Animal-Genome cDNA 20110601C-002280


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002280
         (1324 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001019640.2| 60S ribosomal protein L9 [Bos taurus].            351   7e-97
Alignment   gi|XP_002689975.1| PREDICTED: ribosomal protein L9-like [Bos ta...   350   2e-96
Alignment   gi|XP_002705104.1| PREDICTED: ribosomal protein L9-like [Bos ta...   350   2e-96
Alignment   gi|XP_002691707.1| PREDICTED: ribosomal protein L9-like [Bos ta...   348   5e-96
Alignment   gi|XP_001256310.1| PREDICTED: ribosomal protein L9-like isoform...   348   5e-96
Alignment   gi|XP_002692470.1| PREDICTED: ribosomal protein L9-like [Bos ta...   346   2e-95
Alignment   gi|XP_001250707.1| PREDICTED: ribosomal protein L9-like isoform...   346   2e-95
Alignment   gi|XP_002700001.1| PREDICTED: ribosomal protein L9-like [Bos ta...   343   2e-94
Alignment   gi|XP_876470.2| PREDICTED: ribosomal protein L9-like [Bos tauru...   343   2e-94
Alignment   gi|XP_002692007.1| PREDICTED: ribosomal protein L9-like [Bos ta...   339   3e-93

>ref|NP_001019640.2| 60S ribosomal protein L9 [Bos taurus].
          Length = 192

 Score =  351 bits (901), Expect = 7e-97
 Identities = 179/192 (93%), Positives = 179/192 (93%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDI LKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_002689975.1| PREDICTED: ribosomal protein L9-like [Bos taurus].
          Length = 192

 Score =  350 bits (897), Expect = 2e-96
 Identities = 178/192 (92%), Positives = 179/192 (93%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDI LKGRTVIVKGPRGTL+RDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLQRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_002705104.1| PREDICTED: ribosomal protein L9-like [Bos taurus].
          Length = 192

 Score =  350 bits (897), Expect = 2e-96
 Identities = 178/192 (92%), Positives = 179/192 (93%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDI LKGRTVIVKGPRGTL+RDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLQRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_002691707.1| PREDICTED: ribosomal protein L9-like [Bos taurus].
          Length = 192

 Score =  348 bits (894), Expect = 5e-96
 Identities = 178/192 (92%), Positives = 178/192 (92%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDI LKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATV TICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61  WGNRKELATVLTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_001256310.1| PREDICTED: ribosomal protein L9-like isoform 1 [Bos taurus].
          Length = 192

 Score =  348 bits (894), Expect = 5e-96
 Identities = 178/192 (92%), Positives = 178/192 (92%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDI LKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATV TICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61  WGNRKELATVLTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_002692470.1| PREDICTED: ribosomal protein L9-like [Bos taurus].
          Length = 192

 Score =  346 bits (888), Expect = 2e-95
 Identities = 176/192 (91%), Positives = 178/192 (92%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDI LKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEI+NF GE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIQNFWGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMRPGVACSVSQAQ+DELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQRDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_001250707.1| PREDICTED: ribosomal protein L9-like isoform 1 [Bos taurus].
          Length = 192

 Score =  346 bits (888), Expect = 2e-95
 Identities = 176/192 (91%), Positives = 178/192 (92%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDI LKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEI+NF GE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIQNFWGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMRPGVACSVSQAQ+DELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQRDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_002700001.1| PREDICTED: ribosomal protein L9-like [Bos taurus].
          Length = 192

 Score =  343 bits (880), Expect = 2e-94
 Identities = 175/192 (91%), Positives = 176/192 (91%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDI +KGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDINVKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF GE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFWGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYI RVRMRPGVACSVSQAQKDELILEGNDIELVSNSA LIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYICRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAVLIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_876470.2| PREDICTED: ribosomal protein L9-like [Bos taurus].
          Length = 192

 Score =  343 bits (880), Expect = 2e-94
 Identities = 175/192 (91%), Positives = 176/192 (91%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDI +KGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDINVKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNF GE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFWGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYI RVRMRPGVACSVSQAQKDELILEGNDIELVSNSA LIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYICRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAVLIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_002692007.1| PREDICTED: ribosomal protein L9-like [Bos taurus].
          Length = 192

 Score =  339 bits (870), Expect = 3e-93
 Identities = 174/192 (90%), Positives = 175/192 (91%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTV+IPENVDI LKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVNIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGF YKMRSVYAHFPINVVIQENGSLVEIRNF GE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFPYKMRSVYAHFPINVVIQENGSLVEIRNFGGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYI RVRMRPGVAC VSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIHRVRMRPGVACLVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,897,360
Number of extensions: 1283238
Number of successful extensions: 3349
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3326
Number of HSP's successfully gapped: 13
Length of query: 441
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 336
Effective length of database: 14,207,134
Effective search space: 4773597024
Effective search space used: 4773597024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002280
         (1324 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_863548.1| PREDICTED: similar to ribosomal protein L9 isof...   353   2e-97
Alignment   gi|XP_536256.1| PREDICTED: similar to ribosomal protein L9 isof...   353   2e-97
Alignment   gi|XP_536406.2| PREDICTED: similar to ribosomal protein L9 [Can...   314   1e-85
Alignment   gi|XP_851364.1| PREDICTED: similar to 60S ribosomal protein L9 ...   145   7e-35
Alignment   gi|XP_537272.2| PREDICTED: similar to coiled-coil domain contai...    77   4e-14
Alignment   gi|XP_852052.1| PREDICTED: similar to MRDS1 [Canis familiaris].       55   2e-07

>ref|XP_863548.1| PREDICTED: similar to ribosomal protein L9 isoform 2 [Canis
           familiaris].
          Length = 192

 Score =  353 bits (906), Expect = 2e-97
 Identities = 180/192 (93%), Positives = 180/192 (93%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_536256.1| PREDICTED: similar to ribosomal protein L9 isoform 1 [Canis
           familiaris].
          Length = 192

 Score =  353 bits (906), Expect = 2e-97
 Identities = 180/192 (93%), Positives = 180/192 (93%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_536406.2| PREDICTED: similar to ribosomal protein L9 [Canis familiaris].
          Length = 191

 Score =  314 bits (805), Expect = 1e-85
 Identities = 163/192 (84%), Positives = 169/192 (88%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSN+TVDIPENVDITLKG TVIVKGPRGTLRR+FNHIN+E             DKW
Sbjct: 1   MKTILSNKTVDIPENVDITLKGCTVIVKGPRGTLRRNFNHINIELSLPGKKKRLQ-ADKW 59

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELAT+ TICSHVQNMIKG+TLGF YKMRSVYAHFPINVVIQEN SLVEIRNFLGE
Sbjct: 60  WGNRKELATICTICSHVQNMIKGMTLGFCYKMRSVYAHFPINVVIQENVSLVEIRNFLGE 119

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYI RVRMRPGVACSVSQAQKDELILEGNDIELV NSAA IQQATTVKN+DIRK L GIY
Sbjct: 120 KYIHRVRMRPGVACSVSQAQKDELILEGNDIELVLNSAASIQQATTVKNQDIRKILGGIY 179

Query: 604 VSEKGTVQQADE 639
           VSE GTVQQADE
Sbjct: 180 VSENGTVQQADE 191


>ref|XP_851364.1| PREDICTED: similar to 60S ribosomal protein L9 [Canis familiaris].
          Length = 103

 Score =  145 bits (367), Expect = 7e-35
 Identities = 78/114 (68%), Positives = 83/114 (72%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDITLKG TVI+KGPRGTLRRDFNH NVE            VDK 
Sbjct: 1   MKTILSNQTVDIPENVDITLKGHTVILKGPRGTLRRDFNHNNVEFSLLGKKKKRLRVDKC 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEI 405
             +           S VQNMIKG+TLGFRYKM+SVYAHFPIN +IQE GSLVEI
Sbjct: 61  ANS-----------SQVQNMIKGITLGFRYKMKSVYAHFPINAIIQEKGSLVEI 103


>ref|XP_537272.2| PREDICTED: similar to coiled-coil domain containing 5 (spindle
           associated) [Canis familiaris].
          Length = 375

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 36/55 (65%), Positives = 42/55 (76%)
 Frame = -2

Query: 204 ETEFYIDVVEVPPQSASGALHNDCASF*CDVDIFWNVDSLIAENGLHSRSRCGKE 40
           ET  YID VE PPQ +SGALHN+ AS   D+D+FWNV SLIAEN LH RS+C K+
Sbjct: 263 ETGIYIDAVESPPQGSSGALHNNSASLQSDMDVFWNVSSLIAENCLHPRSKCVKK 317


>ref|XP_852052.1| PREDICTED: similar to MRDS1 [Canis familiaris].
          Length = 155

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = -2

Query: 177 EVPPQSASGALHNDCASF*CDVDIFWNVDSLIAENGLHSRSRCGK 43
           E+ P+     +  +  S   DVD FWNVDSLIAENGLHS S CGK
Sbjct: 101 EINPRQCGMEVSREAVSLQSDVDTFWNVDSLIAENGLHSHSGCGK 145


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,726,004
Number of extensions: 1258054
Number of successful extensions: 3552
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3512
Number of HSP's successfully gapped: 6
Length of query: 441
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 335
Effective length of database: 15,340,888
Effective search space: 5139197480
Effective search space used: 5139197480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002280
         (1324 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000652.2| 60S ribosomal protein L9 [Homo sapiens].             353   2e-97
Alignment   gi|NP_001020092.1| 60S ribosomal protein L9 [Homo sapiens].          353   2e-97

>ref|NP_000652.2| 60S ribosomal protein L9 [Homo sapiens].
          Length = 192

 Score =  353 bits (906), Expect = 2e-97
 Identities = 180/192 (93%), Positives = 180/192 (93%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|NP_001020092.1| 60S ribosomal protein L9 [Homo sapiens].
          Length = 192

 Score =  353 bits (906), Expect = 2e-97
 Identities = 180/192 (93%), Positives = 180/192 (93%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,657,095
Number of extensions: 1229377
Number of successful extensions: 3514
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3503
Number of HSP's successfully gapped: 2
Length of query: 441
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 335
Effective length of database: 14,802,980
Effective search space: 4958998300
Effective search space used: 4958998300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002280
         (1324 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035422.1| 60S ribosomal protein L9 [Mus musculus].             348   4e-96
Alignment   gi|XP_484272.1| PREDICTED: 60S ribosomal protein L9-like [Mus m...   338   4e-93
Alignment   gi|XP_003086220.1| PREDICTED: 60S ribosomal protein L9-like [Mu...   331   7e-91

>ref|NP_035422.1| 60S ribosomal protein L9 [Mus musculus].
          Length = 192

 Score =  348 bits (894), Expect = 4e-96
 Identities = 178/192 (92%), Positives = 179/192 (93%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENV+ITLKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMR GVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_484272.1| PREDICTED: 60S ribosomal protein L9-like [Mus musculus].
          Length = 192

 Score =  338 bits (868), Expect = 4e-93
 Identities = 174/192 (90%), Positives = 176/192 (91%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENV+ITLKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINV+IQENGSLVEIRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVLIQENGSLVEIRNFLGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYI RVRMR GVACSVSQAQKDELI EGNDIELVSNSAALIQQATTVKNK IRKFLDGIY
Sbjct: 121 KYICRVRMRTGVACSVSQAQKDELIREGNDIELVSNSAALIQQATTVKNKYIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_003086220.1| PREDICTED: 60S ribosomal protein L9-like [Mus musculus].
          Length = 191

 Score =  331 bits (849), Expect = 7e-91
 Identities = 172/192 (89%), Positives = 175/192 (91%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENV+ITLKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSSWEEKVKLR-VDKW 59

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELA++RTICSHVQNMIKGVTLGFRYKMRSV AHFPINVVIQENG LVEIRNFLGE
Sbjct: 60  WGNRKELASIRTICSHVQNMIKGVTLGFRYKMRSVDAHFPINVVIQENGFLVEIRNFLGE 119

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMR GVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNK IRKFLDGIY
Sbjct: 120 KYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKVIRKFLDGIY 179

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQ DE
Sbjct: 180 VSEKGTVQQTDE 191


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,586,978
Number of extensions: 1034950
Number of successful extensions: 2859
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2846
Number of HSP's successfully gapped: 3
Length of query: 441
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 337
Effective length of database: 12,493,815
Effective search space: 4210415655
Effective search space used: 4210415655
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002280
         (1324 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001230410.1| ribosomal protein L9 [Sus scrofa].                353   1e-97
Alignment   gi|XP_003360420.1| PREDICTED: 60S ribosomal protein L9-like [Su...   351   6e-97
Alignment   gi|XP_003135239.1| PREDICTED: 60S ribosomal protein L9-like [Su...   351   6e-97

>ref|NP_001230410.1| ribosomal protein L9 [Sus scrofa].
          Length = 192

 Score =  353 bits (906), Expect = 1e-97
 Identities = 180/192 (93%), Positives = 180/192 (93%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_003360420.1| PREDICTED: 60S ribosomal protein L9-like [Sus scrofa].
          Length = 192

 Score =  351 bits (900), Expect = 6e-97
 Identities = 178/192 (92%), Positives = 179/192 (93%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGF YKMRSVYAHFPIN+VIQENGSLVEIRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFHYKMRSVYAHFPINIVIQENGSLVEIRNFLGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


>ref|XP_003135239.1| PREDICTED: 60S ribosomal protein L9-like [Sus scrofa].
          Length = 192

 Score =  351 bits (900), Expect = 6e-97
 Identities = 178/192 (92%), Positives = 179/192 (93%)
 Frame = +1

Query: 64  MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVEXXXXXXXXXXXXVDKW 243
           MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVE            VDKW
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 244 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 423
           WGNRKELATVRTICSHVQNMIKGVTLGF YKMRSVYAHFPIN+VIQENGSLVEIRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFHYKMRSVYAHFPINIVIQENGSLVEIRNFLGE 120

Query: 424 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 603
           KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 604 VSEKGTVQQADE 639
           VSEKGTVQQADE
Sbjct: 181 VSEKGTVQQADE 192


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,248,379
Number of extensions: 940488
Number of successful extensions: 2120
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2113
Number of HSP's successfully gapped: 3
Length of query: 441
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 339
Effective length of database: 8,804,438
Effective search space: 2984704482
Effective search space used: 2984704482
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002280
         (1324 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_ChrX                                                         1360   0.0  
Sscrofa_Chr09                                                         795   0.0  
Sscrofa_Chr05                                                         720   0.0  
Sscrofa_Chr08                                                         710   0.0  
Sscrofa_Chr11                                                         634   e-179
gb|GL893383.2| Sus scrofa unplaced genomic scaffold ChrUScaf1268      626   e-177
Sscrofa_Chr12                                                         450   e-124
Sscrofa_Chr14                                                         448   e-123
Sscrofa_Chr13                                                         414   e-113
gb|GL892798.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   230   2e-57

>Sscrofa_ChrX 
||          Length = 144288218

 Score = 1360 bits (686), Expect = 0.0
 Identities = 698/702 (99%)
 Strand = Plus / Minus

                                                                            
Query: 39       gctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacat 98
                |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 69087494 gctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgttgacat 69087435

                                                                            
Query: 99       tccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagagg 158
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69087434 tccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagagg 69087375

                                                                            
Query: 159      cactctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaa 218
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69087374 cactctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaa 69087315

                                                                            
Query: 219      gaagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcac 278
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69087314 gaagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcac 69087255

                                                                            
Query: 279      catctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgttacaagat 338
                |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 69087254 catctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccattacaagat 69087195

                                                                            
Query: 339      gaggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctcttgt 398
                ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 69087194 gaggtctgtgtatgctcacttccccatcaacatcgttattcaggagaatggttctcttgt 69087135

                                                                            
Query: 399      tgaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggggt 458
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69087134 tgaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggggt 69087075

                                                                            
Query: 459      tgcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatgacattga 518
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69087074 tgcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatgacattga 69087015

                                                                            
Query: 519      acttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaggatat 578
                |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 69087014 acttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaagatat 69086955

                                                                            
Query: 579      cagaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgatga 638
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69086954 cagaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgatga 69086895

                                                                            
Query: 639      gtaagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacattc 698
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69086894 gtaagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacattc 69086835

                                                          
Query: 699      atttgtgatgttttacgatacaataaaaagtctattgactta 740
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69086834 atttgtgatgttttacgatacaataaaaagtctattgactta 69086793



 Score =  918 bits (463), Expect = 0.0
 Identities = 643/701 (91%), Gaps = 4/701 (0%)
 Strand = Plus / Plus

                                                                            
Query: 40       ctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacatt 99
                ||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct: 64220650 ctctttgccacatctactgcgagaatgaagaccattctcaaccatcagactgtcgacctt 64220709

                                                                            
Query: 100      ccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagaggc 159
                |||||||||||| ||||||| || ||||||  ||||||||||||||||||||||| ||||
Sbjct: 64220710 ccagaaaatgtcaacatcactctgaaaggatccacagtcattgtgaagggccccataggc 64220769

                                                                            
Query: 160      actctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaag 219
                ||||||| ||| |||||||||||||| |||| ||||||||| |||||||| || ||||||
Sbjct: 64220770 actctgaagagagacttcaaccacattaatgcagaactcagactccttgggaaaaaaaag 64220829

                                                                            
Query: 220      aagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcacc 279
                |||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 64220830 aagaggctccaggttgacaaatggtgggaaaatagaaaggaactggctactgttcgcacc 64220889

                                                                            
Query: 280      atctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgttacaagatg 339
                |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 64220890 atctgtagtcatatacagaatatgatcaagggtgttacactgagcttccattacaagatg 64220949

                                                                            
Query: 340      aggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctcttgtt 399
                |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 64220950 aggtctgtgtatgctcacttccccatcaacgttgttattcaggagaatgattctcttgtt 64221009

                                                                            
Query: 400      gaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggggtt 459
                ||||||| |||||||  || ||||||||| |||| ||||||  |||||||||||||||||
Sbjct: 64221010 gaaatccaaaattttggggatgaaaaatacatccacagggtctggatgaggccaggggtt 64221069

                                                                            
Query: 460      gcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatgacattgaa 519
                |||| ||||||| ||| || |||||||||||||||||||||||| |||||  ||||||||
Sbjct: 64221070 gcttattcagtaactc-aggccagaaagatgagctgattttagacggaaacaacattgaa 64221128

                                                                            
Query: 520      cttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaggatatc 579
                ||||||||||||||||||||||||||||||||||||||||  |||||||| ||| |||| 
Sbjct: 64221129 cttgtatcaaattcagctgctttgattcagcaagccacaatagttaagaaaaagaatatt 64221188

                                                                            
Query: 580      agaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgatgag 639
                 ||||||||||||||||||||||||||||  ||||||||||||||||| ||| ||| |||
Sbjct: 64221189 ggaaaatttttggatggtatctatgtttccaaaaaaggaacagttcagaaggttgacgag 64221248

                                                                            
Query: 640      taagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacattca 699
                |||||| ||||||||||| ||||||||   |||||||||||||||||||||||| |||||
Sbjct: 64221249 taagatctgagttgtcccagctacaga---aacaagatgccagatgattcttcagattca 64221305

                                                         
Query: 700      tttgtgatgttttacgatacaataaaaagtctattgactta 740
                ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 64221306 tttgtgatgttttactatacaataaaaagtctattgactta 64221346



 Score =  918 bits (463), Expect = 0.0
 Identities = 643/701 (91%), Gaps = 4/701 (0%)
 Strand = Plus / Minus

                                                                            
Query: 40       ctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacatt 99
                ||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct: 64355850 ctctttgccacatctactgcgagaatgaagaccattctcaaccatcagactgtcgacctt 64355791

                                                                            
Query: 100      ccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagaggc 159
                |||||||||||| ||||||| || ||||||  ||||||||||||||||||||||| ||||
Sbjct: 64355790 ccagaaaatgtcaacatcactctgaaaggatccacagtcattgtgaagggccccataggc 64355731

                                                                            
Query: 160      actctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaag 219
                ||||||| ||| |||||||||||||| |||| ||||||||| |||||||| || ||||||
Sbjct: 64355730 actctgaagagagacttcaaccacattaatgcagaactcagactccttgggaaaaaaaag 64355671

                                                                            
Query: 220      aagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcacc 279
                |||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 64355670 aagaggctccaggttgacaaatggtgggaaaatagaaaggaactggctactgttcgcacc 64355611

                                                                            
Query: 280      atctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgttacaagatg 339
                |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 64355610 atctgtagtcatatacagaatatgatcaagggtgttacactgagcttccattacaagatg 64355551

                                                                            
Query: 340      aggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctcttgtt 399
                |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 64355550 aggtctgtgtatgctcacttccccatcaacgttgttattcaggagaatgattctcttgtt 64355491

                                                                            
Query: 400      gaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggggtt 459
                ||||||| |||||||  || ||||||||| |||| ||||||  |||||||||||||||||
Sbjct: 64355490 gaaatccaaaattttggggatgaaaaatacatccacagggtctggatgaggccaggggtt 64355431

                                                                            
Query: 460      gcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatgacattgaa 519
                |||| ||||||| ||| || |||||||||||||||||||||||| |||||  ||||||||
Sbjct: 64355430 gcttattcagtaactc-aggccagaaagatgagctgattttagacggaaacaacattgaa 64355372

                                                                            
Query: 520      cttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaggatatc 579
                ||||||||||||||||||||||||||||||||||||||||  |||||||| ||| |||| 
Sbjct: 64355371 cttgtatcaaattcagctgctttgattcagcaagccacaatagttaagaaaaagaatatt 64355312

                                                                            
Query: 580      agaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgatgag 639
                 ||||||||||||||||||||||||||||  ||||||||||||||||| ||| ||| |||
Sbjct: 64355311 ggaaaatttttggatggtatctatgtttccaaaaaaggaacagttcagaaggttgacgag 64355252

                                                                            
Query: 640      taagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacattca 699
                |||||| ||||||||||| ||||||||   |||||||||||||||||||||||| |||||
Sbjct: 64355251 taagatctgagttgtcccagctacaga---aacaagatgccagatgattcttcagattca 64355195

                                                         
Query: 700      tttgtgatgttttacgatacaataaaaagtctattgactta 740
                ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 64355194 tttgtgatgttttactatacaataaaaagtctattgactta 64355154


>Sscrofa_Chr09 
||          Length = 153670197

 Score =  795 bits (401), Expect = 0.0
 Identities = 624/694 (89%), Gaps = 7/694 (1%)
 Strand = Plus / Plus

                                                                           
Query: 39      gctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacat 98
               |||||||||||||||||||||||| | |||| |||||| ||||||||||||||| |||  
Sbjct: 7459680 gctctttgccgcatctactgcgaggaggaagcccattcccagcaatcagactgttgacgg 7459739

                                                                           
Query: 99      tccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagagg 158
               ||||| ||||||||||||| | ||||||||| || | | ||  | |||||||||| | ||
Sbjct: 7459740 tccaggaaatgtcgacatccctctaaaaggatgcgcggccacggagaagggcccccgggg 7459799

                                                                           
Query: 159     cactctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaa 218
               ||||  ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7459800 cact--gaggagggacttcgaccacatcagtgtagaactcagtctccttggaaagaaaaa 7459857

                                                                           
Query: 219     gaagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcac 278
               ||   ||||||||||||||||| ||||||||||||||||||||||||| || | ||||||
Sbjct: 7459858 ga---ggctccgggttgacaaacggtggggaaatagaaaggaactggctacgggtcgcac 7459914

                                                                           
Query: 279     catctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgttacaagat 338
               | ||||||||||   ||||||||||||| ||||||| |||||||||  ||||||||||||
Sbjct: 7459915 cctctgtagtcacacacagaatatgatccagggtgtcacactgggcg-ccgttacaagat 7459973

                                                                           
Query: 339     gaggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctcttgt 398
               |||| |||||||||| ||| |||||| | ||||||| || ||||||||||| ||||||||
Sbjct: 7459974 gagggctgtgtatgcgcacatccccacccacgtcgtgatgcaggagaatggctctcttgt 7460033

                                                                           
Query: 399     tgaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggggt 458
               ||||||||||| |||||||  ||||||||| |||||||||||| |||||||||||| |||
Sbjct: 7460034 tgaaatccgaatttttttgcatgaaaaatacatccgcagggtttggatgaggccagaggt 7460093

                                                                           
Query: 459     tgcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatgacattga 518
               |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 7460094 tgcttgtttagtatctcaagcccagacagatgagctgattttagaaggaa-tgacattga 7460152

                                                                           
Query: 519     acttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaggatat 578
               ||||||||||||| ||||||||||| ||||||||| ||||||  ||||||||||||| ||
Sbjct: 7460153 acttgtatcaaatccagctgctttggttcagcaagtcacaaccattaagaacaaggagat 7460212

                                                                           
Query: 579     cagaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgatga 638
                 ||| || ||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 7460213 gggaacatatttggatggtatctatgtttctgaaaaaggaaccgttcagcaggcagatga 7460272

                                                                           
Query: 639     gtaagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacattc 698
               |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 7460273 gtaagatttgagttgtcccggctacagaaacaacaagatgccagatgatagttcacattc 7460332

                                                 
Query: 699     atttgtgatgttttacgatacaataaaaagtcta 732
               |||||||||||||||| |||||||||||||||||
Sbjct: 7460333 atttgtgatgttttacaatacaataaaaagtcta 7460366



 Score =  620 bits (313), Expect = e-175
 Identities = 538/611 (88%), Gaps = 14/611 (2%)
 Strand = Plus / Minus

                                                                            
Query: 142      gtgaagggccccagaggcactctgaggagggacttcaaccacatcaatgtagaactcagt 201
                ||||||||||||||||||||||||| |||| |||  ||||||||||||||||||||||||
Sbjct: 81725747 gtgaagggccccagaggcactctgaagaggcactagaaccacatcaatgtagaactcagt 81725688

                                                                            
Query: 202      ctccttggaaagaaaaagaagaggctccgggttgacaaatggtggggaaatagaaaggaa 261
                |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 81725687 ctccttggaaagaaaaagaagaggctccaggttgacaaatggtggggaactagaaaggaa 81725628

                                                                            
Query: 262      ct---ggcaactgttcg---------caccatctgtagtcatgtacagaatatgatcaag 309
                ||   |||    ||||          ||| |||||||||||||||||||| |||||||||
Sbjct: 81725627 ctactggctgtagttcagtagttccacactatctgtagtcatgtacagaacatgatcaag 81725568

                                                                            
Query: 310      ggtgttacactgggcttccgttacaagatgaggtctgtgtatgctcacttccccatcaac 369
                || || |||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 81725567 gg-gtaacactgggcttctgttccaagatgaggtctgtgtatgctctcttccccatcaac 81725509

                                                                            
Query: 370      gtcgttattcaggagaatggttctcttgttgaaatccgaaattttttgggtgaaaaatat 429
                ||| ||||||||||||||||||||||||||||||||| |||||||  |||||||||||| 
Sbjct: 81725508 gtcattattcaggagaatggttctcttgttgaaatccaaaattttgggggtgaaaaatac 81725449

                                                                            
Query: 430      atccgcagggttcggatgaggccaggggttgcttgttcagtatctcaagcccagaaagat 489
                ||| | | ||||| ||||||||  | |||||||||||||||||||||| | |||||||||
Sbjct: 81725448 atctgtatggttcagatgaggctggtggttgcttgttcagtatctcaaacgcagaaagat 81725389

                                                                            
Query: 490      gagctgattttagaaggaaatgacattgaacttgtatcaaattcagctgctttgattcag 549
                ||||||||| | ||||||||   | |||||||||||| ||||||||||||||||||||||
Sbjct: 81725388 gagctgattcttgaaggaaacagccttgaacttgtataaaattcagctgctttgattcag 81725329

                                                                            
Query: 550      caagccacaactgttaagaacaaggatatcagaaaatttttggatggtatctatgtttct 609
                ||||||||||  |||||||||||||||||| ||||||||||||||  ||||| | |||||
Sbjct: 81725328 caagccacaaaagttaagaacaaggatatctgaaaatttttggatcatatctctatttct 81725269

                                                                            
Query: 610      gaaaaaggaacagttcagcaggctgatgagtaagatttgagttgtcccggctacagaaac 669
                || ||||||||||||||||||||||||||||||||| || |||||   ||||||||||||
Sbjct: 81725268 gagaaaggaacagttcagcaggctgatgagtaagatctgtgttgt-atggctacagaaac 81725210

                                                                            
Query: 670      aacaagatgccagatgattcttcacattcatttgtgatgttttacgatacaataaaaagt 729
                | ||||||||||||| ||||||   | ||  ||||||||||||| |||||||||||||||
Sbjct: 81725209 atcaagatgccagataattctttggactcccttgtgatgttttaagatacaataaaaagt 81725150

                           
Query: 730      ctattgactta 740
                |||||||||||
Sbjct: 81725149 ctattgactta 81725139



 Score =  591 bits (298), Expect = e-166
 Identities = 495/559 (88%), Gaps = 5/559 (0%)
 Strand = Plus / Plus

                                                                            
Query: 182      acatcaatgtagaactcagtctccttggaaagaaaaagaagaggctccgggttgacaaat 241
                ||||| |||||| |||| ||||||||||||||||||||||||||||||||| || || ||
Sbjct: 29896748 acatccatgtaggactccgtctccttggaaagaaaaagaagaggctccgggctggcacat 29896807

                                                                            
Query: 242      ggtggggaaatagaaaggaactggcaactgttcgcaccatctgtagtcatgtacagaata 301
                ||||||| |||||||| ||||  || |||| | ||||||||||||||||    |  || |
Sbjct: 29896808 ggtggggcaatagaaatgaaccagccactgctggcaccatctgtagtcacccgcgtaaca 29896867

                                                                            
Query: 302      tgatcaagggtgttacactgggcttccgttacaagatgaggtctgtgtatgctcacttcc 361
                |||||||| ||||||| ||||||| || |||||||||||||||||||||||||||| |||
Sbjct: 29896868 tgatcaagcgtgttaccctgggctccccttacaagatgaggtctgtgtatgctcacctcc 29896927

                                                                            
Query: 362      ccatcaacgtcgttattcaggagaatggttctcttgttgaaatccgaaattttttgggtg 421
                || ||| |||| |||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct: 29896928 ccgtcagcgtccttattcaggagaatggttctcttgttgaaatctgaaattttttagggg 29896987

                                                                            
Query: 422      aaaaatatatccgcagggttcggatgaggccaggggttgcttgttcagtatctcaagccc 481
                |||||||  || |||||||| |||||||||||  | |||||||||||| |||||||||||
Sbjct: 29896988 aaaaatacctctgcagggtttggatgaggccacag-ttgcttgttcagcatctcaagccc 29897046

                                                                            
Query: 482      agaaagatgagctgattttagaaggaaatgacattgaacttgtatcaaattcagctgctt 541
                |||||||||||||||||||||||||||| ||||||||||||||||||||    |||||||
Sbjct: 29897047 agaaagatgagctgattttagaaggaaacgacattgaacttgtatcaaa----gctgctt 29897102

                                                                            
Query: 542      tgattcagcaagccacaactgttaagaacaaggatatcagaaaatttttggatggtatct 601
                |||||||||||||||| || | ||  | |||||||||||||||||||||||| |||||||
Sbjct: 29897103 tgattcagcaagccacgacagctaccagcaaggatatcagaaaatttttggagggtatct 29897162

                                                                            
Query: 602      atgtttctgaaaaaggaacagttcagcaggctgatgagtaagatttgagttgtcccggct 661
                ||||||||||||||||||||||||||||||||| ||||||   | |||||||||||||||
Sbjct: 29897163 atgtttctgaaaaaggaacagttcagcaggctgctgagtattctctgagttgtcccggct 29897222

                                                                            
Query: 662      acagaaacaacaagatgccagatgattcttcacattcatttgtgatgttttacgatacaa 721
                |||||||||||||||||| ||||||| ||||  || ||||||| |||||||| |||||||
Sbjct: 29897223 acagaaacaacaagatgctagatgatgcttctgatgcatttgtcatgttttatgatacaa 29897282

                                   
Query: 722      taaaaagtctattgactta 740
                |||||||||||||| ||||
Sbjct: 29897283 taaaaagtctattggctta 29897301



 Score =  115 bits (58), Expect = 6e-23
 Identities = 61/62 (98%)
 Strand = Plus / Minus

                                                                            
Query: 41       tctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacattc 100
                ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81725826 tctttgctgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacattc 81725767

                  
Query: 101      ca 102
                ||
Sbjct: 81725766 ca 81725765


>Sscrofa_Chr05 
||          Length = 111506441

 Score =  720 bits (363), Expect = 0.0
 Identities = 624/706 (88%), Gaps = 5/706 (0%)
 Strand = Plus / Minus

                                                                            
Query: 39       gctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacat 98
                |||||||||| ||||| || |||||||||  ||||  ||||||||||||||||||| || 
Sbjct: 79912201 gctctttgccacatctccttcgagaatgacaaccaccctcagcaatcagactgtcgccac 79912142

                                                                            
Query: 99       tccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagagg 158
                ||| ||||| ||| ||||||| |||||||||| ||| || || | |||||| ||||||||
Sbjct: 79912141 tccggaaaaagtcaacatcactctaaaaggacacaccgttatcgcgaagggtcccagagg 79912082

                                                                            
Query: 159      cactctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaa 218
                 ||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 79912081 tactctgaggagagacttcaaccacatcaatgtggaactcagtctctttggaaagaaaaa 79912022

                                                                            
Query: 219      gaagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcac 278
                |||||||||| |||||||||||||||||| |||||||||||||||||| |||||  ||||
Sbjct: 79912021 gaagaggctctgggttgacaaatggtgggaaaatagaaaggaactggctactgtcggcac 79911962

                                                                            
Query: 279      catctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgttacaagat 338
                  |||||||||||||||||||| ||||||||||| |||| | ||||||| | |||| |||
Sbjct: 79911961 tgtctgtagtcatgtacagaatgtgatcaagggtattacgccgggcttctgctacacgat 79911902

                                                                            
Query: 339      gaggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctcttgt 398
                ||||||||||| ||||||| | ||||||||| || |||||||| ||||||||||||||||
Sbjct: 79911901 gaggtctgtgtgtgctcacattcccatcaacatcattattcagaagaatggttctcttgt 79911842

                                                                            
Query: 399      tgaaatccgaaatttt-ttgggtgaaaaatatatccgcagggttcggatgaggccagggg 457
                ||||||||| ||||||   |||| |||| || ||||||||||||| ||||||||||||||
Sbjct: 79911841 tgaaatccggaattttggggggtaaaaagtacatccgcagggttcagatgaggccagggg 79911782

                                                                            
Query: 458      ttgcttgttcagtatctc--aagcccagaaagatgagctgattttagaaggaaatgacat 515
                ||||||||||||| ||||  ||||| |||||||||||   ||| | ||||||||  ||||
Sbjct: 79911781 ttgcttgttcagtgtctcaaaagcctagaaagatgagtcaattcttgaaggaaacaacat 79911722

                                                                            
Query: 516      tgaacttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaagga 575
                 |||||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct: 79911721 ggaacttgtatgaaattcagctgctttgattcagcgagccacagcagttaagaacaagga 79911662

                                                                            
Query: 576      tatcagaaaatttttggatggt-atctatgtttctgaaaaaggaacagttcagcaggctg 634
                |||||||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct: 79911661 tatcagaaaaattttggatggtcatctacgtttctgaaaaaggaaaagttcagcaggctg 79911602

                                                                            
Query: 635      atgagtaagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcac 694
                ||||||||||| |||||||| || | ||| |||||| ||| |||||||||||||||||| 
Sbjct: 79911601 atgagtaagatctgagttgt-ccagttacggaaacagcaaaatgccagatgattcttcag 79911543

                                                              
Query: 695      attcatttgtgatgttttacgatacaataaaaagtctattgactta 740
                | ||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 79911542 actcatttgagatgttttaagatacaataaaaagtctattgactta 79911497


>Sscrofa_Chr08 
||          Length = 148491826

 Score =  710 bits (358), Expect = 0.0
 Identities = 612/692 (88%), Gaps = 11/692 (1%)
 Strand = Plus / Plus

                                                                            
Query: 44       ttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacattccag 103
                |||| |||||||||| ||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct: 89171334 ttgctgcatctactgagagaatgaagaccattctcagaaatcagactgttgacatttcag 89171393

                                                                            
Query: 104      aaaat-gtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagaggcact 162
                ||||| ||| ||||| | ||||||||| ||||||  |||||||||  |||||||||||||
Sbjct: 89171394 aaaattgtcaacatccctctaaaaggatgcacagctattgtgaag--ccccagaggcact 89171451

                                                                            
Query: 163      ctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaagaag 222
                ||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 89171452 ctgaggagggactttgaccacatcaatgtagaactcaatctccttggaaagaaaaagaag 89171511

                                                                            
Query: 223      aggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcaccatc 282
                | |||| |||| |||||||| ||||||||||||||||||||| |  |||||| ||| || 
Sbjct: 89171512 aagctctgggtcgacaaatgatggggaaatagaaaggaactgactgctgttcacactatt 89171571

                                                                            
Query: 283      tgtagtcatgtacagaatatgatcaagggtgttacactgggcttccg------ttacaag 336
                ||||||||| ||||||| | |||||||| ||| |||||||||||| |      ||||| |
Sbjct: 89171572 tgtagtcatatacagaacacgatcaaggatgtaacactgggcttcggcttctgttaca-g 89171630

                                                                            
Query: 337      atgaggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctctt 396
                ||||||||||||||||||||||||||||||| |||| |||||||| || |||||||||||
Sbjct: 89171631 atgaggtctgtgtatgctcacttccccatcagcgtccttattcagaaggatggttctctt 89171690

                                                                            
Query: 397      gttgaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggg 456
                |||||||||| | |||||  |||||||||||| || | |||  ||| |||||||||||||
Sbjct: 89171691 gttgaaatccaatattttgggggtgaaaaatacattcacagcattcagatgaggccaggg 89171750

                                                                            
Query: 457      gttgcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatgacatt 516
                |||||||||||| |||||| |||||||||||||||| ||||| | |||||||||||||||
Sbjct: 89171751 gttgcttgttcaatatctccagcccagaaagatgagttgattcttgaaggaaatgacatt 89171810

                                                                            
Query: 517      gaacttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaggat 576
                ||||||||||||||||| |||||||||||||||||||||||||| | | |||||||||||
Sbjct: 89171811 gaacttgtatcaaattcggctgctttgattcagcaagccacaacagctgagaacaaggat 89171870

                                                                            
Query: 577      atcagaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgat 636
                ||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 89171871 attggaaaatttttggatggtatctatgtttctgaaaaaggaacagttcatcaggctgat 89171930

                                                                            
Query: 637      gagtaagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacat 696
                |||| |||| ||||||||   | || ||||| ||||||||||||||||||||| ||| | 
Sbjct: 89171931 gagtgagatctgagttgt-ttgtctccagaatcaacaagatgccagatgattcctcagac 89171989

                                                
Query: 697      tcatttgtgatgttttacgatacaataaaaag 728
                ||||||||||| ||||| ||||| ||||||||
Sbjct: 89171990 tcatttgtgatattttaagatacgataaaaag 89172021



 Score =  268 bits (135), Expect = 7e-69
 Identities = 135/135 (100%)
 Strand = Plus / Minus

                                                                            
Query: 321      gggcttccgttacaagatgaggtctgtgtatgctcacttccccatcaacgtcgttattca 380
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32310791 gggcttccgttacaagatgaggtctgtgtatgctcacttccccatcaacgtcgttattca 32310732

                                                                            
Query: 381      ggagaatggttctcttgttgaaatccgaaattttttgggtgaaaaatatatccgcagggt 440
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32310731 ggagaatggttctcttgttgaaatccgaaattttttgggtgaaaaatatatccgcagggt 32310672

                               
Query: 441      tcggatgaggccagg 455
                |||||||||||||||
Sbjct: 32310671 tcggatgaggccagg 32310657



 Score =  232 bits (117), Expect = 4e-58
 Identities = 117/117 (100%)
 Strand = Plus / Minus

                                                                            
Query: 534      agctgctttgattcagcaagccacaactgttaagaacaaggatatcagaaaatttttgga 593
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32309519 agctgctttgattcagcaagccacaactgttaagaacaaggatatcagaaaatttttgga 32309460

                                                                         
Query: 594      tggtatctatgtttctgaaaaaggaacagttcagcaggctgatgagtaagatttgag 650
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32309459 tggtatctatgtttctgaaaaaggaacagttcagcaggctgatgagtaagatttgag 32309403



 Score =  232 bits (117), Expect = 4e-58
 Identities = 117/117 (100%)
 Strand = Plus / Minus

                                                                            
Query: 109      gtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagaggcactctgagg 168
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32313610 gtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagaggcactctgagg 32313551

                                                                         
Query: 169      agggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaagaagagg 225
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32313550 agggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaagaagagg 32313494



 Score =  186 bits (94), Expect = 2e-44
 Identities = 97/98 (98%)
 Strand = Plus / Minus

                                                                            
Query: 225      gctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcaccatctg 284
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32312505 gctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcaccatctg 32312446

                                                      
Query: 285      tagtcatgtacagaatatgatcaagggtgttacactgg 322
                |||||| |||||||||||||||||||||||||||||||
Sbjct: 32312445 tagtcacgtacagaatatgatcaagggtgttacactgg 32312408



 Score =  182 bits (92), Expect = 3e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                            
Query: 649      agttgtcccggctacagaaacaacaagatgccagatgattcttcacattcatttgtgatg 708
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32309122 agttgtcccggctacagaaacaacaagatgccagatgattcttcacattcatttgtgatg 32309063

                                                
Query: 709      ttttacgatacaataaaaagtctattgactta 740
                ||||||||||||||||||||||||||||||||
Sbjct: 32309062 ttttacgatacaataaaaagtctattgactta 32309031



 Score =  168 bits (85), Expect = 5e-39
 Identities = 346/429 (80%), Gaps = 8/429 (1%)
 Strand = Plus / Plus

                                                                            
Query: 203      tccttggaaagaaaaagaagaggctccgggttgacaaatggtggggaaatagaaaggaac 262
                |||||||||||| ||||| ||||||| |  ||||||||  | ||||||||| ||||||||
Sbjct: 60466409 tccttggaaagagaaagaggaggctctgaattgacaaactggggggaaataaaaaggaac 60466468

                                                                            
Query: 263      tggcaactgttcgcaccatctgtagtcatgtacagaatatgatcaagggtgttacactgg 322
                |||| ||  || |  | |||| |||||||| ||||||| ||||||| ||  | |  ||||
Sbjct: 60466469 tggctaccttttgtgctatctttagtcatgcacagaatgtgatcaaaggaatgatgctgg 60466528

                                                                            
Query: 323      gcttccgttacaagatgaggtctgtgtatgctcacttccccatcaacgtcgttattcagg 382
                ||||  ||| ||||||||| |     ||  ||||| || |||||| | | ||| ||||  
Sbjct: 60466529 gctttggtttcaagatgagct-----tacactcacatctccatcagcatggttgttcaaa 60466583

                                                                            
Query: 383      agaatggttctcttgttgaaatccgaaattttttgggtgaaaaa-tatatccgcagggtt 441
                ||||||| |||| ||||  |||  |||||||  ||||||||||| |||| || |||||||
Sbjct: 60466584 agaatgggtctcctgttataatgtgaaatttcctgggtgaaaaaatatagccacagggtt 60466643

                                                                            
Query: 442      cggatgaggccaggggttgcttgttcagtatctcaagc-ccagaaagatgagctgatttt 500
                | |||||||||||   ||||||||||||||||||| || |||||||  | || | |||| 
Sbjct: 60466644 cagatgaggccagacattgcttgttcagtatctcacgcaccagaaaagtaagttaatttc 60466703

                                                                            
Query: 501      agaaggaaatgacattgaacttgtatcaaattcagctgctttgattcagcaagccacaac 560
                 |||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 60466704 tgaaggaaatgacattgaacttgtaacaaatccagctgctttaatttagcaagcc-caac 60466762

                                                                            
Query: 561      tgttaagaacaaggatatcagaaaatttttggatggtatctatgtttctgaaaaaggaac 620
                 ||||| ||||  |||| |||| || ||||||||||||| ||||| |||||||| |||||
Sbjct: 60466763 agttaaaaacacagatagcagagaaattttggatggtatttatgtctctgaaaatggaac 60466822

                         
Query: 621      agttcagca 629
                |||||||||
Sbjct: 60466823 agttcagca 60466831



 Score =  165 bits (83), Expect = 8e-38
 Identities = 83/83 (100%)
 Strand = Plus / Minus

                                                                            
Query: 453      aggggttgcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatga 512
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32309852 aggggttgcttgttcagtatctcaagcccagaaagatgagctgattttagaaggaaatga 32309793

                                       
Query: 513      cattgaacttgtatcaaattcag 535
                |||||||||||||||||||||||
Sbjct: 32309792 cattgaacttgtatcaaattcag 32309770



 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 49/49 (100%)
 Strand = Plus / Minus

                                                                 
Query: 61       agaatgaagaccattctcagcaatcagactgtcgacattccagaaaatg 109
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32313748 agaatgaagaccattctcagcaatcagactgtcgacattccagaaaatg 32313700



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 48/49 (97%)
 Strand = Plus / Minus

                                                                 
Query: 14       aaaagcgtgatgacgaaagacgctcgctctttgccgcatctactgcgag 62
                ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 32314244 aaaagcgtgatgacgaaagacgctctctctttgccgcatctactgcgag 32314196


>Sscrofa_Chr11 
||          Length = 87690581

 Score =  634 bits (320), Expect = e-179
 Identities = 610/703 (86%), Gaps = 4/703 (0%)
 Strand = Plus / Plus

                                                                            
Query: 39       gctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacat 98
                ||||||||||||| | |||||||||||||||| | ||||||||||| | |||| | ||||
Sbjct: 74654202 gctctttgccgcagccactgcgagaatgaagagccttctcagcaatgaaactgccaacat 74654261

                                                                            
Query: 99       tccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagagg 158
                ||||||  |||| | |||||| || ||| ||||||| ||| |||||||||||||||||||
Sbjct: 74654262 tccagagcatgtgggcatcactctgaaaagacgcacggtccttgtgaagggccccagagg 74654321

                                                                            
Query: 159      cactctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaa 218
                |||   |||||||||| ||| |||| || ||| |||||||||||||||||||||| ||||
Sbjct: 74654322 cacc--gaggagggacgtcagccacctcgatggagaactcagtctccttggaaaggaaaa 74654379

                                                                            
Query: 219      gaagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcac 278
                |||||||||||||||||||| |||||||||||  |||||||||  ||| |||||||||||
Sbjct: 74654380 gaagaggctccgggttgacacatggtggggaaggagaaaggaagcggctactgttcgcac 74654439

                                                                            
Query: 279      catctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgttacaagat 338
                ||||||| | || ||| || ||| |||||  |||| ||||||| ||||| | | ||||| 
Sbjct: 74654440 catctgtggccacgtagaggataggatcagaggtggtacactgagcttcggctccaagaa 74654499

                                                                            
Query: 339      gaggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctcttgt 398
                | |||||| | |  ||||| ||||||||| |||| ||||||||||||||||||||| |||
Sbjct: 74654500 ggggtctggggacactcacgtccccatcagcgtccttattcaggagaatggttctcctgt 74654559

                                                                            
Query: 399      tgaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggggt 458
                |||||||||| |||||||| |||||||||| |||||||||||||||||||||||  ||||
Sbjct: 74654560 tgaaatccgacattttttgagtgaaaaatacatccgcagggttcggatgaggccgtgggt 74654619

                                                                            
Query: 459      tgcttgttcagtatctc-aagcccagaaagatgagctgattttagaaggaaatgacattg 517
                ||| |||||| |||||| ||||||||||| ||||||||||  |||||||||| ||| |||
Sbjct: 74654620 tgcgtgttcaatatctctaagcccagaaacatgagctgatgctagaaggaaacgaccttg 74654679

                                                                            
Query: 518      aacttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaggata 577
                |||||||||||||||||||||||| ||||||||| ||||||||  |||||| | ||||||
Sbjct: 74654680 aacttgtatcaaattcagctgcttcgattcagcacgccacaacaattaagagcgaggata 74654739

                                                                            
Query: 578      tcagaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgatg 637
                | |||||  |||||| |  |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 74654740 ttagaaacgttttggttaatatctatgtttctgaaaaaggaacggttcagcaggctgatg 74654799

                                                                            
Query: 638      agtaagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacatt 697
                || ||||| ||||| |||| || || ||||||| ||||||||| | |||||||||| | |
Sbjct: 74654800 aggaagatctgagtggtccagg-tagagaaacagcaagatgccgggtgattcttcagact 74654858

                                                           
Query: 698      catttgtgatgttttacgatacaataaaaagtctattgactta 740
                |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 74654859 catttgtgatgttttaagatacaataaaaagtctattgactta 74654901



 Score =  521 bits (263), Expect = e-145
 Identities = 461/524 (87%), Gaps = 6/524 (1%)
 Strand = Plus / Minus

                                                                            
Query: 60       gagaatgaagaccattctcagcaatcagactgtcgacattccagaaaatgtcgacatcac 119
                |||||||||||||||| |||||| |||  |||||||||||||||||||||| ||||||||
Sbjct: 56039017 gagaatgaagaccattgtcagcagtca--ctgtcgacattccagaaaatgttgacatcac 56038960

                                                                            
Query: 120      actaaaaggacgcacagtcattgtgaagggccccagaggcactctgaggagggacttcaa 179
                 |||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 56038959 tctaaaaggacacacagtcatcgcgaagggccccagaggcactctgaggagggacttcaa 56038900

                                                                            
Query: 180      ccacatcaatgtagaactcagtctccttggaaagaaaaagaagaggctccgggttgacaa 239
                ||||||||||||||||||||| ||||||| | |||||||  |||||||||||||||||| 
Sbjct: 56038899 ccacatcaatgtagaactcaggctccttgaagagaaaaa--agaggctccgggttgacag 56038842

                                                                            
Query: 240      atggtggggaaatagaaaggaactggcaactgttcgcaccatctgtagtcatgtacagaa 299
                | ||||||||||||||||| ||||||| | |||||||| | || || || ||||||||||
Sbjct: 56038841 acggtggggaaatagaaagaaactggctattgttcgcatcgtccgtggttatgtacagaa 56038782

                                                                            
Query: 300      tatgatcaagggtgttacactgggcttccgttacaagatgaggtctgtgtatgctcactt 359
                |||| ||||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||
Sbjct: 56038781 tatggtcaagggtggtacaccgggcttccgttacaagatgcggtctgtgtacgctcactt 56038722

                                                                            
Query: 360      ccccatcaacgtcgttattcaggagaatggttctcttgttgaaatccgaaattttttggg 419
                |||| |||| ||| |||||||||||| ||| | ||||||||||||| ||||||||  || 
Sbjct: 56038721 ccccgtcaatgtcattattcaggagagtggctttcttgttgaaatctgaaattttggggc 56038662

                                                                            
Query: 420      tgaaaaatatatccgcagggttcggatgaggccaggggttgcttgttcagt--atctcaa 477
                ||| | ||| |||  ||||||| ||||| ||||||||||||||||||||||   | ||||
Sbjct: 56038661 tgatacatacatctacagggtttggatgcggccaggggttgcttgttcagtcagtatcaa 56038602

                                                                            
Query: 478      gcccagaaagatgagctgattttagaaggaaatgacattgaacttgtatcaaattcagct 537
                ||||   |||||||||||||| |||||||||| | ||||| ||| |||||||||||||||
Sbjct: 56038601 gcccttgaagatgagctgattctagaaggaaacggcattggactggtatcaaattcagct 56038542

                                                            
Query: 538      gctttgattcagcaagccacaactgttaagaacaaggatatcag 581
                |||| |||||||||||||||  | ||||||||||||| ||||||
Sbjct: 56038541 gcttggattcagcaagccacggcagttaagaacaagggtatcag 56038498



 Score =  163 bits (82), Expect = 3e-37
 Identities = 154/176 (87%), Gaps = 9/176 (5%)
 Strand = Plus / Minus

                                                                            
Query: 565      aagaacaaggatatcagaaaatttttggatggtatctatgtttctgaaaaaggaacagtt 624
                ||||||||||||||||||||||||||||||||||||||||||||||||||      ||||
Sbjct: 56038229 aagaacaaggatatcagaaaatttttggatggtatctatgtttctgaaaa------agtt 56038176

                                                                            
Query: 625      cagcaggctgatgagtaagatttgagttgtcccggctacagaaacaacaagatgccagat 684
                |||||| ||||||| |||||| ||||||||  | |||  ||| ||||| |||||||||||
Sbjct: 56038175 cagcagactgatgactaagatctgagttgt-tcagct--agagacaacgagatgccagat 56038119

                                                                        
Query: 685      gattcttcacattcatttgtgatgttttacgatacaataaaaagtctattgactta 740
                ||||| ||| | ||||||||||||||||| |||| |||| ||||||||||||||||
Sbjct: 56038118 gattcctcagactcatttgtgatgttttatgatagaatagaaagtctattgactta 56038063


>gb|GL893383.2| Sus scrofa unplaced genomic scaffold ChrUScaf1268
          Length = 147189

 Score =  626 bits (316), Expect = e-177
 Identities = 609/703 (86%), Gaps = 4/703 (0%)
 Strand = Plus / Plus

                                                                          
Query: 39     gctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacat 98
              ||||||||||||| | |||||||||||||||| | ||||||||||| | |||| | ||||
Sbjct: 120148 gctctttgccgcagccactgcgagaatgaagagccttctcagcaatgaaactgccaacat 120207

                                                                          
Query: 99     tccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagagg 158
              ||||||  |||| | |||| | || ||| ||||||| ||| |||||||||||||||||||
Sbjct: 120208 tccagagcatgtgggcatccctctgaaaagacgcacggtccttgtgaagggccccagagg 120267

                                                                          
Query: 159    cactctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaagaaaaa 218
              |||   |||||||||| ||| |||| || ||| |||||||||||||||||||||| ||||
Sbjct: 120268 cacc--gaggagggacgtcagccacctcgatggagaactcagtctccttggaaaggaaaa 120325

                                                                          
Query: 219    gaagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgttcgcac 278
              |||||||||||||||||||| |||||||||||  |||||||||  ||| |||||||||||
Sbjct: 120326 gaagaggctccgggttgacacatggtggggaaggagaaaggaagcggctactgttcgcac 120385

                                                                          
Query: 279    catctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgttacaagat 338
              ||||||  | || ||| || ||| |||||  |||| ||||||| ||||| | | ||||| 
Sbjct: 120386 catctgcggccacgtagaggataggatcagaggtggtacactgagcttcggctccaagaa 120445

                                                                          
Query: 339    gaggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttctcttgt 398
              | |||||| | |  ||||| ||||||||| |||| ||||||||||||||||||||| |||
Sbjct: 120446 ggggtctggggacactcacgtccccatcagcgtccttattcaggagaatggttctcctgt 120505

                                                                          
Query: 399    tgaaatccgaaattttttgggtgaaaaatatatccgcagggttcggatgaggccaggggt 458
              |||||||||| |||||||| |||||||||| |||||||||||||||||||||||  ||||
Sbjct: 120506 tgaaatccgacattttttgagtgaaaaatacatccgcagggttcggatgaggccgtgggt 120565

                                                                          
Query: 459    tgcttgttcagtatctc-aagcccagaaagatgagctgattttagaaggaaatgacattg 517
              ||| |||||| |||||| ||||||||||| ||||||||||   ||||||||| ||| |||
Sbjct: 120566 tgcgtgttcaatatctctaagcccagaaacatgagctgatgccagaaggaaacgaccttg 120625

                                                                          
Query: 518    aacttgtatcaaattcagctgctttgattcagcaagccacaactgttaagaacaaggata 577
              |||||||||||||||||||||||| ||||||||| |||||||| ||||||||  ||||||
Sbjct: 120626 aacttgtatcaaattcagctgcttcgattcagcacgccacaacagttaagaaggaggata 120685

                                                                          
Query: 578    tcagaaaatttttggatggtatctatgtttctgaaaaaggaacagttcagcaggctgatg 637
              | |||||  ||||||||  |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 120686 ttagaaacgttttggataatatctatgtttctgaaaaaggaacggttcagcaggctgatg 120745

                                                                          
Query: 638    agtaagatttgagttgtcccggctacagaaacaacaagatgccagatgattcttcacatt 697
              || ||||| ||||| |||| || || ||||||| ||||||||| | |||||||||| | |
Sbjct: 120746 aggaagatctgagtggtccagg-tagagaaacagcaagatgccgggtgattcttcagact 120804

                                                         
Query: 698    catttgtgatgttttacgatacaataaaaagtctattgactta 740
              |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 120805 catttgtgatgttttaagatacaataaaaagtctattgactta 120847


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  450 bits (227), Expect = e-124
 Identities = 492/577 (85%), Gaps = 29/577 (5%)
 Strand = Plus / Minus

                                                                            
Query: 145      aagggccccagaggcactctgaggagggacttcaaccacatcaatgtagaactcagtctc 204
                ||||| |||||||||||||||||||||||||||| ||||||||            |||||
Sbjct: 12936274 aaggggcccagaggcactctgaggagggacttcagccacatca------------gtctc 12936227

                                                                            
Query: 205      cttggaaagaaaaagaagaggctccgggttgacaaatggtggggaaatagaaaggaactg 264
                 | ||||||||||||||||||||||||||||||| | ||  || |||||||||||| |||
Sbjct: 12936226 nt-ggaaagaaaaagaagaggctccgggttgacagacggcaggaaaatagaaaggagctg 12936168

                                                                            
Query: 265      gcaactgttcgcaccatctgtagtcatgtacagaatatgatcaagggtgttacactgggc 324
                || |||||  ||||  ||||||||| |||||||||  ||||||||||||||||  |||||
Sbjct: 12936167 gcgactgtgtgcactgtctgtagtcttgtacagaacgtgatcaagggtgttac--tgggc 12936110

                                                                            
Query: 325      ttccgttacaagatgaggtctgtgtatgctcacttccccatcaacgtcgttattcaggag 384
                ||| |||| | ||||| || ||      | |||||||||||||| |||||||||||||||
Sbjct: 12936109 ttctgttagaggatgaagtgtg------cccacttccccatcaatgtcgttattcaggag 12936056

                                                                            
Query: 385      aatggttctcttgttgaaatccgaaattttttgggtgaaaaatatatccgcagggttcgg 444
                ||| |||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||| |
Sbjct: 12936055 aattgttctcttgttgaaatccaaaactttttgggtgaaaaatacatctgcagggttcag 12935996

                                                                            
Query: 445      atgaggccaggggttgcttgttcagtatctcaagcccagaaagatgagctgattttagaa 504
                |||||| ||||  ||||||||||||||||||||||||||| || |||     || | |||
Sbjct: 12935995 atgagggcaggcattgcttgttcagtatctcaagcccagatagttga-----ttcttgaa 12935941

                                                                            
Query: 505      ggaaatgacattgaacttgtatcaaattcagctgctttgattcagcaagccacaactgtt 564
                ||||| |||| |||||||||||||||||||||||||||| || |||||| |||||| |||
Sbjct: 12935940 ggaaacgacactgaacttgtatcaaattcagctgctttggtttagcaagtcacaacagtt 12935881

                                                                            
Query: 565      aagaacaaggatatcagaaaatttttggatggtatctatgtttctg-aaaaaggaacagt 623
                |||||||| |||||||||||||||  |||||||||||||||||||| ||||||||| |||
Sbjct: 12935880 aagaacaa-gatatcagaaaatttggggatggtatctatgtttctgaaaaaaggaatagt 12935822

                                                                            
Query: 624      tcagcaggctgatgagtaagatttgagttgtcccggctacagaaacaacaagatgccaga 683
                |||||||||||||||||||||  ||||||||   ||||||||||||| ||||||||||| 
Sbjct: 12935821 tcagcaggctgatgagtaagacctgagttgt-ttggctacagaaacagcaagatgccagg 12935763

                                                     
Query: 684      tgattcttcacattcatttgtgatgttttacgataca 720
                |||||| ||| | ||||||||||||||||| ||||||
Sbjct: 12935762 tgattcctcagactcatttgtgatgttttaagataca 12935726


>Sscrofa_Chr14 
||          Length = 153851969

 Score =  448 bits (226), Expect = e-123
 Identities = 438/508 (86%), Gaps = 13/508 (2%)
 Strand = Plus / Plus

                                                                            
Query: 153      cagaggcactctgaggagggacttcaaccacatcaatgtagaactcagtctccttggaaa 212
                ||||||||| |||||||| ||||||||||||||||||| || ||||||||| ||  ||||
Sbjct: 41619957 cagaggcaccctgaggagagacttcaaccacatcaatggaggactcagtcttctctgaaa 41620016

                                                                            
Query: 213      gaaaaagaagaggctccgggttgacaaatggtggggaaatagaaaggaactggcaactgt 272
                ||||||||   |||||| ||||||||||||||||||||||||||||    ||||||| ||
Sbjct: 41620017 gaaaaaga---ggctccaggttgacaaatggtggggaaatagaaag----tggcaacagt 41620069

                                                                            
Query: 273      tcgcaccatctgtagtcatgtacagaatatgatcaagggtgttacactgggcttccgtta 332
                ||  || |||| |||||||||||| || ||||||| | |||||||||| |||||||||||
Sbjct: 41620070 tcctactatctatagtcatgtacacaacatgatcacgtgtgttacactaggcttccgtta 41620129

                                                                            
Query: 333      caagatgaggtctgtgtatgctcacttccccatcaacgtcgttattcaggagaatggttc 392
                |||||  ||||||||||||||| || ||||||||||  || |||||||  |||  |||||
Sbjct: 41620130 caagacaaggtctgtgtatgcttacctccccatcaatatcattattcaatagagcggttc 41620189

                                                                            
Query: 393      tcttgttgaaatccgaaattttttggg------tgaaaaatatatccgcagggttcggat 446
                |||||| ||||||| ||||||   |||      ||||||||| |||| ||| ||| ||||
Sbjct: 41620190 tcttgtggaaatccaaaatttggggggagggggtgaaaaatacatccacagcgtttggat 41620249

                                                                            
Query: 447      gaggccaggggttgcttgttcagtatctcaagcccagaaagatgagctgattttagaagg 506
                |||||||||  ||||||||||| |||||||| |||||||||||||| ||||| | |||||
Sbjct: 41620250 gaggccaggcattgcttgttcaatatctcaaacccagaaagatgagttgattcttgaagg 41620309

                                                                            
Query: 507      aaatgacattgaacttgtatcaaattcagctgctttgattcagcaagccacaactgttaa 566
                |||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||
Sbjct: 41620310 aaatgacattgaacttgtattaaattcagcttctttgattcagcaagccacaacagttaa 41620369

                                                                            
Query: 567      gaacaaggatatcagaaaatttttggatggtatctatgtttctgaaaaaggaacagttca 626
                 |||||| |||||||||||| |  ||||| ||| ||||||||||||||||||||||||||
Sbjct: 41620370 aaacaagtatatcagaaaatctggggatgatatatatgtttctgaaaaaggaacagttca 41620429

                                            
Query: 627      gcaggctgatgagtaagatttgagttgt 654
                |||||||||||| |||||| ||||||||
Sbjct: 41620430 gcaggctgatgaataagatctgagttgt 41620457


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  414 bits (209), Expect = e-113
 Identities = 321/355 (90%), Gaps = 5/355 (1%)
 Strand = Plus / Plus

                                                                            
Query: 383      agaatggttctcttgttgaaatccgaaattttttgggtgaaaaatatatccgcagggttc 442
                ||||||||||||||| |||||||| |||||||  |||||||||||| |||| |||| |||
Sbjct: 35951511 agaatggttctcttgctgaaatccaaaattttgggggtgaaaaatacatccacaggtttc 35951570

                                                                            
Query: 443      ggatgaggccaggggttgcttgttcagtatctcaagcccagaaagatgagctgattttag 502
                 ||||| ||||||  || | |||||||||||||||||||||||||||||| ||||| | |
Sbjct: 35951571 tgatgaagccaggcattacgtgttcagtatctcaagcccagaaagatgagttgattcttg 35951630

                                                                            
Query: 503      aaggaaatgacattgaacttgtatcaaattcagctgctttgattcagcaagccacaactg 562
                |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 35951631 aaggaaatgacaatgaact-gtatcaaattcagctgctttgattcagcaagccacaacag 35951689

                                                                            
Query: 563      ttaagaacaaggatatcagaaaatttttggatggtatctatgtttctgaaaaaggaacag 622
                |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 35951690 ttaagaacaaggatatcagaaaatttttggatggtatctaagtttctgaaaaaggaacag 35951749

                                                                            
Query: 623      ttcagcaggctgatgagtaagatttgagttgtcccggctacagaaacaacaagatgccag 682
                ||||||||||||||||||||||| |||||||| | ||||| |||   ||||| |||||||
Sbjct: 35951750 ttcagcaggctgatgagtaagatctgagttgt-ctggctataga---aacaatatgccag 35951805

                                                                       
Query: 683      atgattcttcacattcatttgtgatgttttacgatacaataaaaagtctattgac 737
                ||||||||||| | |||| |||||||||||| |||| ||||||||| ||||||||
Sbjct: 35951806 atgattcttcagactcatctgtgatgttttaagatataataaaaagcctattgac 35951860



 Score =  285 bits (144), Expect = 3e-74
 Identities = 258/296 (87%), Gaps = 15/296 (5%)
 Strand = Plus / Plus

                                                                            
Query: 77       tcagcaatcagactgtcgacattccagaaaatgtcgacatcacactaaaaggacgcacag 136
                |||||||||||||||||||||||||| ||||||| |||||||  | |||||||| |||||
Sbjct: 35950946 tcagcaatcagactgtcgacattcca-aaaatgttgacatcattccaaaaggacacacag 35951004

                                                                            
Query: 137      tcattgtgaagggccccagaggcactctgaggagggacttcaaccacatcaatgtagaac 196
                | ||| ||||||||||||||||||||             ||  |||||||||| ||||| 
Sbjct: 35951005 ttattatgaagggccccagaggcact-------------tcgtccacatcaatctagaat 35951051

                                                                            
Query: 197      tcagtctccttggaaagaaaaagaagaggctccgggttgacaaatggtggggaaatagaa 256
                |||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||
Sbjct: 35951052 tcagtctccttggaaagaaaaagaagaggctccacgttgaaaaatggtggggaaatagaa 35951111

                                                                            
Query: 257      aggaactggcaactgttcgcaccatctgtagtcatgtacagaatatgatcaagggtgtta 316
                |||||||||| |||||| |||| ||||||||||||||||| || || |||||||| ||||
Sbjct: 35951112 aggaactggctactgtttgcactatctgtagtcatgtacacaacatcatcaaggg-gtta 35951170

                                                                        
Query: 317      cactgggcttccgttacaagatgaggtctgtgtatgctcacttccccatcaacgtc 372
                |||||||||||||||||||||| || |||||||||| |||||||||||||||||||
Sbjct: 35951171 cactgggcttccgttacaagataagctctgtgtatgttcacttccccatcaacgtc 35951226


>gb|GL892798.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1627
          Length = 119983

 Score =  230 bits (116), Expect = 2e-57
 Identities = 208/236 (88%), Gaps = 7/236 (2%)
 Strand = Plus / Plus

                                                                         
Query: 503   aaggaaatgacattgaacttgtatcaaattcagctgctttgattcagcaagccacaactg 562
             |||||||  ||||||||||||||||||||| || |||| |||||||||||| |||||| |
Sbjct: 98181 aaggaaacaacattgaacttgtatcaaatttagatgctgtgattcagcaagtcacaacag 98240

                                                                         
Query: 563   ttaagaacaaggatatcagaaaatttttggatggtatctatgtttc---tgaaaaaggaa 619
             ||||||| ||||||||||||||||||||||||||||||||||||||     ||||| | |
Sbjct: 98241 ttaagaagaaggatatcagaaaatttttggatggtatctatgtttccaaaaaaaaatgga 98300

                                                                         
Query: 620   cagttcagcaggctgatgagtaagatttgagttgtcccggctacagaaacaacaagatgc 679
             ||||||| |||||  ||||||||||| |||||||| ||||||| |||   ||||||||||
Sbjct: 98301 cagttcatcaggccaatgagtaagatctgagttgt-ccggctataga---aacaagatgc 98356

                                                                     
Query: 680   cagatgattcttcacattcatttgtgatgttttacgatacaataaaaagtctattg 735
             |||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct: 98357 cagaagattcttcagactcatttgtgatgttttaagatacaataaaaagtctattg 98412



 Score =  216 bits (109), Expect = 2e-53
 Identities = 221/256 (86%), Gaps = 8/256 (3%)
 Strand = Plus / Plus

                                                                         
Query: 246   gggaaatagaaaggaactggcaactgttcgcaccatctgtagtcatgtacagaatatgat 305
             ||||||||||||||||||||| |||||||     ||||||||||||||| |||| |   |
Sbjct: 97829 gggaaatagaaaggaactggctactgttct----atctgtagtcatgtatagaacacagt 97884

                                                                         
Query: 306   caagggtgttacactgggcttccgttacaagatgaggtctgtgtatgctcacttccccat 365
             ||||||||||||||||||||||| || ||||||||||||| ||||  |||| ||||||||
Sbjct: 97885 caagggtgttacactgggcttccatttcaagatgaggtctatgtacactcatttccccat 97944

                                                                         
Query: 366   caacgtcgttattcaggagaatggttctcttgttgaaatccgaaattttttgggtgaaaa 425
             ||| |  |||||||||||||||||||||||||||||||||| ||| |||| ||| |||||
Sbjct: 97945 caatggtgttattcaggagaatggttctcttgttgaaatcc-aaaattttggggggaaaa 98003

                                                                         
Query: 426   atatatccgcagggttcggatgaggccagg---ggttgcttgttcagtatctcaagccca 482
             ||| |||| ||||||| |||| ||||| ||    |||||||||||||||| |||||||||
Sbjct: 98004 atacatccacagggtttggataaggcctggcattgttgcttgttcagtatttcaagccca 98063

                             
Query: 483   gaaagatgagctgatt 498
             |||||||||| |||||
Sbjct: 98064 gaaagatgagttgatt 98079



 Score =  151 bits (76), Expect = 1e-33
 Identities = 130/148 (87%)
 Strand = Plus / Plus

                                                                         
Query: 40    ctctttgccgcatctactgcgagaatgaagaccattctcagcaatcagactgtcgacatt 99
             ||||||||| ||  ||||| |||||||||| ||||||||| ||||||||||||| |||||
Sbjct: 97536 ctctttgccacacttactgagagaatgaaggccattctcaccaatcagactgtcaacatt 97595

                                                                         
Query: 100   ccagaaaatgtcgacatcacactaaaaggacgcacagtcattgtgaagggccccagaggc 159
             ||||||||||| |||||||| | |||||||| |||||| ||| |||||| ||| ||||||
Sbjct: 97596 ccagaaaatgttgacatcactcgaaaaggacacacagttattatgaaggacccaagaggc 97655

                                         
Query: 160   actctgaggagggacttcaaccacatca 187
             |||||||| |||| ||| ||||||||||
Sbjct: 97656 actctgagaaggggctttaaccacatca 97683


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,870,374
Number of extensions: 354
Number of successful extensions: 354
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 71
Length of query: 1324
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1303
Effective length of database: 2,808,413,156
Effective search space: 3659362342268
Effective search space used: 3659362342268
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)