Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002277
(972 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029744.1| prohibitin [Bos taurus]. 331 7e-91
Alignment gi|NP_001039663.1| prohibitin-2 [Bos taurus]. 169 4e-42
>ref|NP_001029744.1| prohibitin [Bos taurus].
Length = 272
Score = 331 bits (848), Expect = 7e-91
Identities = 170/170 (100%), Positives = 170/170 (100%)
Frame = +3
Query: 81 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 260
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 261 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 440
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 441 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 170
>ref|NP_001039663.1| prohibitin-2 [Bos taurus].
Length = 299
Score = 169 bits (427), Expect = 4e-42
Identities = 88/155 (56%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Frame = +3
Query: 129 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 305
AVA G+ S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGIRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 306 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 485
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 486 AGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
A +LITQR VS + +LTERA F LILDDV++
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAI 184
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,340,090
Number of extensions: 1344671
Number of successful extensions: 4061
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4052
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002277
(972 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103649.1| prohibitin [Canis lupus familiaris]. 331 7e-91
Alignment gi|XP_541546.1| PREDICTED: similar to prohibitin [Canis familia... 304 9e-83
Alignment gi|XP_851325.1| PREDICTED: similar to prohibitin [Canis familia... 267 1e-71
Alignment gi|XP_543843.2| PREDICTED: similar to B-cell receptor-associate... 169 4e-42
Alignment gi|XP_849022.1| PREDICTED: similar to B-cell receptor-associate... 65 7e-11
>ref|NP_001103649.1| prohibitin [Canis lupus familiaris].
Length = 272
Score = 331 bits (848), Expect = 7e-91
Identities = 170/170 (100%), Positives = 170/170 (100%)
Frame = +3
Query: 81 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 260
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 261 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 440
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 441 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 170
>ref|XP_541546.1| PREDICTED: similar to prohibitin [Canis familiaris].
Length = 272
Score = 304 bits (778), Expect = 9e-83
Identities = 158/170 (92%), Positives = 160/170 (94%)
Frame = +3
Query: 81 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 260
MA KVFESI KFGLALAVAGGVVNSALYNVDAGHRAVIFD FRGVQDIVVGEGTHFLIPW
Sbjct: 1 MATKVFESIDKFGLALAVAGGVVNSALYNVDAGHRAVIFDWFRGVQDIVVGEGTHFLIPW 60
Query: 261 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 440
VQK IIFDC SRPRNVPVITGSKDLQNVNI LRILF+PV SQLP IFTSIGEDYDERVLP
Sbjct: 61 VQKSIIFDCHSRPRNVPVITGSKDLQNVNIILRILFQPVNSQLPGIFTSIGEDYDERVLP 120
Query: 441 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
SITTEILKSVVA FDAGELITQRELVSRQVSDDL E+AATFGLILDDVSL
Sbjct: 121 SITTEILKSVVAHFDAGELITQRELVSRQVSDDLIEQAATFGLILDDVSL 170
>ref|XP_851325.1| PREDICTED: similar to prohibitin [Canis familiaris].
Length = 204
Score = 267 bits (682), Expect = 1e-71
Identities = 146/171 (85%), Positives = 147/171 (85%)
Frame = +3
Query: 81 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 260
MA KVF SIGK ALAVAGGVVNSALYNVDAGHRAVIFDRFRG
Sbjct: 1 MAVKVFGSIGKCSPALAVAGGVVNSALYNVDAGHRAVIFDRFRG---------------- 44
Query: 261 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 440
KPIIFDC SRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 45 --KPIIFDCCSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 102
Query: 441 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLV 593
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL+
Sbjct: 103 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLM 153
>ref|XP_543843.2| PREDICTED: similar to B-cell receptor-associated protein 37 [Canis
familiaris].
Length = 283
Score = 169 bits (428), Expect = 4e-42
Identities = 89/155 (57%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Frame = +3
Query: 129 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 305
AVA GV S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGVRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 306 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 485
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 486 AGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
A +LITQR VS + +LTERA F LILDDV++
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAI 184
>ref|XP_849022.1| PREDICTED: similar to B-cell receptor-associated protein 37 [Canis
familiaris].
Length = 234
Score = 65.5 bits (158), Expect = 7e-11
Identities = 45/120 (37%), Positives = 58/120 (48%)
Frame = +3
Query: 231 GEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSI 410
G G PW Q PII+D R+RPR + TGSKDLQ VN +LR L RP A++LP +
Sbjct: 46 GRGPSLQDPWFQYPIIYDIRARPRKISSPTGSKDLQMVNTSLRGLSRPSATELPGMDQRR 105
Query: 411 GEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
DY +V G L+ +RE LTE F L L+DV++
Sbjct: 106 ARDYRGEC----------AVHGHEGPGILVDRRE---------LTETPRDFSLSLEDVAI 146
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,275,956
Number of extensions: 1386672
Number of successful extensions: 4382
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4375
Number of HSP's successfully gapped: 5
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002277
(972 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002625.1| prohibitin [Homo sapiens]. 331 7e-91
Alignment gi|NP_009204.1| prohibitin-2 isoform 2 [Homo sapiens]. 169 3e-42
Alignment gi|NP_001138303.1| prohibitin-2 isoform 1 [Homo sapiens]. 169 3e-42
>ref|NP_002625.1| prohibitin [Homo sapiens].
Length = 272
Score = 331 bits (848), Expect = 7e-91
Identities = 170/170 (100%), Positives = 170/170 (100%)
Frame = +3
Query: 81 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 260
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 261 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 440
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 441 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 170
>ref|NP_009204.1| prohibitin-2 isoform 2 [Homo sapiens].
Length = 299
Score = 169 bits (429), Expect = 3e-42
Identities = 89/155 (57%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Frame = +3
Query: 129 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 305
AVA GV S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGVRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 306 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 485
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 486 AGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
A +LITQR VS + +LTERA F LILDDV++
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAI 184
>ref|NP_001138303.1| prohibitin-2 isoform 1 [Homo sapiens].
Length = 299
Score = 169 bits (429), Expect = 3e-42
Identities = 89/155 (57%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Frame = +3
Query: 129 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 305
AVA GV S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGVRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 306 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 485
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 486 AGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
A +LITQR VS + +LTERA F LILDDV++
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAI 184
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,440,358
Number of extensions: 1361814
Number of successful extensions: 4267
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4262
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002277
(972 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032857.1| prohibitin [Mus musculus]. 330 1e-90
Alignment gi|NP_001028937.1| prohibitin-like [Mus musculus]. 318 5e-87
Alignment gi|NP_031557.2| prohibitin-2 [Mus musculus]. 169 2e-42
>ref|NP_032857.1| prohibitin [Mus musculus].
Length = 272
Score = 330 bits (845), Expect = 1e-90
Identities = 169/170 (99%), Positives = 170/170 (100%)
Frame = +3
Query: 81 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 260
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 261 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 440
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRI+TSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLP 120
Query: 441 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 170
>ref|NP_001028937.1| prohibitin-like [Mus musculus].
Length = 271
Score = 318 bits (814), Expect = 5e-87
Identities = 160/170 (94%), Positives = 168/170 (98%)
Frame = +3
Query: 81 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 260
MAAKVFESIGKFGLALAVAGGVV+SALYNVDAGHRAVIFDRF GVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVSSALYNVDAGHRAVIFDRFHGVQDIVVGEGTHFLIPW 60
Query: 261 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 440
VQKP+IFDCRS+PRN+PVITGSKDLQNVNITLRILFRPVASQLP I+T+IG+DYDERVLP
Sbjct: 61 VQKPVIFDCRSQPRNIPVITGSKDLQNVNITLRILFRPVASQLPHIYTNIGQDYDERVLP 120
Query: 441 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
SIT+EILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL
Sbjct: 121 SITSEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 170
>ref|NP_031557.2| prohibitin-2 [Mus musculus].
Length = 299
Score = 169 bits (429), Expect = 2e-42
Identities = 89/155 (57%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Frame = +3
Query: 129 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 305
AVA GV S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGVRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 306 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 485
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 486 AGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
A +LITQR VS + +LTERA F LILDDV++
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAI 184
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,557,850
Number of extensions: 1139324
Number of successful extensions: 3513
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3507
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002277
(972 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131605.2| PREDICTED: prohibitin-like [Sus scrofa]. 331 4e-91
Alignment gi|XP_003131608.2| PREDICTED: prohibitin-like [Sus scrofa]. 331 4e-91
Alignment gi|NP_001230485.1| prohibitin 2 [Sus scrofa]. 169 3e-42
>ref|XP_003131605.2| PREDICTED: prohibitin-like [Sus scrofa].
Length = 263
Score = 331 bits (848), Expect = 4e-91
Identities = 170/170 (100%), Positives = 170/170 (100%)
Frame = +3
Query: 81 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 260
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 261 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 440
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 441 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 170
>ref|XP_003131608.2| PREDICTED: prohibitin-like [Sus scrofa].
Length = 232
Score = 331 bits (848), Expect = 4e-91
Identities = 170/170 (100%), Positives = 170/170 (100%)
Frame = +3
Query: 81 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 260
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 261 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 440
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 441 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 170
>ref|NP_001230485.1| prohibitin 2 [Sus scrofa].
Length = 299
Score = 169 bits (427), Expect = 3e-42
Identities = 88/155 (56%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Frame = +3
Query: 129 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 305
AVA G+ S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGIRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 306 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 485
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 486 AGELITQRELVSRQVSDDLTERAATFGLILDDVSL 590
A +LITQR VS + +LTERA F LILDDV++
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAI 184
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,946,125
Number of extensions: 868129
Number of successful extensions: 2632
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2629
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002277
(972 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118661.1| Sus scrofa unplaced genomic scaffold ChrUScaf1520 954 0.0
Sscrofa_Chr12 954 0.0
>gb|JH118661.1| Sus scrofa unplaced genomic scaffold ChrUScaf1520
Length = 34041
Score = 954 bits (481), Expect = 0.0
Identities = 495/497 (99%), Gaps = 2/497 (0%)
Strand = Plus / Minus
Query: 473 ggctcgctttgacgctggagaactgatcacccagagagagctggtctccagacaggtgag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10626 ggctcgctttgacgctggagaactgatcacccagagagagctggtctccagacaggtgag 10567
Query: 533 cgatgacctcacggagcgagcagccacctttgggctcatcctggatgacgtgtctctggt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10566 cgatgacctcacggagcgagcagccacctttgggctcatcctggatgacgtgtctctggt 10507
Query: 593 aagagccttggcaagcctgtgggggagggcgcatggctccatggctgggtagacaccgtg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10506 aagagccttggcaagcctgtgggggagggcgcatggctccatggctgggtagacaccgtg 10447
Query: 653 aggtcctccctacgatttgcctcgacgaagacttgaaaacgtggaaccttcctgatggta 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10446 aggtcctccctacgatttgcctcgacgaagacttgaaaacgtggaaccttcctgatggta 10387
Query: 713 tgaggcgctcctccttgggttcgttggacctcccatgtgccacagacatttttcttttga 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10386 tgaggcgctcctccttgggttcgttggacctcccatgtgccacagacatttttcttttga 10327
Query: 773 tttttggttccactcagagggtccccaaccactggacttttcaccttcccccaaactgtg 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10326 tttttggttccactcagagggtccccaaccactggacttttcaccttcccccaaactgtg 10267
Query: 833 agtgttctcccgcgctccccagggagtgatgtctcgcttaaccccgtttgacaccggcag 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10266 agtgttctcccgcgctccccagggagtgatgtctcgcttaaccccgtttgacaccggcag 10207
Query: 893 acactgcccggtagagactagagaacagcttggagagtctttctccctagcacgggacct 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 10206 acactgcccggtagagactagagaacagcttggagagtctttctccctagcacgg-acct 10148
Query: 953 cc-agcctgacccctga 968
|| ||||||||||||||
Sbjct: 10147 cccagcctgacccctga 10131
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 168 gtggatgctgggcacagagctgtcatctttgaccggttccgtggtgtgcaggacattgtt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14211 gtggatgctgggcacagagctgtcatctttgaccggttccgtggtgtgcaggacattgtt 14152
Query: 228 gtaggggaagggacgcactttctcatcccttgggtacagaagccaattatctttgactgc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14151 gtaggggaagggacgcactttctcatcccttgggtacagaagccaattatctttgactgc 14092
Query: 288 cgctctcgaccacgtaacgtgccagtgatcactggtagcaaag 330
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14091 cgctctcgaccacgtaacgtgccagtgatcactggtagcaaag 14049
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 328 aagatttacagaatgtcaacatcaccctgcgtatcctctttcggccggtcgccagccagc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10906 aagatttacagaatgtcaacatcaccctgcgtatcctctttcggccggtcgccagccagc 10847
Query: 388 tcccccgcatcttcaccagcatcggggaggactacgacgagcgtgtgctgccctccatca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10846 tcccccgcatcttcaccagcatcggggaggactacgacgagcgtgtgctgccctccatca 10787
Query: 448 ccacagagatcctcaagtccgtggtgg 474
|||||||||||||||||||||||||||
Sbjct: 10786 ccacagagatcctcaagtccgtggtgg 10760
Score = 111 bits (56), Expect = 7e-22
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 1 catgcgcggtatgtgtggctggggaattcatgtggaggtcagagtggaagcaggtg 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15931 catgcgcggtatgtgtggctggggaattcatgtggaggtcagagtggaagcaggtg 15876
>Sscrofa_Chr12
|| Length = 63588571
Score = 954 bits (481), Expect = 0.0
Identities = 495/497 (99%), Gaps = 2/497 (0%)
Strand = Plus / Minus
Query: 473 ggctcgctttgacgctggagaactgatcacccagagagagctggtctccagacaggtgag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541487 ggctcgctttgacgctggagaactgatcacccagagagagctggtctccagacaggtgag 25541428
Query: 533 cgatgacctcacggagcgagcagccacctttgggctcatcctggatgacgtgtctctggt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541427 cgatgacctcacggagcgagcagccacctttgggctcatcctggatgacgtgtctctggt 25541368
Query: 593 aagagccttggcaagcctgtgggggagggcgcatggctccatggctgggtagacaccgtg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541367 aagagccttggcaagcctgtgggggagggcgcatggctccatggctgggtagacaccgtg 25541308
Query: 653 aggtcctccctacgatttgcctcgacgaagacttgaaaacgtggaaccttcctgatggta 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541307 aggtcctccctacgatttgcctcgacgaagacttgaaaacgtggaaccttcctgatggta 25541248
Query: 713 tgaggcgctcctccttgggttcgttggacctcccatgtgccacagacatttttcttttga 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541247 tgaggcgctcctccttgggttcgttggacctcccatgtgccacagacatttttcttttga 25541188
Query: 773 tttttggttccactcagagggtccccaaccactggacttttcaccttcccccaaactgtg 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541187 tttttggttccactcagagggtccccaaccactggacttttcaccttcccccaaactgtg 25541128
Query: 833 agtgttctcccgcgctccccagggagtgatgtctcgcttaaccccgtttgacaccggcag 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541127 agtgttctcccgcgctccccagggagtgatgtctcgcttaaccccgtttgacaccggcag 25541068
Query: 893 acactgcccggtagagactagagaacagcttggagagtctttctccctagcacgggacct 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 25541067 acactgcccggtagagactagagaacagcttggagagtctttctccctagcacgg-acct 25541009
Query: 953 cc-agcctgacccctga 968
|| ||||||||||||||
Sbjct: 25541008 cccagcctgacccctga 25540992
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 168 gtggatgctgggcacagagctgtcatctttgaccggttccgtggtgtgcaggacattgtt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25545199 gtggatgctgggcacagagctgtcatctttgaccggttccgtggtgtgcaggacattgtt 25545140
Query: 228 gtaggggaagggacgcactttctcatcccttgggtacagaagccaattatctttgactgc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25545139 gtaggggaagggacgcactttctcatcccttgggtacagaagccaattatctttgactgc 25545080
Query: 288 cgctctcgaccacgtaacgtgccagtgatcactggtagcaaag 330
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25545079 cgctctcgaccacgtaacgtgccagtgatcactggtagcaaag 25545037
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 328 aagatttacagaatgtcaacatcaccctgcgtatcctctttcggccggtcgccagccagc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541767 aagatttacagaatgtcaacatcaccctgcgtatcctctttcggccggtcgccagccagc 25541708
Query: 388 tcccccgcatcttcaccagcatcggggaggactacgacgagcgtgtgctgccctccatca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541707 tcccccgcatcttcaccagcatcggggaggactacgacgagcgtgtgctgccctccatca 25541648
Query: 448 ccacagagatcctcaagtccgtggtgg 474
|||||||||||||||||||||||||||
Sbjct: 25541647 ccacagagatcctcaagtccgtggtgg 25541621
Score = 178 bits (90), Expect = 4e-42
Identities = 113/118 (95%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 52 aggtgtgagtgggtccagcagaaggagacatggctgccaaggtgtttgagtccatcggca 111
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||
Sbjct: 25547142 aggtgtgagtgggtccagcaaaaggagacatggctgccagagtgtttgagtccatc-gca 25547084
Query: 112 agtttggcctggcc-ttagccgttgcaggaggcgtggtgaactctgccttgtataatg 168
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25547083 agtttggcctggcctttagccgttgcaggaggcgtggtgaactctgccttgtataatg 25547026
Score = 111 bits (56), Expect = 7e-22
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 1 catgcgcggtatgtgtggctggggaattcatgtggaggtcagagtggaagcaggtg 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25549056 catgcgcggtatgtgtggctggggaattcatgtggaggtcagagtggaagcaggtg 25549001
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,108,201
Number of extensions: 209
Number of successful extensions: 209
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 9
Length of query: 972
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 951
Effective length of database: 2,808,413,156
Effective search space: 2670800911356
Effective search space used: 2670800911356
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)