Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002279
(1810 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029744.1| prohibitin [Bos taurus]. 471 e-133
Alignment gi|NP_001039663.1| prohibitin-2 [Bos taurus]. 223 4e-58
>ref|NP_001029744.1| prohibitin [Bos taurus].
Length = 272
Score = 471 bits (1212), Expect = e-133
Identities = 249/266 (93%), Positives = 249/266 (93%)
Frame = +3
Query: 84 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 263
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 264 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 443
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 444 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 623
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 180
Query: 624 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 803
FVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK
Sbjct: 181 EAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 240
Query: 804 LEAAEDIAYQLSRSRNITYLPAGQSV 881
LEAAEDIAYQLSRSRNITYLPAGQSV
Sbjct: 241 LEAAEDIAYQLSRSRNITYLPAGQSV 266
>ref|NP_001039663.1| prohibitin-2 [Bos taurus].
Length = 299
Score = 223 bits (568), Expect = 4e-58
Identities = 120/251 (47%), Positives = 170/251 (67%), Gaps = 1/251 (0%)
Frame = +3
Query: 132 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 308
AVA G+ S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGIRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 309 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 488
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 489 AGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTXXXXXXXXXXXXXXX 668
A +LITQR VS + +LTERA F LILDDV++T L+F +E+T
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQR 209
Query: 669 XXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSR 848
F+VEKA+Q+++ I+ AEG+++AA ++ +L + G I+LRK+ AA++I+ ++ S+
Sbjct: 210 AQFLVEKAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQ 268
Query: 849 NITYLPAGQSV 881
N YL A V
Sbjct: 269 NRIYLTADNLV 279
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 70,577,554
Number of extensions: 2022830
Number of successful extensions: 6969
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6953
Number of HSP's successfully gapped: 2
Length of query: 603
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 495
Effective length of database: 14,107,870
Effective search space: 6983395650
Effective search space used: 6983395650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002279
(1810 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103649.1| prohibitin [Canis lupus familiaris]. 471 e-132
Alignment gi|XP_541546.1| PREDICTED: similar to prohibitin [Canis familia... 436 e-122
Alignment gi|XP_851325.1| PREDICTED: similar to prohibitin [Canis familia... 311 1e-84
Alignment gi|XP_543843.2| PREDICTED: similar to B-cell receptor-associate... 203 4e-52
Alignment gi|XP_849022.1| PREDICTED: similar to B-cell receptor-associate... 88 3e-17
Alignment gi|XP_548187.2| PREDICTED: similar to UDP-GalNAc:Neu5Acalpha2-3... 61 4e-09
>ref|NP_001103649.1| prohibitin [Canis lupus familiaris].
Length = 272
Score = 471 bits (1212), Expect = e-132
Identities = 249/266 (93%), Positives = 249/266 (93%)
Frame = +3
Query: 84 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 263
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 264 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 443
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 444 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 623
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 180
Query: 624 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 803
FVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK
Sbjct: 181 EAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 240
Query: 804 LEAAEDIAYQLSRSRNITYLPAGQSV 881
LEAAEDIAYQLSRSRNITYLPAGQSV
Sbjct: 241 LEAAEDIAYQLSRSRNITYLPAGQSV 266
>ref|XP_541546.1| PREDICTED: similar to prohibitin [Canis familiaris].
Length = 272
Score = 436 bits (1121), Expect = e-122
Identities = 233/266 (87%), Positives = 236/266 (88%)
Frame = +3
Query: 84 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 263
MA KVFESI KFGLALAVAGGVVNSALYNVDAGHRAVIFD FRGVQDIVVGEGTHFLIPW
Sbjct: 1 MATKVFESIDKFGLALAVAGGVVNSALYNVDAGHRAVIFDWFRGVQDIVVGEGTHFLIPW 60
Query: 264 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 443
VQK IIFDC SRPRNVPVITGSKDLQNVNI LRILF+PV SQLP IFTSIGEDYDERVLP
Sbjct: 61 VQKSIIFDCHSRPRNVPVITGSKDLQNVNIILRILFQPVNSQLPGIFTSIGEDYDERVLP 120
Query: 444 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 623
SITTEILKSVVA FDAGELITQRELVSRQVSDDL E+AATFGLILDDVSLTHLTFGKEFT
Sbjct: 121 SITTEILKSVVAHFDAGELITQRELVSRQVSDDLIEQAATFGLILDDVSLTHLTFGKEFT 180
Query: 624 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 803
FVVEKAEQQKK AIISAEG SKAAELIANSLAT GDGLIELRK
Sbjct: 181 KAVEAKLVAQQEAERARFVVEKAEQQKKEAIISAEGFSKAAELIANSLATGGDGLIELRK 240
Query: 804 LEAAEDIAYQLSRSRNITYLPAGQSV 881
LEAAED+AYQLSRSRNITYLPAGQSV
Sbjct: 241 LEAAEDMAYQLSRSRNITYLPAGQSV 266
>ref|XP_851325.1| PREDICTED: similar to prohibitin [Canis familiaris].
Length = 204
Score = 311 bits (797), Expect = 1e-84
Identities = 173/219 (78%), Positives = 175/219 (79%)
Frame = +3
Query: 84 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 263
MA KVF SIGK ALAVAGGVVNSALYNVDAGHRAVIFDRFRG
Sbjct: 1 MAVKVFGSIGKCSPALAVAGGVVNSALYNVDAGHRAVIFDRFRG---------------- 44
Query: 264 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 443
KPIIFDC SRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 45 --KPIIFDCCSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 102
Query: 444 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 623
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL HLTFGKEFT
Sbjct: 103 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLMHLTFGKEFT 162
Query: 624 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSK 740
FVVEKAEQQKK AIISA+G S+
Sbjct: 163 EAVEAKQVAQQEAERARFVVEKAEQQKKEAIISAKGGSR 201
>ref|XP_543843.2| PREDICTED: similar to B-cell receptor-associated protein 37 [Canis
familiaris].
Length = 283
Score = 203 bits (517), Expect = 4e-52
Identities = 107/210 (50%), Positives = 146/210 (69%), Gaps = 1/210 (0%)
Frame = +3
Query: 132 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 308
AVA GV S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGVRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 309 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 488
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 489 AGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTXXXXXXXXXXXXXXX 668
A +LITQR VS + +LTERA F LILDDV++T L+F +E+T
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQR 209
Query: 669 XXFVVEKAEQQKKAAIISAEGDSKAAELIA 758
F+VEKA+Q+++ I+ AEG+++AA +I+
Sbjct: 210 AQFLVEKAKQEQRQKIVQAEGEAEAARMIS 239
>ref|XP_849022.1| PREDICTED: similar to B-cell receptor-associated protein 37 [Canis
familiaris].
Length = 234
Score = 87.8 bits (216), Expect = 3e-17
Identities = 62/188 (32%), Positives = 85/188 (45%), Gaps = 2/188 (1%)
Frame = +3
Query: 234 GEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSI 413
G G PW Q PII+D R+RPR + TGSKDLQ VN +LR L RP A++LP +
Sbjct: 46 GRGPSLQDPWFQYPIIYDIRARPRKISSPTGSKDLQMVNTSLRGLSRPSATELPGMDQRR 105
Query: 414 GEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 593
DY +V G L+ +RE LTE F L L+DV++
Sbjct: 106 ARDYRGEC----------AVHGHEGPGILVDRRE---------LTETPRDFSLSLEDVAI 146
Query: 594 THLTFGKEFTXXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGD--SKAAELIANSL 767
T L F +E+T F+V KA+Q+++ + AE SK N +
Sbjct: 147 TELGFSREYTAAVEAKQVAQQEAQRAQFLVAKAKQERRQKTVQAEAQNASKTIATSQNRI 206
Query: 768 ATAGDGLI 791
D L+
Sbjct: 207 YLTADNLV 214
>ref|XP_548187.2| PREDICTED: similar to UDP-GalNAc:Neu5Acalpha2-3Galbeta-R
beta1,4-N-acetylgalactosaminyltransferase [Canis
familiaris].
Length = 534
Score = 60.8 bits (146), Expect = 4e-09
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 789 IELRKLEAAEDIAYQLSRSRNITYLPAGQSV 881
+ELRKLEAAEDIAYQLSRSRNITYLPAGQSV
Sbjct: 1 MELRKLEAAEDIAYQLSRSRNITYLPAGQSV 31
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 73,495,558
Number of extensions: 2078339
Number of successful extensions: 7097
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7086
Number of HSP's successfully gapped: 6
Length of query: 603
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 494
Effective length of database: 15,240,880
Effective search space: 7528994720
Effective search space used: 7528994720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002279
(1810 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002625.1| prohibitin [Homo sapiens]. 471 e-132
Alignment gi|NP_009204.1| prohibitin-2 isoform 2 [Homo sapiens]. 224 2e-58
Alignment gi|NP_001138303.1| prohibitin-2 isoform 1 [Homo sapiens]. 224 2e-58
>ref|NP_002625.1| prohibitin [Homo sapiens].
Length = 272
Score = 471 bits (1212), Expect = e-132
Identities = 249/266 (93%), Positives = 249/266 (93%)
Frame = +3
Query: 84 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 263
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 264 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 443
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 444 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 623
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 180
Query: 624 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 803
FVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK
Sbjct: 181 EAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 240
Query: 804 LEAAEDIAYQLSRSRNITYLPAGQSV 881
LEAAEDIAYQLSRSRNITYLPAGQSV
Sbjct: 241 LEAAEDIAYQLSRSRNITYLPAGQSV 266
>ref|NP_009204.1| prohibitin-2 isoform 2 [Homo sapiens].
Length = 299
Score = 224 bits (571), Expect = 2e-58
Identities = 121/251 (48%), Positives = 171/251 (68%), Gaps = 1/251 (0%)
Frame = +3
Query: 132 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 308
AVA GV S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGVRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 309 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 488
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 489 AGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTXXXXXXXXXXXXXXX 668
A +LITQR VS + +LTERA F LILDDV++T L+F +E+T
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQR 209
Query: 669 XXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSR 848
F+VEKA+Q+++ I+ AEG+++AA+++ +L + G I+LRK+ AA++I+ ++ S+
Sbjct: 210 AQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQ 268
Query: 849 NITYLPAGQSV 881
N YL A V
Sbjct: 269 NRIYLTADNLV 279
>ref|NP_001138303.1| prohibitin-2 isoform 1 [Homo sapiens].
Length = 299
Score = 224 bits (571), Expect = 2e-58
Identities = 121/251 (48%), Positives = 171/251 (68%), Gaps = 1/251 (0%)
Frame = +3
Query: 132 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 308
AVA GV S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGVRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 309 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 488
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 489 AGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTXXXXXXXXXXXXXXX 668
A +LITQR VS + +LTERA F LILDDV++T L+F +E+T
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQR 209
Query: 669 XXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSR 848
F+VEKA+Q+++ I+ AEG+++AA+++ +L + G I+LRK+ AA++I+ ++ S+
Sbjct: 210 AQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQ 268
Query: 849 NITYLPAGQSV 881
N YL A V
Sbjct: 269 NRIYLTADNLV 279
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,091,986
Number of extensions: 2035233
Number of successful extensions: 6635
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6622
Number of HSP's successfully gapped: 3
Length of query: 603
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 495
Effective length of database: 14,737,052
Effective search space: 7294840740
Effective search space used: 7294840740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002279
(1810 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032857.1| prohibitin [Mus musculus]. 470 e-132
Alignment gi|NP_001028937.1| prohibitin-like [Mus musculus]. 449 e-126
Alignment gi|NP_031557.2| prohibitin-2 [Mus musculus]. 224 2e-58
>ref|NP_032857.1| prohibitin [Mus musculus].
Length = 272
Score = 470 bits (1209), Expect = e-132
Identities = 248/266 (93%), Positives = 249/266 (93%)
Frame = +3
Query: 84 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 263
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 264 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 443
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRI+TSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLP 120
Query: 444 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 623
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 180
Query: 624 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 803
FVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK
Sbjct: 181 EAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 240
Query: 804 LEAAEDIAYQLSRSRNITYLPAGQSV 881
LEAAEDIAYQLSRSRNITYLPAGQSV
Sbjct: 241 LEAAEDIAYQLSRSRNITYLPAGQSV 266
>ref|NP_001028937.1| prohibitin-like [Mus musculus].
Length = 271
Score = 449 bits (1156), Expect = e-126
Identities = 233/266 (87%), Positives = 245/266 (92%)
Frame = +3
Query: 84 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 263
MAAKVFESIGKFGLALAVAGGVV+SALYNVDAGHRAVIFDRF GVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVSSALYNVDAGHRAVIFDRFHGVQDIVVGEGTHFLIPW 60
Query: 264 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 443
VQKP+IFDCRS+PRN+PVITGSKDLQNVNITLRILFRPVASQLP I+T+IG+DYDERVLP
Sbjct: 61 VQKPVIFDCRSQPRNIPVITGSKDLQNVNITLRILFRPVASQLPHIYTNIGQDYDERVLP 120
Query: 444 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 623
SIT+EILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT
Sbjct: 121 SITSEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 180
Query: 624 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 803
FVVEKAEQQK AAIISAEGD+KAAELIANSLATAGDGLIELRK
Sbjct: 181 EAVEAKQVAQQEAETARFVVEKAEQQKVAAIISAEGDAKAAELIANSLATAGDGLIELRK 240
Query: 804 LEAAEDIAYQLSRSRNITYLPAGQSV 881
LEAAEDIAYQLSRS+N+TYLP GQ+V
Sbjct: 241 LEAAEDIAYQLSRSQNVTYLPVGQTV 266
>ref|NP_031557.2| prohibitin-2 [Mus musculus].
Length = 299
Score = 224 bits (571), Expect = 2e-58
Identities = 121/251 (48%), Positives = 171/251 (68%), Gaps = 1/251 (0%)
Frame = +3
Query: 132 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 308
AVA GV S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGVRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 309 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 488
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 489 AGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTXXXXXXXXXXXXXXX 668
A +LITQR VS + +LTERA F LILDDV++T L+F +E+T
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQR 209
Query: 669 XXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSR 848
F+VEKA+Q+++ I+ AEG+++AA+++ +L + G I+LRK+ AA++I+ ++ S+
Sbjct: 210 AQFLVEKAKQEQRQKIVQAEGEAEAAKMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQ 268
Query: 849 NITYLPAGQSV 881
N YL A V
Sbjct: 269 NRIYLTADNLV 279
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 61,032,482
Number of extensions: 1707006
Number of successful extensions: 5691
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5668
Number of HSP's successfully gapped: 3
Length of query: 603
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 496
Effective length of database: 12,403,707
Effective search space: 6152238672
Effective search space used: 6152238672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002279
(1810 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131605.2| PREDICTED: prohibitin-like [Sus scrofa]. 429 e-120
Alignment gi|XP_003131608.2| PREDICTED: prohibitin-like [Sus scrofa]. 331 9e-91
Alignment gi|NP_001230485.1| prohibitin 2 [Sus scrofa]. 223 3e-58
>ref|XP_003131605.2| PREDICTED: prohibitin-like [Sus scrofa].
Length = 263
Score = 429 bits (1104), Expect = e-120
Identities = 229/266 (86%), Positives = 233/266 (87%)
Frame = +3
Query: 84 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 263
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 264 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 443
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 444 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 623
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFT 180
Query: 624 XXXXXXXXXXXXXXXXXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRK 803
FVVEK +SA+ D ++ NSLATAGDGLIELRK
Sbjct: 181 EAVEAKQVAQQEAERARFVVEK---------VSAQPDGRSPSXXXNSLATAGDGLIELRK 231
Query: 804 LEAAEDIAYQLSRSRNITYLPAGQSV 881
LEAAEDIAYQLSRSRNITYLPAGQSV
Sbjct: 232 LEAAEDIAYQLSRSRNITYLPAGQSV 257
>ref|XP_003131608.2| PREDICTED: prohibitin-like [Sus scrofa].
Length = 232
Score = 331 bits (848), Expect = 9e-91
Identities = 170/170 (100%), Positives = 170/170 (100%)
Frame = +3
Query: 84 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 263
MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW
Sbjct: 1 MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPW 60
Query: 264 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 443
VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP
Sbjct: 61 VQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLP 120
Query: 444 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 593
SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL
Sbjct: 121 SITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSL 170
>ref|NP_001230485.1| prohibitin 2 [Sus scrofa].
Length = 299
Score = 223 bits (568), Expect = 3e-58
Identities = 120/251 (47%), Positives = 170/251 (67%), Gaps = 1/251 (0%)
Frame = +3
Query: 132 AVAGGVVNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRN 308
AVA G+ S ++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR
Sbjct: 31 AVAYGIRES-VFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRK 89
Query: 309 VPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFD 488
+ TGSKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+
Sbjct: 90 ISSPTGSKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFN 149
Query: 489 AGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTXXXXXXXXXXXXXXX 668
A +LITQR VS + +LTERA F LILDDV++T L+F +E+T
Sbjct: 150 ASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQR 209
Query: 669 XXFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSR 848
F+VEKA+Q+++ I+ AEG+++AA ++ +L + G I+LRK+ AA++I+ ++ S+
Sbjct: 210 AQFLVEKAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQ 268
Query: 849 NITYLPAGQSV 881
N YL A V
Sbjct: 269 NRIYLTADNLV 279
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,531,931
Number of extensions: 1303803
Number of successful extensions: 4435
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4427
Number of HSP's successfully gapped: 3
Length of query: 603
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 498
Effective length of database: 8,729,747
Effective search space: 4347414006
Effective search space used: 4347414006
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002279
(1810 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 2147 0.0
gb|JH118661.1| Sus scrofa unplaced genomic scaffold ChrUScaf1520 1435 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 2147 bits (1083), Expect = 0.0
Identities = 1097/1104 (99%)
Strand = Plus / Minus
Query: 688 aggctgagcagcagaagaaggcagccatcatctccgccgagggcgactccaaggcggcgg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25537016 aggctgagcagcagaagaaggcagccatcatctccgccgagggcgactccaaggcggcgg 25536957
Query: 748 agctgatcgccaactcgctggccactgcgggcgacggcctcatcgagctgcgcaagctgg 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536956 agctgatcgccaactcgctggccactgcgggcgacggcctcatcgagctgcgcaagctgg 25536897
Query: 808 aggccgcggaggacatcgcgtaccagctgtcacgctcccggaacatcacctacctgccgg 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536896 aggccgcggaggacatcgcgtaccagctgtcacgctcccggaacatcacctacctgccgg 25536837
Query: 868 ccggccagtcggtgctcctccagctgccgcagtgaggcccgcccctcccggggccactgg 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536836 ccggccagtcggtgctcctccagctgccgcagtgaggcccgcccctcccggggccactgg 25536777
Query: 928 accccagccccggtgatctcagccgctccttccttctcccaccccagaaatcactgtgaa 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536776 accccagccccggtgatctcagccgctccttccttctcccaccccagaaatcactgtgaa 25536717
Query: 988 acttcatgattggcttaaagtgaaggaaataaaagtaaaatcacttcggatttctaatta 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536716 acttcatgattggcttaaagtgaaggaaataaaagtaaaatcacttcggatttctaatta 25536657
Query: 1048 ctctatcagacgaagctctttcattcctctcatttccatcccctctttttatccacctcc 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536656 ctctatcagacgaagctctttcattcctctcatttccatcccctctttttatccacctcc 25536597
Query: 1108 ccaccaaaaattgccaagtgcctatgcacacccacttggctcccgtctcgggggcctgct 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536596 ccaccaaaaattgccaagtgcctatgcacacccacttggctcccgtctcgggggcctgct 25536537
Query: 1168 ggcgctcccacctaggcactggcaatgggcagaagagaggcagggctgtgagtgggacga 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536536 ggcgctcccacctaggcactggcaatgggcagaagagaggcagggctgtgagtgggacga 25536477
Query: 1228 gccgggcaggacgctggtggcctccaaccgatcagtcattcaagacctgaggcccatgca 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536476 gccgggcaggacgctggtggcctccaaccgatcagtcattcaagacctgaggcccatgca 25536417
Query: 1288 gctgaactgcgaacacaggcctcggnnnnnnnccagtggtccctgcacagagaggtgctg 1347
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 25536416 gctgaactgcgaacacaggcctcggtttttttccagtggtccctgcacagagaggtgctg 25536357
Query: 1348 gggagggtccgagaggaagcgatctgtctctcagcataaggctgattctctttaactggg 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536356 gggagggtccgagaggaagcgatctgtctctcagcataaggctgattctctttaactggg 25536297
Query: 1408 gccagcggaagcaggtgtgtacaaccgacgtggactgaaaactctgcccctgtgaaggtg 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536296 gccagcggaagcaggtgtgtacaaccgacgtggactgaaaactctgcccctgtgaaggtg 25536237
Query: 1468 ggtgggcctgatgtgctgcccctcagggtcctaaaactggagtggactcggctagtgaaa 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536236 ggtgggcctgatgtgctgcccctcagggtcctaaaactggagtggactcggctagtgaaa 25536177
Query: 1528 gagcggccctggaccgagatgtgagtcctgcagacttcctgtccaccccccaccttggtg 1587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536176 gagcggccctggaccgagatgtgagtcctgcagacttcctgtccaccccccaccttggtg 25536117
Query: 1588 tcaagtaccggcggaattccagcttgaaggattgcatcctgccgaggctgcacaggcctg 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536116 tcaagtaccggcggaattccagcttgaaggattgcatcctgccgaggctgcacaggcctg 25536057
Query: 1648 ccaaagacgtgtgcgtcctgcgttcctggctccctcgttcagagactgcccttacagagg 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536056 ccaaagacgtgtgcgtcctgcgttcctggctccctcgttcagagactgcccttacagagg 25535997
Query: 1708 gctctgcgcctgtgccttgaaacaaccaccagaagaaaacaagtgtgtgtaaactgctat 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25535996 gctctgcgcctgtgccttgaaacaaccaccagaagaaaacaagtgtgtgtaaactgctat 25535937
Query: 1768 caataaatgacatccagacctccc 1791
||||||||||||||||||||||||
Sbjct: 25535936 caataaatgacatccagacctccc 25535913
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 171 gtggatgctgggcacagagctgtcatctttgaccggttccgtggtgtgcaggacattgtt 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25545199 gtggatgctgggcacagagctgtcatctttgaccggttccgtggtgtgcaggacattgtt 25545140
Query: 231 gtaggggaagggacgcactttctcatcccttgggtacagaagccaattatctttgactgc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25545139 gtaggggaagggacgcactttctcatcccttgggtacagaagccaattatctttgactgc 25545080
Query: 291 cgctctcgaccacgtaacgtgccagtgatcactggtagcaaag 333
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25545079 cgctctcgaccacgtaacgtgccagtgatcactggtagcaaag 25545037
Score = 291 bits (147), Expect = 7e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 331 aagatttacagaatgtcaacatcaccctgcgtatcctctttcggccggtcgccagccagc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541767 aagatttacagaatgtcaacatcaccctgcgtatcctctttcggccggtcgccagccagc 25541708
Query: 391 tcccccgcatcttcaccagcatcggggaggactacgacgagcgtgtgctgccctccatca 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541707 tcccccgcatcttcaccagcatcggggaggactacgacgagcgtgtgctgccctccatca 25541648
Query: 451 ccacagagatcctcaagtccgtggtgg 477
|||||||||||||||||||||||||||
Sbjct: 25541647 ccacagagatcctcaagtccgtggtgg 25541621
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 476 ggctcgctttgacgctggagaactgatcacccagagagagctggtctccagacaggtgag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541487 ggctcgctttgacgctggagaactgatcacccagagagagctggtctccagacaggtgag 25541428
Query: 536 cgatgacctcacggagcgagcagccacctttgggctcatcctggatgacgtgtctctg 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25541427 cgatgacctcacggagcgagcagccacctttgggctcatcctggatgacgtgtctctg 25541370
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 593 gacgcatctgaccttcggcaaggagttcacagaagcggtggaagccaaacaggtggctca 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25538464 gacgcatctgaccttcggcaaggagttcacagaagcggtggaagccaaacaggtggctca 25538405
Query: 653 gcaggaagcagagagggccagatttgtggtggaaaagg 690
||||||||||||||||||||||||||||||||||||||
Sbjct: 25538404 gcaggaagcagagagggccagatttgtggtggaaaagg 25538367
Score = 178 bits (90), Expect = 7e-42
Identities = 113/118 (95%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 55 aggtgtgagtgggtccagcagaaggagacatggctgccaaggtgtttgagtccatcggca 114
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||
Sbjct: 25547142 aggtgtgagtgggtccagcaaaaggagacatggctgccagagtgtttgagtccatc-gca 25547084
Query: 115 agtttggcctggcc-ttagccgttgcaggaggcgtggtgaactctgccttgtataatg 171
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25547083 agtttggcctggcctttagccgttgcaggaggcgtggtgaactctgccttgtataatg 25547026
Score = 113 bits (57), Expect = 3e-22
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 3 gcatgcgcggtatgtgtggctggggaattcatgtggaggtcagagtggaagcaggtg 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25549057 gcatgcgcggtatgtgtggctggggaattcatgtggaggtcagagtggaagcaggtg 25549001
>gb|JH118661.1| Sus scrofa unplaced genomic scaffold ChrUScaf1520
Length = 34041
Score = 1435 bits (724), Expect = 0.0
Identities = 738/745 (99%)
Strand = Plus / Minus
Query: 757 ccaactcgctggccactgcgggcgacggcctcatcgagctgcgcaagctggaggccgcgg 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5920 ccaactcgctggccactgcgggcgacggcctcatcgagctgcgcaagctggaggccgcgg 5861
Query: 817 aggacatcgcgtaccagctgtcacgctcccggaacatcacctacctgccggccggccagt 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5860 aggacatcgcgtaccagctgtcacgctcccggaacatcacctacctgccggccggccagt 5801
Query: 877 cggtgctcctccagctgccgcagtgaggcccgcccctcccggggccactggaccccagcc 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5800 cggtgctcctccagctgccgcagtgaggcccgcccctcccggggccactggaccccagcc 5741
Query: 937 ccggtgatctcagccgctccttccttctcccaccccagaaatcactgtgaaacttcatga 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5740 ccggtgatctcagccgctccttccttctcccaccccagaaatcactgtgaaacttcatga 5681
Query: 997 ttggcttaaagtgaaggaaataaaagtaaaatcacttcggatttctaattactctatcag 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5680 ttggcttaaagtgaaggaaataaaagtaaaatcacttcggatttctaattactctatcag 5621
Query: 1057 acgaagctctttcattcctctcatttccatcccctctttttatccacctccccaccaaaa 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5620 acgaagctctttcattcctctcatttccatcccctctttttatccacctccccaccaaaa 5561
Query: 1117 attgccaagtgcctatgcacacccacttggctcccgtctcgggggcctgctggcgctccc 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5560 attgccaagtgcctatgcacacccacttggctcccgtctcgggggcctgctggcgctccc 5501
Query: 1177 acctaggcactggcaatgggcagaagagaggcagggctgtgagtgggacgagccgggcag 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5500 acctaggcactggcaatgggcagaagagaggcagggctgtgagtgggacgagccgggcag 5441
Query: 1237 gacgctggtggcctccaaccgatcagtcattcaagacctgaggcccatgcagctgaactg 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440 gacgctggtggcctccaaccgatcagtcattcaagacctgaggcccatgcagctgaactg 5381
Query: 1297 cgaacacaggcctcggnnnnnnnccagtggtccctgcacagagaggtgctggggagggtc 1356
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5380 cgaacacaggcctcggtttttttccagtggtccctgcacagagaggtgctggggagggtc 5321
Query: 1357 cgagaggaagcgatctgtctctcagcataaggctgattctctttaactggggccagcgga 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5320 cgagaggaagcgatctgtctctcagcataaggctgattctctttaactggggccagcgga 5261
Query: 1417 agcaggtgtgtacaaccgacgtggactgaaaactctgcccctgtgaaggtgggtgggcct 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5260 agcaggtgtgtacaaccgacgtggactgaaaactctgcccctgtgaaggtgggtgggcct 5201
Query: 1477 gatgtgctgcccctcagggtcctaa 1501
|||||||||||||||||||||||||
Sbjct: 5200 gatgtgctgcccctcagggtcctaa 5176
Score = 525 bits (265), Expect = e-146
Identities = 265/265 (100%)
Strand = Plus / Minus
Query: 1527 agagcggccctggaccgagatgtgagtcctgcagacttcctgtccaccccccaccttggt 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5075 agagcggccctggaccgagatgtgagtcctgcagacttcctgtccaccccccaccttggt 5016
Query: 1587 gtcaagtaccggcggaattccagcttgaaggattgcatcctgccgaggctgcacaggcct 1646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5015 gtcaagtaccggcggaattccagcttgaaggattgcatcctgccgaggctgcacaggcct 4956
Query: 1647 gccaaagacgtgtgcgtcctgcgttcctggctccctcgttcagagactgcccttacagag 1706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4955 gccaaagacgtgtgcgtcctgcgttcctggctccctcgttcagagactgcccttacagag 4896
Query: 1707 ggctctgcgcctgtgccttgaaacaaccaccagaagaaaacaagtgtgtgtaaactgcta 1766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4895 ggctctgcgcctgtgccttgaaacaaccaccagaagaaaacaagtgtgtgtaaactgcta 4836
Query: 1767 tcaataaatgacatccagacctccc 1791
|||||||||||||||||||||||||
Sbjct: 4835 tcaataaatgacatccagacctccc 4811
Score = 323 bits (163), Expect = 2e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 171 gtggatgctgggcacagagctgtcatctttgaccggttccgtggtgtgcaggacattgtt 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14211 gtggatgctgggcacagagctgtcatctttgaccggttccgtggtgtgcaggacattgtt 14152
Query: 231 gtaggggaagggacgcactttctcatcccttgggtacagaagccaattatctttgactgc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14151 gtaggggaagggacgcactttctcatcccttgggtacagaagccaattatctttgactgc 14092
Query: 291 cgctctcgaccacgtaacgtgccagtgatcactggtagcaaag 333
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14091 cgctctcgaccacgtaacgtgccagtgatcactggtagcaaag 14049
Score = 291 bits (147), Expect = 7e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 331 aagatttacagaatgtcaacatcaccctgcgtatcctctttcggccggtcgccagccagc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10906 aagatttacagaatgtcaacatcaccctgcgtatcctctttcggccggtcgccagccagc 10847
Query: 391 tcccccgcatcttcaccagcatcggggaggactacgacgagcgtgtgctgccctccatca 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10846 tcccccgcatcttcaccagcatcggggaggactacgacgagcgtgtgctgccctccatca 10787
Query: 451 ccacagagatcctcaagtccgtggtgg 477
|||||||||||||||||||||||||||
Sbjct: 10786 ccacagagatcctcaagtccgtggtgg 10760
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 476 ggctcgctttgacgctggagaactgatcacccagagagagctggtctccagacaggtgag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10626 ggctcgctttgacgctggagaactgatcacccagagagagctggtctccagacaggtgag 10567
Query: 536 cgatgacctcacggagcgagcagccacctttgggctcatcctggatgacgtgtctctg 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10566 cgatgacctcacggagcgagcagccacctttgggctcatcctggatgacgtgtctctg 10509
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 593 gacgcatctgaccttcggcaaggagttcacagaagcggtggaagccaaacaggtggctca 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7415 gacgcatctgaccttcggcaaggagttcacagaagcggtggaagccaaacaggtggctca 7356
Query: 653 gcaggaagcagagagggccagatttgtggtggaaaagg 690
||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 gcaggaagcagagagggccagatttgtggtggaaaagg 7318
Score = 113 bits (57), Expect = 3e-22
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 3 gcatgcgcggtatgtgtggctggggaattcatgtggaggtcagagtggaagcaggtg 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15932 gcatgcgcggtatgtgtggctggggaattcatgtggaggtcagagtggaagcaggtg 15876
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,784,011
Number of extensions: 429
Number of successful extensions: 429
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 14
Length of query: 1810
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1788
Effective length of database: 2,808,408,574
Effective search space: 5021434530312
Effective search space used: 5021434530312
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)