Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002296
(1597 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029730.1| dynactin subunit 2 [Bos taurus]. 696 0.0
>ref|NP_001029730.1| dynactin subunit 2 [Bos taurus].
Length = 403
Score = 696 bits (1795), Expect = 0.0
Identities = 362/403 (89%), Positives = 366/403 (90%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 435
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK
Sbjct: 1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 60
Query: 436 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI 615
RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI
Sbjct: 61 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI 120
Query: 616 KMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAKRLLLQ 795
K TVKESATEEKLTP SHLEKLLGPDAAINLTDPDGALAKRLLLQ
Sbjct: 121 KTTVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLLLQ 180
Query: 796 LEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV 975
LE PPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV
Sbjct: 181 LEATKNSKGTGSGGKTTSGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV 240
Query: 976 RCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKA 1155
RCDQDAQNPLSAGLQGACLM+TVELLQAKV ALDLAVLDQVEARLQSVLGKVNEIAKHKA
Sbjct: 241 RCDQDAQNPLSAGLQGACLMDTVELLQAKVGALDLAVLDQVEARLQSVLGKVNEIAKHKA 300
Query: 1156 SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ 1335
SVEDADTQSKVHQLYETIQRWSPIA++LPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ
Sbjct: 301 SVEDADTQSKVHQLYETIQRWSPIAASLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ 360
Query: 1336 MIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
MIACSLKDNATLLTQVQTTM ENLST+EGNFANIDERMKKLGK
Sbjct: 361 MIACSLKDNATLLTQVQTTMCENLSTIEGNFANIDERMKKLGK 403
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,935,935
Number of extensions: 1452700
Number of successful extensions: 6625
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6570
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 425
Effective length of database: 14,140,958
Effective search space: 6009907150
Effective search space used: 6009907150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002296
(1597 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859072.1| PREDICTED: similar to Dynactin subunit 2 (Dynac... 688 0.0
Alignment gi|XP_859374.1| PREDICTED: similar to dynactin 2 isoform 11 [Ca... 683 0.0
Alignment gi|XP_859518.1| PREDICTED: similar to dynactin 2 isoform 14 [Ca... 683 0.0
Alignment gi|XP_849674.1| PREDICTED: similar to dynactin 2 isoform 2 [Can... 682 0.0
Alignment gi|XP_859339.1| PREDICTED: similar to Dynactin subunit 2 (Dynac... 678 0.0
Alignment gi|XP_859481.1| PREDICTED: similar to Dynactin subunit 2 (Dynac... 664 0.0
Alignment gi|XP_859223.1| PREDICTED: similar to dynactin 2 isoform 7 [Can... 657 0.0
Alignment gi|XP_531647.2| PREDICTED: similar to Dynactin subunit 2 (Dynac... 630 e-180
Alignment gi|XP_859410.1| PREDICTED: similar to Dynactin subunit 2 (Dynac... 628 e-180
Alignment gi|XP_851162.1| PREDICTED: similar to Dynactin subunit 2 (Dynac... 572 e-163
>ref|XP_859072.1| PREDICTED: similar to Dynactin subunit 2 (Dynactin complex 50 kDa
subunit) (50 kDa dynein-associated polypeptide) (p50
dynamitin) (DCTN-50) isoform 3 [Canis familiaris].
Length = 403
Score = 688 bits (1775), Expect = 0.0
Identities = 359/403 (89%), Positives = 364/403 (90%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 435
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK
Sbjct: 1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 60
Query: 436 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI 615
RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI
Sbjct: 61 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI 120
Query: 616 KMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAKRLLLQ 795
K +VKESATEEKLTP SHLEKLLGPDAAINLTDPDGALAKRLLLQ
Sbjct: 121 KTSVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLLLQ 180
Query: 796 LEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV 975
LE P DS+LVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV
Sbjct: 181 LEATKNSKGTGSGGKTTGGTPVDSNLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV 240
Query: 976 RCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKA 1155
RCDQDAQNPLSAGLQGACLMETVELLQAKV+ALDLAVLDQVEARLQSVLGKVNEIAKHKA
Sbjct: 241 RCDQDAQNPLSAGLQGACLMETVELLQAKVNALDLAVLDQVEARLQSVLGKVNEIAKHKA 300
Query: 1156 SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ 1335
SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ
Sbjct: 301 SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ 360
Query: 1336 MIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
MIA SLKDN LLTQVQTTMRENLST+EGNFANIDERMK+LGK
Sbjct: 361 MIASSLKDNTALLTQVQTTMRENLSTIEGNFANIDERMKQLGK 403
>ref|XP_859374.1| PREDICTED: similar to dynactin 2 isoform 11 [Canis familiaris].
Length = 404
Score = 683 bits (1763), Expect = 0.0
Identities = 359/404 (88%), Positives = 364/404 (90%), Gaps = 1/404 (0%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDA-EELTSTSVEHIIVNPNAAYDKFKD 432
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDA EELTSTSVEHIIVNPNAAYDKFKD
Sbjct: 1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDALEELTSTSVEHIIVNPNAAYDKFKD 60
Query: 433 KRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEK 612
KRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEK
Sbjct: 61 KRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEK 120
Query: 613 IKMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAKRLLL 792
IK +VKESATEEKLTP SHLEKLLGPDAAINLTDPDGALAKRLLL
Sbjct: 121 IKTSVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLLL 180
Query: 793 QLEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEAT 972
QLE P DS+LVTYELHSRPEQDKFSQAAKVAELEKRLTELEAT
Sbjct: 181 QLEATKNSKGTGSGGKTTGGTPVDSNLVTYELHSRPEQDKFSQAAKVAELEKRLTELEAT 240
Query: 973 VRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHK 1152
VRCDQDAQNPLSAGLQGACLMETVELLQAKV+ALDLAVLDQVEARLQSVLGKVNEIAKHK
Sbjct: 241 VRCDQDAQNPLSAGLQGACLMETVELLQAKVNALDLAVLDQVEARLQSVLGKVNEIAKHK 300
Query: 1153 ASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQ 1332
ASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQ
Sbjct: 301 ASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQ 360
Query: 1333 QMIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
QMIA SLKDN LLTQVQTTMRENLST+EGNFANIDERMK+LGK
Sbjct: 361 QMIASSLKDNTALLTQVQTTMRENLSTIEGNFANIDERMKQLGK 404
>ref|XP_859518.1| PREDICTED: similar to dynactin 2 isoform 14 [Canis familiaris].
Length = 405
Score = 683 bits (1762), Expect = 0.0
Identities = 359/405 (88%), Positives = 364/405 (89%), Gaps = 2/405 (0%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAE--ELTSTSVEHIIVNPNAAYDKFK 429
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAE ELTSTSVEHIIVNPNAAYDKFK
Sbjct: 1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAELEELTSTSVEHIIVNPNAAYDKFK 60
Query: 430 DKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVE 609
DKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVE
Sbjct: 61 DKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVE 120
Query: 610 KIKMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAKRLL 789
KIK +VKESATEEKLTP SHLEKLLGPDAAINLTDPDGALAKRLL
Sbjct: 121 KIKTSVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLL 180
Query: 790 LQLEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEA 969
LQLE P DS+LVTYELHSRPEQDKFSQAAKVAELEKRLTELEA
Sbjct: 181 LQLEATKNSKGTGSGGKTTGGTPVDSNLVTYELHSRPEQDKFSQAAKVAELEKRLTELEA 240
Query: 970 TVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKH 1149
TVRCDQDAQNPLSAGLQGACLMETVELLQAKV+ALDLAVLDQVEARLQSVLGKVNEIAKH
Sbjct: 241 TVRCDQDAQNPLSAGLQGACLMETVELLQAKVNALDLAVLDQVEARLQSVLGKVNEIAKH 300
Query: 1150 KASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTT 1329
KASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTT
Sbjct: 301 KASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTT 360
Query: 1330 QQMIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
QQMIA SLKDN LLTQVQTTMRENLST+EGNFANIDERMK+LGK
Sbjct: 361 QQMIASSLKDNTALLTQVQTTMRENLSTIEGNFANIDERMKQLGK 405
>ref|XP_849674.1| PREDICTED: similar to dynactin 2 isoform 2 [Canis familiaris].
Length = 408
Score = 682 bits (1759), Expect = 0.0
Identities = 359/408 (87%), Positives = 364/408 (89%), Gaps = 5/408 (1%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDA-----EELTSTSVEHIIVNPNAAYD 420
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDA EELTSTSVEHIIVNPNAAYD
Sbjct: 1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAFAQELEELTSTSVEHIIVNPNAAYD 60
Query: 421 KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT 600
KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT
Sbjct: 61 KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT 120
Query: 601 EVEKIKMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAK 780
EVEKIK +VKESATEEKLTP SHLEKLLGPDAAINLTDPDGALAK
Sbjct: 121 EVEKIKTSVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAK 180
Query: 781 RLLLQLEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTE 960
RLLLQLE P DS+LVTYELHSRPEQDKFSQAAKVAELEKRLTE
Sbjct: 181 RLLLQLEATKNSKGTGSGGKTTGGTPVDSNLVTYELHSRPEQDKFSQAAKVAELEKRLTE 240
Query: 961 LEATVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEI 1140
LEATVRCDQDAQNPLSAGLQGACLMETVELLQAKV+ALDLAVLDQVEARLQSVLGKVNEI
Sbjct: 241 LEATVRCDQDAQNPLSAGLQGACLMETVELLQAKVNALDLAVLDQVEARLQSVLGKVNEI 300
Query: 1141 AKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHL 1320
AKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHL
Sbjct: 301 AKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHL 360
Query: 1321 DTTQQMIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
DTTQQMIA SLKDN LLTQVQTTMRENLST+EGNFANIDERMK+LGK
Sbjct: 361 DTTQQMIASSLKDNTALLTQVQTTMRENLSTIEGNFANIDERMKQLGK 408
>ref|XP_859339.1| PREDICTED: similar to Dynactin subunit 2 (Dynactin complex 50 kDa
subunit) (50 kDa dynein-associated polypeptide) (p50
dynamitin) (DCTN-50) isoform 10 [Canis familiaris].
Length = 417
Score = 678 bits (1750), Expect = 0.0
Identities = 359/417 (86%), Positives = 364/417 (87%), Gaps = 14/417 (3%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAE--------------ELTSTSVEHI 393
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAE ELTSTSVEHI
Sbjct: 1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAELVRSLTFHLLFNGEELTSTSVEHI 60
Query: 394 IVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRL 573
IVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRL
Sbjct: 61 IVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRL 120
Query: 574 LHEVQELTTEVEKIKMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINL 753
LHEVQELTTEVEKIK +VKESATEEKLTP SHLEKLLGPDAAINL
Sbjct: 121 LHEVQELTTEVEKIKTSVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINL 180
Query: 754 TDPDGALAKRLLLQLEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKV 933
TDPDGALAKRLLLQLE P DS+LVTYELHSRPEQDKFSQAAKV
Sbjct: 181 TDPDGALAKRLLLQLEATKNSKGTGSGGKTTGGTPVDSNLVTYELHSRPEQDKFSQAAKV 240
Query: 934 AELEKRLTELEATVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQ 1113
AELEKRLTELEATVRCDQDAQNPLSAGLQGACLMETVELLQAKV+ALDLAVLDQVEARLQ
Sbjct: 241 AELEKRLTELEATVRCDQDAQNPLSAGLQGACLMETVELLQAKVNALDLAVLDQVEARLQ 300
Query: 1114 SVLGKVNEIAKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAM 1293
SVLGKVNEIAKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAM
Sbjct: 301 SVLGKVNEIAKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAM 360
Query: 1294 QFGQLLTHLDTTQQMIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
QFGQLLTHLDTTQQMIA SLKDN LLTQVQTTMRENLST+EGNFANIDERMK+LGK
Sbjct: 361 QFGQLLTHLDTTQQMIASSLKDNTALLTQVQTTMRENLSTIEGNFANIDERMKQLGK 417
>ref|XP_859481.1| PREDICTED: similar to Dynactin subunit 2 (Dynactin complex 50 kDa
subunit) (50 kDa dynein-associated polypeptide) (p50
dynamitin) (DCTN-50) isoform 13 [Canis familiaris].
Length = 395
Score = 664 bits (1712), Expect = 0.0
Identities = 351/403 (87%), Positives = 356/403 (88%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 435
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK
Sbjct: 1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 60
Query: 436 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI 615
RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI
Sbjct: 61 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI 120
Query: 616 KMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAKRLLLQ 795
K +VKESATEEKLTP SHLEKLLGPDAAINLTDPDGALAKRLLLQ
Sbjct: 121 KTSVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLLLQ 180
Query: 796 LEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV 975
LE P DS+LVTYELHSRPEQDKFSQAAKVAELEKRLTELEAT
Sbjct: 181 LEATKNSKGTGSGGKTTGGTPVDSNLVTYELHSRPEQDKFSQAAKVAELEKRLTELEAT- 239
Query: 976 RCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKA 1155
NPLSAGLQGACLMETVELLQAKV+ALDLAVLDQVEARLQSVLGKVNEIAKHKA
Sbjct: 240 -------NPLSAGLQGACLMETVELLQAKVNALDLAVLDQVEARLQSVLGKVNEIAKHKA 292
Query: 1156 SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ 1335
SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ
Sbjct: 293 SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ 352
Query: 1336 MIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
MIA SLKDN LLTQVQTTMRENLST+EGNFANIDERMK+LGK
Sbjct: 353 MIASSLKDNTALLTQVQTTMRENLSTIEGNFANIDERMKQLGK 395
>ref|XP_859223.1| PREDICTED: similar to dynactin 2 isoform 7 [Canis familiaris].
Length = 400
Score = 657 bits (1696), Expect = 0.0
Identities = 351/408 (86%), Positives = 356/408 (87%), Gaps = 5/408 (1%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDA-----EELTSTSVEHIIVNPNAAYD 420
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDA EELTSTSVEHIIVNPNAAYD
Sbjct: 1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAFAQELEELTSTSVEHIIVNPNAAYD 60
Query: 421 KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT 600
KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT
Sbjct: 61 KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT 120
Query: 601 EVEKIKMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAK 780
EVEKIK +VKESATEEKLTP SHLEKLLGPDAAINLTDPDGALAK
Sbjct: 121 EVEKIKTSVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAK 180
Query: 781 RLLLQLEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTE 960
RLLLQLE P DS+LVTYELHSRPEQDKFSQAAKVAELEKRLTE
Sbjct: 181 RLLLQLEATKNSKGTGSGGKTTGGTPVDSNLVTYELHSRPEQDKFSQAAKVAELEKRLTE 240
Query: 961 LEATVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEI 1140
LEAT NPLSAGLQGACLMETVELLQAKV+ALDLAVLDQVEARLQSVLGKVNEI
Sbjct: 241 LEAT--------NPLSAGLQGACLMETVELLQAKVNALDLAVLDQVEARLQSVLGKVNEI 292
Query: 1141 AKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHL 1320
AKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHL
Sbjct: 293 AKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHL 352
Query: 1321 DTTQQMIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
DTTQQMIA SLKDN LLTQVQTTMRENLST+EGNFANIDERMK+LGK
Sbjct: 353 DTTQQMIASSLKDNTALLTQVQTTMRENLSTIEGNFANIDERMKQLGK 400
>ref|XP_531647.2| PREDICTED: similar to Dynactin subunit 2 (Dynactin complex 50 kDa
subunit) (50 kDa dynein-associated polypeptide) (p50
dynamitin) (DCTN-50) isoform 1 [Canis familiaris].
Length = 379
Score = 630 bits (1624), Expect = e-180
Identities = 335/403 (83%), Positives = 340/403 (84%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 435
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK
Sbjct: 1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 60
Query: 436 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI 615
RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI
Sbjct: 61 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI 120
Query: 616 KMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAKRLLLQ 795
K +VKESATEEKLTP SHLEKLLGPDAAINLTDPDGALAKRLLLQ
Sbjct: 121 KTSVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLLLQ 180
Query: 796 LEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV 975
LE P DS+LVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV
Sbjct: 181 LEATKNSKGTGSGGKTTGGTPVDSNLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV 240
Query: 976 RCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKA 1155
RCDQDAQNPLSAGLQGACLMETVELLQAKV+ALDLAVLDQVEARLQ
Sbjct: 241 RCDQDAQNPLSAGLQGACLMETVELLQAKVNALDLAVLDQVEARLQ-------------- 286
Query: 1156 SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ 1335
VHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ
Sbjct: 287 ----------VHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ 336
Query: 1336 MIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
MIA SLKDN LLTQVQTTMRENLST+EGNFANIDERMK+LGK
Sbjct: 337 MIASSLKDNTALLTQVQTTMRENLSTIEGNFANIDERMKQLGK 379
>ref|XP_859410.1| PREDICTED: similar to Dynactin subunit 2 (Dynactin complex 50 kDa
subunit) (50 kDa dynein-associated polypeptide) (p50
dynamitin) (DCTN-50) isoform 12 [Canis familiaris].
Length = 380
Score = 628 bits (1619), Expect = e-180
Identities = 336/403 (83%), Positives = 341/403 (84%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 435
MADPKYADLPGI EELTSTSVEHIIVNPNAAYDKFKDK
Sbjct: 1 MADPKYADLPGI-----------------------EELTSTSVEHIIVNPNAAYDKFKDK 37
Query: 436 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI 615
RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI
Sbjct: 38 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI 97
Query: 616 KMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAKRLLLQ 795
K +VKESATEEKLTP SHLEKLLGPDAAINLTDPDGALAKRLLLQ
Sbjct: 98 KTSVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLLLQ 157
Query: 796 LEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV 975
LE P DS+LVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV
Sbjct: 158 LEATKNSKGTGSGGKTTGGTPVDSNLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV 217
Query: 976 RCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKA 1155
RCDQDAQNPLSAGLQGACLMETVELLQAKV+ALDLAVLDQVEARLQSVLGKVNEIAKHKA
Sbjct: 218 RCDQDAQNPLSAGLQGACLMETVELLQAKVNALDLAVLDQVEARLQSVLGKVNEIAKHKA 277
Query: 1156 SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ 1335
SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ
Sbjct: 278 SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ 337
Query: 1336 MIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
MIA SLKDN LLTQVQTTMRENLST+EGNFANIDERMK+LGK
Sbjct: 338 MIASSLKDNTALLTQVQTTMRENLSTIEGNFANIDERMKQLGK 380
>ref|XP_851162.1| PREDICTED: similar to Dynactin subunit 2 (Dynactin complex 50 kDa
subunit) (50 kDa dynein-associated polypeptide) (p50
dynamitin) (DCTN-50) [Canis familiaris].
Length = 363
Score = 572 bits (1474), Expect = e-163
Identities = 301/355 (84%), Positives = 308/355 (86%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 435
MADPKY DLPGIARNEPDVY TSDLPEDDQAEFDAEELTSTSVEHIIVN NAAYDKFKDK
Sbjct: 1 MADPKYTDLPGIARNEPDVYGTSDLPEDDQAEFDAEELTSTSVEHIIVNSNAAYDKFKDK 60
Query: 436 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI 615
RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELT EVEKI
Sbjct: 61 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTAEVEKI 120
Query: 616 KMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAKRLLLQ 795
K TVKESATEE+LTP SHLEKLLGPD AI+ TDPDGALAK LLLQ
Sbjct: 121 KTTVKESATEEELTPVVLAKQLAALKQQLVASHLEKLLGPDVAIDPTDPDGALAKCLLLQ 180
Query: 796 LEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV 975
LE P DS+LVTYELHSR EQDKFSQAAKVAELEK LTELEATV
Sbjct: 181 LEATKNSKGTGSGGKTTGGTPVDSNLVTYELHSRLEQDKFSQAAKVAELEKCLTELEATV 240
Query: 976 RCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKA 1155
RCDQDAQNPLSAGLQG CLMETVELLQAKV+ALDLAVLDQVEA+LQSVLGKVNEIAKHKA
Sbjct: 241 RCDQDAQNPLSAGLQGTCLMETVELLQAKVNALDLAVLDQVEAQLQSVLGKVNEIAKHKA 300
Query: 1156 SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHL 1320
SVEDADT+SKVHQLYETIQRWSPIA TLPELVQRLVTIKQLHEQA+QFGQLLTHL
Sbjct: 301 SVEDADTESKVHQLYETIQRWSPIACTLPELVQRLVTIKQLHEQALQFGQLLTHL 355
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,223,159
Number of extensions: 1490707
Number of successful extensions: 6716
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 6612
Number of HSP's successfully gapped: 22
Length of query: 532
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 424
Effective length of database: 15,274,216
Effective search space: 6476267584
Effective search space used: 6476267584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002296
(1597 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006391.1| dynactin subunit 2 [Homo sapiens]. 681 0.0
>ref|NP_006391.1| dynactin subunit 2 [Homo sapiens].
Length = 406
Score = 681 bits (1758), Expect = 0.0
Identities = 362/408 (88%), Positives = 364/408 (89%), Gaps = 5/408 (1%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDA-----EELTSTSVEHIIVNPNAAYD 420
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDA EELTSTSVEHIIVNPNAAYD
Sbjct: 1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAFAQELEELTSTSVEHIIVNPNAAYD 60
Query: 421 KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT 600
KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT
Sbjct: 61 KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT 120
Query: 601 EVEKIKMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAK 780
EVEKIK TVKESATEEKLTP SHLEKLLGPDAAINLTDPDGALAK
Sbjct: 121 EVEKIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAK 180
Query: 781 RLLLQLEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTE 960
RLLLQLE PPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTE
Sbjct: 181 RLLLQLEATKNSKGGSGGKTTGT--PPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTE 238
Query: 961 LEATVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEI 1140
LE VRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEI
Sbjct: 239 LETAVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEI 298
Query: 1141 AKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHL 1320
AKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHL
Sbjct: 299 AKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHL 358
Query: 1321 DTTQQMIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
DTTQQMIA SLKDN TLLTQVQTTMRENL+TVEGNFA+IDERMKKLGK
Sbjct: 359 DTTQQMIANSLKDNTTLLTQVQTTMRENLATVEGNFASIDERMKKLGK 406
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,361,513
Number of extensions: 1481603
Number of successful extensions: 6550
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6477
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 425
Effective length of database: 14,770,016
Effective search space: 6277256800
Effective search space used: 6277256800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002296
(1597 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081427.1| dynactin subunit 2 isoform 3 [Mus musculus]. 679 0.0
Alignment gi|NP_001177382.1| dynactin subunit 2 isoform 2 [Mus musculus]. 674 0.0
Alignment gi|NP_001177383.1| dynactin subunit 2 isoform 1 [Mus musculus]. 673 0.0
>ref|NP_081427.1| dynactin subunit 2 isoform 3 [Mus musculus].
Length = 402
Score = 679 bits (1752), Expect = 0.0
Identities = 355/403 (88%), Positives = 363/403 (90%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDK 435
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEEL+STSVEHIIVNPNAAYDKFKDK
Sbjct: 1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAEELSSTSVEHIIVNPNAAYDKFKDK 60
Query: 436 RVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI 615
RVGTKGLDFSDRIGKTKRTGYESG+YEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI
Sbjct: 61 RVGTKGLDFSDRIGKTKRTGYESGDYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKI 120
Query: 616 KMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAKRLLLQ 795
K TVKESATEEKLTP SHLEKLLGPDAAINL DPDGALAKRLLLQ
Sbjct: 121 KTTVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLADPDGALAKRLLLQ 180
Query: 796 LEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV 975
LE PPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV
Sbjct: 181 LEATKSSKGSSGGKATAGA-PPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATV 239
Query: 976 RCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKA 1155
RCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKA
Sbjct: 240 RCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKA 299
Query: 1156 SVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ 1335
SVEDADTQ+KVHQLYETIQRWSP+ASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ
Sbjct: 300 SVEDADTQNKVHQLYETIQRWSPVASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQ 359
Query: 1336 MIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
M+A SLKDN LLTQVQTTMRENL+TVEGNFA+ID RMK+LGK
Sbjct: 360 MMASSLKDNTALLTQVQTTMRENLATVEGNFASIDARMKRLGK 402
>ref|NP_001177382.1| dynactin subunit 2 isoform 2 [Mus musculus].
Length = 404
Score = 674 bits (1739), Expect = 0.0
Identities = 355/405 (87%), Positives = 363/405 (89%), Gaps = 2/405 (0%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAE--ELTSTSVEHIIVNPNAAYDKFK 429
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAE EL+STSVEHIIVNPNAAYDKFK
Sbjct: 1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAELEELSSTSVEHIIVNPNAAYDKFK 60
Query: 430 DKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVE 609
DKRVGTKGLDFSDRIGKTKRTGYESG+YEMLGEGLGVKETPQQKYQRLLHEVQELTTEVE
Sbjct: 61 DKRVGTKGLDFSDRIGKTKRTGYESGDYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVE 120
Query: 610 KIKMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAKRLL 789
KIK TVKESATEEKLTP SHLEKLLGPDAAINL DPDGALAKRLL
Sbjct: 121 KIKTTVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLADPDGALAKRLL 180
Query: 790 LQLEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEA 969
LQLE PPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEA
Sbjct: 181 LQLEATKSSKGSSGGKATAGA-PPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEA 239
Query: 970 TVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKH 1149
TVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKH
Sbjct: 240 TVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKH 299
Query: 1150 KASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTT 1329
KASVEDADTQ+KVHQLYETIQRWSP+ASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTT
Sbjct: 300 KASVEDADTQNKVHQLYETIQRWSPVASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTT 359
Query: 1330 QQMIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
QQM+A SLKDN LLTQVQTTMRENL+TVEGNFA+ID RMK+LGK
Sbjct: 360 QQMMASSLKDNTALLTQVQTTMRENLATVEGNFASIDARMKRLGK 404
>ref|NP_001177383.1| dynactin subunit 2 isoform 1 [Mus musculus].
Length = 407
Score = 673 bits (1736), Expect = 0.0
Identities = 355/408 (87%), Positives = 363/408 (88%), Gaps = 5/408 (1%)
Frame = +1
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDA-----EELTSTSVEHIIVNPNAAYD 420
MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDA EEL+STSVEHIIVNPNAAYD
Sbjct: 1 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDAFAQELEELSSTSVEHIIVNPNAAYD 60
Query: 421 KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT 600
KFKDKRVGTKGLDFSDRIGKTKRTGYESG+YEMLGEGLGVKETPQQKYQRLLHEVQELTT
Sbjct: 61 KFKDKRVGTKGLDFSDRIGKTKRTGYESGDYEMLGEGLGVKETPQQKYQRLLHEVQELTT 120
Query: 601 EVEKIKMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAK 780
EVEKIK TVKESATEEKLTP SHLEKLLGPDAAINL DPDGALAK
Sbjct: 121 EVEKIKTTVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLADPDGALAK 180
Query: 781 RLLLQLEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTE 960
RLLLQLE PPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTE
Sbjct: 181 RLLLQLEATKSSKGSSGGKATAGA-PPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTE 239
Query: 961 LEATVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEI 1140
LEATVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEI
Sbjct: 240 LEATVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEI 299
Query: 1141 AKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHL 1320
AKHKASVEDADTQ+KVHQLYETIQRWSP+ASTLPELVQRLVTIKQLHEQAMQFGQLLTHL
Sbjct: 300 AKHKASVEDADTQNKVHQLYETIQRWSPVASTLPELVQRLVTIKQLHEQAMQFGQLLTHL 359
Query: 1321 DTTQQMIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
DTTQQM+A SLKDN LLTQVQTTMRENL+TVEGNFA+ID RMK+LGK
Sbjct: 360 DTTQQMMASSLKDNTALLTQVQTTMRENLATVEGNFASIDARMKRLGK 407
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,788,642
Number of extensions: 1244102
Number of successful extensions: 5454
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5385
Number of HSP's successfully gapped: 3
Length of query: 532
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 426
Effective length of database: 12,433,743
Effective search space: 5296774518
Effective search space used: 5296774518
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002296
(1597 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126353.2| PREDICTED: dynactin subunit 2-like isoform 3... 722 0.0
Alignment gi|XP_003126370.1| PREDICTED: dynactin subunit 2-like [Sus scro... 551 e-157
>ref|XP_003126353.2| PREDICTED: dynactin subunit 2-like isoform 3 [Sus scrofa].
Length = 511
Score = 722 bits (1864), Expect = 0.0
Identities = 386/468 (82%), Positives = 386/468 (82%), Gaps = 5/468 (1%)
Frame = +1
Query: 76 DFCFTLPLYYPCRETXXXXXXXXXXXXXXLTWTRTQPLPYPNTGPGSTEAPVPQPRLAAA 255
DFCFTLPLYYPCRET LTWTRTQPLPYPNT
Sbjct: 73 DFCFTLPLYYPCRETSYSSASSAAPFAAALTWTRTQPLPYPNT----------------- 115
Query: 256 MADPKYADLPGIARNEPDVYETSDLPEDDQAEFDA-----EELTSTSVEHIIVNPNAAYD 420
ARNEPDVYETSDLPEDDQAEFDA EELTSTSVEHIIVNPNAAYD
Sbjct: 116 ------------ARNEPDVYETSDLPEDDQAEFDAFAQELEELTSTSVEHIIVNPNAAYD 163
Query: 421 KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT 600
KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT
Sbjct: 164 KFKDKRVGTKGLDFSDRIGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTT 223
Query: 601 EVEKIKMTVKESATEEKLTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAK 780
EVEKIKMTVKESATEEKLTP SHLEKLLGPDAAINLTDPDGALAK
Sbjct: 224 EVEKIKMTVKESATEEKLTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAK 283
Query: 781 RLLLQLEXXXXXXXXXXXXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTE 960
RLLLQLE PPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTE
Sbjct: 284 RLLLQLEATKNTKGAGSGGKTTSGSPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTE 343
Query: 961 LEATVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEI 1140
LEATVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEI
Sbjct: 344 LEATVRCDQDAQNPLSAGLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEI 403
Query: 1141 AKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHL 1320
AKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHL
Sbjct: 404 AKHKASVEDADTQSKVHQLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHL 463
Query: 1321 DTTQQMIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
DTTQQMIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK
Sbjct: 464 DTTQQMIACSLKDNATLLTQVQTTMRENLSTVEGNFANIDERMKKLGK 511
>ref|XP_003126370.1| PREDICTED: dynactin subunit 2-like [Sus scrofa].
Length = 331
Score = 551 bits (1420), Expect = e-157
Identities = 294/331 (88%), Positives = 295/331 (89%)
Frame = +1
Query: 472 IGKTKRTGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKIKMTVKESATEEK 651
IGK + TGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKIKMTVKESATEEK
Sbjct: 2 IGKPE-TGYESGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKIKMTVKESATEEK 60
Query: 652 LTPXXXXXXXXXXXXXXXXSHLEKLLGPDAAINLTDPDGALAKRLLLQLEXXXXXXXXXX 831
LTP SHLEKLLGPDAAINLTDPDGALAKRLLLQLE
Sbjct: 61 LTPVVLAKQLAALKQQLVASHLEKLLGPDAAINLTDPDGALAKRLLLQLEATKNTKGAGS 120
Query: 832 XXXXXXXXPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATVRCDQDAQNPLSA 1011
PPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATVRCDQDAQNPLSA
Sbjct: 121 GGKTTSGSPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELEATVRCDQDAQNPLSA 180
Query: 1012 GLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASVEDADTQSKVH 1191
GLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASVEDADTQSKVH
Sbjct: 181 GLQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASVEDADTQSKVH 240
Query: 1192 QLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMIACSLKDNATL 1371
QLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMIACSLKDNATL
Sbjct: 241 QLYETIQRWSPIASTLPELVQRLVTIKQLHEQAMQFGQLLTHLDTTQQMIACSLKDNATL 300
Query: 1372 LTQVQTTMRENLSTVEGNFANIDERMKKLGK 1464
LTQVQTTMRENLSTVEGNFANIDERMKKLGK
Sbjct: 301 LTQVQTTMRENLSTVEGNFANIDERMKKLGK 331
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,384,777
Number of extensions: 933910
Number of successful extensions: 4054
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4028
Number of HSP's successfully gapped: 2
Length of query: 532
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 428
Effective length of database: 8,754,644
Effective search space: 3746987632
Effective search space used: 3746987632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002296
(1597 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 432 e-118
gb|JH118928.1| Sus scrofa unplaced genomic scaffold ChrUScaf3567 387 e-104
>Sscrofa_Chr05
|| Length = 111506441
Score = 432 bits (218), Expect = e-118
Identities = 218/218 (100%)
Strand = Plus / Minus
Query: 75 cgacttttgctttaccctccctctgtattacccctgtcgcgagacttcctactcctccgc 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24739001 cgacttttgctttaccctccctctgtattacccctgtcgcgagacttcctactcctccgc 24738942
Query: 135 ctcctccgccgctccctttgcggccgccttaacctggacccggacccagcctctccctta 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24738941 ctcctccgccgctccctttgcggccgccttaacctggacccggacccagcctctccctta 24738882
Query: 195 cccgaacaccggccccggctccaccgaggccccggtcccccaaccccgcctcgccgccgc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24738881 cccgaacaccggccccggctccaccgaggccccggtcccccaaccccgcctcgccgccgc 24738822
Query: 255 catggcggaccctaaatacgccgaccttcccggcattg 292
||||||||||||||||||||||||||||||||||||||
Sbjct: 24738821 catggcggaccctaaatacgccgaccttcccggcattg 24738784
Score = 387 bits (195), Expect = e-104
Identities = 216/219 (98%), Gaps = 3/219 (1%)
Strand = Plus / Minus
Query: 1379 aggtgcagacaacgatgcgtgaaaacctgtccacagttgaggggaattttgccaacattg 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24761987 aggtgcagacaacgatgcgtgaaaacctgtccacagttgaggggaattttgccaacattg 24761928
Query: 1439 atgaacggatgaagaagctgggaaagtgagcaccttttgggagatggagaacaggggtaa 1498
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 24761927 atgaacggatgaagaagctgggaaagtgagcacc-tttgggagatggagaacaggggtaa 24761869
Query: 1499 tccctaccccctttgaactccgttaacaccttacacagggtttccccttaaccataactc 1558
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24761868 tcccta-cccctttgaactccgttaacaccttacacagggtttccccttaaccataactc 24761810
Query: 1559 tcgcatccccatcccatttgacactggggggcaaggggt 1597
||||||||||||||||||||||||| |||||||||||||
Sbjct: 24761809 tcgcatccccatcccatttgacact-gggggcaaggggt 24761772
Score = 325 bits (164), Expect = 4e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 617 agatgacagtgaaggagtcagccaccgaggagaagctgacccccgtggtgctggctaaac 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24765637 agatgacagtgaaggagtcagccaccgaggagaagctgacccccgtggtgctggctaaac 24765578
Query: 677 agctggcagccctgaagcagcagctggttgcttcccatctggagaagctgctgggaccag 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24765577 agctggcagccctgaagcagcagctggttgcttcccatctggagaagctgctgggaccag 24765518
Query: 737 atgccgcaatcaaccttactgaccccgatggagctctggctaag 780
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24765517 atgccgcaatcaaccttactgaccccgatggagctctggctaag 24765474
Score = 303 bits (153), Expect = 2e-79
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 780 gcgcctactgctgcagctggaagcaacaaagaacaccaagggggctggttcagggggaaa 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24765283 gcgcctactgctgcagctggaagcaacaaagaacaccaagggggctggttcagggggaaa 24765224
Query: 840 gaccaccagtgggagccccccagatagcagccttgtcacttacgaactacattctcggcc 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24765223 gaccaccagtgggagccccccagatagcagccttgtcacttacgaactacattctcggcc 24765164
Query: 900 tgagcaggacaagttctcccaagctgccaaagt 932
|||||||||||||||||||||||||||||||||
Sbjct: 24765163 tgagcaggacaagttctcccaagctgccaaagt 24765131
Score = 208 bits (105), Expect = 7e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 1184 aggtgcaccagctgtatgaaaccatacagcgctggagccccattgcctccacccttcctg 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24763561 aggtgcaccagctgtatgaaaccatacagcgctggagccccattgcctccacccttcctg 24763502
Query: 1244 agctggtgcagagactcgtcaccatcaagcagctgcatgaacaag 1288
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24763501 agctggtgcagagactcgtcaccatcaagcagctgcatgaacaag 24763457
Score = 198 bits (100), Expect = 7e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 519 gcttggagagggtctgggagtgaaggagacacctcagcaaaagtaccagagactactgca 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24766005 gcttggagagggtctgggagtgaaggagacacctcagcaaaagtaccagagactactgca 24765946
Query: 579 tgaggtccaagagctgacaactgaagtcgagaagatcaag 618
||||||||||||||||||||||||||||||||||||||||
Sbjct: 24765945 tgaggtccaagagctgacaactgaagtcgagaagatcaag 24765906
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 1287 agccatgcagtttggtcagcttctgacacacttggataccacacagcagatgatcgcttg 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24763342 agccatgcagtttggtcagcttctgacacacttggataccacacagcagatgatcgcttg 24763283
Query: 1347 ttcccttaaggacaacgccactctcttaacccaggtg 1383
|||||||||||||||||||||||||||||||||||||
Sbjct: 24763282 ttcccttaaggacaacgccactctcttaacccaggtg 24763246
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 1035 ggagactgtagagctgttgcaggcgaaggtgagtgccctggacctcgcagttttggacca 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24764010 ggagactgtagagctgttgcaggcgaaggtgagtgccctggacctcgcagttttggacca 24763951
Query: 1095 agtggaggctcggctacag 1113
|||||||||||||||||||
Sbjct: 24763950 agtggaggctcggctacag 24763932
Score = 153 bits (77), Expect = 4e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 1111 cagagtgtcctgggaaaagtgaatgagattgccaagcataaagcttctgtagaagatgca 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24763844 cagagtgtcctgggaaaagtgaatgagattgccaagcataaagcttctgtagaagatgca 24763785
Query: 1171 gatacacaaagcaaggt 1187
|||||||||||||||||
Sbjct: 24763784 gatacacaaagcaaggt 24763768
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 931 gtggcagaactcgagaagcgtctgacagagctggaagcaactgtacgctgtgatcaggat 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24764809 gtggcagaactcgagaagcgtctgacagagctggaagcaactgtacgctgtgatcaggat 24764750
Query: 991 gctcag 996
||||||
Sbjct: 24764749 gctcag 24764744
Score = 87.7 bits (44), Expect = 2e-14
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 993 tcagaatcccctttctgcaggtctgcagggagcctgccttatgg 1036
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24764231 tcagaatcccctttctgcaggtctgcagggagcctgccttatgg 24764188
Score = 60.0 bits (30), Expect = 4e-06
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 490 acaggatatgaatctggagaatatgagatg 519
||||||||||||||||||||||||||||||
Sbjct: 24766374 acaggatatgaatctggagaatatgagatg 24766345
>gb|JH118928.1| Sus scrofa unplaced genomic scaffold ChrUScaf3567
Length = 159449
Score = 387 bits (195), Expect = e-104
Identities = 216/219 (98%), Gaps = 3/219 (1%)
Strand = Plus / Plus
Query: 1379 aggtgcagacaacgatgcgtgaaaacctgtccacagttgaggggaattttgccaacattg 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109396 aggtgcagacaacgatgcgtgaaaacctgtccacagttgaggggaattttgccaacattg 109455
Query: 1439 atgaacggatgaagaagctgggaaagtgagcaccttttgggagatggagaacaggggtaa 1498
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 109456 atgaacggatgaagaagctgggaaagtgagcacc-tttgggagatggagaacaggggtaa 109514
Query: 1499 tccctaccccctttgaactccgttaacaccttacacagggtttccccttaaccataactc 1558
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109515 tcccta-cccctttgaactccgttaacaccttacacagggtttccccttaaccataactc 109573
Query: 1559 tcgcatccccatcccatttgacactggggggcaaggggt 1597
||||||||||||||||||||||||| |||||||||||||
Sbjct: 109574 tcgcatccccatcccatttgacact-gggggcaaggggt 109611
Score = 325 bits (164), Expect = 4e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 617 agatgacagtgaaggagtcagccaccgaggagaagctgacccccgtggtgctggctaaac 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105747 agatgacagtgaaggagtcagccaccgaggagaagctgacccccgtggtgctggctaaac 105806
Query: 677 agctggcagccctgaagcagcagctggttgcttcccatctggagaagctgctgggaccag 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105807 agctggcagccctgaagcagcagctggttgcttcccatctggagaagctgctgggaccag 105866
Query: 737 atgccgcaatcaaccttactgaccccgatggagctctggctaag 780
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105867 atgccgcaatcaaccttactgaccccgatggagctctggctaag 105910
Score = 303 bits (153), Expect = 2e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 780 gcgcctactgctgcagctggaagcaacaaagaacaccaagggggctggttcagggggaaa 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106101 gcgcctactgctgcagctggaagcaacaaagaacaccaagggggctggttcagggggaaa 106160
Query: 840 gaccaccagtgggagccccccagatagcagccttgtcacttacgaactacattctcggcc 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106161 gaccaccagtgggagccccccagatagcagccttgtcacttacgaactacattctcggcc 106220
Query: 900 tgagcaggacaagttctcccaagctgccaaagt 932
|||||||||||||||||||||||||||||||||
Sbjct: 106221 tgagcaggacaagttctcccaagctgccaaagt 106253
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 75 cgacttttgctttaccctccctctgtattacccctgtcgcgagacttcctactcctccgc 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95006 cgacttttgctttaccctccctctgtattacccctgtcgcgagacttcctactcctccgc 95065
Query: 135 ctcctccgccgctccctttgcggccgccttaacctggacccggacccagcctctccctta 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95066 ctcctccgccgctccctttgcggccgccttaacctggacccggacccagcctctccctta 95125
Query: 195 cccgaacac 203
|||||||||
Sbjct: 95126 cccgaacac 95134
Score = 208 bits (105), Expect = 7e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1184 aggtgcaccagctgtatgaaaccatacagcgctggagccccattgcctccacccttcctg 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107822 aggtgcaccagctgtatgaaaccatacagcgctggagccccattgcctccacccttcctg 107881
Query: 1244 agctggtgcagagactcgtcaccatcaagcagctgcatgaacaag 1288
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107882 agctggtgcagagactcgtcaccatcaagcagctgcatgaacaag 107926
Score = 198 bits (100), Expect = 7e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 519 gcttggagagggtctgggagtgaaggagacacctcagcaaaagtaccagagactactgca 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105379 gcttggagagggtctgggagtgaaggagacacctcagcaaaagtaccagagactactgca 105438
Query: 579 tgaggtccaagagctgacaactgaagtcgagaagatcaag 618
||||||||||||||||||||||||||||||||||||||||
Sbjct: 105439 tgaggtccaagagctgacaactgaagtcgagaagatcaag 105478
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 360 ggaggagctgacgagtacaagtgtggagcacatcattgtcaatcccaatgctgcctatga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104718 ggaggagctgacgagtacaagtgtggagcacatcattgtcaatcccaatgctgcctatga 104777
Query: 420 caagttcaaagacaagagagtgggaacaaagggccttg 457
||||||||||||||||||||||||||||||||||||||
Sbjct: 104778 caagttcaaagacaagagagtgggaacaaagggccttg 104815
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1287 agccatgcagtttggtcagcttctgacacacttggataccacacagcagatgatcgcttg 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108041 agccatgcagtttggtcagcttctgacacacttggataccacacagcagatgatcgcttg 108100
Query: 1347 ttcccttaaggacaacgccactctcttaacccaggtg 1383
|||||||||||||||||||||||||||||||||||||
Sbjct: 108101 ttcccttaaggacaacgccactctcttaacccaggtg 108137
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1035 ggagactgtagagctgttgcaggcgaaggtgagtgccctggacctcgcagttttggacca 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107373 ggagactgtagagctgttgcaggcgaaggtgagtgccctggacctcgcagttttggacca 107432
Query: 1095 agtggaggctcggctacag 1113
|||||||||||||||||||
Sbjct: 107433 agtggaggctcggctacag 107451
Score = 153 bits (77), Expect = 4e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1111 cagagtgtcctgggaaaagtgaatgagattgccaagcataaagcttctgtagaagatgca 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107539 cagagtgtcctgggaaaagtgaatgagattgccaagcataaagcttctgtagaagatgca 107598
Query: 1171 gatacacaaagcaaggt 1187
|||||||||||||||||
Sbjct: 107599 gatacacaaagcaaggt 107615
Score = 139 bits (70), Expect = 5e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 292 gccaggaacgagccagatgtttatgaaaccagcgacctgcctgaggatgaccaagcggag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95978 gccaggaacgagccagatgtttatgaaaccagcgacctgcctgaggatgaccaagcggag 96037
Query: 352 tttgatgcgg 361
||||||||||
Sbjct: 96038 tttgatgcgg 96047
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 931 gtggcagaactcgagaagcgtctgacagagctggaagcaactgtacgctgtgatcaggat 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106575 gtggcagaactcgagaagcgtctgacagagctggaagcaactgtacgctgtgatcaggat 106634
Query: 991 gctcag 996
||||||
Sbjct: 106635 gctcag 106640
Score = 125 bits (63), Expect = 8e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 457 gatttctcagatcgaattggcaaaaccaagagaacaggatatgaatctggagaatatgag 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104977 gatttctcagatcgaattggcaaaaccaagagaacaggatatgaatctggagaatatgag 105036
Query: 517 atg 519
|||
Sbjct: 105037 atg 105039
Score = 87.7 bits (44), Expect = 2e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 993 tcagaatcccctttctgcaggtctgcagggagcctgccttatgg 1036
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107152 tcagaatcccctttctgcaggtctgcagggagcctgccttatgg 107195
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,268,754
Number of extensions: 257
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 26
Length of query: 1597
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1575
Effective length of database: 2,808,408,574
Effective search space: 4423243504050
Effective search space used: 4423243504050
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)