Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002280
(1324 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019640.2| 60S ribosomal protein L9 [Bos taurus]. 351 7e-97
Alignment gi|XP_002689975.1| PREDICTED: ribosomal protein L9-like [Bos ta... 350 2e-96
Alignment gi|XP_002705104.1| PREDICTED: ribosomal protein L9-like [Bos ta... 350 2e-96
Alignment gi|XP_002691707.1| PREDICTED: ribosomal protein L9-like [Bos ta... 348 5e-96
Alignment gi|XP_001256310.1| PREDICTED: ribosomal protein L9-like isoform... 348 5e-96
Alignment gi|XP_002692470.1| PREDICTED: ribosomal protein L9-like [Bos ta... 346 2e-95
Alignment gi|XP_001250707.1| PREDICTED: ribosomal protein L9-like isoform... 346 2e-95
Alignment gi|XP_002700001.1| PREDICTED: ribosomal protein L9-like [Bos ta... 343 2e-94
Alignment gi|XP_876470.2| PREDICTED: ribosomal protein L9-like [Bos tauru... 343 2e-94
Alignment gi|XP_002692007.1| PREDICTED: ribosomal protein L9-like [Bos ta... 339 3e-93
>ref|NP_001019640.2| 60S ribosomal protein L9 [Bos taurus].
Length = 192
Score = 351 bits (901), Expect = 7e-97
Identities = 179/192 (93%), Positives = 179/192 (93%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDI LKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_002689975.1| PREDICTED: ribosomal protein L9-like [Bos taurus].
Length = 192
Score = 350 bits (897), Expect = 2e-96
Identities = 178/192 (92%), Positives = 179/192 (93%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDI LKGRTVIVKGPRGTL+RDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLQRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_002705104.1| PREDICTED: ribosomal protein L9-like [Bos taurus].
Length = 192
Score = 350 bits (897), Expect = 2e-96
Identities = 178/192 (92%), Positives = 179/192 (93%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDI LKGRTVIVKGPRGTL+RDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLQRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_002691707.1| PREDICTED: ribosomal protein L9-like [Bos taurus].
Length = 192
Score = 348 bits (894), Expect = 5e-96
Identities = 178/192 (92%), Positives = 178/192 (92%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDI LKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATV TICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61 WGNRKELATVLTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_001256310.1| PREDICTED: ribosomal protein L9-like isoform 1 [Bos taurus].
Length = 192
Score = 348 bits (894), Expect = 5e-96
Identities = 178/192 (92%), Positives = 178/192 (92%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDI LKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATV TICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61 WGNRKELATVLTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_002692470.1| PREDICTED: ribosomal protein L9-like [Bos taurus].
Length = 192
Score = 346 bits (888), Expect = 2e-95
Identities = 176/192 (91%), Positives = 178/192 (92%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDI LKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEI+NF GE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIQNFWGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMRPGVACSVSQAQ+DELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQRDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_001250707.1| PREDICTED: ribosomal protein L9-like isoform 1 [Bos taurus].
Length = 192
Score = 346 bits (888), Expect = 2e-95
Identities = 176/192 (91%), Positives = 178/192 (92%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDI LKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEI+NF GE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIQNFWGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMRPGVACSVSQAQ+DELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQRDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_002700001.1| PREDICTED: ribosomal protein L9-like [Bos taurus].
Length = 192
Score = 343 bits (880), Expect = 2e-94
Identities = 175/192 (91%), Positives = 176/192 (91%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDI +KGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDINVKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF GE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFWGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYI RVRMRPGVACSVSQAQKDELILEGNDIELVSNSA LIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYICRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAVLIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_876470.2| PREDICTED: ribosomal protein L9-like [Bos taurus].
Length = 192
Score = 343 bits (880), Expect = 2e-94
Identities = 175/192 (91%), Positives = 176/192 (91%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDI +KGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDINVKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF GE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFWGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYI RVRMRPGVACSVSQAQKDELILEGNDIELVSNSA LIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYICRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAVLIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_002692007.1| PREDICTED: ribosomal protein L9-like [Bos taurus].
Length = 192
Score = 339 bits (870), Expect = 3e-93
Identities = 174/192 (90%), Positives = 175/192 (91%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTV+IPENVDI LKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVNIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGF YKMRSVYAHFPINVVIQENGSLVEIRNF GE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFPYKMRSVYAHFPINVVIQENGSLVEIRNFGGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYI RVRMRPGVAC VSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIHRVRMRPGVACLVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,897,360
Number of extensions: 1283238
Number of successful extensions: 3349
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3326
Number of HSP's successfully gapped: 13
Length of query: 441
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 336
Effective length of database: 14,207,134
Effective search space: 4773597024
Effective search space used: 4773597024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002280
(1324 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863548.1| PREDICTED: similar to ribosomal protein L9 isof... 353 2e-97
Alignment gi|XP_536256.1| PREDICTED: similar to ribosomal protein L9 isof... 353 2e-97
Alignment gi|XP_536406.2| PREDICTED: similar to ribosomal protein L9 [Can... 314 1e-85
Alignment gi|XP_851364.1| PREDICTED: similar to 60S ribosomal protein L9 ... 145 7e-35
Alignment gi|XP_537272.2| PREDICTED: similar to coiled-coil domain contai... 77 4e-14
Alignment gi|XP_852052.1| PREDICTED: similar to MRDS1 [Canis familiaris]. 55 2e-07
>ref|XP_863548.1| PREDICTED: similar to ribosomal protein L9 isoform 2 [Canis
familiaris].
Length = 192
Score = 353 bits (906), Expect = 2e-97
Identities = 180/192 (93%), Positives = 180/192 (93%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_536256.1| PREDICTED: similar to ribosomal protein L9 isoform 1 [Canis
familiaris].
Length = 192
Score = 353 bits (906), Expect = 2e-97
Identities = 180/192 (93%), Positives = 180/192 (93%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_536406.2| PREDICTED: similar to ribosomal protein L9 [Canis familiaris].
Length = 191
Score = 314 bits (805), Expect = 1e-85
Identities = 163/192 (84%), Positives = 169/192 (88%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSN+TVDIPENVDITLKG TVIVKGPRGTLRR+FNHIN+E DKW
Sbjct: 1 MKTILSNKTVDIPENVDITLKGCTVIVKGPRGTLRRNFNHINIELSLPGKKKRLQ-ADKW 59
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELAT+ TICSHVQNMIKG+TLGF YKMRSVYAHFPINVVIQEN SLVEIRNFLGE
Sbjct: 60 WGNRKELATICTICSHVQNMIKGMTLGFCYKMRSVYAHFPINVVIQENVSLVEIRNFLGE 119
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYI RVRMRPGVACSVSQAQKDELILEGNDIELV NSAA IQQATTVKN+DIRK L GIY
Sbjct: 120 KYIHRVRMRPGVACSVSQAQKDELILEGNDIELVLNSAASIQQATTVKNQDIRKILGGIY 179
Query: 604 VSEKGTVQQADE 639
VSE GTVQQADE
Sbjct: 180 VSENGTVQQADE 191
>ref|XP_851364.1| PREDICTED: similar to 60S ribosomal protein L9 [Canis familiaris].
Length = 103
Score = 145 bits (367), Expect = 7e-35
Identities = 78/114 (68%), Positives = 83/114 (72%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDITLKG TVI+KGPRGTLRRDFNH NVE VDK
Sbjct: 1 MKTILSNQTVDIPENVDITLKGHTVILKGPRGTLRRDFNHNNVEFSLLGKKKKRLRVDKC 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEI 405
+ S VQNMIKG+TLGFRYKM+SVYAHFPIN +IQE GSLVEI
Sbjct: 61 ANS-----------SQVQNMIKGITLGFRYKMKSVYAHFPINAIIQEKGSLVEI 103
>ref|XP_537272.2| PREDICTED: similar to coiled-coil domain containing 5 (spindle
associated) [Canis familiaris].
Length = 375
Score = 77.0 bits (188), Expect = 4e-14
Identities = 36/55 (65%), Positives = 42/55 (76%)
Frame = -2
Query: 204 ETEFYIDVVEVPPQSASGALHNDCASF*CDVDIFWNVDSLIAENGLHSRSRCGKE 40
ET YID VE PPQ +SGALHN+ AS D+D+FWNV SLIAEN LH RS+C K+
Sbjct: 263 ETGIYIDAVESPPQGSSGALHNNSASLQSDMDVFWNVSSLIAENCLHPRSKCVKK 317
>ref|XP_852052.1| PREDICTED: similar to MRDS1 [Canis familiaris].
Length = 155
Score = 54.7 bits (130), Expect = 2e-07
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = -2
Query: 177 EVPPQSASGALHNDCASF*CDVDIFWNVDSLIAENGLHSRSRCGK 43
E+ P+ + + S DVD FWNVDSLIAENGLHS S CGK
Sbjct: 101 EINPRQCGMEVSREAVSLQSDVDTFWNVDSLIAENGLHSHSGCGK 145
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,726,004
Number of extensions: 1258054
Number of successful extensions: 3552
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3512
Number of HSP's successfully gapped: 6
Length of query: 441
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 335
Effective length of database: 15,340,888
Effective search space: 5139197480
Effective search space used: 5139197480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002280
(1324 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000652.2| 60S ribosomal protein L9 [Homo sapiens]. 353 2e-97
Alignment gi|NP_001020092.1| 60S ribosomal protein L9 [Homo sapiens]. 353 2e-97
>ref|NP_000652.2| 60S ribosomal protein L9 [Homo sapiens].
Length = 192
Score = 353 bits (906), Expect = 2e-97
Identities = 180/192 (93%), Positives = 180/192 (93%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|NP_001020092.1| 60S ribosomal protein L9 [Homo sapiens].
Length = 192
Score = 353 bits (906), Expect = 2e-97
Identities = 180/192 (93%), Positives = 180/192 (93%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,657,095
Number of extensions: 1229377
Number of successful extensions: 3514
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3503
Number of HSP's successfully gapped: 2
Length of query: 441
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 335
Effective length of database: 14,802,980
Effective search space: 4958998300
Effective search space used: 4958998300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002280
(1324 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035422.1| 60S ribosomal protein L9 [Mus musculus]. 348 4e-96
Alignment gi|XP_484272.1| PREDICTED: 60S ribosomal protein L9-like [Mus m... 338 4e-93
Alignment gi|XP_003086220.1| PREDICTED: 60S ribosomal protein L9-like [Mu... 331 7e-91
>ref|NP_035422.1| 60S ribosomal protein L9 [Mus musculus].
Length = 192
Score = 348 bits (894), Expect = 4e-96
Identities = 178/192 (92%), Positives = 179/192 (93%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENV+ITLKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMR GVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_484272.1| PREDICTED: 60S ribosomal protein L9-like [Mus musculus].
Length = 192
Score = 338 bits (868), Expect = 4e-93
Identities = 174/192 (90%), Positives = 176/192 (91%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENV+ITLKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINV+IQENGSLVEIRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVLIQENGSLVEIRNFLGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYI RVRMR GVACSVSQAQKDELI EGNDIELVSNSAALIQQATTVKNK IRKFLDGIY
Sbjct: 121 KYICRVRMRTGVACSVSQAQKDELIREGNDIELVSNSAALIQQATTVKNKYIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_003086220.1| PREDICTED: 60S ribosomal protein L9-like [Mus musculus].
Length = 191
Score = 331 bits (849), Expect = 7e-91
Identities = 172/192 (89%), Positives = 175/192 (91%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENV+ITLKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSSWEEKVKLR-VDKW 59
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELA++RTICSHVQNMIKGVTLGFRYKMRSV AHFPINVVIQENG LVEIRNFLGE
Sbjct: 60 WGNRKELASIRTICSHVQNMIKGVTLGFRYKMRSVDAHFPINVVIQENGFLVEIRNFLGE 119
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMR GVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNK IRKFLDGIY
Sbjct: 120 KYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKVIRKFLDGIY 179
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQ DE
Sbjct: 180 VSEKGTVQQTDE 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,586,978
Number of extensions: 1034950
Number of successful extensions: 2859
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2846
Number of HSP's successfully gapped: 3
Length of query: 441
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 337
Effective length of database: 12,493,815
Effective search space: 4210415655
Effective search space used: 4210415655
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002280
(1324 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230410.1| ribosomal protein L9 [Sus scrofa]. 353 1e-97
Alignment gi|XP_003360420.1| PREDICTED: 60S ribosomal protein L9-like [Su... 351 6e-97
Alignment gi|XP_003135239.1| PREDICTED: 60S ribosomal protein L9-like [Su... 351 6e-97
>ref|NP_001230410.1| ribosomal protein L9 [Sus scrofa].
Length = 192
Score = 353 bits (906), Expect = 1e-97
Identities = 180/192 (93%), Positives = 180/192 (93%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_003360420.1| PREDICTED: 60S ribosomal protein L9-like [Sus scrofa].
Length = 192
Score = 351 bits (900), Expect = 6e-97
Identities = 178/192 (92%), Positives = 179/192 (93%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGF YKMRSVYAHFPIN+VIQENGSLVEIRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFHYKMRSVYAHFPINIVIQENGSLVEIRNFLGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
>ref|XP_003135239.1| PREDICTED: 60S ribosomal protein L9-like [Sus scrofa].
Length = 192
Score = 351 bits (900), Expect = 6e-97
Identities = 178/192 (92%), Positives = 179/192 (93%)
Frame = +1
Query: 64 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE VDKW
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
WGNRKELATVRTICSHVQNMIKGVTLGF YKMRSVYAHFPIN+VIQENGSLVEIRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFHYKMRSVYAHFPINIVIQENGSLVEIRNFLGE 120
Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 604 VSEKGTVQQADE 639
VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,248,379
Number of extensions: 940488
Number of successful extensions: 2120
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2113
Number of HSP's successfully gapped: 3
Length of query: 441
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 339
Effective length of database: 8,804,438
Effective search space: 2984704482
Effective search space used: 2984704482
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002280
(1324 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 1360 0.0
Sscrofa_Chr09 795 0.0
Sscrofa_Chr05 720 0.0
Sscrofa_Chr08 710 0.0
Sscrofa_Chr11 634 e-179
gb|GL893383.2| Sus scrofa unplaced genomic scaffold ChrUScaf1268 626 e-177
Sscrofa_Chr12 450 e-124
Sscrofa_Chr14 448 e-123
Sscrofa_Chr13 414 e-113
gb|GL892798.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 230 2e-57
>Sscrofa_ChrX
|| Length = 144288218
Score = 1360 bits (686), Expect = 0.0
Identities = 698/702 (99%)
Strand = Plus / Minus
Query: 39 gctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacat 98
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 69087494 gctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgttgacat 69087435
Query: 99 tccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagagg 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69087434 tccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagagg 69087375
Query: 159 cactctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaa 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69087374 cactctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaa 69087315
Query: 219 gaagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcac 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69087314 gaagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcac 69087255
Query: 279 catctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgttacaagat 338
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 69087254 catctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccattacaagat 69087195
Query: 339 gaggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctcttgt 398
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 69087194 gaggtctgtgtatgctcacttccccatcaacatcgttattcaggagaatggttctcttgt 69087135
Query: 399 tgaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggggt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69087134 tgaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggggt 69087075
Query: 459 tgcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatgacattga 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69087074 tgcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatgacattga 69087015
Query: 519 acttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaggatat 578
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 69087014 acttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaagatat 69086955
Query: 579 cagaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgatga 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69086954 cagaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgatga 69086895
Query: 639 gtaagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacattc 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69086894 gtaagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacattc 69086835
Query: 699 atttgtgatgttttacgatacaataaaaagtctattgactta 740
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69086834 atttgtgatgttttacgatacaataaaaagtctattgactta 69086793
Score = 918 bits (463), Expect = 0.0
Identities = 643/701 (91%), Gaps = 4/701 (0%)
Strand = Plus / Plus
Query: 40 ctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacatt 99
||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct: 64220650 ctctttgccacatctactgcgagaatgaagaccattctcaaccatcagactgtcgacctt 64220709
Query: 100 ccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagaggc 159
|||||||||||| ||||||| || |||||| ||||||||||||||||||||||| ||||
Sbjct: 64220710 ccagaaaatgtcaacatcactctgaaaggatccacagtcattgtgaagggccccataggc 64220769
Query: 160 actctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaag 219
||||||| ||| |||||||||||||| |||| ||||||||| |||||||| || ||||||
Sbjct: 64220770 actctgaagagagacttcaaccacattaatgcagaactcagactccttgggaaaaaaaag 64220829
Query: 220 aagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcacc 279
|||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 64220830 aagaggctccaggttgacaaatggtgggaaaatagaaaggaactggctactgttcgcacc 64220889
Query: 280 atctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgttacaagatg 339
|||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 64220890 atctgtagtcatatacagaatatgatcaagggtgttacactgagcttccattacaagatg 64220949
Query: 340 aggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctcttgtt 399
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 64220950 aggtctgtgtatgctcacttccccatcaacgttgttattcaggagaatgattctcttgtt 64221009
Query: 400 gaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggggtt 459
||||||| ||||||| || ||||||||| |||| |||||| |||||||||||||||||
Sbjct: 64221010 gaaatccaaaattttggggatgaaaaatacatccacagggtctggatgaggccaggggtt 64221069
Query: 460 gcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatgacattgaa 519
|||| ||||||| ||| || |||||||||||||||||||||||| ||||| ||||||||
Sbjct: 64221070 gcttattcagtaactc-aggccagaaagatgagctgattttagacggaaacaacattgaa 64221128
Query: 520 cttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaggatatc 579
|||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct: 64221129 cttgtatcaaattcagctgctttgattcagcaagccacaatagttaagaaaaagaatatt 64221188
Query: 580 agaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgatgag 639
|||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||
Sbjct: 64221189 ggaaaatttttggatggtatctatgtttccaaaaaaggaacagttcagaaggttgacgag 64221248
Query: 640 taagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacattca 699
|||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct: 64221249 taagatctgagttgtcccagctacaga---aacaagatgccagatgattcttcagattca 64221305
Query: 700 tttgtgatgttttacgatacaataaaaagtctattgactta 740
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 64221306 tttgtgatgttttactatacaataaaaagtctattgactta 64221346
Score = 918 bits (463), Expect = 0.0
Identities = 643/701 (91%), Gaps = 4/701 (0%)
Strand = Plus / Minus
Query: 40 ctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacatt 99
||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct: 64355850 ctctttgccacatctactgcgagaatgaagaccattctcaaccatcagactgtcgacctt 64355791
Query: 100 ccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagaggc 159
|||||||||||| ||||||| || |||||| ||||||||||||||||||||||| ||||
Sbjct: 64355790 ccagaaaatgtcaacatcactctgaaaggatccacagtcattgtgaagggccccataggc 64355731
Query: 160 actctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaag 219
||||||| ||| |||||||||||||| |||| ||||||||| |||||||| || ||||||
Sbjct: 64355730 actctgaagagagacttcaaccacattaatgcagaactcagactccttgggaaaaaaaag 64355671
Query: 220 aagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcacc 279
|||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 64355670 aagaggctccaggttgacaaatggtgggaaaatagaaaggaactggctactgttcgcacc 64355611
Query: 280 atctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgttacaagatg 339
|||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 64355610 atctgtagtcatatacagaatatgatcaagggtgttacactgagcttccattacaagatg 64355551
Query: 340 aggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctcttgtt 399
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 64355550 aggtctgtgtatgctcacttccccatcaacgttgttattcaggagaatgattctcttgtt 64355491
Query: 400 gaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggggtt 459
||||||| ||||||| || ||||||||| |||| |||||| |||||||||||||||||
Sbjct: 64355490 gaaatccaaaattttggggatgaaaaatacatccacagggtctggatgaggccaggggtt 64355431
Query: 460 gcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatgacattgaa 519
|||| ||||||| ||| || |||||||||||||||||||||||| ||||| ||||||||
Sbjct: 64355430 gcttattcagtaactc-aggccagaaagatgagctgattttagacggaaacaacattgaa 64355372
Query: 520 cttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaggatatc 579
|||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct: 64355371 cttgtatcaaattcagctgctttgattcagcaagccacaatagttaagaaaaagaatatt 64355312
Query: 580 agaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgatgag 639
|||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||
Sbjct: 64355311 ggaaaatttttggatggtatctatgtttccaaaaaaggaacagttcagaaggttgacgag 64355252
Query: 640 taagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacattca 699
|||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct: 64355251 taagatctgagttgtcccagctacaga---aacaagatgccagatgattcttcagattca 64355195
Query: 700 tttgtgatgttttacgatacaataaaaagtctattgactta 740
||||||||||||||| |||||||||||||||||||||||||
Sbjct: 64355194 tttgtgatgttttactatacaataaaaagtctattgactta 64355154
>Sscrofa_Chr09
|| Length = 153670197
Score = 795 bits (401), Expect = 0.0
Identities = 624/694 (89%), Gaps = 7/694 (1%)
Strand = Plus / Plus
Query: 39 gctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacat 98
|||||||||||||||||||||||| | |||| |||||| ||||||||||||||| |||
Sbjct: 7459680 gctctttgccgcatctactgcgaggaggaagcccattcccagcaatcagactgttgacgg 7459739
Query: 99 tccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagagg 158
||||| ||||||||||||| | ||||||||| || | | || | |||||||||| | ||
Sbjct: 7459740 tccaggaaatgtcgacatccctctaaaaggatgcgcggccacggagaagggcccccgggg 7459799
Query: 159 cactctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaa 218
|||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7459800 cact--gaggagggacttcgaccacatcagtgtagaactcagtctccttggaaagaaaaa 7459857
Query: 219 gaagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcac 278
|| ||||||||||||||||| ||||||||||||||||||||||||| || | ||||||
Sbjct: 7459858 ga---ggctccgggttgacaaacggtggggaaatagaaaggaactggctacgggtcgcac 7459914
Query: 279 catctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgttacaagat 338
| |||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||
Sbjct: 7459915 cctctgtagtcacacacagaatatgatccagggtgtcacactgggcg-ccgttacaagat 7459973
Query: 339 gaggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctcttgt 398
|||| |||||||||| ||| |||||| | ||||||| || ||||||||||| ||||||||
Sbjct: 7459974 gagggctgtgtatgcgcacatccccacccacgtcgtgatgcaggagaatggctctcttgt 7460033
Query: 399 tgaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggggt 458
||||||||||| ||||||| ||||||||| |||||||||||| |||||||||||| |||
Sbjct: 7460034 tgaaatccgaatttttttgcatgaaaaatacatccgcagggtttggatgaggccagaggt 7460093
Query: 459 tgcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatgacattga 518
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 7460094 tgcttgtttagtatctcaagcccagacagatgagctgattttagaaggaa-tgacattga 7460152
Query: 519 acttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaggatat 578
||||||||||||| ||||||||||| ||||||||| |||||| ||||||||||||| ||
Sbjct: 7460153 acttgtatcaaatccagctgctttggttcagcaagtcacaaccattaagaacaaggagat 7460212
Query: 579 cagaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgatga 638
||| || ||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 7460213 gggaacatatttggatggtatctatgtttctgaaaaaggaaccgttcagcaggcagatga 7460272
Query: 639 gtaagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacattc 698
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7460273 gtaagatttgagttgtcccggctacagaaacaacaagatgccagatgatagttcacattc 7460332
Query: 699 atttgtgatgttttacgatacaataaaaagtcta 732
|||||||||||||||| |||||||||||||||||
Sbjct: 7460333 atttgtgatgttttacaatacaataaaaagtcta 7460366
Score = 620 bits (313), Expect = e-175
Identities = 538/611 (88%), Gaps = 14/611 (2%)
Strand = Plus / Minus
Query: 142 gtgaagggccccagaggcactctgaggagggacttcaaccacatcaatgtagaactcagt 201
||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 81725747 gtgaagggccccagaggcactctgaagaggcactagaaccacatcaatgtagaactcagt 81725688
Query: 202 ctccttggaaagaaaaagaagaggctccgggttgacaaatggtggggaaatagaaaggaa 261
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 81725687 ctccttggaaagaaaaagaagaggctccaggttgacaaatggtggggaactagaaaggaa 81725628
Query: 262 ct---ggcaactgttcg---------caccatctgtagtcatgtacagaatatgatcaag 309
|| ||| |||| ||| |||||||||||||||||||| |||||||||
Sbjct: 81725627 ctactggctgtagttcagtagttccacactatctgtagtcatgtacagaacatgatcaag 81725568
Query: 310 ggtgttacactgggcttccgttacaagatgaggtctgtgtatgctcacttccccatcaac 369
|| || |||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 81725567 gg-gtaacactgggcttctgttccaagatgaggtctgtgtatgctctcttccccatcaac 81725509
Query: 370 gtcgttattcaggagaatggttctcttgttgaaatccgaaattttttgggtgaaaaatat 429
||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 81725508 gtcattattcaggagaatggttctcttgttgaaatccaaaattttgggggtgaaaaatac 81725449
Query: 430 atccgcagggttcggatgaggccaggggttgcttgttcagtatctcaagcccagaaagat 489
||| | | ||||| |||||||| | |||||||||||||||||||||| | |||||||||
Sbjct: 81725448 atctgtatggttcagatgaggctggtggttgcttgttcagtatctcaaacgcagaaagat 81725389
Query: 490 gagctgattttagaaggaaatgacattgaacttgtatcaaattcagctgctttgattcag 549
||||||||| | |||||||| | |||||||||||| ||||||||||||||||||||||
Sbjct: 81725388 gagctgattcttgaaggaaacagccttgaacttgtataaaattcagctgctttgattcag 81725329
Query: 550 caagccacaactgttaagaacaaggatatcagaaaatttttggatggtatctatgtttct 609
|||||||||| |||||||||||||||||| |||||||||||||| ||||| | |||||
Sbjct: 81725328 caagccacaaaagttaagaacaaggatatctgaaaatttttggatcatatctctatttct 81725269
Query: 610 gaaaaaggaacagttcagcaggctgatgagtaagatttgagttgtcccggctacagaaac 669
|| ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct: 81725268 gagaaaggaacagttcagcaggctgatgagtaagatctgtgttgt-atggctacagaaac 81725210
Query: 670 aacaagatgccagatgattcttcacattcatttgtgatgttttacgatacaataaaaagt 729
| ||||||||||||| |||||| | || ||||||||||||| |||||||||||||||
Sbjct: 81725209 atcaagatgccagataattctttggactcccttgtgatgttttaagatacaataaaaagt 81725150
Query: 730 ctattgactta 740
|||||||||||
Sbjct: 81725149 ctattgactta 81725139
Score = 591 bits (298), Expect = e-166
Identities = 495/559 (88%), Gaps = 5/559 (0%)
Strand = Plus / Plus
Query: 182 acatcaatgtagaactcagtctccttggaaagaaaaagaagaggctccgggttgacaaat 241
||||| |||||| |||| ||||||||||||||||||||||||||||||||| || || ||
Sbjct: 29896748 acatccatgtaggactccgtctccttggaaagaaaaagaagaggctccgggctggcacat 29896807
Query: 242 ggtggggaaatagaaaggaactggcaactgttcgcaccatctgtagtcatgtacagaata 301
||||||| |||||||| |||| || |||| | |||||||||||||||| | || |
Sbjct: 29896808 ggtggggcaatagaaatgaaccagccactgctggcaccatctgtagtcacccgcgtaaca 29896867
Query: 302 tgatcaagggtgttacactgggcttccgttacaagatgaggtctgtgtatgctcacttcc 361
|||||||| ||||||| ||||||| || |||||||||||||||||||||||||||| |||
Sbjct: 29896868 tgatcaagcgtgttaccctgggctccccttacaagatgaggtctgtgtatgctcacctcc 29896927
Query: 362 ccatcaacgtcgttattcaggagaatggttctcttgttgaaatccgaaattttttgggtg 421
|| ||| |||| |||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct: 29896928 ccgtcagcgtccttattcaggagaatggttctcttgttgaaatctgaaattttttagggg 29896987
Query: 422 aaaaatatatccgcagggttcggatgaggccaggggttgcttgttcagtatctcaagccc 481
||||||| || |||||||| ||||||||||| | |||||||||||| |||||||||||
Sbjct: 29896988 aaaaatacctctgcagggtttggatgaggccacag-ttgcttgttcagcatctcaagccc 29897046
Query: 482 agaaagatgagctgattttagaaggaaatgacattgaacttgtatcaaattcagctgctt 541
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 29897047 agaaagatgagctgattttagaaggaaacgacattgaacttgtatcaaa----gctgctt 29897102
Query: 542 tgattcagcaagccacaactgttaagaacaaggatatcagaaaatttttggatggtatct 601
|||||||||||||||| || | || | |||||||||||||||||||||||| |||||||
Sbjct: 29897103 tgattcagcaagccacgacagctaccagcaaggatatcagaaaatttttggagggtatct 29897162
Query: 602 atgtttctgaaaaaggaacagttcagcaggctgatgagtaagatttgagttgtcccggct 661
||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 29897163 atgtttctgaaaaaggaacagttcagcaggctgctgagtattctctgagttgtcccggct 29897222
Query: 662 acagaaacaacaagatgccagatgattcttcacattcatttgtgatgttttacgatacaa 721
|||||||||||||||||| ||||||| |||| || ||||||| |||||||| |||||||
Sbjct: 29897223 acagaaacaacaagatgctagatgatgcttctgatgcatttgtcatgttttatgatacaa 29897282
Query: 722 taaaaagtctattgactta 740
|||||||||||||| ||||
Sbjct: 29897283 taaaaagtctattggctta 29897301
Score = 115 bits (58), Expect = 6e-23
Identities = 61/62 (98%)
Strand = Plus / Minus
Query: 41 tctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacattc 100
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81725826 tctttgctgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacattc 81725767
Query: 101 ca 102
||
Sbjct: 81725766 ca 81725765
>Sscrofa_Chr05
|| Length = 111506441
Score = 720 bits (363), Expect = 0.0
Identities = 624/706 (88%), Gaps = 5/706 (0%)
Strand = Plus / Minus
Query: 39 gctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacat 98
|||||||||| ||||| || ||||||||| |||| ||||||||||||||||||| ||
Sbjct: 79912201 gctctttgccacatctccttcgagaatgacaaccaccctcagcaatcagactgtcgccac 79912142
Query: 99 tccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagagg 158
||| ||||| ||| ||||||| |||||||||| ||| || || | |||||| ||||||||
Sbjct: 79912141 tccggaaaaagtcaacatcactctaaaaggacacaccgttatcgcgaagggtcccagagg 79912082
Query: 159 cactctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaa 218
||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 79912081 tactctgaggagagacttcaaccacatcaatgtggaactcagtctctttggaaagaaaaa 79912022
Query: 219 gaagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcac 278
|||||||||| |||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct: 79912021 gaagaggctctgggttgacaaatggtgggaaaatagaaaggaactggctactgtcggcac 79911962
Query: 279 catctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgttacaagat 338
|||||||||||||||||||| ||||||||||| |||| | ||||||| | |||| |||
Sbjct: 79911961 tgtctgtagtcatgtacagaatgtgatcaagggtattacgccgggcttctgctacacgat 79911902
Query: 339 gaggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctcttgt 398
||||||||||| ||||||| | ||||||||| || |||||||| ||||||||||||||||
Sbjct: 79911901 gaggtctgtgtgtgctcacattcccatcaacatcattattcagaagaatggttctcttgt 79911842
Query: 399 tgaaatccgaaatttt-ttgggtgaaaaatatatccgcagggttcggatgaggccagggg 457
||||||||| |||||| |||| |||| || ||||||||||||| ||||||||||||||
Sbjct: 79911841 tgaaatccggaattttggggggtaaaaagtacatccgcagggttcagatgaggccagggg 79911782
Query: 458 ttgcttgttcagtatctc--aagcccagaaagatgagctgattttagaaggaaatgacat 515
||||||||||||| |||| ||||| ||||||||||| ||| | |||||||| ||||
Sbjct: 79911781 ttgcttgttcagtgtctcaaaagcctagaaagatgagtcaattcttgaaggaaacaacat 79911722
Query: 516 tgaacttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaagga 575
|||||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct: 79911721 ggaacttgtatgaaattcagctgctttgattcagcgagccacagcagttaagaacaagga 79911662
Query: 576 tatcagaaaatttttggatggt-atctatgtttctgaaaaaggaacagttcagcaggctg 634
|||||||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct: 79911661 tatcagaaaaattttggatggtcatctacgtttctgaaaaaggaaaagttcagcaggctg 79911602
Query: 635 atgagtaagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcac 694
||||||||||| |||||||| || | ||| |||||| ||| ||||||||||||||||||
Sbjct: 79911601 atgagtaagatctgagttgt-ccagttacggaaacagcaaaatgccagatgattcttcag 79911543
Query: 695 attcatttgtgatgttttacgatacaataaaaagtctattgactta 740
| ||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 79911542 actcatttgagatgttttaagatacaataaaaagtctattgactta 79911497
>Sscrofa_Chr08
|| Length = 148491826
Score = 710 bits (358), Expect = 0.0
Identities = 612/692 (88%), Gaps = 11/692 (1%)
Strand = Plus / Plus
Query: 44 ttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacattccag 103
|||| |||||||||| ||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct: 89171334 ttgctgcatctactgagagaatgaagaccattctcagaaatcagactgttgacatttcag 89171393
Query: 104 aaaat-gtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagaggcact 162
||||| ||| ||||| | ||||||||| |||||| ||||||||| |||||||||||||
Sbjct: 89171394 aaaattgtcaacatccctctaaaaggatgcacagctattgtgaag--ccccagaggcact 89171451
Query: 163 ctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaagaag 222
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 89171452 ctgaggagggactttgaccacatcaatgtagaactcaatctccttggaaagaaaaagaag 89171511
Query: 223 aggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcaccatc 282
| |||| |||| |||||||| ||||||||||||||||||||| | |||||| ||| ||
Sbjct: 89171512 aagctctgggtcgacaaatgatggggaaatagaaaggaactgactgctgttcacactatt 89171571
Query: 283 tgtagtcatgtacagaatatgatcaagggtgttacactgggcttccg------ttacaag 336
||||||||| ||||||| | |||||||| ||| |||||||||||| | ||||| |
Sbjct: 89171572 tgtagtcatatacagaacacgatcaaggatgtaacactgggcttcggcttctgttaca-g 89171630
Query: 337 atgaggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctctt 396
||||||||||||||||||||||||||||||| |||| |||||||| || |||||||||||
Sbjct: 89171631 atgaggtctgtgtatgctcacttccccatcagcgtccttattcagaaggatggttctctt 89171690
Query: 397 gttgaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggg 456
|||||||||| | ||||| |||||||||||| || | ||| ||| |||||||||||||
Sbjct: 89171691 gttgaaatccaatattttgggggtgaaaaatacattcacagcattcagatgaggccaggg 89171750
Query: 457 gttgcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatgacatt 516
|||||||||||| |||||| |||||||||||||||| ||||| | |||||||||||||||
Sbjct: 89171751 gttgcttgttcaatatctccagcccagaaagatgagttgattcttgaaggaaatgacatt 89171810
Query: 517 gaacttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaggat 576
||||||||||||||||| |||||||||||||||||||||||||| | | |||||||||||
Sbjct: 89171811 gaacttgtatcaaattcggctgctttgattcagcaagccacaacagctgagaacaaggat 89171870
Query: 577 atcagaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgat 636
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 89171871 attggaaaatttttggatggtatctatgtttctgaaaaaggaacagttcatcaggctgat 89171930
Query: 637 gagtaagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacat 696
|||| |||| |||||||| | || ||||| ||||||||||||||||||||| ||| |
Sbjct: 89171931 gagtgagatctgagttgt-ttgtctccagaatcaacaagatgccagatgattcctcagac 89171989
Query: 697 tcatttgtgatgttttacgatacaataaaaag 728
||||||||||| ||||| ||||| ||||||||
Sbjct: 89171990 tcatttgtgatattttaagatacgataaaaag 89172021
Score = 268 bits (135), Expect = 7e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 321 gggcttccgttacaagatgaggtctgtgtatgctcacttccccatcaacgtcgttattca 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32310791 gggcttccgttacaagatgaggtctgtgtatgctcacttccccatcaacgtcgttattca 32310732
Query: 381 ggagaatggttctcttgttgaaatccgaaattttttgggtgaaaaatatatccgcagggt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32310731 ggagaatggttctcttgttgaaatccgaaattttttgggtgaaaaatatatccgcagggt 32310672
Query: 441 tcggatgaggccagg 455
|||||||||||||||
Sbjct: 32310671 tcggatgaggccagg 32310657
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 534 agctgctttgattcagcaagccacaactgttaagaacaaggatatcagaaaatttttgga 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32309519 agctgctttgattcagcaagccacaactgttaagaacaaggatatcagaaaatttttgga 32309460
Query: 594 tggtatctatgtttctgaaaaaggaacagttcagcaggctgatgagtaagatttgag 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32309459 tggtatctatgtttctgaaaaaggaacagttcagcaggctgatgagtaagatttgag 32309403
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 109 gtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagaggcactctgagg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32313610 gtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagaggcactctgagg 32313551
Query: 169 agggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaagaagagg 225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32313550 agggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaagaagagg 32313494
Score = 186 bits (94), Expect = 2e-44
Identities = 97/98 (98%)
Strand = Plus / Minus
Query: 225 gctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcaccatctg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32312505 gctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcaccatctg 32312446
Query: 285 tagtcatgtacagaatatgatcaagggtgttacactgg 322
|||||| |||||||||||||||||||||||||||||||
Sbjct: 32312445 tagtcacgtacagaatatgatcaagggtgttacactgg 32312408
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 649 agttgtcccggctacagaaacaacaagatgccagatgattcttcacattcatttgtgatg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32309122 agttgtcccggctacagaaacaacaagatgccagatgattcttcacattcatttgtgatg 32309063
Query: 709 ttttacgatacaataaaaagtctattgactta 740
||||||||||||||||||||||||||||||||
Sbjct: 32309062 ttttacgatacaataaaaagtctattgactta 32309031
Score = 168 bits (85), Expect = 5e-39
Identities = 346/429 (80%), Gaps = 8/429 (1%)
Strand = Plus / Plus
Query: 203 tccttggaaagaaaaagaagaggctccgggttgacaaatggtggggaaatagaaaggaac 262
|||||||||||| ||||| ||||||| | |||||||| | ||||||||| ||||||||
Sbjct: 60466409 tccttggaaagagaaagaggaggctctgaattgacaaactggggggaaataaaaaggaac 60466468
Query: 263 tggcaactgttcgcaccatctgtagtcatgtacagaatatgatcaagggtgttacactgg 322
|||| || || | | |||| |||||||| ||||||| ||||||| || | | ||||
Sbjct: 60466469 tggctaccttttgtgctatctttagtcatgcacagaatgtgatcaaaggaatgatgctgg 60466528
Query: 323 gcttccgttacaagatgaggtctgtgtatgctcacttccccatcaacgtcgttattcagg 382
|||| ||| ||||||||| | || ||||| || |||||| | | ||| ||||
Sbjct: 60466529 gctttggtttcaagatgagct-----tacactcacatctccatcagcatggttgttcaaa 60466583
Query: 383 agaatggttctcttgttgaaatccgaaattttttgggtgaaaaa-tatatccgcagggtt 441
||||||| |||| |||| ||| ||||||| ||||||||||| |||| || |||||||
Sbjct: 60466584 agaatgggtctcctgttataatgtgaaatttcctgggtgaaaaaatatagccacagggtt 60466643
Query: 442 cggatgaggccaggggttgcttgttcagtatctcaagc-ccagaaagatgagctgatttt 500
| ||||||||||| ||||||||||||||||||| || ||||||| | || | ||||
Sbjct: 60466644 cagatgaggccagacattgcttgttcagtatctcacgcaccagaaaagtaagttaatttc 60466703
Query: 501 agaaggaaatgacattgaacttgtatcaaattcagctgctttgattcagcaagccacaac 560
|||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 60466704 tgaaggaaatgacattgaacttgtaacaaatccagctgctttaatttagcaagcc-caac 60466762
Query: 561 tgttaagaacaaggatatcagaaaatttttggatggtatctatgtttctgaaaaaggaac 620
||||| |||| |||| |||| || ||||||||||||| ||||| |||||||| |||||
Sbjct: 60466763 agttaaaaacacagatagcagagaaattttggatggtatttatgtctctgaaaatggaac 60466822
Query: 621 agttcagca 629
|||||||||
Sbjct: 60466823 agttcagca 60466831
Score = 165 bits (83), Expect = 8e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 453 aggggttgcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatga 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32309852 aggggttgcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatga 32309793
Query: 513 cattgaacttgtatcaaattcag 535
|||||||||||||||||||||||
Sbjct: 32309792 cattgaacttgtatcaaattcag 32309770
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 61 agaatgaagaccattctcagcaatcagactgtcgacattccagaaaatg 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32313748 agaatgaagaccattctcagcaatcagactgtcgacattccagaaaatg 32313700
Score = 89.7 bits (45), Expect = 4e-15
Identities = 48/49 (97%)
Strand = Plus / Minus
Query: 14 aaaagcgtgatgacgaaagacgctcgctctttgccgcatctactgcgag 62
||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 32314244 aaaagcgtgatgacgaaagacgctctctctttgccgcatctactgcgag 32314196
>Sscrofa_Chr11
|| Length = 87690581
Score = 634 bits (320), Expect = e-179
Identities = 610/703 (86%), Gaps = 4/703 (0%)
Strand = Plus / Plus
Query: 39 gctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacat 98
||||||||||||| | |||||||||||||||| | ||||||||||| | |||| | ||||
Sbjct: 74654202 gctctttgccgcagccactgcgagaatgaagagccttctcagcaatgaaactgccaacat 74654261
Query: 99 tccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagagg 158
|||||| |||| | |||||| || ||| ||||||| ||| |||||||||||||||||||
Sbjct: 74654262 tccagagcatgtgggcatcactctgaaaagacgcacggtccttgtgaagggccccagagg 74654321
Query: 159 cactctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaa 218
||| |||||||||| ||| |||| || ||| |||||||||||||||||||||| ||||
Sbjct: 74654322 cacc--gaggagggacgtcagccacctcgatggagaactcagtctccttggaaaggaaaa 74654379
Query: 219 gaagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcac 278
|||||||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||
Sbjct: 74654380 gaagaggctccgggttgacacatggtggggaaggagaaaggaagcggctactgttcgcac 74654439
Query: 279 catctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgttacaagat 338
||||||| | || ||| || ||| ||||| |||| ||||||| ||||| | | |||||
Sbjct: 74654440 catctgtggccacgtagaggataggatcagaggtggtacactgagcttcggctccaagaa 74654499
Query: 339 gaggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctcttgt 398
| |||||| | | ||||| ||||||||| |||| ||||||||||||||||||||| |||
Sbjct: 74654500 ggggtctggggacactcacgtccccatcagcgtccttattcaggagaatggttctcctgt 74654559
Query: 399 tgaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggggt 458
|||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||
Sbjct: 74654560 tgaaatccgacattttttgagtgaaaaatacatccgcagggttcggatgaggccgtgggt 74654619
Query: 459 tgcttgttcagtatctc-aagcccagaaagatgagctgattttagaaggaaatgacattg 517
||| |||||| |||||| ||||||||||| |||||||||| |||||||||| ||| |||
Sbjct: 74654620 tgcgtgttcaatatctctaagcccagaaacatgagctgatgctagaaggaaacgaccttg 74654679
Query: 518 aacttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaggata 577
|||||||||||||||||||||||| ||||||||| |||||||| |||||| | ||||||
Sbjct: 74654680 aacttgtatcaaattcagctgcttcgattcagcacgccacaacaattaagagcgaggata 74654739
Query: 578 tcagaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgatg 637
| ||||| |||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 74654740 ttagaaacgttttggttaatatctatgtttctgaaaaaggaacggttcagcaggctgatg 74654799
Query: 638 agtaagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacatt 697
|| ||||| ||||| |||| || || ||||||| ||||||||| | |||||||||| | |
Sbjct: 74654800 aggaagatctgagtggtccagg-tagagaaacagcaagatgccgggtgattcttcagact 74654858
Query: 698 catttgtgatgttttacgatacaataaaaagtctattgactta 740
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 74654859 catttgtgatgttttaagatacaataaaaagtctattgactta 74654901
Score = 521 bits (263), Expect = e-145
Identities = 461/524 (87%), Gaps = 6/524 (1%)
Strand = Plus / Minus
Query: 60 gagaatgaagaccattctcagcaatcagactgtcgacattccagaaaatgtcgacatcac 119
|||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||||||
Sbjct: 56039017 gagaatgaagaccattgtcagcagtca--ctgtcgacattccagaaaatgttgacatcac 56038960
Query: 120 actaaaaggacgcacagtcattgtgaagggccccagaggcactctgaggagggacttcaa 179
|||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 56038959 tctaaaaggacacacagtcatcgcgaagggccccagaggcactctgaggagggacttcaa 56038900
Query: 180 ccacatcaatgtagaactcagtctccttggaaagaaaaagaagaggctccgggttgacaa 239
||||||||||||||||||||| ||||||| | ||||||| ||||||||||||||||||
Sbjct: 56038899 ccacatcaatgtagaactcaggctccttgaagagaaaaa--agaggctccgggttgacag 56038842
Query: 240 atggtggggaaatagaaaggaactggcaactgttcgcaccatctgtagtcatgtacagaa 299
| ||||||||||||||||| ||||||| | |||||||| | || || || ||||||||||
Sbjct: 56038841 acggtggggaaatagaaagaaactggctattgttcgcatcgtccgtggttatgtacagaa 56038782
Query: 300 tatgatcaagggtgttacactgggcttccgttacaagatgaggtctgtgtatgctcactt 359
|||| ||||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||
Sbjct: 56038781 tatggtcaagggtggtacaccgggcttccgttacaagatgcggtctgtgtacgctcactt 56038722
Query: 360 ccccatcaacgtcgttattcaggagaatggttctcttgttgaaatccgaaattttttggg 419
|||| |||| ||| |||||||||||| ||| | ||||||||||||| |||||||| ||
Sbjct: 56038721 ccccgtcaatgtcattattcaggagagtggctttcttgttgaaatctgaaattttggggc 56038662
Query: 420 tgaaaaatatatccgcagggttcggatgaggccaggggttgcttgttcagt--atctcaa 477
||| | ||| ||| ||||||| ||||| |||||||||||||||||||||| | ||||
Sbjct: 56038661 tgatacatacatctacagggtttggatgcggccaggggttgcttgttcagtcagtatcaa 56038602
Query: 478 gcccagaaagatgagctgattttagaaggaaatgacattgaacttgtatcaaattcagct 537
|||| |||||||||||||| |||||||||| | ||||| ||| |||||||||||||||
Sbjct: 56038601 gcccttgaagatgagctgattctagaaggaaacggcattggactggtatcaaattcagct 56038542
Query: 538 gctttgattcagcaagccacaactgttaagaacaaggatatcag 581
|||| ||||||||||||||| | ||||||||||||| ||||||
Sbjct: 56038541 gcttggattcagcaagccacggcagttaagaacaagggtatcag 56038498
Score = 163 bits (82), Expect = 3e-37
Identities = 154/176 (87%), Gaps = 9/176 (5%)
Strand = Plus / Minus
Query: 565 aagaacaaggatatcagaaaatttttggatggtatctatgtttctgaaaaaggaacagtt 624
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 56038229 aagaacaaggatatcagaaaatttttggatggtatctatgtttctgaaaa------agtt 56038176
Query: 625 cagcaggctgatgagtaagatttgagttgtcccggctacagaaacaacaagatgccagat 684
|||||| ||||||| |||||| |||||||| | ||| ||| ||||| |||||||||||
Sbjct: 56038175 cagcagactgatgactaagatctgagttgt-tcagct--agagacaacgagatgccagat 56038119
Query: 685 gattcttcacattcatttgtgatgttttacgatacaataaaaagtctattgactta 740
||||| ||| | ||||||||||||||||| |||| |||| ||||||||||||||||
Sbjct: 56038118 gattcctcagactcatttgtgatgttttatgatagaatagaaagtctattgactta 56038063
>gb|GL893383.2| Sus scrofa unplaced genomic scaffold ChrUScaf1268
Length = 147189
Score = 626 bits (316), Expect = e-177
Identities = 609/703 (86%), Gaps = 4/703 (0%)
Strand = Plus / Plus
Query: 39 gctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacat 98
||||||||||||| | |||||||||||||||| | ||||||||||| | |||| | ||||
Sbjct: 120148 gctctttgccgcagccactgcgagaatgaagagccttctcagcaatgaaactgccaacat 120207
Query: 99 tccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagagg 158
|||||| |||| | |||| | || ||| ||||||| ||| |||||||||||||||||||
Sbjct: 120208 tccagagcatgtgggcatccctctgaaaagacgcacggtccttgtgaagggccccagagg 120267
Query: 159 cactctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaa 218
||| |||||||||| ||| |||| || ||| |||||||||||||||||||||| ||||
Sbjct: 120268 cacc--gaggagggacgtcagccacctcgatggagaactcagtctccttggaaaggaaaa 120325
Query: 219 gaagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcac 278
|||||||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||
Sbjct: 120326 gaagaggctccgggttgacacatggtggggaaggagaaaggaagcggctactgttcgcac 120385
Query: 279 catctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgttacaagat 338
|||||| | || ||| || ||| ||||| |||| ||||||| ||||| | | |||||
Sbjct: 120386 catctgcggccacgtagaggataggatcagaggtggtacactgagcttcggctccaagaa 120445
Query: 339 gaggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctcttgt 398
| |||||| | | ||||| ||||||||| |||| ||||||||||||||||||||| |||
Sbjct: 120446 ggggtctggggacactcacgtccccatcagcgtccttattcaggagaatggttctcctgt 120505
Query: 399 tgaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggggt 458
|||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||
Sbjct: 120506 tgaaatccgacattttttgagtgaaaaatacatccgcagggttcggatgaggccgtgggt 120565
Query: 459 tgcttgttcagtatctc-aagcccagaaagatgagctgattttagaaggaaatgacattg 517
||| |||||| |||||| ||||||||||| |||||||||| ||||||||| ||| |||
Sbjct: 120566 tgcgtgttcaatatctctaagcccagaaacatgagctgatgccagaaggaaacgaccttg 120625
Query: 518 aacttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaggata 577
|||||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||
Sbjct: 120626 aacttgtatcaaattcagctgcttcgattcagcacgccacaacagttaagaaggaggata 120685
Query: 578 tcagaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgatg 637
| ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 120686 ttagaaacgttttggataatatctatgtttctgaaaaaggaacggttcagcaggctgatg 120745
Query: 638 agtaagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacatt 697
|| ||||| ||||| |||| || || ||||||| ||||||||| | |||||||||| | |
Sbjct: 120746 aggaagatctgagtggtccagg-tagagaaacagcaagatgccgggtgattcttcagact 120804
Query: 698 catttgtgatgttttacgatacaataaaaagtctattgactta 740
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 120805 catttgtgatgttttaagatacaataaaaagtctattgactta 120847
>Sscrofa_Chr12
|| Length = 63588571
Score = 450 bits (227), Expect = e-124
Identities = 492/577 (85%), Gaps = 29/577 (5%)
Strand = Plus / Minus
Query: 145 aagggccccagaggcactctgaggagggacttcaaccacatcaatgtagaactcagtctc 204
||||| |||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 12936274 aaggggcccagaggcactctgaggagggacttcagccacatca------------gtctc 12936227
Query: 205 cttggaaagaaaaagaagaggctccgggttgacaaatggtggggaaatagaaaggaactg 264
| ||||||||||||||||||||||||||||||| | || || |||||||||||| |||
Sbjct: 12936226 nt-ggaaagaaaaagaagaggctccgggttgacagacggcaggaaaatagaaaggagctg 12936168
Query: 265 gcaactgttcgcaccatctgtagtcatgtacagaatatgatcaagggtgttacactgggc 324
|| ||||| |||| ||||||||| ||||||||| |||||||||||||||| |||||
Sbjct: 12936167 gcgactgtgtgcactgtctgtagtcttgtacagaacgtgatcaagggtgttac--tgggc 12936110
Query: 325 ttccgttacaagatgaggtctgtgtatgctcacttccccatcaacgtcgttattcaggag 384
||| |||| | ||||| || || | |||||||||||||| |||||||||||||||
Sbjct: 12936109 ttctgttagaggatgaagtgtg------cccacttccccatcaatgtcgttattcaggag 12936056
Query: 385 aatggttctcttgttgaaatccgaaattttttgggtgaaaaatatatccgcagggttcgg 444
||| |||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||| |
Sbjct: 12936055 aattgttctcttgttgaaatccaaaactttttgggtgaaaaatacatctgcagggttcag 12935996
Query: 445 atgaggccaggggttgcttgttcagtatctcaagcccagaaagatgagctgattttagaa 504
|||||| |||| ||||||||||||||||||||||||||| || ||| || | |||
Sbjct: 12935995 atgagggcaggcattgcttgttcagtatctcaagcccagatagttga-----ttcttgaa 12935941
Query: 505 ggaaatgacattgaacttgtatcaaattcagctgctttgattcagcaagccacaactgtt 564
||||| |||| |||||||||||||||||||||||||||| || |||||| |||||| |||
Sbjct: 12935940 ggaaacgacactgaacttgtatcaaattcagctgctttggtttagcaagtcacaacagtt 12935881
Query: 565 aagaacaaggatatcagaaaatttttggatggtatctatgtttctg-aaaaaggaacagt 623
|||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct: 12935880 aagaacaa-gatatcagaaaatttggggatggtatctatgtttctgaaaaaaggaatagt 12935822
Query: 624 tcagcaggctgatgagtaagatttgagttgtcccggctacagaaacaacaagatgccaga 683
||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 12935821 tcagcaggctgatgagtaagacctgagttgt-ttggctacagaaacagcaagatgccagg 12935763
Query: 684 tgattcttcacattcatttgtgatgttttacgataca 720
|||||| ||| | ||||||||||||||||| ||||||
Sbjct: 12935762 tgattcctcagactcatttgtgatgttttaagataca 12935726
>Sscrofa_Chr14
|| Length = 153851969
Score = 448 bits (226), Expect = e-123
Identities = 438/508 (86%), Gaps = 13/508 (2%)
Strand = Plus / Plus
Query: 153 cagaggcactctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaa 212
||||||||| |||||||| ||||||||||||||||||| || ||||||||| || ||||
Sbjct: 41619957 cagaggcaccctgaggagagacttcaaccacatcaatggaggactcagtcttctctgaaa 41620016
Query: 213 gaaaaagaagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgt 272
|||||||| |||||| |||||||||||||||||||||||||||| ||||||| ||
Sbjct: 41620017 gaaaaaga---ggctccaggttgacaaatggtggggaaatagaaag----tggcaacagt 41620069
Query: 273 tcgcaccatctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgtta 332
|| || |||| |||||||||||| || ||||||| | |||||||||| |||||||||||
Sbjct: 41620070 tcctactatctatagtcatgtacacaacatgatcacgtgtgttacactaggcttccgtta 41620129
Query: 333 caagatgaggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttc 392
||||| ||||||||||||||| || |||||||||| || ||||||| ||| |||||
Sbjct: 41620130 caagacaaggtctgtgtatgcttacctccccatcaatatcattattcaatagagcggttc 41620189
Query: 393 tcttgttgaaatccgaaattttttggg------tgaaaaatatatccgcagggttcggat 446
|||||| ||||||| |||||| ||| ||||||||| |||| ||| ||| ||||
Sbjct: 41620190 tcttgtggaaatccaaaatttggggggagggggtgaaaaatacatccacagcgtttggat 41620249
Query: 447 gaggccaggggttgcttgttcagtatctcaagcccagaaagatgagctgattttagaagg 506
||||||||| ||||||||||| |||||||| |||||||||||||| ||||| | |||||
Sbjct: 41620250 gaggccaggcattgcttgttcaatatctcaaacccagaaagatgagttgattcttgaagg 41620309
Query: 507 aaatgacattgaacttgtatcaaattcagctgctttgattcagcaagccacaactgttaa 566
|||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||
Sbjct: 41620310 aaatgacattgaacttgtattaaattcagcttctttgattcagcaagccacaacagttaa 41620369
Query: 567 gaacaaggatatcagaaaatttttggatggtatctatgtttctgaaaaaggaacagttca 626
|||||| |||||||||||| | ||||| ||| ||||||||||||||||||||||||||
Sbjct: 41620370 aaacaagtatatcagaaaatctggggatgatatatatgtttctgaaaaaggaacagttca 41620429
Query: 627 gcaggctgatgagtaagatttgagttgt 654
|||||||||||| |||||| ||||||||
Sbjct: 41620430 gcaggctgatgaataagatctgagttgt 41620457
>Sscrofa_Chr13
|| Length = 218635234
Score = 414 bits (209), Expect = e-113
Identities = 321/355 (90%), Gaps = 5/355 (1%)
Strand = Plus / Plus
Query: 383 agaatggttctcttgttgaaatccgaaattttttgggtgaaaaatatatccgcagggttc 442
||||||||||||||| |||||||| ||||||| |||||||||||| |||| |||| |||
Sbjct: 35951511 agaatggttctcttgctgaaatccaaaattttgggggtgaaaaatacatccacaggtttc 35951570
Query: 443 ggatgaggccaggggttgcttgttcagtatctcaagcccagaaagatgagctgattttag 502
||||| |||||| || | |||||||||||||||||||||||||||||| ||||| | |
Sbjct: 35951571 tgatgaagccaggcattacgtgttcagtatctcaagcccagaaagatgagttgattcttg 35951630
Query: 503 aaggaaatgacattgaacttgtatcaaattcagctgctttgattcagcaagccacaactg 562
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 35951631 aaggaaatgacaatgaact-gtatcaaattcagctgctttgattcagcaagccacaacag 35951689
Query: 563 ttaagaacaaggatatcagaaaatttttggatggtatctatgtttctgaaaaaggaacag 622
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 35951690 ttaagaacaaggatatcagaaaatttttggatggtatctaagtttctgaaaaaggaacag 35951749
Query: 623 ttcagcaggctgatgagtaagatttgagttgtcccggctacagaaacaacaagatgccag 682
||||||||||||||||||||||| |||||||| | ||||| ||| ||||| |||||||
Sbjct: 35951750 ttcagcaggctgatgagtaagatctgagttgt-ctggctataga---aacaatatgccag 35951805
Query: 683 atgattcttcacattcatttgtgatgttttacgatacaataaaaagtctattgac 737
||||||||||| | |||| |||||||||||| |||| ||||||||| ||||||||
Sbjct: 35951806 atgattcttcagactcatctgtgatgttttaagatataataaaaagcctattgac 35951860
Score = 285 bits (144), Expect = 3e-74
Identities = 258/296 (87%), Gaps = 15/296 (5%)
Strand = Plus / Plus
Query: 77 tcagcaatcagactgtcgacattccagaaaatgtcgacatcacactaaaaggacgcacag 136
|||||||||||||||||||||||||| ||||||| ||||||| | |||||||| |||||
Sbjct: 35950946 tcagcaatcagactgtcgacattcca-aaaatgttgacatcattccaaaaggacacacag 35951004
Query: 137 tcattgtgaagggccccagaggcactctgaggagggacttcaaccacatcaatgtagaac 196
| ||| |||||||||||||||||||| || |||||||||| |||||
Sbjct: 35951005 ttattatgaagggccccagaggcact-------------tcgtccacatcaatctagaat 35951051
Query: 197 tcagtctccttggaaagaaaaagaagaggctccgggttgacaaatggtggggaaatagaa 256
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 35951052 tcagtctccttggaaagaaaaagaagaggctccacgttgaaaaatggtggggaaatagaa 35951111
Query: 257 aggaactggcaactgttcgcaccatctgtagtcatgtacagaatatgatcaagggtgtta 316
|||||||||| |||||| |||| ||||||||||||||||| || || |||||||| ||||
Sbjct: 35951112 aggaactggctactgtttgcactatctgtagtcatgtacacaacatcatcaaggg-gtta 35951170
Query: 317 cactgggcttccgttacaagatgaggtctgtgtatgctcacttccccatcaacgtc 372
|||||||||||||||||||||| || |||||||||| |||||||||||||||||||
Sbjct: 35951171 cactgggcttccgttacaagataagctctgtgtatgttcacttccccatcaacgtc 35951226
>gb|GL892798.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1627
Length = 119983
Score = 230 bits (116), Expect = 2e-57
Identities = 208/236 (88%), Gaps = 7/236 (2%)
Strand = Plus / Plus
Query: 503 aaggaaatgacattgaacttgtatcaaattcagctgctttgattcagcaagccacaactg 562
||||||| ||||||||||||||||||||| || |||| |||||||||||| |||||| |
Sbjct: 98181 aaggaaacaacattgaacttgtatcaaatttagatgctgtgattcagcaagtcacaacag 98240
Query: 563 ttaagaacaaggatatcagaaaatttttggatggtatctatgtttc---tgaaaaaggaa 619
||||||| |||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct: 98241 ttaagaagaaggatatcagaaaatttttggatggtatctatgtttccaaaaaaaaatgga 98300
Query: 620 cagttcagcaggctgatgagtaagatttgagttgtcccggctacagaaacaacaagatgc 679
||||||| ||||| ||||||||||| |||||||| ||||||| ||| ||||||||||
Sbjct: 98301 cagttcatcaggccaatgagtaagatctgagttgt-ccggctataga---aacaagatgc 98356
Query: 680 cagatgattcttcacattcatttgtgatgttttacgatacaataaaaagtctattg 735
|||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct: 98357 cagaagattcttcagactcatttgtgatgttttaagatacaataaaaagtctattg 98412
Score = 216 bits (109), Expect = 2e-53
Identities = 221/256 (86%), Gaps = 8/256 (3%)
Strand = Plus / Plus
Query: 246 gggaaatagaaaggaactggcaactgttcgcaccatctgtagtcatgtacagaatatgat 305
||||||||||||||||||||| ||||||| ||||||||||||||| |||| | |
Sbjct: 97829 gggaaatagaaaggaactggctactgttct----atctgtagtcatgtatagaacacagt 97884
Query: 306 caagggtgttacactgggcttccgttacaagatgaggtctgtgtatgctcacttccccat 365
||||||||||||||||||||||| || ||||||||||||| |||| |||| ||||||||
Sbjct: 97885 caagggtgttacactgggcttccatttcaagatgaggtctatgtacactcatttccccat 97944
Query: 366 caacgtcgttattcaggagaatggttctcttgttgaaatccgaaattttttgggtgaaaa 425
||| | |||||||||||||||||||||||||||||||||| ||| |||| ||| |||||
Sbjct: 97945 caatggtgttattcaggagaatggttctcttgttgaaatcc-aaaattttggggggaaaa 98003
Query: 426 atatatccgcagggttcggatgaggccagg---ggttgcttgttcagtatctcaagccca 482
||| |||| ||||||| |||| ||||| || |||||||||||||||| |||||||||
Sbjct: 98004 atacatccacagggtttggataaggcctggcattgttgcttgttcagtatttcaagccca 98063
Query: 483 gaaagatgagctgatt 498
|||||||||| |||||
Sbjct: 98064 gaaagatgagttgatt 98079
Score = 151 bits (76), Expect = 1e-33
Identities = 130/148 (87%)
Strand = Plus / Plus
Query: 40 ctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacatt 99
||||||||| || ||||| |||||||||| ||||||||| ||||||||||||| |||||
Sbjct: 97536 ctctttgccacacttactgagagaatgaaggccattctcaccaatcagactgtcaacatt 97595
Query: 100 ccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagaggc 159
||||||||||| |||||||| | |||||||| |||||| ||| |||||| ||| ||||||
Sbjct: 97596 ccagaaaatgttgacatcactcgaaaaggacacacagttattatgaaggacccaagaggc 97655
Query: 160 actctgaggagggacttcaaccacatca 187
|||||||| |||| ||| ||||||||||
Sbjct: 97656 actctgagaaggggctttaaccacatca 97683
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,870,374
Number of extensions: 354
Number of successful extensions: 354
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 71
Length of query: 1324
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1303
Effective length of database: 2,808,413,156
Effective search space: 3659362342268
Effective search space used: 3659362342268
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)