Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002278
(1041 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029744.1| prohibitin [Bos taurus]. 471 e-133
Alignment gi|NP_001039663.1| prohibitin-2 [Bos taurus]. 223 2e-58
>ref|NP_001029744.1| prohibitin [Bos taurus].
Length = 272
Score = 471 bits (1212), Expect = e-133
Identities = 249/266 (93%), Positives = 249/266 (93%)
Frame = +1
Query: 73 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 252
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 253 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 432
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 433 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 612
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 180
Query: 613 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 792
FVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK
Sbjct: 181 EAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 240
Query: 793 LEAAEDIAYQLSRSRNITYLPAGQSV 870
LEAAEDIAYQLSRSRNITYLPAGQSV
Sbjct: 241 LEAAEDIAYQLSRSRNITYLPAGQSV 266
>ref|NP_001039663.1| prohibitin-2 [Bos taurus].
Length = 299
Score = 223 bits (568), Expect = 2e-58
Identities = 120/251 (47%), Positives = 170/251 (67%), Gaps = 1/251 (0%)
Frame = +1
Query: 121 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 297
AVA G+ S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGIRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 298 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 477
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 478 AGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTXXXXXXXXXXXXXXX 657
A +LITQR VS + +LTERA F LILDDV++T L+F +E+T
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQR 209
Query: 658 XXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSR 837
F+VEKA+Q+++ I+ AEG+++AA ++ +L + G I+LRK+ AA++I+ ++ S+
Sbjct: 210 AQFLVEKAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQ 268
Query: 838 NITYLPAGQSV 870
N YL A V
Sbjct: 269 NRIYLTADNLV 279
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,476,237
Number of extensions: 741275
Number of successful extensions: 2177
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2171
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002278
(1041 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103649.1| prohibitin [Canis lupus familiaris]. 471 e-133
Alignment gi|XP_541546.1| PREDICTED: similar to prohibitin [Canis familia... 436 e-122
Alignment gi|XP_851325.1| PREDICTED: similar to prohibitin [Canis familia... 311 7e-85
Alignment gi|XP_543843.2| PREDICTED: similar to B-cell receptor-associate... 203 2e-52
Alignment gi|XP_849022.1| PREDICTED: similar to B-cell receptor-associate... 88 2e-17
Alignment gi|XP_548187.2| PREDICTED: similar to UDP-GalNAc:Neu5Acalpha2-3... 61 2e-09
>ref|NP_001103649.1| prohibitin [Canis lupus familiaris].
Length = 272
Score = 471 bits (1212), Expect = e-133
Identities = 249/266 (93%), Positives = 249/266 (93%)
Frame = +1
Query: 73 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 252
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 253 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 432
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 433 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 612
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 180
Query: 613 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 792
FVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK
Sbjct: 181 EAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 240
Query: 793 LEAAEDIAYQLSRSRNITYLPAGQSV 870
LEAAEDIAYQLSRSRNITYLPAGQSV
Sbjct: 241 LEAAEDIAYQLSRSRNITYLPAGQSV 266
>ref|XP_541546.1| PREDICTED: similar to prohibitin [Canis familiaris].
Length = 272
Score = 436 bits (1121), Expect = e-122
Identities = 233/266 (87%), Positives = 236/266 (88%)
Frame = +1
Query: 73 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 252
MA KVFESI KFGLALAVAGGVVNSALYNVDAGHRAVIFD FRGVQDIVVGEGTHFLIPW
Sbjct: 1 MATKVFESIDKFGLALAVAGGVVNSALYNVDAGHRAVIFDWFRGVQDIVVGEGTHFLIPW 60
Query: 253 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 432
VQK IIFDC SRPRNVPVITGSKDLQNVNI LRILF+PV SQLP IFTSIGEDYDERVLP
Sbjct: 61 VQKSIIFDCHSRPRNVPVITGSKDLQNVNIILRILFQPVNSQLPGIFTSIGEDYDERVLP 120
Query: 433 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 612
SITTEILKSVVA FDAGELITQRELVSRQVSDDL E+AATFGLILDDVSLTHLTFGKEFT
Sbjct: 121 SITTEILKSVVAHFDAGELITQRELVSRQVSDDLIEQAATFGLILDDVSLTHLTFGKEFT 180
Query: 613 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 792
FVVEKAEQQKK AIISAEG SKAAELIANSLAT GDGLIELRK
Sbjct: 181 KAVEAKLVAQQEAERARFVVEKAEQQKKEAIISAEGFSKAAELIANSLATGGDGLIELRK 240
Query: 793 LEAAEDIAYQLSRSRNITYLPAGQSV 870
LEAAED+AYQLSRSRNITYLPAGQSV
Sbjct: 241 LEAAEDMAYQLSRSRNITYLPAGQSV 266
>ref|XP_851325.1| PREDICTED: similar to prohibitin [Canis familiaris].
Length = 204
Score = 311 bits (797), Expect = 7e-85
Identities = 173/219 (78%), Positives = 175/219 (79%)
Frame = +1
Query: 73 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 252
MA KVF SIGK ALAVAGGVVNSALYNVDAGHRAVIFDRFRG
Sbjct: 1 MAVKVFGSIGKCSPALAVAGGVVNSALYNVDAGHRAVIFDRFRG---------------- 44
Query: 253 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 432
KPIIFDC SRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 45 --KPIIFDCCSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 102
Query: 433 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 612
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL HLTFGKEFT
Sbjct: 103 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLMHLTFGKEFT 162
Query: 613 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSK 729
FVVEKAEQQKK AIISA+G S+
Sbjct: 163 EAVEAKQVAQQEAERARFVVEKAEQQKKEAIISAKGGSR 201
>ref|XP_543843.2| PREDICTED: similar to B-cell receptor-associated protein 37 [Canis
familiaris].
Length = 283
Score = 203 bits (517), Expect = 2e-52
Identities = 107/210 (50%), Positives = 146/210 (69%), Gaps = 1/210 (0%)
Frame = +1
Query: 121 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 297
AVA GV S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGVRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 298 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 477
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 478 AGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTXXXXXXXXXXXXXXX 657
A +LITQR VS + +LTERA F LILDDV++T L+F +E+T
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQR 209
Query: 658 XXFVVEKAEQQKKAAIISAEGDSKAAELIA 747
F+VEKA+Q+++ I+ AEG+++AA +I+
Sbjct: 210 AQFLVEKAKQEQRQKIVQAEGEAEAARMIS 239
>ref|XP_849022.1| PREDICTED: similar to B-cell receptor-associated protein 37 [Canis
familiaris].
Length = 234
Score = 87.8 bits (216), Expect = 2e-17
Identities = 62/188 (32%), Positives = 85/188 (45%), Gaps = 2/188 (1%)
Frame = +1
Query: 223 GEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSI 402
G G PW Q PII+D R+RPR + TGSKDLQ VN +LR L RP A++LP +
Sbjct: 46 GRGPSLQDPWFQYPIIYDIRARPRKISSPTGSKDLQMVNTSLRGLSRPSATELPGMDQRR 105
Query: 403 GEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 582
DY +V G L+ +RE LTE F L L+DV++
Sbjct: 106 ARDYRGEC----------AVHGHEGPGILVDRRE---------LTETPRDFSLSLEDVAI 146
Query: 583 THLTFGKEFTXXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGD--SKAAELIANSL 756
T L F +E+T F+V KA+Q+++ + AE SK N +
Sbjct: 147 TELGFSREYTAAVEAKQVAQQEAQRAQFLVAKAKQERRQKTVQAEAQNASKTIATSQNRI 206
Query: 757 ATAGDGLI 780
D L+
Sbjct: 207 YLTADNLV 214
>ref|XP_548187.2| PREDICTED: similar to UDP-GalNAc:Neu5Acalpha2-3Galbeta-R
beta1,4-N-acetylgalactosaminyltransferase [Canis
familiaris].
Length = 534
Score = 60.8 bits (146), Expect = 2e-09
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +1
Query: 778 IELRKLEAAEDIAYQLSRSRNITYLPAGQSV 870
+ELRKLEAAEDIAYQLSRSRNITYLPAGQSV
Sbjct: 1 MELRKLEAAEDIAYQLSRSRNITYLPAGQSV 31
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,933,203
Number of extensions: 767851
Number of successful extensions: 2351
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2342
Number of HSP's successfully gapped: 6
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002278
(1041 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002625.1| prohibitin [Homo sapiens]. 471 e-133
Alignment gi|NP_009204.1| prohibitin-2 isoform 2 [Homo sapiens]. 224 1e-58
Alignment gi|NP_001138303.1| prohibitin-2 isoform 1 [Homo sapiens]. 224 1e-58
>ref|NP_002625.1| prohibitin [Homo sapiens].
Length = 272
Score = 471 bits (1212), Expect = e-133
Identities = 249/266 (93%), Positives = 249/266 (93%)
Frame = +1
Query: 73 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 252
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 253 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 432
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 433 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 612
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 180
Query: 613 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 792
FVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK
Sbjct: 181 EAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 240
Query: 793 LEAAEDIAYQLSRSRNITYLPAGQSV 870
LEAAEDIAYQLSRSRNITYLPAGQSV
Sbjct: 241 LEAAEDIAYQLSRSRNITYLPAGQSV 266
>ref|NP_009204.1| prohibitin-2 isoform 2 [Homo sapiens].
Length = 299
Score = 224 bits (571), Expect = 1e-58
Identities = 121/251 (48%), Positives = 171/251 (68%), Gaps = 1/251 (0%)
Frame = +1
Query: 121 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 297
AVA GV S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGVRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 298 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 477
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 478 AGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTXXXXXXXXXXXXXXX 657
A +LITQR VS + +LTERA F LILDDV++T L+F +E+T
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQR 209
Query: 658 XXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSR 837
F+VEKA+Q+++ I+ AEG+++AA+++ +L + G I+LRK+ AA++I+ ++ S+
Sbjct: 210 AQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQ 268
Query: 838 NITYLPAGQSV 870
N YL A V
Sbjct: 269 NRIYLTADNLV 279
>ref|NP_001138303.1| prohibitin-2 isoform 1 [Homo sapiens].
Length = 299
Score = 224 bits (571), Expect = 1e-58
Identities = 121/251 (48%), Positives = 171/251 (68%), Gaps = 1/251 (0%)
Frame = +1
Query: 121 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 297
AVA GV S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGVRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 298 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 477
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 478 AGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTXXXXXXXXXXXXXXX 657
A +LITQR VS + +LTERA F LILDDV++T L+F +E+T
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQR 209
Query: 658 XXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSR 837
F+VEKA+Q+++ I+ AEG+++AA+++ +L + G I+LRK+ AA++I+ ++ S+
Sbjct: 210 AQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQ 268
Query: 838 NITYLPAGQSV 870
N YL A V
Sbjct: 269 NRIYLTADNLV 279
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,323,690
Number of extensions: 755443
Number of successful extensions: 2269
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2264
Number of HSP's successfully gapped: 3
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002278
(1041 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032857.1| prohibitin [Mus musculus]. 470 e-133
Alignment gi|NP_001028937.1| prohibitin-like [Mus musculus]. 449 e-126
Alignment gi|NP_031557.2| prohibitin-2 [Mus musculus]. 224 9e-59
>ref|NP_032857.1| prohibitin [Mus musculus].
Length = 272
Score = 470 bits (1209), Expect = e-133
Identities = 248/266 (93%), Positives = 249/266 (93%)
Frame = +1
Query: 73 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 252
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 253 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 432
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRI+TSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLP 120
Query: 433 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 612
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 180
Query: 613 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 792
FVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK
Sbjct: 181 EAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 240
Query: 793 LEAAEDIAYQLSRSRNITYLPAGQSV 870
LEAAEDIAYQLSRSRNITYLPAGQSV
Sbjct: 241 LEAAEDIAYQLSRSRNITYLPAGQSV 266
>ref|NP_001028937.1| prohibitin-like [Mus musculus].
Length = 271
Score = 449 bits (1156), Expect = e-126
Identities = 233/266 (87%), Positives = 245/266 (92%)
Frame = +1
Query: 73 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 252
MAAKVFESIGKFGLALAVAGGVV+SALYNVDAGHRAVIFDRF GVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVSSALYNVDAGHRAVIFDRFHGVQDIVVGEGTHFLIPW 60
Query: 253 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 432
VQKP+IFDCRS+PRN+PVITGSKDLQNVNITLRILFRPVASQLP I+T+IG+DYDERVLP
Sbjct: 61 VQKPVIFDCRSQPRNIPVITGSKDLQNVNITLRILFRPVASQLPHIYTNIGQDYDERVLP 120
Query: 433 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 612
SIT+EILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT
Sbjct: 121 SITSEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 180
Query: 613 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 792
FVVEKAEQQK AAIISAEGD+KAAELIANSLATAGDGLIELRK
Sbjct: 181 EAVEAKQVAQQEAETARFVVEKAEQQKVAAIISAEGDAKAAELIANSLATAGDGLIELRK 240
Query: 793 LEAAEDIAYQLSRSRNITYLPAGQSV 870
LEAAEDIAYQLSRS+N+TYLP GQ+V
Sbjct: 241 LEAAEDIAYQLSRSQNVTYLPVGQTV 266
>ref|NP_031557.2| prohibitin-2 [Mus musculus].
Length = 299
Score = 224 bits (571), Expect = 9e-59
Identities = 121/251 (48%), Positives = 171/251 (68%), Gaps = 1/251 (0%)
Frame = +1
Query: 121 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 297
AVA GV S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGVRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 298 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 477
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 478 AGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTXXXXXXXXXXXXXXX 657
A +LITQR VS + +LTERA F LILDDV++T L+F +E+T
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQR 209
Query: 658 XXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSR 837
F+VEKA+Q+++ I+ AEG+++AA+++ +L + G I+LRK+ AA++I+ ++ S+
Sbjct: 210 AQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQ 268
Query: 838 NITYLPAGQSV 870
N YL A V
Sbjct: 269 NRIYLTADNLV 279
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,273,641
Number of extensions: 639340
Number of successful extensions: 1928
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1920
Number of HSP's successfully gapped: 3
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002278
(1041 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131605.2| PREDICTED: prohibitin-like [Sus scrofa]. 429 e-120
Alignment gi|XP_003131608.2| PREDICTED: prohibitin-like [Sus scrofa]. 331 5e-91
Alignment gi|NP_001230485.1| prohibitin 2 [Sus scrofa]. 223 1e-58
>ref|XP_003131605.2| PREDICTED: prohibitin-like [Sus scrofa].
Length = 263
Score = 429 bits (1104), Expect = e-120
Identities = 229/266 (86%), Positives = 233/266 (87%)
Frame = +1
Query: 73 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 252
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 253 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 432
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 433 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 612
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 180
Query: 613 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 792
FVVEK +SA+ D ++ NSLATAGDGLIELRK
Sbjct: 181 EAVEAKQVAQQEAERARFVVEK---------VSAQPDGRSPSXXXNSLATAGDGLIELRK 231
Query: 793 LEAAEDIAYQLSRSRNITYLPAGQSV 870
LEAAEDIAYQLSRSRNITYLPAGQSV
Sbjct: 232 LEAAEDIAYQLSRSRNITYLPAGQSV 257
>ref|XP_003131608.2| PREDICTED: prohibitin-like [Sus scrofa].
Length = 232
Score = 331 bits (848), Expect = 5e-91
Identities = 170/170 (100%), Positives = 170/170 (100%)
Frame = +1
Query: 73 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 252
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 253 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 432
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 433 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 582
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 170
>ref|NP_001230485.1| prohibitin 2 [Sus scrofa].
Length = 299
Score = 223 bits (568), Expect = 1e-58
Identities = 120/251 (47%), Positives = 170/251 (67%), Gaps = 1/251 (0%)
Frame = +1
Query: 121 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 297
AVA G+ S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGIRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 298 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 477
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 478 AGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTXXXXXXXXXXXXXXX 657
A +LITQR VS + +LTERA F LILDDV++T L+F +E+T
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQR 209
Query: 658 XXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSR 837
F+VEKA+Q+++ I+ AEG+++AA ++ +L + G I+LRK+ AA++I+ ++ S+
Sbjct: 210 AQFLVEKAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQ 268
Query: 838 NITYLPAGQSV 870
N YL A V
Sbjct: 269 NRIYLTADNLV 279
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,919,629
Number of extensions: 475681
Number of successful extensions: 1374
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1370
Number of HSP's successfully gapped: 3
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002278
(1041 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 688 0.0
gb|JH118661.1| Sus scrofa unplaced genomic scaffold ChrUScaf1520 551 e-154
>Sscrofa_Chr12
|| Length = 63588571
Score = 688 bits (347), Expect = 0.0
Identities = 350/351 (99%)
Strand = Plus / Minus
Query: 677 aggctgagcagcagaagaaggcagccatcatctccgccgagggcgactccaaggcggcgg 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25537016 aggctgagcagcagaagaaggcagccatcatctccgccgagggcgactccaaggcggcgg 25536957
Query: 737 agctgatcgccaactcgctggccactgcgggcgacggcctcatcgagctgcgcaagctgg 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536956 agctgatcgccaactcgctggccactgcgggcgacggcctcatcgagctgcgcaagctgg 25536897
Query: 797 aggccgcggaggacatcgcgtaccagctgtcacgctcccggaacatcacctacctgccgg 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536896 aggccgcggaggacatcgcgtaccagctgtcacgctcccggaacatcacctacctgccgg 25536837
Query: 857 ccggccagtcggtgctcctccagctgccgcagtgaggcccgcccctcccggggccactgg 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536836 ccggccagtcggtgctcctccagctgccgcagtgaggcccgcccctcccggggccactgg 25536777
Query: 917 accccagccccggtgatctcagccgctccttccttctcccaccccaaaaatcactgtgaa 976
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 25536776 accccagccccggtgatctcagccgctccttccttctcccaccccagaaatcactgtgaa 25536717
Query: 977 acttcatgattggcttaaagtgaaggaaataaaagtaaaatcacttcggat 1027
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536716 acttcatgattggcttaaagtgaaggaaataaaagtaaaatcacttcggat 25536666
Score = 307 bits (155), Expect = 6e-81
Identities = 161/163 (98%)
Strand = Plus / Minus
Query: 160 gtggatgctgggcacagagctgtcatctttgaccggttccgtggcgtgcaggacattgta 219
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 25545199 gtggatgctgggcacagagctgtcatctttgaccggttccgtggtgtgcaggacattgtt 25545140
Query: 220 gtaggggaagggacgcactttctcatcccttgggtacagaagccaattatctttgactgc 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25545139 gtaggggaagggacgcactttctcatcccttgggtacagaagccaattatctttgactgc 25545080
Query: 280 cgctctcgaccacgtaacgtgccagtgatcactggtagcaaag 322
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25545079 cgctctcgaccacgtaacgtgccagtgatcactggtagcaaag 25545037
Score = 283 bits (143), Expect = 9e-74
Identities = 146/147 (99%)
Strand = Plus / Minus
Query: 320 aagatttacagaatgtcaacatcaccctgcgtatcctctttcggccggtcgccagccagc 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541767 aagatttacagaatgtcaacatcaccctgcgtatcctctttcggccggtcgccagccagc 25541708
Query: 380 tcccccgcatcttcaccagcatcggggaggactacgacgagcgcgtgctgccctccatca 439
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 25541707 tcccccgcatcttcaccagcatcggggaggactacgacgagcgtgtgctgccctccatca 25541648
Query: 440 ccacagagatcctcaagtccgtggtgg 466
|||||||||||||||||||||||||||
Sbjct: 25541647 ccacagagatcctcaagtccgtggtgg 25541621
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 465 ggctcgctttgacgctggagaactgatcacccagagagagctggtctccagacaggtgag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541487 ggctcgctttgacgctggagaactgatcacccagagagagctggtctccagacaggtgag 25541428
Query: 525 cgatgacctcacggagcgagcagccacctttgggctcatcctggatgacgtgtctctg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541427 cgatgacctcacggagcgagcagccacctttgggctcatcctggatgacgtgtctctg 25541370
Score = 194 bits (98), Expect = 7e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 582 gacgcatctgaccttcggcaaggagttcacagaagcggtggaagccaaacaggtggctca 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25538464 gacgcatctgaccttcggcaaggagttcacagaagcggtggaagccaaacaggtggctca 25538405
Query: 642 gcaggaagcagagagggccagatttgtggtggaaaagg 679
||||||||||||||||||||||||||||||||||||||
Sbjct: 25538404 gcaggaagcagagagggccagatttgtggtggaaaagg 25538367
Score = 178 bits (90), Expect = 4e-42
Identities = 113/118 (95%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 44 aggtgtgagtgggtccagcagaaggagacatggctgccaaggtgtttgagtccatcggca 103
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||
Sbjct: 25547142 aggtgtgagtgggtccagcaaaaggagacatggctgccagagtgtttgagtccatc-gca 25547084
Query: 104 agtttggcctggcc-ttagccgttgcaggaggcgtggtgaactctgccttgtataatg 160
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25547083 agtttggcctggcctttagccgttgcaggaggcgtggtgaactctgccttgtataatg 25547026
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 1 gtatgtgtggctggggaattcatgtggaggtcagagtggaagcaggtg 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25549048 gtatgtgtggctggggaattcatgtggaggtcagagtggaagcaggtg 25549001
>gb|JH118661.1| Sus scrofa unplaced genomic scaffold ChrUScaf1520
Length = 34041
Score = 551 bits (278), Expect = e-154
Identities = 281/282 (99%)
Strand = Plus / Minus
Query: 746 ccaactcgctggccactgcgggcgacggcctcatcgagctgcgcaagctggaggccgcgg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5920 ccaactcgctggccactgcgggcgacggcctcatcgagctgcgcaagctggaggccgcgg 5861
Query: 806 aggacatcgcgtaccagctgtcacgctcccggaacatcacctacctgccggccggccagt 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5860 aggacatcgcgtaccagctgtcacgctcccggaacatcacctacctgccggccggccagt 5801
Query: 866 cggtgctcctccagctgccgcagtgaggcccgcccctcccggggccactggaccccagcc 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5800 cggtgctcctccagctgccgcagtgaggcccgcccctcccggggccactggaccccagcc 5741
Query: 926 ccggtgatctcagccgctccttccttctcccaccccaaaaatcactgtgaaacttcatga 985
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5740 ccggtgatctcagccgctccttccttctcccaccccagaaatcactgtgaaacttcatga 5681
Query: 986 ttggcttaaagtgaaggaaataaaagtaaaatcacttcggat 1027
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5680 ttggcttaaagtgaaggaaataaaagtaaaatcacttcggat 5639
Score = 307 bits (155), Expect = 6e-81
Identities = 161/163 (98%)
Strand = Plus / Minus
Query: 160 gtggatgctgggcacagagctgtcatctttgaccggttccgtggcgtgcaggacattgta 219
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 14211 gtggatgctgggcacagagctgtcatctttgaccggttccgtggtgtgcaggacattgtt 14152
Query: 220 gtaggggaagggacgcactttctcatcccttgggtacagaagccaattatctttgactgc 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14151 gtaggggaagggacgcactttctcatcccttgggtacagaagccaattatctttgactgc 14092
Query: 280 cgctctcgaccacgtaacgtgccagtgatcactggtagcaaag 322
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14091 cgctctcgaccacgtaacgtgccagtgatcactggtagcaaag 14049
Score = 283 bits (143), Expect = 9e-74
Identities = 146/147 (99%)
Strand = Plus / Minus
Query: 320 aagatttacagaatgtcaacatcaccctgcgtatcctctttcggccggtcgccagccagc 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10906 aagatttacagaatgtcaacatcaccctgcgtatcctctttcggccggtcgccagccagc 10847
Query: 380 tcccccgcatcttcaccagcatcggggaggactacgacgagcgcgtgctgccctccatca 439
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 10846 tcccccgcatcttcaccagcatcggggaggactacgacgagcgtgtgctgccctccatca 10787
Query: 440 ccacagagatcctcaagtccgtggtgg 466
|||||||||||||||||||||||||||
Sbjct: 10786 ccacagagatcctcaagtccgtggtgg 10760
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 465 ggctcgctttgacgctggagaactgatcacccagagagagctggtctccagacaggtgag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10626 ggctcgctttgacgctggagaactgatcacccagagagagctggtctccagacaggtgag 10567
Query: 525 cgatgacctcacggagcgagcagccacctttgggctcatcctggatgacgtgtctctg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10566 cgatgacctcacggagcgagcagccacctttgggctcatcctggatgacgtgtctctg 10509
Score = 194 bits (98), Expect = 7e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 582 gacgcatctgaccttcggcaaggagttcacagaagcggtggaagccaaacaggtggctca 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7415 gacgcatctgaccttcggcaaggagttcacagaagcggtggaagccaaacaggtggctca 7356
Query: 642 gcaggaagcagagagggccagatttgtggtggaaaagg 679
||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 gcaggaagcagagagggccagatttgtggtggaaaagg 7318
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 1 gtatgtgtggctggggaattcatgtggaggtcagagtggaagcaggtg 48
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Sbjct: 15923 gtatgtgtggctggggaattcatgtggaggtcagagtggaagcaggtg 15876
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,698,967
Number of extensions: 300
Number of successful extensions: 300
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 13
Length of query: 1041
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1020
Effective length of database: 2,808,413,156
Effective search space: 2864581419120
Effective search space used: 2864581419120
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)