Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002292
(2170 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076074.1| dolichyl-diphosphooligosaccharide--protein g... 1035 0.0
Alignment gi|NP_001095991.1| hypothetical protein LOC539818 [Bos taurus]. 953 0.0
>ref|NP_001076074.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit 1 [Bos taurus].
Length = 609
Score = 1035 bits (2676), Expect = 0.0
Identities = 526/583 (90%), Positives = 539/583 (92%)
Frame = +1
Query: 82 SPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAGSSSSPRXXXXXXXXXXXXXXXXXXX 261
S +A PLVNEDVKRTVDLSSHLAKVTAEVVLAHAGS SSPR
Sbjct: 27 SSDAPPLVNEDVKRTVDLSSHLAKVTAEVVLAHAGSGSSPRAASFLLALEPELEARLAHL 86
Query: 262 GVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTLPVALDPGAKISVTVETVYTHVLQPYPT 441
GVQVKG T IKG+SGRFFTV LPVALDPGAKISV VE VYTHVLQPYPT
Sbjct: 87 GVQVKGEDEEENNLEVRETSIKGQSGRFFTVKLPVALDPGAKISVIVEAVYTHVLQPYPT 146
Query: 442 QITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 621
QITQSEKQFVVFEGNHYFYSPYPTK+Q+MRVKLASRNVESYTKLGNPTRSEDLLDYGPFR
Sbjct: 147 QITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 206
Query: 622 DVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 801
D+P YSQDTFKVHSENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY
Sbjct: 207 DIPAYSQDTFKVHSENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 266
Query: 802 DYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG 981
DYQRQPDSG+SS+RSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG
Sbjct: 267 DYQRQPDSGVSSVRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG 326
Query: 982 GWKTHYIVGYNLPSYEYLYNLGDQYALKMRLVDHVFDEQVIDSLTVKIILPEGAKNIQVD 1161
GWKTHYIVGYNLPSYEYLYNLGDQYALKMRLVDHVFDEQVIDSLTVKIILPEGAKNIQVD
Sbjct: 327 GWKTHYIVGYNLPSYEYLYNLGDQYALKMRLVDHVFDEQVIDSLTVKIILPEGAKNIQVD 386
Query: 1162 SPYEISRAPDELHYTYLDTFGRPVIVAHKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVA 1341
SPYEISR PDELHYTYLDTFGRPVIVAHK+NLVEQHIQDIVVHYTFNKVLMLQEPLLVVA
Sbjct: 387 SPYEISRGPDELHYTYLDTFGRPVIVAHKENLVEQHIQDIVVHYTFNKVLMLQEPLLVVA 446
Query: 1342 AFYILFFTVIVYVRLDFSITKDPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINRYK 1521
FYILFFTVIVYVRLDFSITKDPAAEARMKVACITEQVLTLVNKR+GLYRHFDET+NRYK
Sbjct: 447 TFYILFFTVIVYVRLDFSITKDPAAEARMKVACITEQVLTLVNKRLGLYRHFDETVNRYK 506
Query: 1522 QSRDVSTLNSGKKSLELEHKALTSEVALLQSRLKTEGSDLCDKVSEMQKLDAQVKELVLK 1701
QSRDVSTLNSGKKSLE EHKALTS +ALLQSRLKTEGSDLCDKVSEMQ+LDAQVKELVLK
Sbjct: 507 QSRDVSTLNSGKKSLETEHKALTSGLALLQSRLKTEGSDLCDKVSEMQRLDAQVKELVLK 566
Query: 1702 SAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKIDHILDAL 1830
+AVEAERLVAGKLKKDTYIENEKLISGKRQELV KIDHILDAL
Sbjct: 567 AAVEAERLVAGKLKKDTYIENEKLISGKRQELVGKIDHILDAL 609
>ref|NP_001095991.1| hypothetical protein LOC539818 [Bos taurus].
Length = 608
Score = 953 bits (2464), Expect = 0.0
Identities = 483/608 (79%), Positives = 526/608 (86%)
Frame = +1
Query: 7 MEAPAVCXXXXXXXXWAXXXXXXXXSPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAG 186
MEAPAV A S EALPLVNE+V+RTVDLSSHLAKVTAEVVLAH G
Sbjct: 1 MEAPAVHLLPLLLLFAAWAPEPGSTSAEALPLVNEEVRRTVDLSSHLAKVTAEVVLAHTG 60
Query: 187 SSSSPRXXXXXXXXXXXXXXXXXXXGVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTLPV 366
S SSPR GVQV G TKI GKSGRFFTV LPV
Sbjct: 61 SDSSPRAASFLVALEPEFEAQLAHLGVQVTGVDEEANSLEVQETKINGKSGRFFTVQLPV 120
Query: 367 ALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLAS 546
ALDPGA++SV VE VYTH +QPYP QITQS+KQFVVFEGN+YFYSPYPTK+Q+M VKLAS
Sbjct: 121 ALDPGAEVSVVVEAVYTHAIQPYPIQITQSQKQFVVFEGNNYFYSPYPTKTQTMHVKLAS 180
Query: 547 RNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHW 726
NVESYTKLGNP R E+LLDYGPF D+P YSQD+FKVHSENNSPFLT+TSMTRVIEVSHW
Sbjct: 181 PNVESYTKLGNPMRHENLLDYGPFHDIPAYSQDSFKVHSENNSPFLTVTSMTRVIEVSHW 240
Query: 727 GNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGN 906
GNIAVEENV+LKHTGAVLKG FSRYDY + DSGISSIRSFKTILPA+AQDVYYRDEIG+
Sbjct: 241 GNIAVEENVNLKHTGAVLKGSFSRYDYDKWIDSGISSIRSFKTILPASAQDVYYRDEIGS 300
Query: 907 VSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMRLVDHV 1086
+ T HLLILDDSVEME++PRFPLFGGWKTHYI+GYNLPSYEYLYNLGDQY LKMRLVDHV
Sbjct: 301 IYTRHLLILDDSVEMEMKPRFPLFGGWKTHYIIGYNLPSYEYLYNLGDQYVLKMRLVDHV 360
Query: 1087 FDEQVIDSLTVKIILPEGAKNIQVDSPYEISRAPDELHYTYLDTFGRPVIVAHKKNLVEQ 1266
FD+QVIDSLTVKIILPEGA+NIQVDSPYEISRAPD+L+YTYLDTFGRPVIVAHKKNLVEQ
Sbjct: 361 FDKQVIDSLTVKIILPEGARNIQVDSPYEISRAPDKLYYTYLDTFGRPVIVAHKKNLVEQ 420
Query: 1267 HIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIVYVRLDFSITKDPAAEARMKVACIT 1446
HIQDI+VHYTF+KVLMLQEPLL+VA F ILFFTV++YVRLD SITKDPAAEARMKVACI
Sbjct: 421 HIQDIMVHYTFSKVLMLQEPLLLVATFSILFFTVVIYVRLDLSITKDPAAEARMKVACII 480
Query: 1447 EQVLTLVNKRIGLYRHFDETINRYKQSRDVSTLNSGKKSLELEHKALTSEVALLQSRLKT 1626
EQVLTLV+KR+GLY HF++T+NRYKQSRDVS LNSGKKSLE+EHKALTSEVALLQ+RLKT
Sbjct: 481 EQVLTLVSKRLGLYHHFNKTVNRYKQSRDVSVLNSGKKSLEMEHKALTSEVALLQARLKT 540
Query: 1627 EGSDLCDKVSEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTYIENEKLISGKRQELVTK 1806
EGS+LCDKVSEMQKLD QVK+LVLKSAVEAE LVAGKLKKD YI+N+KLISGKRQELV+K
Sbjct: 541 EGSNLCDKVSEMQKLDTQVKQLVLKSAVEAEWLVAGKLKKDMYIQNKKLISGKRQELVSK 600
Query: 1807 IDHILDAL 1830
I+HILD L
Sbjct: 601 IEHILDTL 608
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 78,495,459
Number of extensions: 2124435
Number of successful extensions: 7031
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7018
Number of HSP's successfully gapped: 2
Length of query: 723
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 613
Effective length of database: 14,041,694
Effective search space: 8607558422
Effective search space used: 8607558422
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002292
(2170 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848830.1| PREDICTED: similar to Dolichyl-diphosphooligosa... 1038 0.0
Alignment gi|XP_857264.1| PREDICTED: similar to Dolichyl-diphosphooligosa... 946 0.0
Alignment gi|XP_533722.2| PREDICTED: similar to Dolichyl-diphosphooligosa... 498 e-141
>ref|XP_848830.1| PREDICTED: similar to Dolichyl-diphosphooligosaccharide--protein
glycosyltransferase 67 kDa subunit precursor (Ribophorin
I) (RPN-I) isoform 3 [Canis familiaris].
Length = 607
Score = 1038 bits (2684), Expect = 0.0
Identities = 530/583 (90%), Positives = 539/583 (92%)
Frame = +1
Query: 82 SPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAGSSSSPRXXXXXXXXXXXXXXXXXXX 261
SPEA LVNEDVKRTVDLSSHLAKVTAEVVLAH G S+ R
Sbjct: 25 SPEAPLLVNEDVKRTVDLSSHLAKVTAEVVLAHPGGGSTARAASFLLALEPELEARLAHL 84
Query: 262 GVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTLPVALDPGAKISVTVETVYTHVLQPYPT 441
GVQVKG TKIKGKSGRFFTV LPVALDPGAK+SV VETVYTHVLQPYPT
Sbjct: 85 GVQVKGEDEEENNLEVRETKIKGKSGRFFTVKLPVALDPGAKVSVVVETVYTHVLQPYPT 144
Query: 442 QITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 621
QITQSEKQFVVFEGNHYFYSPYPTK+Q+MRVKLASRNVESYTKLGNPTRSEDLLDYGPFR
Sbjct: 145 QITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 204
Query: 622 DVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 801
D+P YSQDTFKVH ENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY
Sbjct: 205 DIPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 264
Query: 802 DYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG 981
DYQRQPDSGI+SIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG
Sbjct: 265 DYQRQPDSGIASIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG 324
Query: 982 GWKTHYIVGYNLPSYEYLYNLGDQYALKMRLVDHVFDEQVIDSLTVKIILPEGAKNIQVD 1161
GWKTHYIVGYNLPSYEYLYNLGDQYALKMR VDHVFDEQVIDSLTVKIILPEGAKNIQVD
Sbjct: 325 GWKTHYIVGYNLPSYEYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIQVD 384
Query: 1162 SPYEISRAPDELHYTYLDTFGRPVIVAHKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVA 1341
SPYEISRAPDELHYTYLDTFGRPVIVA+KKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVA
Sbjct: 385 SPYEISRAPDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVA 444
Query: 1342 AFYILFFTVIVYVRLDFSITKDPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINRYK 1521
AFYILFFTVI+YVRLDFSITKDPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINRYK
Sbjct: 445 AFYILFFTVIIYVRLDFSITKDPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINRYK 504
Query: 1522 QSRDVSTLNSGKKSLELEHKALTSEVALLQSRLKTEGSDLCDKVSEMQKLDAQVKELVLK 1701
QSRDVSTLNSGKKSLE EHKALTSE+A LQSRLKTEGSDLCDKVSEMQKLDAQVKELVLK
Sbjct: 505 QSRDVSTLNSGKKSLETEHKALTSEIASLQSRLKTEGSDLCDKVSEMQKLDAQVKELVLK 564
Query: 1702 SAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKIDHILDAL 1830
SAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKIDHILDAL
Sbjct: 565 SAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKIDHILDAL 607
>ref|XP_857264.1| PREDICTED: similar to Dolichyl-diphosphooligosaccharide--protein
glycosyltransferase 67 kDa subunit precursor (Ribophorin
I) (RPN-I) isoform 4 [Canis familiaris].
Length = 556
Score = 946 bits (2445), Expect = 0.0
Identities = 493/583 (84%), Positives = 501/583 (85%)
Frame = +1
Query: 82 SPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAGSSSSPRXXXXXXXXXXXXXXXXXXX 261
SPEA LVNEDVKRTVDLSSHLAKVTAEVVLAH G S+ R
Sbjct: 25 SPEAPLLVNEDVKRTVDLSSHLAKVTAEVVLAHPGGGSTARAASFLLALEPELEARLAHL 84
Query: 262 GVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTLPVALDPGAKISVTVETVYTHVLQPYPT 441
GVQV PYPT
Sbjct: 85 GVQVS---------------------------------------------------PYPT 93
Query: 442 QITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 621
QITQSEKQFVVFEGNHYFYSPYPTK+Q+MRVKLASRNVESYTKLGNPTRSEDLLDYGPFR
Sbjct: 94 QITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 153
Query: 622 DVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 801
D+P YSQDTFKVH ENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY
Sbjct: 154 DIPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 213
Query: 802 DYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG 981
DYQRQPDSGI+SIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG
Sbjct: 214 DYQRQPDSGIASIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG 273
Query: 982 GWKTHYIVGYNLPSYEYLYNLGDQYALKMRLVDHVFDEQVIDSLTVKIILPEGAKNIQVD 1161
GWKTHYIVGYNLPSYEYLYNLGDQYALKMR VDHVFDEQVIDSLTVKIILPEGAKNIQVD
Sbjct: 274 GWKTHYIVGYNLPSYEYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIQVD 333
Query: 1162 SPYEISRAPDELHYTYLDTFGRPVIVAHKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVA 1341
SPYEISRAPDELHYTYLDTFGRPVIVA+KKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVA
Sbjct: 334 SPYEISRAPDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVA 393
Query: 1342 AFYILFFTVIVYVRLDFSITKDPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINRYK 1521
AFYILFFTVI+YVRLDFSITKDPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINRYK
Sbjct: 394 AFYILFFTVIIYVRLDFSITKDPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINRYK 453
Query: 1522 QSRDVSTLNSGKKSLELEHKALTSEVALLQSRLKTEGSDLCDKVSEMQKLDAQVKELVLK 1701
QSRDVSTLNSGKKSLE EHKALTSE+A LQSRLKTEGSDLCDKVSEMQKLDAQVKELVLK
Sbjct: 454 QSRDVSTLNSGKKSLETEHKALTSEIASLQSRLKTEGSDLCDKVSEMQKLDAQVKELVLK 513
Query: 1702 SAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKIDHILDAL 1830
SAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKIDHILDAL
Sbjct: 514 SAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKIDHILDAL 556
>ref|XP_533722.2| PREDICTED: similar to Dolichyl-diphosphooligosaccharide--protein
glycosyltransferase 67 kDa subunit precursor (Ribophorin
I) (RPN-I) isoform 1 [Canis familiaris].
Length = 271
Score = 498 bits (1283), Expect = e-141
Identities = 256/262 (97%), Positives = 259/262 (98%)
Frame = +1
Query: 1045 GDQYALKMRLVDHVFDEQVIDSLTVKIILPEGAKNIQVDSPYEISRAPDELHYTYLDTFG 1224
GDQYALKMR VDHVFDEQVIDSLTVKIILPEGAKNIQVDSPYEISRAPDELHYTYLDTFG
Sbjct: 10 GDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIQVDSPYEISRAPDELHYTYLDTFG 69
Query: 1225 RPVIVAHKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIVYVRLDFSITK 1404
RPVIVA+KKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVI+YVRLDFSITK
Sbjct: 70 RPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITK 129
Query: 1405 DPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINRYKQSRDVSTLNSGKKSLELEHKA 1584
DPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINRYKQSRDVSTLNSGKKSLE EHKA
Sbjct: 130 DPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINRYKQSRDVSTLNSGKKSLETEHKA 189
Query: 1585 LTSEVALLQSRLKTEGSDLCDKVSEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTYIEN 1764
LTSE+A LQSRLKTEGSDLCDKVSEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTYIEN
Sbjct: 190 LTSEIASLQSRLKTEGSDLCDKVSEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTYIEN 249
Query: 1765 EKLISGKRQELVTKIDHILDAL 1830
EKLISGKRQELVTKIDHILDAL
Sbjct: 250 EKLISGKRQELVTKIDHILDAL 271
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 81,801,080
Number of extensions: 2169810
Number of successful extensions: 6901
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6878
Number of HSP's successfully gapped: 4
Length of query: 723
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 613
Effective length of database: 15,207,544
Effective search space: 9322224472
Effective search space used: 9322224472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002292
(2170 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002941.1| dolichyl-diphosphooligosaccharide--protein glyc... 1037 0.0
>ref|NP_002941.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit 1 precursor [Homo sapiens].
Length = 607
Score = 1037 bits (2681), Expect = 0.0
Identities = 527/583 (90%), Positives = 539/583 (92%)
Frame = +1
Query: 82 SPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAGSSSSPRXXXXXXXXXXXXXXXXXXX 261
S EA PL+NEDVKRTVDLSSHLAKVTAEVVLAH G S+ R
Sbjct: 25 SSEAPPLINEDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHL 84
Query: 262 GVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTLPVALDPGAKISVTVETVYTHVLQPYPT 441
GVQVKG TKIKGKSGRFFTV LPVALDPGAKISV VETVYTHVL PYPT
Sbjct: 85 GVQVKGEDEEENNLEVRETKIKGKSGRFFTVKLPVALDPGAKISVIVETVYTHVLHPYPT 144
Query: 442 QITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 621
QITQSEKQFVVFEGNHYFYSPYPTK+Q+MRVKLASRNVESYTKLGNPTRSEDLLDYGPFR
Sbjct: 145 QITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFR 204
Query: 622 DVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 801
DVP YSQDTFKVH ENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY
Sbjct: 205 DVPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRY 264
Query: 802 DYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG 981
DYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG
Sbjct: 265 DYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFG 324
Query: 982 GWKTHYIVGYNLPSYEYLYNLGDQYALKMRLVDHVFDEQVIDSLTVKIILPEGAKNIQVD 1161
GWKTHYIVGYNLPSYEYLYNLGDQYALKMR VDHVFDEQVIDSLTVKIILPEGAKNI++D
Sbjct: 325 GWKTHYIVGYNLPSYEYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEID 384
Query: 1162 SPYEISRAPDELHYTYLDTFGRPVIVAHKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVA 1341
SPYEISRAPDELHYTYLDTFGRPVIVA+KKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVA
Sbjct: 385 SPYEISRAPDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVA 444
Query: 1342 AFYILFFTVIVYVRLDFSITKDPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINRYK 1521
AFYILFFTVI+YVRLDFSITKDPAAEARMKVACITEQVLTLVNKRIGLYRHFDET+NRYK
Sbjct: 445 AFYILFFTVIIYVRLDFSITKDPAAEARMKVACITEQVLTLVNKRIGLYRHFDETVNRYK 504
Query: 1522 QSRDVSTLNSGKKSLELEHKALTSEVALLQSRLKTEGSDLCDKVSEMQKLDAQVKELVLK 1701
QSRD+STLNSGKKSLE EHKALTSE+ALLQSRLKTEGSDLCD+VSEMQKLDAQVKELVLK
Sbjct: 505 QSRDISTLNSGKKSLETEHKALTSEIALLQSRLKTEGSDLCDRVSEMQKLDAQVKELVLK 564
Query: 1702 SAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKIDHILDAL 1830
SAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKIDHILDAL
Sbjct: 565 SAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKIDHILDAL 607
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 80,308,579
Number of extensions: 2131212
Number of successful extensions: 6858
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6848
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 613
Effective length of database: 14,671,124
Effective search space: 8993399012
Effective search space used: 8993399012
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002292
(2170 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598694.3| dolichyl-diphosphooligosaccharide--protein glyc... 1026 0.0
>ref|NP_598694.3| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit 1 [Mus musculus].
Length = 608
Score = 1026 bits (2652), Expect = 0.0
Identities = 521/608 (85%), Positives = 542/608 (89%)
Frame = +1
Query: 7 MEAPAVCXXXXXXXXWAXXXXXXXXSPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAG 186
ME+P A S EA PLVNEDVKRTVDLSSHLAKVTAEVVL H G
Sbjct: 1 MESPVALLLLLLLCLGALAPTPGSASSEAPPLVNEDVKRTVDLSSHLAKVTAEVVLVHPG 60
Query: 187 SSSSPRXXXXXXXXXXXXXXXXXXXGVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTLPV 366
S+ R GVQ+KG TKIKGKSGRFFTV LPV
Sbjct: 61 GGSTSRASSFVLALEPELESRLAHLGVQIKGEDEEDNNLEVRETKIKGKSGRFFTVKLPV 120
Query: 367 ALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLAS 546
ALDPG+KISV VETVYTHVL PYPTQITQSEKQFVVFEGNHYFYSPYPTK+Q+MRVKLAS
Sbjct: 121 ALDPGSKISVVVETVYTHVLHPYPTQITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLAS 180
Query: 547 RNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHW 726
RNVESYTKLGNP+RSED+LDYGPF+D+P YSQDTFKVH ENNSPFLTITSMTRVIEVSHW
Sbjct: 181 RNVESYTKLGNPSRSEDVLDYGPFKDIPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHW 240
Query: 727 GNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGN 906
GNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGN
Sbjct: 241 GNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGN 300
Query: 907 VSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMRLVDHV 1086
VSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMR VDHV
Sbjct: 301 VSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMRFVDHV 360
Query: 1087 FDEQVIDSLTVKIILPEGAKNIQVDSPYEISRAPDELHYTYLDTFGRPVIVAHKKNLVEQ 1266
FDEQVIDSLTVKIILPEGAKNIQVDSPY+ISRAPDELHYTYLDTFGRPVIVA+KKNLVEQ
Sbjct: 361 FDEQVIDSLTVKIILPEGAKNIQVDSPYDISRAPDELHYTYLDTFGRPVIVAYKKNLVEQ 420
Query: 1267 HIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIVYVRLDFSITKDPAAEARMKVACIT 1446
HIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVI+YVRLDFSITKDPAAEARMKVACIT
Sbjct: 421 HIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPAAEARMKVACIT 480
Query: 1447 EQVLTLVNKRIGLYRHFDETINRYKQSRDVSTLNSGKKSLELEHKALTSEVALLQSRLKT 1626
EQVLTLVNKR+GLYRHFDET+NRYKQSRD+STLNSGKKSLE EHKA+TSE+A+LQSRLKT
Sbjct: 481 EQVLTLVNKRLGLYRHFDETVNRYKQSRDISTLNSGKKSLETEHKAVTSEIAVLQSRLKT 540
Query: 1627 EGSDLCDKVSEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTYIENEKLISGKRQELVTK 1806
EGSDLCD+VSEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTY+ENEKL SGKRQELVTK
Sbjct: 541 EGSDLCDRVSEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTYLENEKLSSGKRQELVTK 600
Query: 1807 IDHILDAL 1830
IDHILDAL
Sbjct: 601 IDHILDAL 608
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 68,180,343
Number of extensions: 1799460
Number of successful extensions: 5752
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5735
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 614
Effective length of database: 12,343,635
Effective search space: 7578991890
Effective search space used: 7578991890
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002292
(2170 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999498.1| dolichyl-diphosphooligosaccharide--protein glyc... 1089 0.0
Alignment gi|XP_003132455.2| PREDICTED: dolichyl-diphosphooligosaccharide... 642 0.0
Alignment gi|XP_003132457.1| PREDICTED: dolichyl-diphosphooligosaccharide... 319 4e-87
>ref|NP_999498.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit 1 [Sus scrofa].
Length = 608
Score = 1089 bits (2816), Expect = 0.0
Identities = 560/608 (92%), Positives = 560/608 (92%)
Frame = +1
Query: 7 MEAPAVCXXXXXXXXWAXXXXXXXXSPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAG 186
MEAPAVC WA SPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAG
Sbjct: 1 MEAPAVCLLPLLLLLWAWAPAPGRASPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAHAG 60
Query: 187 SSSSPRXXXXXXXXXXXXXXXXXXXGVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTLPV 366
SSSSPR GVQVKG TKIKGK GRFFTVTLPV
Sbjct: 61 SSSSPRAASFLLALEPELEARLAHLGVQVKGEDEEENNLEVRETKIKGKRGRFFTVTLPV 120
Query: 367 ALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLAS 546
ALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLAS
Sbjct: 121 ALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKLAS 180
Query: 547 RNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHW 726
RNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHW
Sbjct: 181 RNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQDTFKVHSENNSPFLTITSMTRVIEVSHW 240
Query: 727 GNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGN 906
GNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGN
Sbjct: 241 GNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGN 300
Query: 907 VSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMRLVDHV 1086
VSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMRLVDHV
Sbjct: 301 VSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMRLVDHV 360
Query: 1087 FDEQVIDSLTVKIILPEGAKNIQVDSPYEISRAPDELHYTYLDTFGRPVIVAHKKNLVEQ 1266
FDEQVIDSLTVKIILPEGAKNIQVDSPYEISRAPDELHYTYLDTFGRPVIVAHKKNLVEQ
Sbjct: 361 FDEQVIDSLTVKIILPEGAKNIQVDSPYEISRAPDELHYTYLDTFGRPVIVAHKKNLVEQ 420
Query: 1267 HIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIVYVRLDFSITKDPAAEARMKVACIT 1446
HIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIVYVRLDFSITKDPAAEARMKVACIT
Sbjct: 421 HIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIVYVRLDFSITKDPAAEARMKVACIT 480
Query: 1447 EQVLTLVNKRIGLYRHFDETINRYKQSRDVSTLNSGKKSLELEHKALTSEVALLQSRLKT 1626
EQVLTLVNKRIGLYRHFDETINRYKQSRDVSTLNSGKKSLELEHKALTSEVALLQSRLKT
Sbjct: 481 EQVLTLVNKRIGLYRHFDETINRYKQSRDVSTLNSGKKSLELEHKALTSEVALLQSRLKT 540
Query: 1627 EGSDLCDKVSEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTYIENEKLISGKRQELVTK 1806
EGSDLCDKVSEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTYIENEKLISGKRQELVTK
Sbjct: 541 EGSDLCDKVSEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTYIENEKLISGKRQELVTK 600
Query: 1807 IDHILDAL 1830
IDHILDAL
Sbjct: 601 IDHILDAL 608
>ref|XP_003132455.2| PREDICTED: dolichyl-diphosphooligosaccharide--protein
glycosyltransferase subunit 1-like [Sus scrofa].
Length = 596
Score = 642 bits (1656), Expect = 0.0
Identities = 330/337 (97%), Positives = 332/337 (98%), Gaps = 1/337 (0%)
Frame = +1
Query: 823 SGISSIRSF-KTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHY 999
SG + SF +TILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHY
Sbjct: 260 SGKFKVHSFLQTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHY 319
Query: 1000 IVGYNLPSYEYLYNLGDQYALKMRLVDHVFDEQVIDSLTVKIILPEGAKNIQVDSPYEIS 1179
IVGYNLPSYEYLYNLGDQYALKMRLVDHVFDEQVIDSLTVKIILPEGAKNIQVDSPYEIS
Sbjct: 320 IVGYNLPSYEYLYNLGDQYALKMRLVDHVFDEQVIDSLTVKIILPEGAKNIQVDSPYEIS 379
Query: 1180 RAPDELHYTYLDTFGRPVIVAHKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILF 1359
RAPDELHYTYLDTFGRPVIVAHKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILF
Sbjct: 380 RAPDELHYTYLDTFGRPVIVAHKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILF 439
Query: 1360 FTVIVYVRLDFSITKDPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINRYKQSRDVS 1539
FTVIVYVRLDFSITKDPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINRYKQSRDVS
Sbjct: 440 FTVIVYVRLDFSITKDPAAEARMKVACITEQVLTLVNKRIGLYRHFDETINRYKQSRDVS 499
Query: 1540 TLNSGKKSLELEHKALTSEVALLQSRLKTEGSDLCDKVSEMQKLDAQVKELVLKSAVEAE 1719
TLNSGKKSLELEHKALTSEVALLQSRLKTEGSDLCDKVSEMQKLDAQVKELVLKSAVEAE
Sbjct: 500 TLNSGKKSLELEHKALTSEVALLQSRLKTEGSDLCDKVSEMQKLDAQVKELVLKSAVEAE 559
Query: 1720 RLVAGKLKKDTYIENEKLISGKRQELVTKIDHILDAL 1830
RLVAGKLKKDTYIENEKLISGKRQELVTKIDHILDAL
Sbjct: 560 RLVAGKLKKDTYIENEKLISGKRQELVTKIDHILDAL 596
>ref|XP_003132457.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein
glycosyltransferase subunit 1-like [Sus scrofa].
Length = 293
Score = 319 bits (817), Expect = 4e-87
Identities = 167/214 (78%), Positives = 167/214 (78%)
Frame = +1
Query: 1 PAMEAPAVCXXXXXXXXWAXXXXXXXXSPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAH 180
PAMEAPAVC WA SPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAH
Sbjct: 25 PAMEAPAVCLLPLLLLLWAWAPAPGRASPEALPLVNEDVKRTVDLSSHLAKVTAEVVLAH 84
Query: 181 AGSSSSPRXXXXXXXXXXXXXXXXXXXGVQVKGXXXXXXXXXXXXTKIKGKSGRFFTVTL 360
AGSSSSPR GVQVKG TKIKGKSGRFFTVTL
Sbjct: 85 AGSSSSPRAASFLLALEPELEARLAHLGVQVKGEDEEENNLEVRETKIKGKSGRFFTVTL 144
Query: 361 PVALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKL 540
PVALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKL
Sbjct: 145 PVALDPGAKISVTVETVYTHVLQPYPTQITQSEKQFVVFEGNHYFYSPYPTKSQSMRVKL 204
Query: 541 ASRNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQ 642
ASRNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQ
Sbjct: 205 ASRNVESYTKLGNPTRSEDLLDYGPFRDVPPYSQ 238
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 50,679,541
Number of extensions: 1382037
Number of successful extensions: 4393
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4366
Number of HSP's successfully gapped: 3
Length of query: 723
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 617
Effective length of database: 8,704,850
Effective search space: 5370892450
Effective search space used: 5370892450
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002292
(2170 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 652 0.0
Sscrofa_Chr10 68 2e-08
>Sscrofa_Chr13
|| Length = 218635234
Score = 652 bits (329), Expect = 0.0
Identities = 332/333 (99%)
Strand = Plus / Minus
Query: 1651 gtaagcgaaatgcagaaactggacgcacaggtcaaggagctggtactgaagtcagcggtg 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79273713 gtaagcgaaatgcagaaactggacgcacaggtcaaggagctggtactgaagtcagcggtg 79273654
Query: 1711 gaggccgagcggctggtggctggcaagctcaagaaagacacatacattgagaatgagaag 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79273653 gaggccgagcggctggtggctggcaagctcaagaaagacacatacattgagaatgagaag 79273594
Query: 1771 cttatctcgggaaagcgccaggagctggtcaccaagatcgaccacatcttggatgcactg 1830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79273593 cttatctcgggaaagcgccaggagctggtcaccaagatcgaccacatcttggatgcactg 79273534
Query: 1831 tagccatgtacttactttaagaaggcagaatgggggtggtgaccacccaggccagcaaat 1890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79273533 tagccatgtacttactttaagaaggcagaatgggggtggtgaccacccaggccagcaaat 79273474
Query: 1891 gctggcttctgtgtcctgcagaagaccttcaaggaagagagaagccaggccctgcctcag 1950
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79273473 gctgtcttctgtgtcctgcagaagaccttcaaggaagagagaagccaggccctgcctcag 79273414
Query: 1951 gcaacacaagaagcttagttgttgtccccagag 1983
|||||||||||||||||||||||||||||||||
Sbjct: 79273413 gcaacacaagaagcttagttgttgtccccagag 79273381
Score = 615 bits (310), Expect = e-173
Identities = 310/310 (100%)
Strand = Plus / Minus
Query: 334 agcgggagattcttcacagtcacactcccagttgctcttgatcctggggccaagatttca 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79284722 agcgggagattcttcacagtcacactcccagttgctcttgatcctggggccaagatttca 79284663
Query: 394 gtcactgtggaaaccgtttacacccacgtgcttcagccatatccaacacagatcacccaa 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79284662 gtcactgtggaaaccgtttacacccacgtgcttcagccatatccaacacagatcacccaa 79284603
Query: 454 tcagagaaacagtttgtggttttcgaggggaaccattatttctattctccctacccaacc 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79284602 tcagagaaacagtttgtggttttcgaggggaaccattatttctattctccctacccaacc 79284543
Query: 514 aagtcacaaagcatgcgtgtgaagctcgcctcccgaaacgtggaaagctacaccaagctg 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79284542 aagtcacaaagcatgcgtgtgaagctcgcctcccgaaacgtggaaagctacaccaagctg 79284483
Query: 574 gggaaccccacgcgctctgaggacctcctggattacgggcctttccgagatgtccctccc 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79284482 gggaaccccacgcgctctgaggacctcctggattacgggcctttccgagatgtccctccc 79284423
Query: 634 tatagtcagg 643
||||||||||
Sbjct: 79284422 tatagtcagg 79284413
Score = 502 bits (253), Expect = e-139
Identities = 253/253 (100%)
Strand = Plus / Minus
Query: 1403 aggatccggctgcagaggccaggatgaaggtggcctgcatcacagagcaggtcttgaccc 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79274618 aggatccggctgcagaggccaggatgaaggtggcctgcatcacagagcaggtcttgaccc 79274559
Query: 1463 tggtcaacaagagaataggtctctaccgccactttgatgagacgatcaatagatacaaac 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79274558 tggtcaacaagagaataggtctctaccgccactttgatgagacgatcaatagatacaaac 79274499
Query: 1523 agtcccgggatgtgtccaccctcaacagcggcaagaagagcctggagttggagcacaagg 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79274498 agtcccgggatgtgtccaccctcaacagcggcaagaagagcctggagttggagcacaagg 79274439
Query: 1583 ccttgaccagtgaggtggcactgctacagtccaggctgaagacagaaggctctgacctct 1642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79274438 ccttgaccagtgaggtggcactgctacagtccaggctgaagacagaaggctctgacctct 79274379
Query: 1643 gtgacaaagtaag 1655
|||||||||||||
Sbjct: 79274378 gtgacaaagtaag 79274366
Score = 422 bits (213), Expect = e-115
Identities = 213/213 (100%)
Strand = Plus / Minus
Query: 640 caggatacctttaaagtacattccgagaacaacagccccttcctgaccatcaccagcatg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79280312 caggatacctttaaagtacattccgagaacaacagccccttcctgaccatcaccagcatg 79280253
Query: 700 acacgagtcattgaagtctcccactggggtaatattgctgtggaagaaaatgtggacctg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79280252 acacgagtcattgaagtctcccactggggtaatattgctgtggaagaaaatgtggacctg 79280193
Query: 760 aagcacacgggggctgtgctgaaggggccgttttcccgctatgactatcagagacagcca 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79280192 aagcacacgggggctgtgctgaaggggccgttttcccgctatgactatcagagacagcca 79280133
Query: 820 gacagtgggatctcctccatccgttcttttaag 852
|||||||||||||||||||||||||||||||||
Sbjct: 79280132 gacagtgggatctcctccatccgttcttttaag 79280100
Score = 406 bits (205), Expect = e-110
Identities = 251/274 (91%)
Strand = Plus / Minus
Query: 1 ccggccatggaggcgcccgcagtctgcctgctaccgctgctgctgttgctctgggcctnn 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79289567 ccggccatggaggcgcccgcagtctgcctgctaccgctgctgctgttgctctgggcctgg 79289508
Query: 61 nnnnnnnnnnnnnnnnnnnnntcccccgaggcgctgccgctggtcaacgaggacgtgaag 120
|||||||||||||||||||||||||||||||||||||||
Sbjct: 79289507 gccccggcgccgggccgcgcctcccccgaggcgctgccgctggtcaacgaggacgtgaag 79289448
Query: 121 cgcacggtggatctgagcagccacctggctaaggtgacggccgaggtggtcctggcgcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79289447 cgcacggtggatctgagcagccacctggctaaggtgacggccgaggtggtcctggcgcac 79289388
Query: 181 gcgggcagcagctcctcgccccgcgccgcctccttcctactagccctggagcccgagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79289387 gcgggcagcagctcctcgccccgcgccgcctccttcctactagccctggagcccgagctg 79289328
Query: 241 gaggcccgcttggcgcacctcggcgtgcaggtga 274
||||||||||||||||||||||||||||||||||
Sbjct: 79289327 gaggcccgcttggcgcacctcggcgtgcaggtga 79289294
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 851 agaccatccttcctgctgctgcccaggatgtttattaccgggatgagattggcaatgttt 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79278440 agaccatccttcctgctgctgcccaggatgtttattaccgggatgagattggcaatgttt 79278381
Query: 911 ccaccagccaccttcttattttggacgattctgtagagatggaaatccggcctcgcttcc 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79278380 ccaccagccaccttcttattttggacgattctgtagagatggaaatccggcctcgcttcc 79278321
Query: 971 ctctttttggcgggtggaagacccactacatcgttggctacaacctcccaagctacgagt 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79278320 ctctttttggcgggtggaagacccactacatcgttggctacaacctcccaagctacgagt 79278261
Query: 1031 acctctataatttggg 1046
||||||||||||||||
Sbjct: 79278260 acctctataatttggg 79278245
Score = 272 bits (137), Expect = 8e-70
Identities = 140/141 (99%)
Strand = Plus / Minus
Query: 1146 gaacatccaggtggacagtccctacgagatcagccgagcccctgacgagctgcactacac 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79276472 gaacatccaggtggacagtccctacgagatcagccgagcccctgacgagctgcactacac 79276413
Query: 1206 ctacctggacacgtttggccgccccgtgatcgtggcccacaagaagaacctggtggaaca 1265
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 79276412 ctacctggacacgtttggccgccccgtgattgtggcccacaagaagaacctggtggaaca 79276353
Query: 1266 gcatattcaggacattgtggt 1286
|||||||||||||||||||||
Sbjct: 79276352 gcatattcaggacattgtggt 79276332
Score = 242 bits (122), Expect = 7e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 1284 ggtgcactacacattcaacaaggtgctcatgctgcaggagcccctgctggtggtggccgc 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79276160 ggtgcactacacattcaacaaggtgctcatgctgcaggagcccctgctggtggtggccgc 79276101
Query: 1344 cttttacatcctgttcttcaccgtcattgtctacgtcaggctggacttctccatcacaaa 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79276100 cttttacatcctgttcttcaccgtcattgtctacgtcaggctggacttctccatcacaaa 79276041
Query: 1404 gg 1405
||
Sbjct: 79276040 gg 79276039
Score = 202 bits (102), Expect = 6e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 1045 ggagaccagtatgcactgaagatgaggcttgtggaccatgtgtttgatgagcaagtgata 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79277360 ggagaccagtatgcactgaagatgaggcttgtggaccatgtgtttgatgagcaagtgata 79277301
Query: 1105 gactctctgactgtgaagatcatcttgcctgaaggggccaag 1146
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79277300 gactctctgactgtgaagatcatcttgcctgaaggggccaag 79277259
Score = 135 bits (68), Expect = 1e-28
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 268 caggtgaagggagaggatgaggaagagaacaatctggaagtgagagaaaccaaaattaag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79285731 caggtgaagggagaggatgaggaagagaacaatctggaagtgagagaaaccaaaattaag 79285672
Query: 328 ggtaaaag 335
||||||||
Sbjct: 79285671 ggtaaaag 79285664
Score = 89.7 bits (45), Expect = 6e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 2118 ctgtaagtcccttgttttatgcccttctaatttctgatgtttggg 2162
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79273249 ctgtaagtcccttgttttatgcccttctaatttctgatgtttggg 79273205
>Sscrofa_Chr10
|| Length = 79102373
Score = 67.9 bits (34), Expect = 2e-08
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 1927 gagagaagccaggccctgcctcaggcaacacaagaagcttag 1968
|||||||||||||||||||||||| || ||||||||||||||
Sbjct: 37811065 gagagaagccaggccctgcctcagccagcacaagaagcttag 37811106
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 54,879,534
Number of extensions: 363
Number of successful extensions: 363
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 13
Length of query: 2170
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2148
Effective length of database: 2,808,408,574
Effective search space: 6032461616952
Effective search space used: 6032461616952
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)