Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002294
(1635 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091461.1| peflin [Bos taurus]. 340 2e-93
Alignment gi|NP_001098967.1| programmed cell death 6 [Bos taurus]. 135 1e-31
Alignment gi|NP_001068818.1| sorcin [Bos taurus]. 109 8e-24
Alignment gi|XP_002694832.1| PREDICTED: calpain small subunit 2-like [Bos... 82 1e-15
Alignment gi|XP_002697306.1| PREDICTED: calpain 1, large subunit-like [Bo... 80 4e-15
Alignment gi|XP_606373.4| PREDICTED: calpain 1, large subunit [Bos taurus]. 80 4e-15
Alignment gi|NP_776686.1| calpain small subunit 1 [Bos taurus]. 78 3e-14
Alignment gi|NP_776685.1| calpain-3 [Bos taurus]. 77 3e-14
Alignment gi|NP_776684.1| calpain-1 catalytic subunit [Bos taurus]. 76 8e-14
Alignment gi|XP_002685422.1| PREDICTED: grancalcin, EF-hand calcium bindi... 75 1e-13
>ref|NP_001091461.1| peflin [Bos taurus].
Length = 287
Score = 340 bits (873), Expect = 2e-93
Identities = 166/171 (97%), Positives = 170/171 (99%)
Frame = +2
Query: 395 NVDPEAYSWFQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDV 574
NVDPEAYSWFQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMIN+FDKTK+GRIDV
Sbjct: 117 NVDPEAYSWFQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINMFDKTKSGRIDV 176
Query: 575 YGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRS 754
YGFSALWKFIQQWKNLFQQYDRD SGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRS
Sbjct: 177 YGFSALWKFIQQWKNLFQQYDRDCSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRS 236
Query: 755 ANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML 907
ANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQG++RLSFEDFVTMTASRML
Sbjct: 237 ANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGSVRLSFEDFVTMTASRML 287
>ref|NP_001098967.1| programmed cell death 6 [Bos taurus].
Length = 189
Score = 135 bits (340), Expect = 1e-31
Identities = 70/166 (42%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 407 EAYSW--FQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDVYG 580
+++ W FQ VD D SG IS EL+QAL N W+ FN T +I++FD+ ++
Sbjct: 23 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 82
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 760
F+ +WK+I W+N+F+ YDRD+SG I EL+QALS GY LS QF +L+ ++ R
Sbjct: 83 FTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKF-DRQGR 141
Query: 761 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 898
+ D FIQ C LQ LT+ FR DT G I++S+E +++M S
Sbjct: 142 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 187
>ref|NP_001068818.1| sorcin [Bos taurus].
Length = 183
Score = 109 bits (272), Expect = 8e-24
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 4/166 (2%)
Frame = +2
Query: 413 YSWFQSVDSDHSGYISIKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYG 580
Y +F +V + G I EL++ L S + FN ETC +M+++ D+ +G +
Sbjct: 21 YGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNE 79
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 760
F LW + W+ F +D D SG++ ELQ+AL+ MG+ LSPQ + RY S N
Sbjct: 80 FKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY---STN 136
Query: 761 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 898
+ D +I C +L+ LT++FR +DTA QG + ++DF+ S
Sbjct: 137 GKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMS 182
>ref|XP_002694832.1| PREDICTED: calpain small subunit 2-like [Bos taurus].
Length = 246
Score = 82.4 bits (202), Expect = 1e-15
Identities = 39/129 (30%), Positives = 72/129 (55%)
Frame = +2
Query: 506 FNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQAL 685
F+ +TC ++++ D TG++ F LW I++W+ +++QYDRD SG + ++L AL
Sbjct: 117 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQYDRDQSGFLGSSQLPGAL 176
Query: 686 SQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRL 865
G+ L+ Q Q++V RY +M + FI +L + AF+ D G I++
Sbjct: 177 QAAGFQLNEQLYQMIVRRYAEEDG--SMDFNNFISCLVRLDAMFRAFKSLDRDADGLIQV 234
Query: 866 SFEDFVTMT 892
S ++++ +T
Sbjct: 235 SIQEWLQLT 243
>ref|XP_002697306.1| PREDICTED: calpain 1, large subunit-like [Bos taurus].
Length = 718
Score = 80.5 bits (197), Expect = 4e-15
Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 7/173 (4%)
Frame = +2
Query: 395 NVDPEAYSWFQSVDSDHSGYISIKELKQAL-------VNSNWSSFNDETCLMMINLFDKT 553
++D + F V I + EL++ L N F+ + C M+NL DK
Sbjct: 545 DIDQDFVRLFHIVAGGEGKEIGMYELQKLLNKVVSRFKNFKTKGFSLDVCRCMVNLLDKD 604
Query: 554 KTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLV 733
+G++ + F LW+ I++W ++F++ D+D SG+++ E++ A+ + G L+ + TQ+LV
Sbjct: 605 GSGKLGLREFQVLWRKIKKWTDIFRECDQDQSGTLNSYEMRLAVEKAGIKLNNKVTQVLV 664
Query: 734 SRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMT 892
+RY S M+ D FI +L+ + F D G I L ++ +T
Sbjct: 665 ARYANDSL--IMEFDSFISCFLRLKAMFTYFLTMDPENTGQISLDLNQWLQIT 715
>ref|XP_606373.4| PREDICTED: calpain 1, large subunit [Bos taurus].
Length = 718
Score = 80.5 bits (197), Expect = 4e-15
Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 7/173 (4%)
Frame = +2
Query: 395 NVDPEAYSWFQSVDSDHSGYISIKELKQAL-------VNSNWSSFNDETCLMMINLFDKT 553
++D + F V I + EL++ L N F+ + C M+NL DK
Sbjct: 545 DIDQDFVRLFHIVAGGEGKEIGMYELQKLLNKVVSRFKNFKTKGFSLDVCRCMVNLLDKD 604
Query: 554 KTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLV 733
+G++ + F LW+ I++W ++F++ D+D SG+++ E++ A+ + G L+ + TQ+LV
Sbjct: 605 GSGKLGLREFQVLWRKIKKWTDIFRECDQDQSGTLNSYEMRLAVEKAGIKLNNKVTQVLV 664
Query: 734 SRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMT 892
+RY S M+ D FI +L+ + F D G I L ++ +T
Sbjct: 665 ARYANDSL--IMEFDSFISCFLRLKAMFTYFLTMDPENTGQISLDLNQWLQIT 715
>ref|NP_776686.1| calpain small subunit 1 [Bos taurus].
Length = 263
Score = 77.8 bits (190), Expect = 3e-14
Identities = 37/129 (28%), Positives = 67/129 (51%)
Frame = +2
Query: 506 FNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQAL 685
F +TC M+ + D TG++ F LW I++W+ +++Q+D D SG+I +EL A
Sbjct: 134 FGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAVYKQFDVDRSGTIGSSELPGAF 193
Query: 686 SQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRL 865
G+ L+ +++ RY N M D FI +L + AF+ D G I++
Sbjct: 194 EAAGFRLNEHLYNMIIRRYSDEGGN--MDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQV 251
Query: 866 SFEDFVTMT 892
+ ++++ +T
Sbjct: 252 NIQEWLQLT 260
>ref|NP_776685.1| calpain-3 [Bos taurus].
Length = 822
Score = 77.4 bits (189), Expect = 3e-14
Identities = 41/129 (31%), Positives = 71/129 (55%)
Frame = +2
Query: 506 FNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQAL 685
F E+C MI L D +GR+++ F LWK I+ W+ +F+ YD D SG+I+ E++ A+
Sbjct: 693 FTLESCRSMIALMDTDGSGRLNLQEFHHLWKKIKTWQKIFKHYDTDQSGTINSYEMRNAV 752
Query: 686 SQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRL 865
G++L+ Q ++ RY + N + D FI +L+ + AF D G I+L
Sbjct: 753 KDAGFHLNNQLYDIITMRYADKYMN--IDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKL 810
Query: 866 SFEDFVTMT 892
+ +++ +T
Sbjct: 811 NVLEWLQLT 819
>ref|NP_776684.1| calpain-1 catalytic subunit [Bos taurus].
Length = 716
Score = 76.3 bits (186), Expect = 8e-14
Identities = 41/153 (26%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Frame = +2
Query: 455 ISIKELKQAL-------VNSNWSSFNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQW 613
IS+KEL+ L + + F+ E+C M+NL D+ G++ + F+ LW I+ +
Sbjct: 563 ISVKELRTILNRIISKHKDLRTTGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNY 622
Query: 614 KNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQV 793
++F+++D D SGS+S E++ A+ G+ L+ + +L+++RY + A+ D F+
Sbjct: 623 LSIFRKFDLDKSGSMSAYEMRMAIEFAGFKLNKKLYELIITRY--SEPDLAVDFDNFVCC 680
Query: 794 CTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMT 892
+L+ + F+ DT + G + ++ +T
Sbjct: 681 LVRLETMFRFFKTLDTDLDGVVTFDLFKWLQLT 713
>ref|XP_002685422.1| PREDICTED: grancalcin, EF-hand calcium binding protein [Bos
taurus].
Length = 363
Score = 75.5 bits (184), Expect = 1e-13
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
Frame = +2
Query: 449 GYISIKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWK 616
G + +EL++ L S +S F+ ETC +MI + D+
Sbjct: 235 GEVDAEELQKCLTQSGISGTYSPFSLETCRIMIAMLDQN--------------------- 273
Query: 617 NLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVC 796
F D+D SGS+ + EL QA++ MGY LSPQ +V RY S N + D ++ C
Sbjct: 274 --FITVDKDGSGSVEHHELNQAIAAMGYRLSPQTVTTIVKRY---SKNGRIFFDDYVACC 328
Query: 797 TQLQVLTEAFREKDTAVQGNIRLSFEDFVTMT 892
+L+ LT+ FR +D QG + ++DF+ T
Sbjct: 329 VKLRALTDFFRRRDHLQQGVVSFVYDDFLQGT 360
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 62,826,212
Number of extensions: 1823780
Number of successful extensions: 8606
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 8567
Number of HSP's successfully gapped: 16
Length of query: 545
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 438
Effective length of database: 14,140,958
Effective search space: 6193739604
Effective search space used: 6193739604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002294
(1635 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854701.1| PREDICTED: similar to penta-EF hand domain cont... 263 3e-70
Alignment gi|XP_851917.1| PREDICTED: similar to Programmed cell death pro... 135 1e-31
Alignment gi|XP_532452.1| PREDICTED: similar to Sorcin (22 kDa protein) (... 109 9e-24
Alignment gi|XP_546249.2| PREDICTED: similar to Programmed cell death pro... 106 7e-23
Alignment gi|XP_850249.1| PREDICTED: similar to grancalcin [Canis familia... 100 3e-21
Alignment gi|XP_852010.1| PREDICTED: similar to Calpain-11 (Calcium-activ... 82 1e-15
Alignment gi|XP_544399.2| PREDICTED: similar to calpain small subunit 2 [... 82 1e-15
Alignment gi|XP_859431.1| PREDICTED: similar to Calpain-3 (Calpain L3) (C... 81 3e-15
Alignment gi|XP_859394.1| PREDICTED: similar to calpain 3 isoform c isofo... 81 3e-15
Alignment gi|XP_859356.1| PREDICTED: similar to Calpain-3 (Calpain L3) (C... 81 3e-15
>ref|XP_854701.1| PREDICTED: similar to penta-EF hand domain containing 1 [Canis
familiaris].
Length = 278
Score = 263 bits (673), Expect = 3e-70
Identities = 137/172 (79%), Positives = 147/172 (85%), Gaps = 1/172 (0%)
Frame = +2
Query: 395 NVDPEAYSW-FQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRID 571
N+ + W F SV S SG +S K + Q L S +++ CLM IN+FDKTK+GRID
Sbjct: 110 NLTRVGWKWMFLSVTSARSGKVSRKAVPQTLSCSPYAA---SPCLMRINMFDKTKSGRID 166
Query: 572 VYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPR 751
VYGFSALWKFIQQWKNLFQQYDRD SGSIS+TELQQALSQMGYNLSPQFTQLLVSRYCPR
Sbjct: 167 VYGFSALWKFIQQWKNLFQQYDRDRSGSISHTELQQALSQMGYNLSPQFTQLLVSRYCPR 226
Query: 752 SANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML 907
SANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML
Sbjct: 227 SANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML 278
>ref|XP_851917.1| PREDICTED: similar to Programmed cell death protein 6 (Probable
calcium-binding protein ALG-2) (PMP41) (ALG-257) [Canis
familiaris].
Length = 189
Score = 135 bits (340), Expect = 1e-31
Identities = 70/166 (42%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 407 EAYSW--FQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDVYG 580
+++ W FQ VD D SG IS EL+QAL N W+ FN T +I++FD+ ++
Sbjct: 23 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 82
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 760
F+ +WK+I W+N+F+ YDRD+SG I EL+QALS GY LS QF +L+ ++ R
Sbjct: 83 FTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKF-DRQGR 141
Query: 761 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 898
+ D FIQ C LQ LT+ FR DT G I++S+E +++M S
Sbjct: 142 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 187
>ref|XP_532452.1| PREDICTED: similar to Sorcin (22 kDa protein) (CP-22) (V19) [Canis
familiaris].
Length = 198
Score = 109 bits (272), Expect = 9e-24
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 4/166 (2%)
Frame = +2
Query: 413 YSWFQSVDSDHSGYISIKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYG 580
Y +F +V + G I EL++ L S + FN ETC +M+++ D+ +G +
Sbjct: 36 YGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNE 94
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 760
F LW + W+ F +D D SG++ ELQ+AL+ MG+ LSPQ + RY S N
Sbjct: 95 FKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY---STN 151
Query: 761 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 898
+ D +I C +L+ LT++FR +DTA QG + ++DF+ S
Sbjct: 152 GKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMS 197
>ref|XP_546249.2| PREDICTED: similar to Programmed cell death protein 6 (Probable
calcium-binding protein ALG-2) (PMP41) (ALG-257) [Canis
familiaris].
Length = 150
Score = 106 bits (264), Expect = 7e-23
Identities = 50/114 (43%), Positives = 72/114 (63%), Gaps = 2/114 (1%)
Frame = +2
Query: 407 EAYSW--FQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDVYG 580
+++ W FQ VD D SG IS EL+QAL N W+ FN T +I++FD+ ++
Sbjct: 23 QSFLWNVFQRVDKDRSGVISGNELQQALSNGTWTPFNPVTVCSIISMFDRENKAGVNFSE 82
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRY 742
F+ +WK+I W+N+F YDRD+SG I EL+QALS GY LS QF +L+ ++
Sbjct: 83 FTGVWKYITDWQNVFHTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIHKF 136
>ref|XP_850249.1| PREDICTED: similar to grancalcin [Canis familiaris].
Length = 294
Score = 100 bits (250), Expect = 3e-21
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Frame = +2
Query: 413 YSWFQSVDSDHSGYISIKELKQAL----VNSNWSSFNDETCLMMINLFDKTKTGRIDVYG 580
+++F +V + G + +EL++ L +N +S F+ ETC +MI + D+ TG++
Sbjct: 55 WTYFTAV-AGQDGEVDAEELQRCLTQSGINGIYSPFSLETCRIMIAMLDRDYTGKMGFNE 113
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 760
F LW + WK F D+D SG++ + EL QA++ MGY LSPQ +V RY S N
Sbjct: 114 FKELWAALNAWKQHFIAIDQDQSGTVEHHELNQAIAAMGYRLSPQTLTAIVKRY---SKN 170
Query: 761 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFED 877
+ D ++ C +L+ LT+ FR +D QG + ++D
Sbjct: 171 GRIFFDDYVACCVKLRALTDFFRRRDHLQQGVVNFVYDD 209
>ref|XP_852010.1| PREDICTED: similar to Calpain-11 (Calcium-activated neutral
proteinase 11) (CANP 11) [Canis familiaris].
Length = 870
Score = 82.0 bits (201), Expect = 1e-15
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Frame = +2
Query: 395 NVDPEAYSWFQSVDSDHSGYISIKELKQAL-------VNSNWSSFNDETCLMMINLFDKT 553
+VD + F+ V I + EL++ L N F + C M+NL DK
Sbjct: 499 DVDQDFIHLFEIVAGGEGKEIGMYELQKLLNKVVTKRENFRTQGFGLDVCRCMVNLMDKD 558
Query: 554 KTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLV 733
+G++ + F LWK I++W ++F++ D DHSGS++ E++ A+ + G LS + TQ+LV
Sbjct: 559 GSGKLGLPEFQILWKKIKKWTDIFRECDEDHSGSLNSYEMRLAIEKAGIKLSNKVTQVLV 618
Query: 734 SRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLS 868
+RY + + + D FI +L+ + F D G I L+
Sbjct: 619 ARY--SNEDMIVDFDSFISCFLRLKAMFTYFLSMDPKNTGYIHLN 661
>ref|XP_544399.2| PREDICTED: similar to calpain small subunit 2 [Canis familiaris].
Length = 251
Score = 82.0 bits (201), Expect = 1e-15
Identities = 36/129 (27%), Positives = 73/129 (56%)
Frame = +2
Query: 506 FNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQAL 685
F+ +TC ++++ D TG++ F LW I++W+ +++QYDRD SGS+ ++L+ AL
Sbjct: 122 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQYDRDRSGSLGSSQLRAAL 181
Query: 686 SQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRL 865
G+ L+ Q Q+++ R+ +M + FI +L + F+ D G +++
Sbjct: 182 QAAGFQLNEQLYQMIIRRFADEDG--SMDFNNFISCLVRLDAMFRVFKSLDRDADGLVQV 239
Query: 866 SFEDFVTMT 892
S ++++ +T
Sbjct: 240 SIQEWLQLT 248
>ref|XP_859431.1| PREDICTED: similar to Calpain-3 (Calpain L3) (Calpain p94)
(Calcium-activated neutral proteinase 3) (CANP 3)
(Muscle-specific calcium-activated neutral protease 3)
isoform 20 [Canis familiaris].
Length = 778
Score = 80.9 bits (198), Expect = 3e-15
Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Frame = +2
Query: 461 IKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQ 628
+K + +VN N F E+C MI L D +GR+++ F LWK I+ W+ +F+
Sbjct: 630 LKNILNMVVNKNKDLKTQGFTLESCRSMIALLDTDGSGRLNLQEFHHLWKKIKAWQKIFK 689
Query: 629 QYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQ 808
YD D SG+I+ E++ A++ G++L+ Q ++ RY + N + D FI +L+
Sbjct: 690 HYDTDQSGTINSYEMRNAVNDAGFHLNSQLYDIITMRYADKHMN--IDFDSFICCFVRLE 747
Query: 809 VLTEAFREKDTAVQGNIRLSFEDFVTMT 892
+ AF D G I+L+ +++ +T
Sbjct: 748 GMFRAFNAFDKDGDGIIKLNVLEWLQLT 775
>ref|XP_859394.1| PREDICTED: similar to calpain 3 isoform c isoform 19 [Canis
familiaris].
Length = 724
Score = 80.9 bits (198), Expect = 3e-15
Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Frame = +2
Query: 461 IKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQ 628
+K + +VN N F E+C MI L D +GR+++ F LWK I+ W+ +F+
Sbjct: 576 LKNILNMVVNKNKDLKTQGFTLESCRSMIALLDTDGSGRLNLQEFHHLWKKIKAWQKIFK 635
Query: 629 QYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQ 808
YD D SG+I+ E++ A++ G++L+ Q ++ RY + N + D FI +L+
Sbjct: 636 HYDTDQSGTINSYEMRNAVNDAGFHLNSQLYDIITMRYADKHMN--IDFDSFICCFVRLE 693
Query: 809 VLTEAFREKDTAVQGNIRLSFEDFVTMT 892
+ AF D G I+L+ +++ +T
Sbjct: 694 GMFRAFNAFDKDGDGIIKLNVLEWLQLT 721
>ref|XP_859356.1| PREDICTED: similar to Calpain-3 (Calpain L3) (Calpain p94)
(Calcium-activated neutral proteinase 3) (CANP 3)
(Muscle-specific calcium-activated neutral protease 3)
isoform 18 [Canis familiaris].
Length = 815
Score = 80.9 bits (198), Expect = 3e-15
Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Frame = +2
Query: 461 IKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQ 628
+K + +VN N F E+C MI L D +GR+++ F LWK I+ W+ +F+
Sbjct: 667 LKNILNMVVNKNKDLKTQGFTLESCRSMIALLDTDGSGRLNLQEFHHLWKKIKAWQKIFK 726
Query: 629 QYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQ 808
YD D SG+I+ E++ A++ G++L+ Q ++ RY + N + D FI +L+
Sbjct: 727 HYDTDQSGTINSYEMRNAVNDAGFHLNSQLYDIITMRYADKHMN--IDFDSFICCFVRLE 784
Query: 809 VLTEAFREKDTAVQGNIRLSFEDFVTMT 892
+ AF D G I+L+ +++ +T
Sbjct: 785 GMFRAFNAFDKDGDGIIKLNVLEWLQLT 812
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 65,519,776
Number of extensions: 1879237
Number of successful extensions: 8359
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 8300
Number of HSP's successfully gapped: 32
Length of query: 545
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 437
Effective length of database: 15,274,216
Effective search space: 6674832392
Effective search space used: 6674832392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002294
(1635 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036524.1| peflin [Homo sapiens]. 341 1e-93
Alignment gi|NP_037364.1| programmed cell death protein 6 [Homo sapiens]. 135 1e-31
Alignment gi|NP_944490.1| sorcin isoform b [Homo sapiens]. 109 8e-24
Alignment gi|NP_003121.1| sorcin isoform a [Homo sapiens]. 109 8e-24
Alignment gi|NP_036330.1| grancalcin [Homo sapiens]. 108 1e-23
Alignment gi|NP_115706.1| calpain small subunit 2 [Homo sapiens]. 87 6e-17
Alignment gi|NP_001740.1| calpain small subunit 1 [Homo sapiens]. 80 4e-15
Alignment gi|NP_001003962.1| calpain small subunit 1 [Homo sapiens]. 80 4e-15
Alignment gi|NP_008989.2| calpain-11 [Homo sapiens]. 80 7e-15
Alignment gi|NP_001185798.1| calpain-1 catalytic subunit [Homo sapiens]. 77 5e-14
>ref|NP_036524.1| peflin [Homo sapiens].
Length = 284
Score = 341 bits (874), Expect = 1e-93
Identities = 166/171 (97%), Positives = 169/171 (98%)
Frame = +2
Query: 395 NVDPEAYSWFQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDV 574
NVDPEAYSWFQSVDSDHSGYIS+KELKQALVN NWSSFNDETCLMMIN+FDKTK+GRIDV
Sbjct: 114 NVDPEAYSWFQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMINMFDKTKSGRIDV 173
Query: 575 YGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRS 754
YGFSALWKFIQQWKNLFQQYDRD SGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRS
Sbjct: 174 YGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRS 233
Query: 755 ANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML 907
ANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML
Sbjct: 234 ANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML 284
>ref|NP_037364.1| programmed cell death protein 6 [Homo sapiens].
Length = 191
Score = 135 bits (339), Expect = 1e-31
Identities = 70/166 (42%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 407 EAYSW--FQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDVYG 580
+++ W FQ VD D SG IS EL+QAL N W+ FN T +I++FD+ ++
Sbjct: 25 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 84
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 760
F+ +WK+I W+N+F+ YDRD+SG I EL+QALS GY LS QF +L+ ++ R
Sbjct: 85 FTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKF-DRQGR 143
Query: 761 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 898
+ D FIQ C LQ LT+ FR DT G I++S+E +++M S
Sbjct: 144 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 189
>ref|NP_944490.1| sorcin isoform b [Homo sapiens].
Length = 183
Score = 109 bits (272), Expect = 8e-24
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 4/166 (2%)
Frame = +2
Query: 413 YSWFQSVDSDHSGYISIKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYG 580
Y +F +V + G I EL++ L S + FN ETC +M+++ D+ +G +
Sbjct: 21 YGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNE 79
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 760
F LW + W+ F +D D SG++ ELQ+AL+ MG+ LSPQ + RY S N
Sbjct: 80 FKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY---STN 136
Query: 761 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 898
+ D +I C +L+ LT++FR +DTA QG + ++DF+ S
Sbjct: 137 GKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMS 182
>ref|NP_003121.1| sorcin isoform a [Homo sapiens].
Length = 198
Score = 109 bits (272), Expect = 8e-24
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 4/166 (2%)
Frame = +2
Query: 413 YSWFQSVDSDHSGYISIKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYG 580
Y +F +V + G I EL++ L S + FN ETC +M+++ D+ +G +
Sbjct: 36 YGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNE 94
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 760
F LW + W+ F +D D SG++ ELQ+AL+ MG+ LSPQ + RY S N
Sbjct: 95 FKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY---STN 151
Query: 761 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 898
+ D +I C +L+ LT++FR +DTA QG + ++DF+ S
Sbjct: 152 GKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMS 197
>ref|NP_036330.1| grancalcin [Homo sapiens].
Length = 217
Score = 108 bits (271), Expect = 1e-23
Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 4/164 (2%)
Frame = +2
Query: 413 YSWFQSVDSDHSGYISIKELKQAL----VNSNWSSFNDETCLMMINLFDKTKTGRIDVYG 580
Y++F +V + G + +EL++ L +N +S F+ ETC +MI + D+ TG++
Sbjct: 55 YTYFSAV-AGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNA 113
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 760
F LW + WK F D+D SG++ + EL+QA+ MGY LSPQ +V RY S N
Sbjct: 114 FKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY---SKN 170
Query: 761 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMT 892
+ D ++ C +L+ LT+ FR++D QG+ ++DF+ T
Sbjct: 171 GRIFFDDYVACCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGT 214
>ref|NP_115706.1| calpain small subunit 2 [Homo sapiens].
Length = 248
Score = 86.7 bits (213), Expect = 6e-17
Identities = 41/129 (31%), Positives = 75/129 (58%)
Frame = +2
Query: 506 FNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQAL 685
F+ +TC ++++ D TG++ F LW I++W+ +++QYDRDHSGS+ ++L+ AL
Sbjct: 119 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQYDRDHSGSLGSSQLRGAL 178
Query: 686 SQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRL 865
G+ L+ Q Q++V RY + M + FI +L + AF+ D G I++
Sbjct: 179 QAAGFQLNEQLYQMIVRRYANEDGD--MDFNNFISCLVRLDAMFRAFKSLDRDRDGLIQV 236
Query: 866 SFEDFVTMT 892
S ++++ +T
Sbjct: 237 SIKEWLQLT 245
>ref|NP_001740.1| calpain small subunit 1 [Homo sapiens].
Length = 268
Score = 80.5 bits (197), Expect = 4e-15
Identities = 38/129 (29%), Positives = 69/129 (53%)
Frame = +2
Query: 506 FNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQAL 685
F +TC M+ + D TG++ F LW I++W+ +++Q+D D SG+I +EL A
Sbjct: 139 FGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAF 198
Query: 686 SQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRL 865
G++L+ +++ RY S N M D FI +L + AF+ D G I++
Sbjct: 199 EAAGFHLNEHLYNMIIRRYSDESGN--MDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQV 256
Query: 866 SFEDFVTMT 892
+ ++++ +T
Sbjct: 257 NIQEWLQLT 265
>ref|NP_001003962.1| calpain small subunit 1 [Homo sapiens].
Length = 268
Score = 80.5 bits (197), Expect = 4e-15
Identities = 38/129 (29%), Positives = 69/129 (53%)
Frame = +2
Query: 506 FNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQAL 685
F +TC M+ + D TG++ F LW I++W+ +++Q+D D SG+I +EL A
Sbjct: 139 FGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSELPGAF 198
Query: 686 SQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRL 865
G++L+ +++ RY S N M D FI +L + AF+ D G I++
Sbjct: 199 EAAGFHLNEHLYNMIIRRYSDESGN--MDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQV 256
Query: 866 SFEDFVTMT 892
+ ++++ +T
Sbjct: 257 NIQEWLQLT 265
>ref|NP_008989.2| calpain-11 [Homo sapiens].
Length = 739
Score = 79.7 bits (195), Expect = 7e-15
Identities = 41/129 (31%), Positives = 73/129 (56%)
Frame = +2
Query: 506 FNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQAL 685
F + C MINL DK +G++ + F LWK +++W ++F++ D+DHSG+++ E++ +
Sbjct: 610 FGLDACRCMINLMDKDGSGKLGLLEFKILWKKLKKWMDIFRECDQDHSGTLNSYEMRLVI 669
Query: 686 SQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRL 865
+ G L+ + Q+LV+RY + + D FI +L+ + F D G+I L
Sbjct: 670 EKAGIKLNNKVMQVLVARYA--DDDLIIDFDSFISCFLRLKTMFTFFLTMDPKNTGHICL 727
Query: 866 SFEDFVTMT 892
S E ++ MT
Sbjct: 728 SLEQWLQMT 736
>ref|NP_001185798.1| calpain-1 catalytic subunit [Homo sapiens].
Length = 714
Score = 77.0 bits (188), Expect = 5e-14
Identities = 41/153 (26%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Frame = +2
Query: 455 ISIKELKQAL-------VNSNWSSFNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQW 613
IS+KEL+ L + F+ E+C M+NL D+ G++ + F+ LW I+ +
Sbjct: 561 ISVKELRTILNRIISKHKDLRTKGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNY 620
Query: 614 KNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQV 793
++F+++D D SGS+S E++ A+ G+ L+ + +L+++RY + A+ D F+
Sbjct: 621 LSIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLYELIITRY--SEPDLAVDFDNFVCC 678
Query: 794 CTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMT 892
+L+ + F+ DT + G + ++ +T
Sbjct: 679 LVRLETMFRFFKTLDTDLDGVVTFDLFKWLQLT 711
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 64,231,730
Number of extensions: 1844868
Number of successful extensions: 8566
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 8520
Number of HSP's successfully gapped: 25
Length of query: 545
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 438
Effective length of database: 14,770,016
Effective search space: 6469267008
Effective search space used: 6469267008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002294
(1635 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080717.2| peflin [Mus musculus]. 322 5e-88
Alignment gi|NP_035181.1| programmed cell death protein 6 [Mus musculus]. 135 9e-32
Alignment gi|NP_663498.1| grancalcin [Mus musculus]. 105 8e-23
Alignment gi|NP_079894.2| sorcin isoform 2 [Mus musculus]. 105 1e-22
Alignment gi|NP_001074443.1| sorcin isoform 1 [Mus musculus]. 105 1e-22
Alignment gi|NP_001013789.1| calpain-11 [Mus musculus]. 84 3e-16
Alignment gi|NP_001103231.1| calpain-3 isoform b [Mus musculus]. 82 1e-15
Alignment gi|NP_001171270.1| calpain-3 isoform c [Mus musculus]. 82 1e-15
Alignment gi|NP_031627.2| calpain-3 isoform a [Mus musculus]. 82 1e-15
Alignment gi|NP_081388.1| calpain small subunit 2 [Mus musculus]. 81 3e-15
>ref|NP_080717.2| peflin [Mus musculus].
Length = 275
Score = 322 bits (825), Expect = 5e-88
Identities = 158/171 (92%), Positives = 165/171 (96%)
Frame = +2
Query: 395 NVDPEAYSWFQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDV 574
NVDPEAYSWFQSVD+DHSGYIS+KELKQALVNSNWSSFNDETCLMMIN+FDKTK+GRIDV
Sbjct: 105 NVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKSGRIDV 164
Query: 575 YGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRS 754
GFSALWKF+QQW+NLFQQYDRD SGSIS TELQQALSQMGYNLSPQFTQLLVSRYC RS
Sbjct: 165 AGFSALWKFLQQWRNLFQQYDRDRSGSISSTELQQALSQMGYNLSPQFTQLLVSRYCARS 224
Query: 755 ANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML 907
A PAMQLD FI+VCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML
Sbjct: 225 AIPAMQLDCFIKVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML 275
>ref|NP_035181.1| programmed cell death protein 6 [Mus musculus].
Length = 191
Score = 135 bits (340), Expect = 9e-32
Identities = 70/166 (42%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Frame = +2
Query: 407 EAYSW--FQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDVYG 580
+++ W FQ VD D SG IS EL+QAL N W+ FN T +I++FD+ ++
Sbjct: 25 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 84
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 760
F+ +WK+I W+N+F+ YDRD+SG I EL+QALS GY LS QF +L+ ++ R
Sbjct: 85 FTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKF-DRQGR 143
Query: 761 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 898
+ D FIQ C LQ LT+ FR DT G I++S+E +++M S
Sbjct: 144 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 189
>ref|NP_663498.1| grancalcin [Mus musculus].
Length = 220
Score = 105 bits (263), Expect = 8e-23
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 6/170 (3%)
Frame = +2
Query: 401 DPEAYSWFQSVDSDHSGYISIKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRI 568
D +++F +V + G + +EL++ L S ++ F+ ETC +MI + D+ TG++
Sbjct: 54 DDSMWTYFTAV-AGQDGEVDAEELQRCLTQSGISGTYAPFSLETCRIMIAMLDRDYTGKM 112
Query: 569 DVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCP 748
F LW + WK F D+D SG++ + EL QA++ MGY LSPQ +V RY
Sbjct: 113 GFNEFKELWAALNAWKQNFMTIDQDQSGTVEHHELSQAIALMGYRLSPQTLAAIVRRY-- 170
Query: 749 RSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFV--TMT 892
S N + D ++ C +L+ LT+ FR +D QG + +EDF+ TMT
Sbjct: 171 -SKNGRIFFDDYVACCVKLRALTDFFRRRDHLQQGIVNFMYEDFLQGTMT 219
>ref|NP_079894.2| sorcin isoform 2 [Mus musculus].
Length = 183
Score = 105 bits (262), Expect = 1e-22
Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 4/161 (2%)
Frame = +2
Query: 413 YSWFQSVDSDHSGYISIKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYG 580
Y +F +V + G I EL++ L S + FN ETC +M+++ D+ +G +
Sbjct: 21 YGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNE 79
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 760
F LW + W+ F +D D SG++ ELQ+AL+ MG+ LSPQ + RY S +
Sbjct: 80 FKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQTVNSVAKRY---STS 136
Query: 761 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFV 883
+ D +I C +L+ LT++FR +D+ QG + S++DF+
Sbjct: 137 GKITFDDYIACCVKLRALTDSFRRRDSGQQGVVNFSYDDFI 177
>ref|NP_001074443.1| sorcin isoform 1 [Mus musculus].
Length = 198
Score = 105 bits (262), Expect = 1e-22
Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 4/161 (2%)
Frame = +2
Query: 413 YSWFQSVDSDHSGYISIKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYG 580
Y +F +V + G I EL++ L S + FN ETC +M+++ D+ +G +
Sbjct: 36 YGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNE 94
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 760
F LW + W+ F +D D SG++ ELQ+AL+ MG+ LSPQ + RY S +
Sbjct: 95 FKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQTVNSVAKRY---STS 151
Query: 761 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFV 883
+ D +I C +L+ LT++FR +D+ QG + S++DF+
Sbjct: 152 GKITFDDYIACCVKLRALTDSFRRRDSGQQGVVNFSYDDFI 192
>ref|NP_001013789.1| calpain-11 [Mus musculus].
Length = 714
Score = 84.0 bits (206), Expect = 3e-16
Identities = 42/144 (29%), Positives = 79/144 (54%)
Frame = +2
Query: 461 IKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDR 640
+ + L N F+ E C MINL DK +G+++++ F LWK I++W +F++ D
Sbjct: 571 LNRMTAKLRNFKTKGFSLEVCRRMINLLDKDGSGKLELHEFQVLWKKIKKWTEIFKECDE 630
Query: 641 DHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTE 820
D SG+++ E++ A+ + G ++ + T+++V+RY S N + D F+ +L+ +
Sbjct: 631 DRSGNLNSYEMRLAIEKAGIKMNNRVTEVVVARY---SDNMIVDFDSFLNCFLRLKAMFA 687
Query: 821 AFREKDTAVQGNIRLSFEDFVTMT 892
F DT G+I L ++ +T
Sbjct: 688 FFLSMDTKKTGSICLDINQWLQIT 711
>ref|NP_001103231.1| calpain-3 isoform b [Mus musculus].
Length = 709
Score = 82.0 bits (201), Expect = 1e-15
Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Frame = +2
Query: 461 IKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQ 628
+K + +VN + F E+C MI L D +GR+++ F LWK I+ W+ +F+
Sbjct: 561 LKNVLNTVVNKHKDLKTQGFTLESCRSMIALMDTDGSGRLNLQEFHHLWKKIKAWQKIFK 620
Query: 629 QYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQ 808
YD DHSG+I+ E++ A++ G++L+ Q ++ RY + N + D FI +L+
Sbjct: 621 HYDTDHSGTINSYEMRNAVNDAGFHLNSQLYDIITMRYADKHMN--IDFDSFICCFVRLE 678
Query: 809 VLTEAFREKDTAVQGNIRLSFEDFVTMT 892
+ AF D G I+L+ +++ +T
Sbjct: 679 GMFRAFNAFDKDGDGIIKLNVLEWLQLT 706
>ref|NP_001171270.1| calpain-3 isoform c [Mus musculus].
Length = 729
Score = 82.0 bits (201), Expect = 1e-15
Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Frame = +2
Query: 461 IKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQ 628
+K + +VN + F E+C MI L D +GR+++ F LWK I+ W+ +F+
Sbjct: 581 LKNVLNTVVNKHKDLKTQGFTLESCRSMIALMDTDGSGRLNLQEFHHLWKKIKAWQKIFK 640
Query: 629 QYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQ 808
YD DHSG+I+ E++ A++ G++L+ Q ++ RY + N + D FI +L+
Sbjct: 641 HYDTDHSGTINSYEMRNAVNDAGFHLNSQLYDIITMRYADKHMN--IDFDSFICCFVRLE 698
Query: 809 VLTEAFREKDTAVQGNIRLSFEDFVTMT 892
+ AF D G I+L+ +++ +T
Sbjct: 699 GMFRAFNAFDKDGDGIIKLNVLEWLQLT 726
>ref|NP_031627.2| calpain-3 isoform a [Mus musculus].
Length = 821
Score = 82.0 bits (201), Expect = 1e-15
Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Frame = +2
Query: 461 IKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQ 628
+K + +VN + F E+C MI L D +GR+++ F LWK I+ W+ +F+
Sbjct: 673 LKNVLNTVVNKHKDLKTQGFTLESCRSMIALMDTDGSGRLNLQEFHHLWKKIKAWQKIFK 732
Query: 629 QYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQ 808
YD DHSG+I+ E++ A++ G++L+ Q ++ RY + N + D FI +L+
Sbjct: 733 HYDTDHSGTINSYEMRNAVNDAGFHLNSQLYDIITMRYADKHMN--IDFDSFICCFVRLE 790
Query: 809 VLTEAFREKDTAVQGNIRLSFEDFVTMT 892
+ AF D G I+L+ +++ +T
Sbjct: 791 GMFRAFNAFDKDGDGIIKLNVLEWLQLT 818
>ref|NP_081388.1| calpain small subunit 2 [Mus musculus].
Length = 247
Score = 80.9 bits (198), Expect = 3e-15
Identities = 39/129 (30%), Positives = 70/129 (54%)
Frame = +2
Query: 506 FNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQAL 685
F+ +TC ++++ D TG++ F LW I++W+ +F+QYD DHSGS+ ++L A+
Sbjct: 118 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVFKQYDSDHSGSLGSSQLHGAM 177
Query: 686 SQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRL 865
G+ L+ Q ++V RY M + FI +L + AF+ D G I++
Sbjct: 178 QAAGFQLNEQLYLMIVRRYADEDG--GMDFNNFISCLVRLDAMFRAFKALDRDRDGLIQV 235
Query: 866 SFEDFVTMT 892
S +++ +T
Sbjct: 236 SIREWLQLT 244
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 54,180,760
Number of extensions: 1532391
Number of successful extensions: 6626
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 6584
Number of HSP's successfully gapped: 17
Length of query: 545
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 439
Effective length of database: 12,433,743
Effective search space: 5458413177
Effective search space used: 5458413177
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002294
(1635 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356316.1| PREDICTED: peflin-like isoform 2 [Sus scrofa]. 349 2e-96
Alignment gi|XP_003127816.2| PREDICTED: peflin-like isoform 1 [Sus scrofa]. 349 2e-96
Alignment gi|XP_003130171.1| PREDICTED: sorcin-like isoform 2 [Sus scrofa]. 109 5e-24
Alignment gi|XP_003130170.1| PREDICTED: sorcin-like isoform 1 [Sus scrofa]. 109 5e-24
Alignment gi|XP_003362187.1| PREDICTED: programmed cell death protein 6-l... 99 9e-21
Alignment gi|XP_001927444.1| PREDICTED: calpain-11 [Sus scrofa]. 85 1e-16
Alignment gi|XP_003127026.1| PREDICTED: calpain small subunit 2-like [Sus... 81 1e-15
Alignment gi|NP_999483.1| calpain small subunit 1 [Sus scrofa]. 79 1e-14
Alignment gi|NP_999336.1| calpain-3 [Sus scrofa]. 78 1e-14
Alignment gi|XP_001927273.1| PREDICTED: calpain-9 isoform 2 [Sus scrofa]. 75 1e-13
>ref|XP_003356316.1| PREDICTED: peflin-like isoform 2 [Sus scrofa].
Length = 198
Score = 349 bits (896), Expect = 2e-96
Identities = 171/171 (100%), Positives = 171/171 (100%)
Frame = +2
Query: 395 NVDPEAYSWFQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDV 574
NVDPEAYSWFQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDV
Sbjct: 28 NVDPEAYSWFQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDV 87
Query: 575 YGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRS 754
YGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRS
Sbjct: 88 YGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRS 147
Query: 755 ANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML 907
ANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML
Sbjct: 148 ANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML 198
>ref|XP_003127816.2| PREDICTED: peflin-like isoform 1 [Sus scrofa].
Length = 289
Score = 349 bits (896), Expect = 2e-96
Identities = 171/171 (100%), Positives = 171/171 (100%)
Frame = +2
Query: 395 NVDPEAYSWFQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDV 574
NVDPEAYSWFQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDV
Sbjct: 119 NVDPEAYSWFQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDV 178
Query: 575 YGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRS 754
YGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRS
Sbjct: 179 YGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRS 238
Query: 755 ANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML 907
ANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML
Sbjct: 239 ANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTASRML 289
>ref|XP_003130171.1| PREDICTED: sorcin-like isoform 2 [Sus scrofa].
Length = 183
Score = 109 bits (272), Expect = 5e-24
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 4/166 (2%)
Frame = +2
Query: 413 YSWFQSVDSDHSGYISIKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYG 580
Y +F +V + G I EL++ L S + FN ETC +M+++ D+ +G +
Sbjct: 21 YGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNE 79
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 760
F LW + W+ F +D D SG++ ELQ+AL+ MG+ LSPQ + RY S N
Sbjct: 80 FKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY---STN 136
Query: 761 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 898
+ D +I C +L+ LT++FR +DTA QG + ++DF+ S
Sbjct: 137 GKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMS 182
>ref|XP_003130170.1| PREDICTED: sorcin-like isoform 1 [Sus scrofa].
Length = 199
Score = 109 bits (272), Expect = 5e-24
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 4/166 (2%)
Frame = +2
Query: 413 YSWFQSVDSDHSGYISIKELKQALVNSN----WSSFNDETCLMMINLFDKTKTGRIDVYG 580
Y +F +V + G I EL++ L S + FN ETC +M+++ D+ +G +
Sbjct: 37 YGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNE 95
Query: 581 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 760
F LW + W+ F +D D SG++ ELQ+AL+ MG+ LSPQ + RY S N
Sbjct: 96 FKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY---STN 152
Query: 761 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 898
+ D +I C +L+ LT++FR +DTA QG + ++DF+ S
Sbjct: 153 GKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMS 198
>ref|XP_003362187.1| PREDICTED: programmed cell death protein 6-like [Sus scrofa].
Length = 121
Score = 98.6 bits (244), Expect = 9e-21
Identities = 49/120 (40%), Positives = 73/120 (60%)
Frame = +2
Query: 539 LFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQF 718
+FD+ ++ F+ +WK+I W+N+F+ YDRD+SG I EL+QALS GY LS QF
Sbjct: 1 MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQF 60
Query: 719 TQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 898
+L+ ++ R + D FIQ C LQ LT+ FR DT G I++S+E +++M S
Sbjct: 61 HDILIRKF-DRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 119
>ref|XP_001927444.1| PREDICTED: calpain-11 [Sus scrofa].
Length = 713
Score = 85.1 bits (209), Expect = 1e-16
Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
Frame = +2
Query: 398 VDPEAYSWFQSVDSDHSGYISIKELKQALVNSNWSSFND--------ETCLMMINLFDKT 553
+D FQ V I + EL Q L+N S F + C MINL DK
Sbjct: 541 IDQNFLHLFQIVAGGEDKEIGVYEL-QKLLNKVASKFRHLKTKGFSLDVCRCMINLLDKD 599
Query: 554 KTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLV 733
+G++ + F LW+ I++W ++FQ+ D+DHSG+++ E++ A+ + G LS + TQ+LV
Sbjct: 600 SSGKLGLQEFQILWRKIKKWTDIFQECDQDHSGTLNSYEMRLAIERAGIKLSNKVTQVLV 659
Query: 734 SRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMT 892
+RY + + + D FI +L+ + F D G I L+ ++ +T
Sbjct: 660 ARYA--NDDMILDFDSFISCFLRLKAMFTYFLTMDPNNTGQICLNLNQWLQIT 710
>ref|XP_003127026.1| PREDICTED: calpain small subunit 2-like [Sus scrofa].
Length = 246
Score = 81.3 bits (199), Expect = 1e-15
Identities = 38/129 (29%), Positives = 71/129 (55%)
Frame = +2
Query: 506 FNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQAL 685
F+ +TC ++++ D TG++ F LW I++W+ +++QYDRD SGS+ ++++ AL
Sbjct: 117 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCIYKQYDRDQSGSLGSSQVRGAL 176
Query: 686 SQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRL 865
G+ L+ Q Q ++ RY M + FI +L + AFR D G I++
Sbjct: 177 QAAGFQLNEQLYQTIIRRYAEEDGR--MDFNSFISCLVRLDAMFRAFRSLDRDADGLIQV 234
Query: 866 SFEDFVTMT 892
++++ +T
Sbjct: 235 YIQEWLQLT 243
>ref|NP_999483.1| calpain small subunit 1 [Sus scrofa].
Length = 266
Score = 78.6 bits (192), Expect = 1e-14
Identities = 37/129 (28%), Positives = 68/129 (52%)
Frame = +2
Query: 506 FNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQAL 685
F +TC M+ + D TG++ F LW I++W+ +++Q+D D SG+I +EL A
Sbjct: 137 FGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAF 196
Query: 686 SQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRL 865
G++L+ +++ RY N M D FI +L + AF+ D G I++
Sbjct: 197 EAAGFHLNEHLYSMIIRRYSDEGGN--MDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQV 254
Query: 866 SFEDFVTMT 892
+ ++++ +T
Sbjct: 255 NIQEWLQLT 263
>ref|NP_999336.1| calpain-3 [Sus scrofa].
Length = 821
Score = 78.2 bits (191), Expect = 1e-14
Identities = 41/129 (31%), Positives = 72/129 (55%)
Frame = +2
Query: 506 FNDETCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQAL 685
F E+C MI L D +GR+++ F LWK I+ W+ +F+ YD D SG+I+ E++ A+
Sbjct: 692 FTLESCRSMIALMDTDGSGRLNLQEFHHLWKKIKSWQKIFKHYDTDQSGTINSYEMRNAV 751
Query: 686 SQMGYNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRL 865
+ G++L+ Q ++ RY + N + D FI +L+ + AF D G I+L
Sbjct: 752 NDAGFHLNNQLYDIITMRYADKYMN--IDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKL 809
Query: 866 SFEDFVTMT 892
+ +++ +T
Sbjct: 810 NVLEWLQLT 818
>ref|XP_001927273.1| PREDICTED: calpain-9 isoform 2 [Sus scrofa].
Length = 664
Score = 75.1 bits (183), Expect = 1e-13
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Frame = +2
Query: 518 TCLMMINLFDKTKTGRIDVYGFSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMG 697
+C +I+L D + G+++ F W +++W +LF Q+D D SG++S EL+ AL G
Sbjct: 539 SCKNIISLMDTSGNGKLEFSEFKVFWDKLKKWMSLFLQFDADKSGTMSSYELRSALKAAG 598
Query: 698 YNLSPQFTQLLVSRYCPRSANPAMQL--DRFIQVCTQLQVLTEAFREKDTAVQGNIRLSF 871
+ LS QL+V RY A+P +QL D F+ +L+ + F+ T + I L+
Sbjct: 599 FQLSSPLLQLIVLRY----ADPELQLGFDDFLNCLVRLENASRMFQALSTKNKEFIHLNI 654
Query: 872 EDFVTMT 892
+F+ +T
Sbjct: 655 NEFIVLT 661
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,579,675
Number of extensions: 1179928
Number of successful extensions: 5302
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 5280
Number of HSP's successfully gapped: 14
Length of query: 545
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 441
Effective length of database: 8,754,644
Effective search space: 3860798004
Effective search space used: 3860798004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002294
(1635 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1695 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1695 bits (855), Expect = 0.0
Identities = 873/878 (99%), Gaps = 1/878 (0%)
Strand = Plus / Minus
Query: 679 agctctgtcccagatgggctacaacctcagcccccagttcacccagctcctggtttcccg 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81868229 agctctgtcccagatgggctacaacctcagcccccagttcacccagctcctggtttcccg 81868170
Query: 739 ctactgcccgcgctccgccaatcccgccatgcagctcgatcgcttcatccaggtgtgcac 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81868169 ctactgcccgcgctccgccaatcccgccatgcagctcgatcgcttcatccaggtgtgcac 81868110
Query: 799 ccagctgcaggtgctgactgaggccttccgggagaaggacaccgctgtgcagggcaacat 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81868109 ccagctgcaggtgctgactgaggccttccgggagaaggacaccgctgtgcagggcaacat 81868050
Query: 859 tcggctcagcttcgaggacttcgtcaccatgacagcctctcggatgctatgaccaggcca 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81868049 tcggctcagcttcgaggacttcgtcaccatgacagcctctcggatgctatgaccaggcca 81867990
Query: 919 tctgtggagtggggagtgcaccaggggtcctttcctggctcctagggtgggagaagcatg 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81867989 tctgtggagtggggagtgcaccaggggtcctttcctggctcctagggtgggagaagcatg 81867930
Query: 979 taggcctcgcttcttttcttgcccctcccagaaaaagaattttccttgcctgatgcagca 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81867929 taggcctcgcttcttttcttgcccctcccagaaaaagaattttccttgcctgatgcagca 81867870
Query: 1039 ctgttcccaaagagggcagagagtccttcgtcttagccaccaaatagtaggctgaggcca 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81867869 ctgttcccaaagagggcagagagtccttcgtcttagccaccaaatagtaggctgaggcca 81867810
Query: 1099 cacaggtatgggcctgacctaggagaggactggaagttgaatgtccttacagccctgaga 1158
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81867809 cacaggtatgggcctgacctaggagaggactggaagttgaatgtccttacagccctgagc 81867750
Query: 1159 attgaagtggtgcaggagatgctggtcattgcagcagaattagtgtccagtcagctggct 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81867749 attgaagtggtgcaggagatgctggtcattgcagcagaattagtgtccagtcagctggct 81867690
Query: 1219 ccagccgctagctttcctttctgtgccctgatgccagtggtaagtggtcatcggccttgt 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81867689 ccagccgctagctttcctttctgtgccctgatgccagtggtaagtggtcatcggccttgt 81867630
Query: 1279 accattagcacctgcgtccctctcctctgctgccagatgaacctcgtttctccaaagtgg 1338
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 81867629 accattagcacctgcgtccct-tcctctgctgccagatgaacctcgtttctccaaagtgg 81867571
Query: 1339 aatccgaccagagatttgcccatgggaccagtggctcggattccactcccacaggtccgt 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81867570 aatccgaccagagatttgcccatgggaccagtggctcggattccactcccacaggtccgt 81867511
Query: 1399 gggtgttgactcctagctgcctgggggctgtgcctgctcggggagctcaggcagtctgtt 1458
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 81867510 gggtgttgactcctagctgcctgggggctgtgcctgctcagggagctcaggcagtctgtt 81867451
Query: 1459 ctctgggcctctttggctaggctacccctctgcagcgtgaacccctctgcttggcttcag 1518
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 81867450 ctctgggcctctttggctaggctacccctctgcagcgtggacccctctgcttggcttcag 81867391
Query: 1519 tccccaggggacaagctaccaccccccactgccnatgc 1556
||||||||||||||||||||||||||||||||| ||||
Sbjct: 81867390 tccccaggggacaagctaccaccccccactgccaatgc 81867353
Score = 597 bits (301), Expect = e-168
Identities = 315/322 (97%)
Strand = Plus / Minus
Query: 61 gcagggctgcccaggagccggaggacaagcgcccggagcccctcctggtagctactaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81875561 gcagggctgcccaggagccggaggacaagcgcccggagcccctcctggtagctactaccc 81875502
Query: 121 cggannnnnnnatggtggagggcagtatggtagtggggtaccccctggaggcggatatgg 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81875501 cggacccccccatggtggagggcagtatggtagtggggtaccccctggaggcggatatgg 81875442
Query: 181 aggaggtcctgcccctggagggccttacggaccaccagctggtggaggaccctatggaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81875441 aggaggtcctgcccctggagggccttacggaccaccagctggtggaggaccctatggaca 81875382
Query: 241 ccccagccctgggggactcccctctggcactccaggaggaccatatggtggtgcggctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81875381 ccccagccctgggggactcccctctggcactccaggaggaccatatggtggtgcggctcc 81875322
Query: 301 agggggcccctatggtcagccacctccaagttcctatggtgcccagcatcccggccctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81875321 agggggcccctatggtcagccacctccaagttcctatggtgcccagcatcccggccctta 81875262
Query: 361 cggacagggacctcctccaggt 382
||||||||||||||||||||||
Sbjct: 81875261 cggacagggacctcctccaggt 81875240
Score = 317 bits (160), Expect = 1e-83
Identities = 163/164 (99%)
Strand = Plus / Minus
Query: 373 tcctccaggtggagcccctcccaatgtggaccccgaggcttactcctggttccagtcggt 432
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81870643 tcctgcaggtggagcccctcccaatgtggaccccgaggcttactcctggttccagtcggt 81870584
Query: 433 ggactctgatcacagtggctacatctccatcaaggagctgaagcaggccctggtcaactc 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81870583 ggactctgatcacagtggctacatctccatcaaggagctgaagcaggccctggtcaactc 81870524
Query: 493 caactggtcctcattcaacgacgagacgtgcctcatgatgataa 536
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81870523 caactggtcctcattcaacgacgagacgtgcctcatgatgataa 81870480
Score = 285 bits (144), Expect = 4e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 537 acctgtttgacaagaccaagacaggccgcatcgacgtctacggcttctcggccctgtgga 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81870009 acctgtttgacaagaccaagacaggccgcatcgacgtctacggcttctcggccctgtgga 81869950
Query: 597 aattcatccagcagtggaagaacctcttccagcagtatgaccgggaccactcaggctcca 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81869949 aattcatccagcagtggaagaacctcttccagcagtatgaccgggaccactcaggctcca 81869890
Query: 657 ttagctacacagagctgcagcaag 680
||||||||||||||||||||||||
Sbjct: 81869889 ttagctacacagagctgcagcaag 81869866
Score = 121 bits (61), Expect = 1e-24
Identities = 64/65 (98%)
Strand = Plus / Minus
Query: 1 gaagccccgccccccgccgacgtgtgacgtcagaatcgccatggccagctatccatacgg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 81885402 gaagccccgccccccgccgacgtgtgacgtcagagtcgccatggccagctatccatacgg 81885343
Query: 61 gcagg 65
|||||
Sbjct: 81885342 gcagg 81885338
Score = 121 bits (61), Expect = 1e-24
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 1 gaagccccgccccccgccgacgtgtgacgtcagaatcgccatggccagctatccatacgg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 82072237 gaagccccgccccccgccgacgtgtgacgtcagagtcgccatggccagctatccatacgg 82072296
Query: 61 gcagg 65
|||||
Sbjct: 82072297 gcagg 82072301
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,985,560
Number of extensions: 274
Number of successful extensions: 274
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 7
Length of query: 1635
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1613
Effective length of database: 2,808,408,574
Effective search space: 4529963029862
Effective search space used: 4529963029862
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)