Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002290
(1084 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076074.1| dolichyl-diphosphooligosaccharide--protein g... 464 e-131
Alignment gi|NP_001095991.1| hypothetical protein LOC539818 [Bos taurus]. 425 e-119
>ref|NP_001076074.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit 1 [Bos taurus].
Length = 609
Score = 464 bits (1194), Expect = e-131
Identities = 239/311 (76%), Positives = 250/311 (80%)
Frame = +2
Query: 152 SPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAGSSSSPRXXXXXXXXXXXXXXXXXXX 331
S +A PLVNEDVKRTVDLSSHLAKVTAEVVLAHAGS SSPR
Sbjct: 27 SSDAPPLVNEDVKRTVDLSSHLAKVTAEVVLAHAGSGSSPRAASFLLALEPELEARLAHL 86
Query: 332 GVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTLPVALDPGAKISVTVETVYTHVLQPYPT 511
GVQVKG T IKG+SGRFFTV LPVALDPGAKISV VE VYTHVLQPYPT
Sbjct: 87 GVQVKGEDEEENNLEVRETSIKGQSGRFFTVKLPVALDPGAKISVIVEAVYTHVLQPYPT 146
Query: 512 QITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 691
QITQSEKQFVVFEGNHYFYSPYPTK+Q+MRVKLASRNVESYTKLGNPTRSEDLLDYGPFR
Sbjct: 147 QITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 206
Query: 692 DVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 871
D+P YSQDTFKVHSENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY
Sbjct: 207 DIPAYSQDTFKVHSENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 266
Query: 872 DYQRQPDSGISSIRSFKPSFLLLPRMFITGMRLAMFPPTTLLILDDSVKMEIRPPFPLFG 1051
DYQRQPDSG+SS+RSFK + + + LLILDDSV+MEIRP FPLFG
Sbjct: 267 DYQRQPDSGVSSVRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG 326
Query: 1052 GWKTHYIVG*N 1084
GWKTHYIVG N
Sbjct: 327 GWKTHYIVGYN 337
>ref|NP_001095991.1| hypothetical protein LOC539818 [Bos taurus].
Length = 608
Score = 425 bits (1092), Expect = e-119
Identities = 223/336 (66%), Positives = 244/336 (72%)
Frame = +2
Query: 77 MEAPAVCXXXXXXXXWAXXXXXXXXSPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAG 256
MEAPAV A S EALPLVNE+V+RTVDLSSHLAKVTAEVVLAH G
Sbjct: 1 MEAPAVHLLPLLLLFAAWAPEPGSTSAEALPLVNEEVRRTVDLSSHLAKVTAEVVLAHTG 60
Query: 257 SSSSPRXXXXXXXXXXXXXXXXXXXGVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTLPV 436
S SSPR GVQV G TKI GKSGRFFTV LPV
Sbjct: 61 SDSSPRAASFLVALEPEFEAQLAHLGVQVTGVDEEANSLEVQETKINGKSGRFFTVQLPV 120
Query: 437 ALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLAS 616
ALDPGA++SV VE VYTH +QPYP QITQS+KQFVVFEGN+YFYSPYPTK+Q+M VKLAS
Sbjct: 121 ALDPGAEVSVVVEAVYTHAIQPYPIQITQSQKQFVVFEGNNYFYSPYPTKTQTMHVKLAS 180
Query: 617 RNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHW 796
NVESYTKLGNP R E+LLDYGPF D+P YSQD+FKVHSENNSPFLT+TSMTRVIEVSHW
Sbjct: 181 PNVESYTKLGNPMRHENLLDYGPFHDIPAYSQDSFKVHSENNSPFLTVTSMTRVIEVSHW 240
Query: 797 GNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKPSFLLLPRMFITGMRLAM 976
GNIAVEENV+LKHTGAVLKG FSRYDY + DSGISSIRSFK + +
Sbjct: 241 GNIAVEENVNLKHTGAVLKGSFSRYDYDKWIDSGISSIRSFKTILPASAQDVYYRDEIGS 300
Query: 977 FPPTTLLILDDSVKMEIRPPFPLFGGWKTHYIVG*N 1084
LLILDDSV+ME++P FPLFGGWKTHYI+G N
Sbjct: 301 IYTRHLLILDDSVEMEMKPRFPLFGGWKTHYIIGYN 336
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,537,081
Number of extensions: 985399
Number of successful extensions: 2908
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2902
Number of HSP's successfully gapped: 2
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002290
(1084 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848830.1| PREDICTED: similar to Dolichyl-diphosphooligosa... 459 e-129
Alignment gi|XP_857264.1| PREDICTED: similar to Dolichyl-diphosphooligosa... 367 e-102
>ref|XP_848830.1| PREDICTED: similar to Dolichyl-diphosphooligosaccharide--protein
glycosyltransferase 67 kDa subunit precursor (Ribophorin
I) (RPN-I) isoform 3 [Canis familiaris].
Length = 607
Score = 459 bits (1182), Expect = e-129
Identities = 238/311 (76%), Positives = 248/311 (79%)
Frame = +2
Query: 152 SPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAGSSSSPRXXXXXXXXXXXXXXXXXXX 331
SPEA LVNEDVKRTVDLSSHLAKVTAEVVLAH G S+ R
Sbjct: 25 SPEAPLLVNEDVKRTVDLSSHLAKVTAEVVLAHPGGGSTARAASFLLALEPELEARLAHL 84
Query: 332 GVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTLPVALDPGAKISVTVETVYTHVLQPYPT 511
GVQVKG TKIKGKSGRFFTV LPVALDPGAK+SV VETVYTHVLQPYPT
Sbjct: 85 GVQVKGEDEEENNLEVRETKIKGKSGRFFTVKLPVALDPGAKVSVVVETVYTHVLQPYPT 144
Query: 512 QITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 691
QITQSEKQFVVFEGNHYFYSPYPTK+Q+MRVKLASRNVESYTKLGNPTRSEDLLDYGPFR
Sbjct: 145 QITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 204
Query: 692 DVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 871
D+P YSQDTFKVH ENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY
Sbjct: 205 DIPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 264
Query: 872 DYQRQPDSGISSIRSFKPSFLLLPRMFITGMRLAMFPPTTLLILDDSVKMEIRPPFPLFG 1051
DYQRQPDSGI+SIRSFK + + + LLILDDSV+MEIRP FPLFG
Sbjct: 265 DYQRQPDSGIASIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG 324
Query: 1052 GWKTHYIVG*N 1084
GWKTHYIVG N
Sbjct: 325 GWKTHYIVGYN 335
>ref|XP_857264.1| PREDICTED: similar to Dolichyl-diphosphooligosaccharide--protein
glycosyltransferase 67 kDa subunit precursor (Ribophorin
I) (RPN-I) isoform 4 [Canis familiaris].
Length = 556
Score = 367 bits (943), Expect = e-102
Identities = 201/311 (64%), Positives = 210/311 (67%)
Frame = +2
Query: 152 SPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAGSSSSPRXXXXXXXXXXXXXXXXXXX 331
SPEA LVNEDVKRTVDLSSHLAKVTAEVVLAH G S+ R
Sbjct: 25 SPEAPLLVNEDVKRTVDLSSHLAKVTAEVVLAHPGGGSTARAASFLLALEPELEARLAHL 84
Query: 332 GVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTLPVALDPGAKISVTVETVYTHVLQPYPT 511
GVQV PYPT
Sbjct: 85 GVQVS---------------------------------------------------PYPT 93
Query: 512 QITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 691
QITQSEKQFVVFEGNHYFYSPYPTK+Q+MRVKLASRNVESYTKLGNPTRSEDLLDYGPFR
Sbjct: 94 QITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 153
Query: 692 DVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 871
D+P YSQDTFKVH ENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY
Sbjct: 154 DIPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 213
Query: 872 DYQRQPDSGISSIRSFKPSFLLLPRMFITGMRLAMFPPTTLLILDDSVKMEIRPPFPLFG 1051
DYQRQPDSGI+SIRSFK + + + LLILDDSV+MEIRP FPLFG
Sbjct: 214 DYQRQPDSGIASIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG 273
Query: 1052 GWKTHYIVG*N 1084
GWKTHYIVG N
Sbjct: 274 GWKTHYIVGYN 284
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,233,206
Number of extensions: 1012814
Number of successful extensions: 2746
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2740
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002290
(1084 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002941.1| dolichyl-diphosphooligosaccharide--protein glyc... 459 e-129
>ref|NP_002941.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit 1 precursor [Homo sapiens].
Length = 607
Score = 459 bits (1182), Expect = e-129
Identities = 239/311 (76%), Positives = 247/311 (79%)
Frame = +2
Query: 152 SPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAGSSSSPRXXXXXXXXXXXXXXXXXXX 331
S EA PL+NEDVKRTVDLSSHLAKVTAEVVLAH G S+ R
Sbjct: 25 SSEAPPLINEDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHL 84
Query: 332 GVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTLPVALDPGAKISVTVETVYTHVLQPYPT 511
GVQVKG TKIKGKSGRFFTV LPVALDPGAKISV VETVYTHVL PYPT
Sbjct: 85 GVQVKGEDEEENNLEVRETKIKGKSGRFFTVKLPVALDPGAKISVIVETVYTHVLHPYPT 144
Query: 512 QITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 691
QITQSEKQFVVFEGNHYFYSPYPTK+Q+MRVKLASRNVESYTKLGNPTRSEDLLDYGPFR
Sbjct: 145 QITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 204
Query: 692 DVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 871
DVP YSQDTFKVH ENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY
Sbjct: 205 DVPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 264
Query: 872 DYQRQPDSGISSIRSFKPSFLLLPRMFITGMRLAMFPPTTLLILDDSVKMEIRPPFPLFG 1051
DYQRQPDSGISSIRSFK + + + LLILDDSV+MEIRP FPLFG
Sbjct: 265 DYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG 324
Query: 1052 GWKTHYIVG*N 1084
GWKTHYIVG N
Sbjct: 325 GWKTHYIVGYN 335
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,473,634
Number of extensions: 989660
Number of successful extensions: 2785
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2777
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002290
(1084 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598694.3| dolichyl-diphosphooligosaccharide--protein glyc... 454 e-128
>ref|NP_598694.3| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit 1 [Mus musculus].
Length = 608
Score = 454 bits (1168), Expect = e-128
Identities = 237/336 (70%), Positives = 251/336 (74%)
Frame = +2
Query: 77 MEAPAVCXXXXXXXXWAXXXXXXXXSPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAG 256
ME+P A S EA PLVNEDVKRTVDLSSHLAKVTAEVVL H G
Sbjct: 1 MESPVALLLLLLLCLGALAPTPGSASSEAPPLVNEDVKRTVDLSSHLAKVTAEVVLVHPG 60
Query: 257 SSSSPRXXXXXXXXXXXXXXXXXXXGVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTLPV 436
S+ R GVQ+KG TKIKGKSGRFFTV LPV
Sbjct: 61 GGSTSRASSFVLALEPELESRLAHLGVQIKGEDEEDNNLEVRETKIKGKSGRFFTVKLPV 120
Query: 437 ALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLAS 616
ALDPG+KISV VETVYTHVL PYPTQITQSEKQFVVFEGNHYFYSPYPTK+Q+MRVKLAS
Sbjct: 121 ALDPGSKISVVVETVYTHVLHPYPTQITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLAS 180
Query: 617 RNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHW 796
RNVESYTKLGNP+RSED+LDYGPF+D+P YSQDTFKVH ENNSPFLTITSMTRVIEVSHW
Sbjct: 181 RNVESYTKLGNPSRSEDVLDYGPFKDIPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHW 240
Query: 797 GNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKPSFLLLPRMFITGMRLAM 976
GNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFK + +
Sbjct: 241 GNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGN 300
Query: 977 FPPTTLLILDDSVKMEIRPPFPLFGGWKTHYIVG*N 1084
+ LLILDDSV+MEIRP FPLFGGWKTHYIVG N
Sbjct: 301 VSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYN 336
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,663,122
Number of extensions: 828265
Number of successful extensions: 2174
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2167
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002290
(1084 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999498.1| dolichyl-diphosphooligosaccharide--protein glyc... 501 e-142
Alignment gi|XP_003132457.1| PREDICTED: dolichyl-diphosphooligosaccharide... 328 3e-90
Alignment gi|XP_003132455.2| PREDICTED: dolichyl-diphosphooligosaccharide... 62 1e-19
>ref|NP_999498.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit 1 [Sus scrofa].
Length = 608
Score = 501 bits (1291), Expect = e-142
Identities = 262/336 (77%), Positives = 266/336 (79%)
Frame = +2
Query: 77 MEAPAVCXXXXXXXXWAXXXXXXXXSPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAG 256
MEAPAVC WA SPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAG
Sbjct: 1 MEAPAVCLLPLLLLLWAWAPAPGRASPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAG 60
Query: 257 SSSSPRXXXXXXXXXXXXXXXXXXXGVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTLPV 436
SSSSPR GVQVKG TKIKGK GRFFTVTLPV
Sbjct: 61 SSSSPRAASFLLALEPELEARLAHLGVQVKGEDEEENNLEVRETKIKGKRGRFFTVTLPV 120
Query: 437 ALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLAS 616
ALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLAS
Sbjct: 121 ALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLAS 180
Query: 617 RNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHW 796
RNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHW
Sbjct: 181 RNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHW 240
Query: 797 GNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKPSFLLLPRMFITGMRLAM 976
GNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFK + +
Sbjct: 241 GNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGN 300
Query: 977 FPPTTLLILDDSVKMEIRPPFPLFGGWKTHYIVG*N 1084
+ LLILDDSV+MEIRP FPLFGGWKTHYIVG N
Sbjct: 301 VSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYN 336
>ref|XP_003132457.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein
glycosyltransferase subunit 1-like [Sus scrofa].
Length = 293
Score = 328 bits (841), Expect = 3e-90
Identities = 175/237 (73%), Positives = 175/237 (73%)
Frame = +2
Query: 2 VNCVVXXXXXXXXXXXXXXXSSIPAMEAPAVCXXXXXXXXWAXXXXXXXXSPEALPLVNE 181
VNCVV SSIPAMEAPAVC WA SPEALPLVNE
Sbjct: 2 VNCVVAEAGRRGGLAGGLRLSSIPAMEAPAVCLLPLLLLLWAWAPAPGRASPEALPLVNE 61
Query: 182 DVKRTVDLSSHLAKVTAEVVLAHAGSSSSPRXXXXXXXXXXXXXXXXXXXGVQVKGXXXX 361
DVKRTVDLSSHLAKVTAEVVLAHAGSSSSPR GVQVKG
Sbjct: 62 DVKRTVDLSSHLAKVTAEVVLAHAGSSSSPRAASFLLALEPELEARLAHLGVQVKGEDEE 121
Query: 362 XXXXXXXXTKIKGKSGRFFTVTLPVALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFV 541
TKIKGKSGRFFTVTLPVALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFV
Sbjct: 122 ENNLEVRETKIKGKSGRFFTVTLPVALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFV 181
Query: 542 VFEGNHYFYSPYPTKSQSMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQ 712
VFEGNHYFYSPYPTKSQSMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQ
Sbjct: 182 VFEGNHYFYSPYPTKSQSMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQ 238
>ref|XP_003132455.2| PREDICTED: dolichyl-diphosphooligosaccharide--protein
glycosyltransferase subunit 1-like [Sus scrofa].
Length = 596
Score = 61.6 bits (148), Expect(2) = 1e-19
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +2
Query: 992 LLILDDSVKMEIRPPFPLFGGWKTHYIVG*N 1084
LLILDDSV+MEIRP FPLFGGWKTHYIVG N
Sbjct: 294 LLILDDSVEMEIRPRFPLFGGWKTHYIVGYN 324
Score = 52.8 bits (125), Expect(2) = 1e-19
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = +1
Query: 904 LHPFF*TILPAAAQDVYYRDEIGNVSTNH 990
+H F TILPAAAQDVYYRDEIGNVST+H
Sbjct: 265 VHSFLQTILPAAAQDVYYRDEIGNVSTSH 293
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,685,872
Number of extensions: 650502
Number of successful extensions: 1784
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1780
Number of HSP's successfully gapped: 4
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002290
(1084 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 615 e-173
>Sscrofa_Chr13
|| Length = 218635234
Score = 615 bits (310), Expect = e-173
Identities = 310/310 (100%)
Strand = Plus / Minus
Query: 404 agcgggagattcttcacagtcacactcccagttgctcttgatcctggggccaagatttca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79284722 agcgggagattcttcacagtcacactcccagttgctcttgatcctggggccaagatttca 79284663
Query: 464 gtcactgtggaaaccgtttacacccacgtgcttcagccatatccaacacagatcacccaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79284662 gtcactgtggaaaccgtttacacccacgtgcttcagccatatccaacacagatcacccaa 79284603
Query: 524 tcagagaaacagtttgtggttttcgaggggaaccattatttctattctccctacccaacc 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79284602 tcagagaaacagtttgtggttttcgaggggaaccattatttctattctccctacccaacc 79284543
Query: 584 aagtcacaaagcatgcgtgtgaagctcgcctcccgaaacgtggaaagctacaccaagctg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79284542 aagtcacaaagcatgcgtgtgaagctcgcctcccgaaacgtggaaagctacaccaagctg 79284483
Query: 644 gggaaccccacgcgctctgaggacctcctggattacgggcctttccgagatgtccctccc 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79284482 gggaaccccacgcgctctgaggacctcctggattacgggcctttccgagatgtccctccc 79284423
Query: 704 tatagtcagg 713
||||||||||
Sbjct: 79284422 tatagtcagg 79284413
Score = 442 bits (223), Expect = e-121
Identities = 269/292 (92%)
Strand = Plus / Minus
Query: 53 ctgaggctcagctccatcccggccatggaggcgcccgcagtctgcctgctaccgctgctg 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79289585 ctgaggctcagctccatcccggccatggaggcgcccgcagtctgcctgctaccgctgctg 79289526
Query: 113 ctgttgctctgggcctnnnnnnnnnnnnnnnnnnnnnnntcccccgaggcgctgccgctg 172
|||||||||||||||| |||||||||||||||||||||
Sbjct: 79289525 ctgttgctctgggcctgggccccggcgccgggccgcgcctcccccgaggcgctgccgctg 79289466
Query: 173 gtcaacgaggacgtgaagcgcacggtggatctgagcagccacctggctaaggtgacggcc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79289465 gtcaacgaggacgtgaagcgcacggtggatctgagcagccacctggctaaggtgacggcc 79289406
Query: 233 gaggtggtcctggcgcacgcgggcagcagctcctcgccccgcgccgcctccttcctacta 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79289405 gaggtggtcctggcgcacgcgggcagcagctcctcgccccgcgccgcctccttcctacta 79289346
Query: 293 gccctggagcccgagctggaggcccgcttggcgcacctcggcgtgcaggtga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79289345 gccctggagcccgagctggaggcccgcttggcgcacctcggcgtgcaggtga 79289294
Score = 420 bits (212), Expect = e-115
Identities = 212/212 (100%)
Strand = Plus / Minus
Query: 710 caggatacctttaaagtacattccgagaacaacagccccttcctgaccatcaccagcatg 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79280312 caggatacctttaaagtacattccgagaacaacagccccttcctgaccatcaccagcatg 79280253
Query: 770 acacgagtcattgaagtctcccactggggtaatattgctgtggaagaaaatgtggacctg 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79280252 acacgagtcattgaagtctcccactggggtaatattgctgtggaagaaaatgtggacctg 79280193
Query: 830 aagcacacgggggctgtgctgaaggggccgttttcccgctatgactatcagagacagcca 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79280192 aagcacacgggggctgtgctgaaggggccgttttcccgctatgactatcagagacagcca 79280133
Query: 890 gacagtgggatctcctccatccgttcttttaa 921
||||||||||||||||||||||||||||||||
Sbjct: 79280132 gacagtgggatctcctccatccgttcttttaa 79280101
Score = 276 bits (139), Expect = 2e-71
Identities = 155/159 (97%), Gaps = 1/159 (0%)
Strand = Plus / Minus
Query: 922 accatccttcctgctgctgcccaggatgtttattaccgggatgagattggcaatgtttcc 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79278438 accatccttcctgctgctgcccaggatgtttattaccgggatgagattggcaatgtttcc 79278379
Query: 982 accaaccacccttcttattttggacgattctgtaaagatggaaatccggcctcccttccc 1041
|||| ||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 79278378 accagccacc-ttcttattttggacgattctgtagagatggaaatccggcctcgcttccc 79278320
Query: 1042 tctttttggcgggtggaagacccactacatcgttggcta 1080
|||||||||||||||||||||||||||||||||||||||
Sbjct: 79278319 tctttttggcgggtggaagacccactacatcgttggcta 79278281
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 338 caggtgaagggagaggatgaggaagagaacaatctggaagtgagagaaaccaaaattaag 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79285731 caggtgaagggagaggatgaggaagagaacaatctggaagtgagagaaaccaaaattaag 79285672
Query: 398 ggtaaaag 405
||||||||
Sbjct: 79285671 ggtaaaag 79285664
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,155,907
Number of extensions: 199
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 6
Length of query: 1084
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1063
Effective length of database: 2,808,413,156
Effective search space: 2985343184828
Effective search space used: 2985343184828
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)