].
Length = 431
Score = 231 bits (588), Expect = 8e-61
Identities = 122/291 (41%), Positives = 174/291 (59%), Gaps = 5/291 (1%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A++L+CY+ N A +RP S P D+DP LCTHL++AFA M ++++ + D + Y
Sbjct: 19 GSAYQLMCYYNNVAQNRPKLGSFNPADIDPCLCTHLIYAFAGMQNNKVTMRSMNDLTD-Y 77
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDL 436
N LK RN +LKTLL+IGG +FG + F+ M+ST N++ FI SAI LR +GFDGL+L
Sbjct: 78 QALNTLKSRNVQLKTLLAIGGRDFGPAPFSAMVSTPHNQQTFINSAIKFLRQYGFDGLNL 137
Query: 437 FFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDV 616
+ +PG RGSP RD+ PRL+++A V+ IQ Y++
Sbjct: 138 DWQFPGSRGSPSRDKHLFTVLVQKIREAFELEAIENKSPRLMVTATVAGVISTIQSGYEI 197
Query: 617 RLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGAPP 781
L LD+I V++Y+LHGS + TG NSPL+ +D + Y M YW + GA P
Sbjct: 198 PQLSHFLDYIQVMTYNLHGSQDGYTGENSPLYKSLNDTGINTLLNVDYIMTYWNENGAAP 257
Query: 782 EKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
EKL++GFP YG+TF L S N + A + G YT+++G AYYE+CS
Sbjct: 258 EKLIVGFPAYGQTFTLSDPSNNGISAPTASAGTLGPYTEESGTWAYYEICS 308
>ref|XP_003086365.1| PREDICTED: acidic mammalian chitinase [Mus musculus].
Length = 431
Score = 231 bits (588), Expect = 8e-61
Identities = 122/291 (41%), Positives = 174/291 (59%), Gaps = 5/291 (1%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A++L+CY+ N A +RP S P D+DP LCTHL++AFA M ++++ + D + Y
Sbjct: 19 GSAYQLMCYYNNVAQNRPKLGSFNPADIDPCLCTHLIYAFAGMQNNKVTMRSMNDLTD-Y 77
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDL 436
N LK RN +LKTLL+IGG +FG + F+ M+ST N++ FI SAI LR +GFDGL+L
Sbjct: 78 QALNTLKSRNVQLKTLLAIGGRDFGPAPFSAMVSTPHNQQTFINSAIKFLRQYGFDGLNL 137
Query: 437 FFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDV 616
+ +PG RGSP RD+ PRL+++A V+ IQ Y++
Sbjct: 138 DWQFPGSRGSPSRDKHLFTVLVQKIREAFELEAIENKSPRLMVTATVAGVISTIQSGYEI 197
Query: 617 RLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGAPP 781
L LD+I V++Y+LHGS + TG NSPL+ +D + Y M YW + GA P
Sbjct: 198 PQLSHFLDYIQVMTYNLHGSQDGYTGENSPLYKSLNDTGINTLLNVDYIMTYWNENGAAP 257
Query: 782 EKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
EKL++GFP YG+TF L S N + A + G YT+++G AYYE+CS
Sbjct: 258 EKLIVGFPAYGQTFTLSDPSNNGISAPTASAGTLGPYTEESGTWAYYEICS 308
>ref|NP_034022.2| chitinase-3-like protein 3 precursor [Mus musculus].
Length = 398
Score = 228 bits (581), Expect = 5e-60
Identities = 124/294 (42%), Positives = 174/294 (59%), Gaps = 8/294 (2%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIV---AKDARDES 247
G++++L+CY+ +WA RP S P ++DP LCTHL++AFA M +++I +D RD
Sbjct: 19 GSSYQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTHEQDLRD-- 76
Query: 248 IFYPEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDG 427
Y N LK++N +LKTLL+IGGW FG + F+ M+ST NR+ FI+S I LR + FDG
Sbjct: 77 --YEALNGLKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDG 134
Query: 428 LDLFFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKA 607
L+L + YPG RGSP +D+ PRLLL++ + VI+
Sbjct: 135 LNLDWQYPGSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSG 194
Query: 608 YDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLG 772
Y + L + LD+I V++YDLH + TG NSPL+ D SA ++YW+ G
Sbjct: 195 YKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHG 254
Query: 773 APPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
A EKL++GFP YG TF L SK +GA + PGKYT ++G LAYYEVC+
Sbjct: 255 AASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCT 308
>ref|XP_003084598.1| PREDICTED: chitinase-3-like protein 4-like [Mus musculus].
Length = 422
Score = 216 bits (551), Expect = 2e-56
Identities = 120/294 (40%), Positives = 168/294 (57%), Gaps = 8/294 (2%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIV---AKDARDES 247
G++++L+CY+ +WA RP S P +DP LCTHL++AFA M +++I +D RD
Sbjct: 39 GSSYQLMCYYTSWAKDRPRQGSFKPGTIDPCLCTHLIYAFAGMQNNEITYTHEQDLRD-- 96
Query: 248 IFYPEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDG 427
Y N LK+RN +LKTLL+IGGW FG + F+ M+ST N + FI+S I LR + FDG
Sbjct: 97 --YETLNGLKDRNTELKTLLAIGGWKFGPAPFSAMVSTPQNHKTFIQSVIKFLRQYKFDG 154
Query: 428 LDLFFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKA 607
L+L + +PG RGS +D+ + PRLLL++ + VI+
Sbjct: 155 LNLDWQFPGSRGSDPKDKPLFSVLVQEMRKAFEEESTVKHIPRLLLTSTGAGIIDVIKSG 214
Query: 608 YDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLG 772
Y + L + LD+I V++YDLH + TG NS L+ D SA ++YW+ G
Sbjct: 215 YKIPELSQSLDYIQVMTYDLHDPKDDNTGENSSLYKSPFDTGKSADLNVDSIISYWKDHG 274
Query: 773 APPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
A EKL++GFP YG TF L SK +GA V PG YT G LAYYE+C+
Sbjct: 275 AASEKLIVGFPAYGHTFILSDPSKTGIGAPTVSAGPPGTYTHVPGLLAYYEICT 328
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,361,394
Number of extensions: 954512
Number of successful extensions: 3287
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3251
Number of HSP's successfully gapped: 11
Length of query: 312
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 211
Effective length of database: 12,583,923
Effective search space: 2655207753
Effective search space used: 2655207753
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002268
(936 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355294.1| PREDICTED: oviduct-specific glycoprotein-lik... 565 e-161
Alignment gi|NP_999235.1| oviduct-specific glycoprotein precursor [Sus sc... 559 e-160
Alignment gi|XP_003355295.1| PREDICTED: oviduct-specific glycoprotein-lik... 550 e-157
Alignment gi|XP_001929072.1| PREDICTED: acidic mammalian chitinase [Sus s... 283 7e-77
Alignment gi|XP_003130344.1| PREDICTED: chitotriosidase-1 [Sus scrofa]. 275 2e-74
Alignment gi|NP_001001540.1| chitinase-3-like protein 1 precursor [Sus sc... 248 3e-66
Alignment gi|XP_003355308.1| PREDICTED: chitinase-3-like protein 2 [Sus s... 233 1e-61
Alignment gi|XP_003355300.1| PREDICTED: chitinase-3-like protein 2 [Sus s... 233 1e-61
Alignment gi|XP_003357583.1| PREDICTED: chitinase-3-like protein 1-like [... 186 2e-47
Alignment gi|XP_001926544.3| PREDICTED: acidic mammalian chitinase-like [... 115 3e-26
>ref|XP_003355294.1| PREDICTED: oviduct-specific glycoprotein-like isoform 1 [Sus
scrofa].
Length = 529
Score = 565 bits (1457), Expect = e-161
Identities = 279/306 (91%), Positives = 279/306 (91%)
Frame = +2
Query: 17 MAMGKXXXXXXXXXXXKHHNGAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAF 196
MAMGK KHHNGAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAF
Sbjct: 1 MAMGKLLLWVGLVLVLKHHNGAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAF 60
Query: 197 ASMNDSQIVAKDARDESIFYPEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNRE 376
ASMNDSQIVAKDARDESIFYPEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNRE
Sbjct: 61 ASMNDSQIVAKDARDESIFYPEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNRE 120
Query: 377 KFIRSAIGLLRTHGFDGLDLFFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPR 556
KFIRSAIGLLRTHGFDGLDLFFLYPGLRGSPRRDRWN QLTMRPR
Sbjct: 121 KFIRSAIGLLRTHGFDGLDLFFLYPGLRGSPRRDRWNFLFLLEELLLAFRREAQLTMRPR 180
Query: 557 LLLSAAVSADPHVIQKAYDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKS 736
LLLSAAVSADPHVIQKAYDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKS
Sbjct: 181 LLLSAAVSADPHVIQKAYDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKS 240
Query: 737 SAYTMNYWRKLGAPPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLA 916
SAYTMNYWRKLGAPPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLA
Sbjct: 241 SAYTMNYWRKLGAPPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLA 300
Query: 917 YYEVCS 934
YYEVCS
Sbjct: 301 YYEVCS 306
>ref|NP_999235.1| oviduct-specific glycoprotein precursor [Sus scrofa].
Length = 527
Score = 559 bits (1440), Expect = e-160
Identities = 276/304 (90%), Positives = 276/304 (90%)
Frame = +2
Query: 23 MGKXXXXXXXXXXXKHHNGAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFAS 202
MGK KHHNGAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFAS
Sbjct: 1 MGKLLLWVGLVLVLKHHNGAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFAS 60
Query: 203 MNDSQIVAKDARDESIFYPEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKF 382
MNDSQIVAKDARDESIFYPEFNQLKERN KLKTLLSIGGWNFGTSRFTTMLSTFTNREKF
Sbjct: 61 MNDSQIVAKDARDESIFYPEFNQLKERNEKLKTLLSIGGWNFGTSRFTTMLSTFTNREKF 120
Query: 383 IRSAIGLLRTHGFDGLDLFFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLL 562
IRSAIGLLRTHGFDGLDLFFLYPGLRGSPRRDRWN QLTMRPRLL
Sbjct: 121 IRSAIGLLRTHGFDGLDLFFLYPGLRGSPRRDRWNFLFLLEELLLAFRREAQLTMRPRLL 180
Query: 563 LSAAVSADPHVIQKAYDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA 742
LSAAVSADPHVIQKAYDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA
Sbjct: 181 LSAAVSADPHVIQKAYDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA 240
Query: 743 YTMNYWRKLGAPPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYY 922
YTMNYWRKLGAPPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYY
Sbjct: 241 YTMNYWRKLGAPPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYY 300
Query: 923 EVCS 934
EVCS
Sbjct: 301 EVCS 304
>ref|XP_003355295.1| PREDICTED: oviduct-specific glycoprotein-like isoform 2 [Sus scrofa].
Length = 559
Score = 550 bits (1416), Expect = e-157
Identities = 279/336 (83%), Positives = 279/336 (83%), Gaps = 30/336 (8%)
Frame = +2
Query: 17 MAMGKXXXXXXXXXXXKHHNGAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAF 196
MAMGK KHHNGAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAF
Sbjct: 1 MAMGKLLLWVGLVLVLKHHNGAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAF 60
Query: 197 ASMNDSQIVAKDARDESIFYPEFNQLKERNGKLKTLLSIGGWNFGTSR------------ 340
ASMNDSQIVAKDARDESIFYPEFNQLKERNGKLKTLLSIGGWNFGTSR
Sbjct: 61 ASMNDSQIVAKDARDESIFYPEFNQLKERNGKLKTLLSIGGWNFGTSRQEKSVPRQGAKT 120
Query: 341 ------------------FTTMLSTFTNREKFIRSAIGLLRTHGFDGLDLFFLYPGLRGS 466
FTTMLSTFTNREKFIRSAIGLLRTHGFDGLDLFFLYPGLRGS
Sbjct: 121 EQLPMRRQQRDSGWLVAEFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDLFFLYPGLRGS 180
Query: 467 PRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDVRLLGRLLDFI 646
PRRDRWN QLTMRPRLLLSAAVSADPHVIQKAYDVRLLGRLLDFI
Sbjct: 181 PRRDRWNFLFLLEELLLAFRREAQLTMRPRLLLSAAVSADPHVIQKAYDVRLLGRLLDFI 240
Query: 647 NVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSAYTMNYWRKLGAPPEKLLMGFPTYGRTFR 826
NVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSAYTMNYWRKLGAPPEKLLMGFPTYGRTFR
Sbjct: 241 NVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSAYTMNYWRKLGAPPEKLLMGFPTYGRTFR 300
Query: 827 LLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
LLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS
Sbjct: 301 LLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 336
>ref|XP_001929072.1| PREDICTED: acidic mammalian chitinase [Sus scrofa].
Length = 478
Score = 283 bits (725), Expect = 7e-77
Identities = 142/291 (48%), Positives = 184/291 (63%), Gaps = 5/291 (1%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A++L+CYF NWA RPG S P D+DP LCTHLV+AFA M +++I + D+ FY
Sbjct: 19 GSAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRNNEITTTEG-DDVTFY 77
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDL 436
FN LK +N +LKTLL+IGGWNFGT+ FT M+ST NR+ FI S I LR +GFDGLD
Sbjct: 78 QSFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDF 137
Query: 437 FFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDV 616
+ YPG RGSP +D+ + T + RLL++AAV+A IQ Y++
Sbjct: 138 DWEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEI 197
Query: 617 RLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGAPP 781
L + LD+I+V++YDLH SWE G NSPL+ D S A Y MNYW+ GAP
Sbjct: 198 PQLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSDAYLNVDYAMNYWKDNGAPA 257
Query: 782 EKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
EKL++GFP YG TF L S ++GA G G YTK+AGF AYYE+C+
Sbjct: 258 EKLIVGFPAYGHTFLLSNPSNTDIGAPTSGAGPAGPYTKEAGFWAYYEICT 308
>ref|XP_003130344.1| PREDICTED: chitotriosidase-1 [Sus scrofa].
Length = 466
Score = 275 bits (704), Expect = 2e-74
Identities = 139/291 (47%), Positives = 185/291 (63%), Gaps = 5/291 (1%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A KLVCYF NWA R G A LP+D+DP LCTHL++AFA MN+ Q+ + + DE++ Y
Sbjct: 19 GSAAKLVCYFTNWAQYREGAARFLPKDVDPNLCTHLIYAFAGMNNHQLSSTEWNDEAL-Y 77
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDL 436
+FN LK+ N KLKTLL+IGGWNFGT +FT M++T NR F+ SAI LR +GFDGLDL
Sbjct: 78 KDFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATVNNRHTFVNSAIRFLRKYGFDGLDL 137
Query: 437 FFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDV 616
+ YPG RGSP D+ Q+T + RLLLSAAVSA I+ Y+V
Sbjct: 138 DWEYPGSRGSPPSDKQRFTALVQDLANAFKQEAQITGKARLLLSAAVSAARPSIEAGYEV 197
Query: 617 RLLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGAPP 781
+ LDF++++ YD HG WEK TGH+SPL+ + ++A + W + G P
Sbjct: 198 DQIAPNLDFLSLMVYDFHGLWEKTTGHHSPLYRRQGESGAAAEFNVDSAVQQWLQKGTPA 257
Query: 782 EKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCS 934
KL++G PTYGR+F L + + A GP +PG +TK+ G LAY+EVCS
Sbjct: 258 NKLILGMPTYGRSFTLASSLDTGVRVPATGPGTPGPFTKEGGLLAYFEVCS 308
>ref|NP_001001540.1| chitinase-3-like protein 1 precursor [Sus scrofa].
Length = 383
Score = 248 bits (633), Expect = 3e-66
Identities = 130/289 (44%), Positives = 183/289 (63%), Gaps = 5/289 (1%)
Frame = +2
Query: 80 AAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFYP 259
AA+KLVCY+ +W+ R G S P +DPFLCTH++++FA++++++I + D ++ Y
Sbjct: 20 AAYKLVCYYTSWSQYREGDGSCFPDAIDPFLCTHIIYSFANISNNEIDTLEWNDVTL-YD 78
Query: 260 EFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDLF 439
N LK RN LKTLLS+GGWNFG+ RF+ + S +R FI+S LRTHGFDGLDL
Sbjct: 79 TLNTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLA 138
Query: 440 FLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDVR 619
++ PG RRD+ L RLLLS AVSA I + YD+
Sbjct: 139 WISPG-----RRDK-RHLTTLVKEMKAEFVREALPGTERLLLSGAVSAGKVAIDRGYDIA 192
Query: 620 LLGRLLDFINVLSYDLHGSWEKVTGHNSPLF-----SLSDDPKSSAYTMNYWRKLGAPPE 784
+ + LDFI++L+YD HG+W + TGH+SPLF + SD ++ Y ++Y +LGAP
Sbjct: 193 QISQHLDFISLLTYDFHGAWRQTTGHHSPLFRGQGDASSDRFSNADYAVSYVLRLGAPAN 252
Query: 785 KLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVC 931
KL+MG PT+GR+F L +SK ++GA A GP PG++TK+ G LAYYE+C
Sbjct: 253 KLVMGIPTFGRSF-TLASSKTDVGAPASGPGIPGRFTKEKGILAYYEIC 300
>ref|XP_003355308.1| PREDICTED: chitinase-3-like protein 2 [Sus scrofa].
Length = 438
Score = 233 bits (594), Expect = 1e-61
Identities = 125/292 (42%), Positives = 175/292 (59%), Gaps = 7/292 (2%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A+KLVCYF +W+ R P DPFLC+HL+++FAS++D+++V KD D ++ Y
Sbjct: 24 GSAYKLVCYFTSWSQDRQEPGKFTLESADPFLCSHLIYSFASISDNKVVIKDKND-AMLY 82
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDL 436
LK +N KLK LLSIGG+ FG+ F M+ + +R +FI S I LR H FDGLD+
Sbjct: 83 QTIKSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSKSRLEFINSVIPFLRNHNFDGLDI 142
Query: 437 FFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDV 616
++YP + +D + + RLLL+A VSA +I +Y +
Sbjct: 143 SWIYPDV-----KDNSLFIVLIHELAEAFQQDSVKSSKERLLLTAGVSAGRQIIDNSYQI 197
Query: 617 RLLGRLLDFINVLSYDLHGSWEK--VTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGA 775
+ L + LDFIN+LS+D HGSWEK VTGHNSPL D +++ Y + YW G
Sbjct: 198 KKLAKELDFINLLSFDFHGSWEKPLVTGHNSPLRKGQLDRGTTSYYNVEYAVGYWLNKGM 257
Query: 776 PPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVC 931
P EK++MG PTYGR+F L A + +GA A GP + G T+ +GFLAYYE+C
Sbjct: 258 PAEKVVMGIPTYGRSFTLASA-ETAVGAPASGPGAAGPITESSGFLAYYEIC 308
>ref|XP_003355300.1| PREDICTED: chitinase-3-like protein 2 [Sus scrofa].
Length = 392
Score = 233 bits (594), Expect = 1e-61
Identities = 125/292 (42%), Positives = 175/292 (59%), Gaps = 7/292 (2%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A+KLVCYF +W+ R P DPFLC+HL+++FAS++D+++V KD D ++ Y
Sbjct: 24 GSAYKLVCYFTSWSQDRQEPGKFTLESADPFLCSHLIYSFASISDNKVVIKDKND-AMLY 82
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDL 436
LK +N KLK LLSIGG+ FG+ F M+ + +R +FI S I LR H FDGLD+
Sbjct: 83 QTIKSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSKSRLEFINSVIPFLRNHNFDGLDI 142
Query: 437 FFLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDV 616
++YP + +D + + RLLL+A VSA +I +Y +
Sbjct: 143 SWIYPDV-----KDNSLFIVLIHELAEAFQQDSVKSSKERLLLTAGVSAGRQIIDNSYQI 197
Query: 617 RLLGRLLDFINVLSYDLHGSWEK--VTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGA 775
+ L + LDFIN+LS+D HGSWEK VTGHNSPL D +++ Y + YW G
Sbjct: 198 KKLAKELDFINLLSFDFHGSWEKPLVTGHNSPLRKGQLDRGTTSYYNVEYAVGYWLNKGM 257
Query: 776 PPEKLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVC 931
P EK++MG PTYGR+F L A + +GA A GP + G T+ +GFLAYYE+C
Sbjct: 258 PAEKVVMGIPTYGRSFTLASA-ETAVGAPASGPGAAGPITESSGFLAYYEIC 308
>ref|XP_003357583.1| PREDICTED: chitinase-3-like protein 1-like [Sus scrofa].
Length = 248
Score = 186 bits (471), Expect = 2e-47
Identities = 96/223 (43%), Positives = 136/223 (60%)
Frame = +2
Query: 80 AAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFYP 259
AA+KLVCY+ +W+ R G S P +DPFLCTH++++FA++++++I + D ++ Y
Sbjct: 20 AAYKLVCYYTSWSQYREGDGSCFPDAIDPFLCTHIIYSFANISNNEIDTLEWNDVTL-YD 78
Query: 260 EFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDLF 439
N LK RN LKTLLS+GGWNFG+ RF+ + S +R FI+S LRTHGFDGLDL
Sbjct: 79 TLNTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLA 138
Query: 440 FLYPGLRGSPRRDRWNXXXXXXXXXXXXXXXXQLTMRPRLLLSAAVSADPHVIQKAYDVR 619
+++PG RRD+ L RLLLS AVSA I + YD+
Sbjct: 139 WIFPG-----RRDK-RHLTTLVKEMKAEFVREALPGTERLLLSGAVSAGKVAIDRGYDIA 192
Query: 620 LLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSAYT 748
+ + LDFI++L+YD HG+W + TGH+SPLF D S ++
Sbjct: 193 QISQHLDFISLLTYDFHGAWRQTTGHHSPLFRGQGDASSDRFS 235
>ref|XP_001926544.3| PREDICTED: acidic mammalian chitinase-like [Sus scrofa].
Length = 106
Score = 115 bits (289), Expect = 3e-26
Identities = 50/88 (56%), Positives = 65/88 (73%)
Frame = +2
Query: 77 GAAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFY 256
G+A+KLVCYF NW+ RP PA P+D+DP LCTHL++AFA+MND++I + D + Y
Sbjct: 19 GSAYKLVCYFTNWSQYRPDPAKFFPKDVDPCLCTHLIYAFATMNDNKIAPYEWNDIDVLY 78
Query: 257 PEFNQLKERNGKLKTLLSIGGWNFGTSR 340
P+F LKERN L LL+IGGWNFGT +
Sbjct: 79 PQFLALKERNKDLVNLLAIGGWNFGTQK 106
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,630,185
Number of extensions: 724927
Number of successful extensions: 2615
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2581
Number of HSP's successfully gapped: 13
Length of query: 312
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 213
Effective length of database: 8,879,129
Effective search space: 1891254477
Effective search space used: 1891254477
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002268
(936 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 410 e-112
>Sscrofa_Chr04
|| Length = 143465943
Score = 410 bits (207), Expect = e-112
Identities = 207/207 (100%)
Strand = Plus / Plus
Query: 77 ggtgctgcccacaagctggtgtgttattttgccaactgggcattcagtcggccaggccct 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119113279 ggtgctgcccacaagctggtgtgttattttgccaactgggcattcagtcggccaggccct 119113338
Query: 137 gcttcgatcctgccccgggacctggacccctttctctgcacccatctggtcttcgccttc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119113339 gcttcgatcctgccccgggacctggacccctttctctgcacccatctggtcttcgccttc 119113398
Query: 197 gcctcaatgaacgacagtcagattgtggccaaggatgcccgggatgagagcatcttctac 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119113399 gcctcaatgaacgacagtcagattgtggccaaggatgcccgggatgagagcatcttctac 119113458
Query: 257 ccagagttcaaccagctcaaggagagg 283
|||||||||||||||||||||||||||
Sbjct: 119113459 ccagagttcaaccagctcaaggagagg 119113485
Score = 367 bits (185), Expect = 7e-99
Identities = 188/189 (99%)
Strand = Plus / Plus
Query: 739 ggcgtacaccatgaattactggcgaaagcttggggcgcccccggaaaagctccttatggg 798
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 119118890 ggcgtacaccatgaattactggcgaaagcttggggcgcccccggagaagctccttatggg 119118949
Query: 799 ttttcccacatatggacggacttttcgcctcctcaaagcctctaagaatgagctgggggc 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119118950 ttttcccacatatggacggacttttcgcctcctcaaagcctctaagaatgagctgggggc 119119009
Query: 859 agaagctgtgggaccagcatccccagggaagtacaccaagcaagctggcttcctggctta 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119119010 agaagctgtgggaccagcatccccagggaagtacaccaagcaagctggcttcctggctta 119119069
Query: 919 ttatgaggt 927
|||||||||
Sbjct: 119119070 ttatgaggt 119119078
Score = 337 bits (170), Expect = 7e-90
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 337 caggttcaccacgatgctgtccaccttcaccaaccgggaaaagttcatcaggtctgccat 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119116156 caggttcaccacgatgctgtccaccttcaccaaccgggaaaagttcatcaggtctgccat 119116215
Query: 397 aggcctcctgaggacacatggcttcgacgggctggacctcttcttcttgtaccctggact 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119116216 aggcctcctgaggacacatggcttcgacgggctggacctcttcttcttgtaccctggact 119116275
Query: 457 cagaggcagccccaggcgtgaccgctggaactttctcttcttacttgaag 506
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119116276 cagaggcagccccaggcgtgaccgctggaactttctcttcttacttgaag 119116325
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 506 gagctcctgcttgccttcaggagggaggcacagctcaccatgcgtccgaggctgctgctc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119116813 gagctcctgcttgccttcaggagggaggcacagctcaccatgcgtccgaggctgctgctc 119116872
Query: 566 tctgctgctgtctctgcggatccgcatgtcatccaaaaagcctatgatgtgcgccttctg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119116873 tctgctgctgtctctgcggatccgcatgtcatccaaaaagcctatgatgtgcgccttctg 119116932
Query: 626 ggaag 630
|||||
Sbjct: 119116933 ggaag 119116937
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 629 agactcctggatttcatcaatgtcttgtcttatgacttacatggaagctgggagaaggtc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119118688 agactcctggatttcatcaatgtcttgtcttatgacttacatggaagctgggagaaggtc 119118747
Query: 689 acgggacacaacagccccctattctctctgtctgatgaccccaaatcttcgg 740
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119118748 acgggacacaacagccccctattctctctgtctgatgaccccaaatcttcgg 119118799
Score = 121 bits (61), Expect = 7e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 281 aggaacgggaagctgaaaacactgctatccatcggagggtggaactttggcacatccagg 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119114480 aggaacgggaagctgaaaacactgctatccatcggagggtggaactttggcacatccagg 119114539
Query: 341 t 341
|
Sbjct: 119114540 t 119114540
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 5 agtgctcagaccatggcgatggggaagctgttgctgtgggtcgg 48
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119112236 agtgctcagaccatggcgatggggaagctgttgctgtgggtcgg 119112279
Score = 65.9 bits (33), Expect = 4e-08
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 47 gggctggttcttgtgctgaaacaccacaatggt 79
|||||||||||||||||||||||||||||||||
Sbjct: 119112846 gggctggttcttgtgctgaaacaccacaatggt 119112878
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,580,227
Number of extensions: 161
Number of successful extensions: 161
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 8
Length of query: 936
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 915
Effective length of database: 2,808,413,156
Effective search space: 2569698037740
Effective search space used: 2569698037740
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)