Animal-Genome cDNA 20110601C-002297

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002297
         (1540 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039805.1| H2A histone family, member Y [Bos taurus].        560   e-159
Alignment   gi|NP_001069554.1| H2A histone family, member Y2 [Bos taurus].       417   e-116
Alignment   gi|NP_001073248.1| H2A histone family, member X [Bos taurus].        142   1e-33
Alignment   gi|XP_002686098.1| PREDICTED: histone cluster 2, H2ab [Bos taur...   140   4e-33
Alignment   gi|XP_871733.2| PREDICTED: histone cluster 2, H2ab [Bos taurus].     140   4e-33
Alignment   gi|XP_002686102.1| PREDICTED: histone cluster 2, H2aa3-like [Bo...   138   1e-32
Alignment   gi|XP_002686100.1| PREDICTED: histone cluster 2, H2aa3-like [Bo...   138   1e-32
Alignment   gi|XP_002684120.1| PREDICTED: histone cluster 2, H2aa3-like [Bo...   138   1e-32
Alignment   gi|NP_001091566.1| histone cluster 3, H2a [Bos taurus].              137   2e-32
Alignment   gi|NP_001075189.1| histone H2A type 2-C [Bos taurus].                137   2e-32

>ref|NP_001039805.1| H2A histone family, member Y [Bos taurus].
          Length = 371

 Score =  560 bits (1442), Expect = e-159
 Identities = 292/352 (82%), Positives = 308/352 (87%), Gaps = 3/352 (0%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20   GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139

Query: 664  XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQVV 843
                           ARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKL ++
Sbjct: 140  SQKKPVSKKTGGKKGARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI 199

Query: 844  QADIASI---DSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGA 1014
             ++I+++   + +A+++PTN D     ++GNTLEKKGGKEFVEAVLELRKKNGPLEVAGA
Sbjct: 200  HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLEVAGA 259

Query: 1015 AVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRKR 1194
            AVSAGHGLPAKFVIHCNSP+WGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGR  
Sbjct: 260  AVSAGHGLPAKFVIHCNSPIWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNG 319

Query: 1195 FPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDAN 1350
            FPKQTAAQLIL AISSYFVS MSSSIK VYFVLFDSESIGIYVQE  +LDAN
Sbjct: 320  FPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN 371


>ref|NP_001069554.1| H2A histone family, member Y2 [Bos taurus].
          Length = 372

 Score =  417 bits (1071), Expect = e-116
 Identities = 220/352 (62%), Positives = 258/352 (73%), Gaps = 4/352 (1%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGR++RY+KKG  KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20   GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+K K E I++          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKAKSETILSPPPEKRGRKA 139

Query: 664  XXXXXXXXXXXXXXX-ARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQV 840
                              K  K  +  K  +++ST+E  P DGFT+LS+KSL LGQKL +
Sbjct: 140  TSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPGDGFTILSSKSLVLGQKLSL 199

Query: 841  VQADIASIDS---DAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAG 1011
             Q+DI+ I S   + +VHPT  +     ++G  LEK GGKEF+E V ELRK  GPLEVA 
Sbjct: 200  TQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAE 259

Query: 1012 AAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRK 1191
            AAVS   GL AKFVIHC+ P WG+DKCEE LE+T+KNCL+ A+DKKLKS+AFP   SGR 
Sbjct: 260  AAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRN 319

Query: 1192 RFPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDA 1347
             FPKQTAAQ+ L AIS++F    +SS+KNVYF+LFDSESIGIYVQE  +LDA
Sbjct: 320  CFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIGIYVQEMAKLDA 371


>ref|NP_001073248.1| H2A histone family, member X [Bos taurus].
          Length = 143

 Score =  142 bits (357), Expect = 1e-33
 Identities = 71/98 (72%), Positives = 81/98 (82%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KGH   R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 597
           H+ LA+ NDEELN+LL GVTIA GGVLPNI   LL KK
Sbjct: 83  HLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120


>ref|XP_002686098.1| PREDICTED: histone cluster 2, H2ab [Bos taurus].
          Length = 130

 Score =  140 bits (352), Expect = 4e-33
 Identities = 72/101 (71%), Positives = 82/101 (81%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
           H+ LAV NDEELN+LL GVTIA GGVLPNI   LL KK  S
Sbjct: 83  HLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123


>ref|XP_871733.2| PREDICTED: histone cluster 2, H2ab [Bos taurus].
          Length = 130

 Score =  140 bits (352), Expect = 4e-33
 Identities = 72/101 (71%), Positives = 82/101 (81%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
           H+ LAV NDEELN+LL GVTIA GGVLPNI   LL KK  S
Sbjct: 83  HLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123


>ref|XP_002686102.1| PREDICTED: histone cluster 2, H2aa3-like [Bos taurus].
          Length = 130

 Score =  138 bits (348), Expect = 1e-32
 Identities = 72/104 (69%), Positives = 82/104 (78%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 83  HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>ref|XP_002686100.1| PREDICTED: histone cluster 2, H2aa3-like [Bos taurus].
          Length = 130

 Score =  138 bits (348), Expect = 1e-32
 Identities = 72/104 (69%), Positives = 82/104 (78%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 83  HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>ref|XP_002684120.1| PREDICTED: histone cluster 2, H2aa3-like [Bos taurus].
          Length = 130

 Score =  138 bits (348), Expect = 1e-32
 Identities = 72/104 (69%), Positives = 82/104 (78%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 83  HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>ref|NP_001091566.1| histone cluster 3, H2a [Bos taurus].
          Length = 130

 Score =  137 bits (346), Expect = 2e-32
 Identities = 71/104 (68%), Positives = 82/104 (78%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 83  HLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHK 126


>ref|NP_001075189.1| histone H2A type 2-C [Bos taurus].
          Length = 129

 Score =  137 bits (346), Expect = 2e-32
 Identities = 71/101 (70%), Positives = 81/101 (80%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S
Sbjct: 83  HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTES 123


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,924,141
Number of extensions: 1697244
Number of successful extensions: 8427
Number of sequences better than 1.0e-05: 57
Number of HSP's gapped: 8339
Number of HSP's successfully gapped: 58
Length of query: 513
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 406
Effective length of database: 14,140,958
Effective search space: 5741228948
Effective search space used: 5741228948
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002297
         (1540 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_538635.2| PREDICTED: similar to H2A histone family, membe...   557   e-159
Alignment   gi|XP_850298.1| PREDICTED: similar to Core histone macro-H2A.2 ...   422   e-118
Alignment   gi|XP_861172.1| PREDICTED: similar to Core histone macro-H2A.2 ...   422   e-118
Alignment   gi|XP_861204.1| PREDICTED: similar to Core histone macro-H2A.2 ...   421   e-117
Alignment   gi|XP_861114.1| PREDICTED: similar to Core histone macro-H2A.2 ...   416   e-116
Alignment   gi|XP_546142.2| PREDICTED: similar to Core histone macro-H2A.2 ...   249   7e-66
Alignment   gi|XP_861059.1| PREDICTED: similar to Core histone macro-H2A.2 ...   189   6e-48
Alignment   gi|XP_853256.1| PREDICTED: similar to Histone H2A.x (H2a/x) [Ca...   142   1e-33
Alignment   gi|XP_540293.2| PREDICTED: similar to histone H2A [Canis famili...   140   4e-33
Alignment   gi|XP_850808.1| PREDICTED: similar to Histone H2A.o (H2A/o) (H2...   138   1e-32

>ref|XP_538635.2| PREDICTED: similar to H2A histone family, member Y isoform 3 [Canis
            familiaris].
          Length = 412

 Score =  557 bits (1436), Expect = e-159
 Identities = 297/378 (78%), Positives = 315/378 (83%), Gaps = 4/378 (1%)
 Frame = +1

Query: 229  ISRATAMXXXXXXXXXXXXXXXXXXGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLE 408
            +++ATAM                  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLE
Sbjct: 35   LNKATAMSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLE 94

Query: 409  YLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELL 588
            YLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELL
Sbjct: 95   YLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELL 154

Query: 589  AKKRGSKGKLEAIITXXXXXXXXXXXXXXXXXXXXXXXXXARKSKK-QGEVSKAASADST 765
            AKKRGSKGKLEAIIT                         ARKSKK QGEVSKAASADST
Sbjct: 155  AKKRGSKGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADST 214

Query: 766  TEGTPADGFTVLSTKSLFLGQKLQVVQADIASI---DSDAVVHPTNTDFYTGGEVGNTLE 936
            TEGTPADGFTVLSTKSLFLGQKL ++ ++I+++   + +A+++PTN D     ++GNTLE
Sbjct: 215  TEGTPADGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLE 274

Query: 937  KKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTV 1116
            KKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTV
Sbjct: 275  KKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTV 334

Query: 1117 KNCLALADDKKLKSIAFPSIGSGRKRFPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLF 1296
            KNCLALADDKKLKSIAFPSIGSGR  FPKQTAAQLIL AISSYFVS MSSSIK VYFVLF
Sbjct: 335  KNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLF 394

Query: 1297 DSESIGIYVQENGQLDAN 1350
            DSESIGIYVQE  +LDAN
Sbjct: 395  DSESIGIYVQEMAKLDAN 412


>ref|XP_850298.1| PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2)
            (mH2A2) isoform 3 [Canis familiaris].
          Length = 372

 Score =  422 bits (1086), Expect = e-118
 Identities = 225/353 (63%), Positives = 263/353 (74%), Gaps = 5/353 (1%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGR++RY+KKG  KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20   GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+KGK EAI++          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSEAILSPPPEKRGRKA 139

Query: 664  XXXXXXXXXXXXXXXARKSKK--QGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQ 837
                            R SKK   G + K  +++ST+E  P DGFT+LS+KSL LGQKL 
Sbjct: 140  ASGKKGGKKSKAAKP-RTSKKVSPGRLDKEGTSNSTSEDGPGDGFTILSSKSLVLGQKLS 198

Query: 838  VVQADIASIDS---DAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVA 1008
            + Q+DI+ I S   + +VHPT  +     ++G  LEK GGKEF+E V ELRK  GPLEVA
Sbjct: 199  LTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGPLEVA 258

Query: 1009 GAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGR 1188
             AAVS   GL AKFVIHC+ P WG+DKCEE LE+T+KNCL+ A+DKKLKS+AFP   SGR
Sbjct: 259  EAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGR 318

Query: 1189 KRFPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDA 1347
              FPKQTAAQ+ L AIS++F    +SS+KNVYF+LFDSESIGIYVQE  +LDA
Sbjct: 319  NCFPKQTAAQVTLKAISAHFDDSSTSSLKNVYFLLFDSESIGIYVQEMAKLDA 371


>ref|XP_861172.1| PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2)
            (mH2A2) isoform 6 [Canis familiaris].
          Length = 363

 Score =  422 bits (1085), Expect = e-118
 Identities = 227/359 (63%), Positives = 262/359 (72%), Gaps = 11/359 (3%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGR++RY+KKG  KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20   GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+KGK EAI++          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSEAILSPPPEKRGRK- 138

Query: 664  XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGT--------PADGFTVLSTKSLF 819
                           A   KK G+ SK+   DS  EGT        P DGFT+LS+KSL 
Sbjct: 139  ---------------AASGKKGGKKSKSKPKDSDKEGTSNSTSEDGPGDGFTILSSKSLV 183

Query: 820  LGQKLQVVQADIASIDS---DAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKN 990
            LGQKL + Q+DI+ I S   + +VHPT  +     ++G  LEK GGKEF+E V ELRK  
Sbjct: 184  LGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQ 243

Query: 991  GPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFP 1170
            GPLEVA AAVS   GL AKFVIHC+ P WG+DKCEE LE+T+KNCL+ A+DKKLKS+AFP
Sbjct: 244  GPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSAAEDKKLKSVAFP 303

Query: 1171 SIGSGRKRFPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDA 1347
               SGR  FPKQTAAQ+ L AIS++F    +SS+KNVYF+LFDSESIGIYVQE  +LDA
Sbjct: 304  PFPSGRNCFPKQTAAQVTLKAISAHFDDSSTSSLKNVYFLLFDSESIGIYVQEMAKLDA 362


>ref|XP_861204.1| PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2)
            (mH2A2) isoform 7 [Canis familiaris].
          Length = 372

 Score =  421 bits (1081), Expect = e-117
 Identities = 222/352 (63%), Positives = 260/352 (73%), Gaps = 4/352 (1%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGR++RY+KKG  KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20   GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+KGK EAI++          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSEAILSPPPEKRGRKA 139

Query: 664  XXXXXXXXXXXXXXX-ARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQV 840
                              K  K  +  K  +++ST+E  P DGFT+LS+KSL LGQKL +
Sbjct: 140  ASGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPGDGFTILSSKSLVLGQKLSL 199

Query: 841  VQADIASIDS---DAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAG 1011
             Q+DI+ I S   + +VHPT  +     ++G  LEK GGKEF+E V ELRK  GPLEVA 
Sbjct: 200  TQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAE 259

Query: 1012 AAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRK 1191
            AAVS   GL AKFVIHC+ P WG+DKCEE LE+T+KNCL+ A+DKKLKS+AFP   SGR 
Sbjct: 260  AAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRN 319

Query: 1192 RFPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDA 1347
             FPKQTAAQ+ L AIS++F    +SS+KNVYF+LFDSESIGIYVQE  +LDA
Sbjct: 320  CFPKQTAAQVTLKAISAHFDDSSTSSLKNVYFLLFDSESIGIYVQEMAKLDA 371


>ref|XP_861114.1| PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2)
            (mH2A2) isoform 5 [Canis familiaris].
          Length = 388

 Score =  416 bits (1069), Expect = e-116
 Identities = 224/368 (60%), Positives = 261/368 (70%), Gaps = 20/368 (5%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGR++RY+KKG  KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20   GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+KGK EAI++          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSEAILSPPPEKRGRKA 139

Query: 664  XXXXXXXXXXXXXXXA-----------------RKSKKQGEVSKAASADSTTEGTPADGF 792
                                             RK K Q    K  +++ST+E  P DGF
Sbjct: 140  ASGKKGGKKSKAAKPRTSKKVSPGRLCARDSDNRKLKDQKMSDKEGTSNSTSEDGPGDGF 199

Query: 793  TVLSTKSLFLGQKLQVVQADIASIDS---DAVVHPTNTDFYTGGEVGNTLEKKGGKEFVE 963
            T+LS+KSL LGQKL + Q+DI+ I S   + +VHPT  +     ++G  LEK GGKEF+E
Sbjct: 200  TILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLE 259

Query: 964  AVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADD 1143
             V ELRK  GPLEVA AAVS   GL AKFVIHC+ P WG+DKCEE LE+T+KNCL+ A+D
Sbjct: 260  TVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSAAED 319

Query: 1144 KKLKSIAFPSIGSGRKRFPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYV 1323
            KKLKS+AFP   SGR  FPKQTAAQ+ L AIS++F    +SS+KNVYF+LFDSESIGIYV
Sbjct: 320  KKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSTSSLKNVYFLLFDSESIGIYV 379

Query: 1324 QENGQLDA 1347
            QE  +LDA
Sbjct: 380  QEMAKLDA 387


>ref|XP_546142.2| PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2)
            (mH2A2) isoform 1 [Canis familiaris].
          Length = 306

 Score =  249 bits (635), Expect = 7e-66
 Identities = 127/211 (60%), Positives = 157/211 (74%), Gaps = 3/211 (1%)
 Frame = +1

Query: 724  KQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQVVQADIASIDS---DAVVHPTN 894
            K  +  K  +++ST+E  P DGFT+LS+KSL LGQKL + Q+DI+ I S   + +VHPT 
Sbjct: 95   KPKDSDKEGTSNSTSEDGPGDGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTT 154

Query: 895  TDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPV 1074
             +     ++G  LEK GGKEF+E V ELRK  GPLEVA AAVS   GL AKFVIHC+ P 
Sbjct: 155  AEIDLKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQ 214

Query: 1075 WGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRKRFPKQTAAQLILXAISSYFVS 1254
            WG+DKCEE LE+T+KNCL+ A+DKKLKS+AFP   SGR  FPKQTAAQ+ L AIS++F  
Sbjct: 215  WGSDKCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDD 274

Query: 1255 PMSSSIKNVYFVLFDSESIGIYVQENGQLDA 1347
              +SS+KNVYF+LFDSESIGIYVQE  +LDA
Sbjct: 275  SSTSSLKNVYFLLFDSESIGIYVQEMAKLDA 305



 Score =  129 bits (324), Expect = 8e-30
 Identities = 63/74 (85%), Positives = 68/74 (91%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           GVIFPVGR++RY+KKG  KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20  GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79

Query: 484 HILLAVANDEELNQ 525
           HILLAVANDEELNQ
Sbjct: 80  HILLAVANDEELNQ 93


>ref|XP_861059.1| PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2)
           (mH2A2) isoform 4 [Canis familiaris].
          Length = 182

 Score =  189 bits (480), Expect = 6e-48
 Identities = 103/159 (64%), Positives = 116/159 (72%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           GVIFPVGR++RY+KKG  KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20  GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
           HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+KGK EAI++          
Sbjct: 80  HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSEAILS---------- 129

Query: 664 XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTP 780
                          A   KK G+ SKAA   ++ + +P
Sbjct: 130 ------PPPEKRGRKAASGKKGGKKSKAAKPRTSKKVSP 162


>ref|XP_853256.1| PREDICTED: similar to Histone H2A.x (H2a/x) [Canis familiaris].
          Length = 242

 Score =  142 bits (357), Expect = 1e-33
 Identities = 71/98 (72%), Positives = 81/98 (82%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KGH   R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 122 GLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 181

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 597
           H+ LA+ NDEELN+LL GVTIA GGVLPNI   LL KK
Sbjct: 182 HLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 219


>ref|XP_540293.2| PREDICTED: similar to histone H2A [Canis familiaris].
          Length = 193

 Score =  140 bits (352), Expect = 4e-33
 Identities = 72/101 (71%), Positives = 82/101 (81%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 86  GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 145

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
           H+ LAV NDEELN+LL GVTIA GGVLPNI   LL KK  S
Sbjct: 146 HLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 186


>ref|XP_850808.1| PREDICTED: similar to Histone H2A.o (H2A/o) (H2A.2) (H2a-615)
           [Canis familiaris].
          Length = 130

 Score =  138 bits (348), Expect = 1e-32
 Identities = 72/104 (69%), Positives = 82/104 (78%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 83  HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,000,663
Number of extensions: 1636536
Number of successful extensions: 8682
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 8534
Number of HSP's successfully gapped: 51
Length of query: 513
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 406
Effective length of database: 15,307,552
Effective search space: 6214866112
Effective search space used: 6214866112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002297
         (1540 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_613075.1| core histone macro-H2A.1 isoform 1 [Homo sapien...   597   e-170
Alignment   gi|NP_004884.1| core histone macro-H2A.1 isoform 2 [Homo sapien...   560   e-159
Alignment   gi|NP_001035248.1| core histone macro-H2A.1 isoform 2 [Homo sap...   560   e-159
Alignment   gi|NP_613258.2| core histone macro-H2A.1 isoform 3 [Homo sapien...   555   e-158
Alignment   gi|NP_061119.1| core histone macro-H2A.2 [Homo sapiens].             419   e-117
Alignment   gi|NP_002096.1| histone H2A.x [Homo sapiens].                        142   1e-33
Alignment   gi|NP_778235.1| histone H2A type 2-B [Homo sapiens].                 140   4e-33
Alignment   gi|NP_734466.1| histone H2A type 1-A [Homo sapiens].                 139   9e-33
Alignment   gi|NP_001035807.1| histone H2A type 2-A [Homo sapiens].              138   1e-32
Alignment   gi|NP_003507.1| histone H2A type 2-A [Homo sapiens].                 138   1e-32

>ref|NP_613075.1| core histone macro-H2A.1 isoform 1 [Homo sapiens].
          Length = 369

 Score =  597 bits (1539), Expect = e-170
 Identities = 315/350 (90%), Positives = 316/350 (90%), Gaps = 1/350 (0%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20   GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139

Query: 664  XXXXXXXXXXXXXXXARKSKK-QGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQV 840
                           ARKSKK QGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQV
Sbjct: 140  SQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQV 199

Query: 841  VQADIASIDSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAV 1020
            VQADIASIDSDAVVHPTNTDFY GGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAV
Sbjct: 200  VQADIASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAV 259

Query: 1021 SAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRKRFP 1200
            SAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGR  FP
Sbjct: 260  SAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFP 319

Query: 1201 KQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDAN 1350
            KQTAAQLIL AISSYFVS MSSSIK VYFVLFDSESIGIYVQE  +LDAN
Sbjct: 320  KQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN 369


>ref|NP_004884.1| core histone macro-H2A.1 isoform 2 [Homo sapiens].
          Length = 371

 Score =  560 bits (1443), Expect = e-159
 Identities = 293/352 (83%), Positives = 308/352 (87%), Gaps = 3/352 (0%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20   GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139

Query: 664  XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQVV 843
                           ARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKL ++
Sbjct: 140  SQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI 199

Query: 844  QADIASI---DSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGA 1014
             ++I+++   + +A+++PTN D     ++GNTLEKKGGKEFVEAVLELRKKNGPLEVAGA
Sbjct: 200  HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLEVAGA 259

Query: 1015 AVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRKR 1194
            AVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGR  
Sbjct: 260  AVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNG 319

Query: 1195 FPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDAN 1350
            FPKQTAAQLIL AISSYFVS MSSSIK VYFVLFDSESIGIYVQE  +LDAN
Sbjct: 320  FPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN 371


>ref|NP_001035248.1| core histone macro-H2A.1 isoform 2 [Homo sapiens].
          Length = 371

 Score =  560 bits (1443), Expect = e-159
 Identities = 293/352 (83%), Positives = 308/352 (87%), Gaps = 3/352 (0%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20   GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139

Query: 664  XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQVV 843
                           ARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKL ++
Sbjct: 140  SQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI 199

Query: 844  QADIASI---DSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGA 1014
             ++I+++   + +A+++PTN D     ++GNTLEKKGGKEFVEAVLELRKKNGPLEVAGA
Sbjct: 200  HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLEVAGA 259

Query: 1015 AVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRKR 1194
            AVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGR  
Sbjct: 260  AVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNG 319

Query: 1195 FPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDAN 1350
            FPKQTAAQLIL AISSYFVS MSSSIK VYFVLFDSESIGIYVQE  +LDAN
Sbjct: 320  FPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN 371


>ref|NP_613258.2| core histone macro-H2A.1 isoform 3 [Homo sapiens].
          Length = 372

 Score =  555 bits (1431), Expect = e-158
 Identities = 293/353 (83%), Positives = 308/353 (87%), Gaps = 4/353 (1%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20   GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139

Query: 664  XXXXXXXXXXXXXXXARKSKK-QGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQV 840
                           ARKSKK QGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKL +
Sbjct: 140  SQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL 199

Query: 841  VQADIASI---DSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAG 1011
            + ++I+++   + +A+++PTN D     ++GNTLEKKGGKEFVEAVLELRKKNGPLEVAG
Sbjct: 200  IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLEVAG 259

Query: 1012 AAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRK 1191
            AAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGR 
Sbjct: 260  AAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRN 319

Query: 1192 RFPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDAN 1350
             FPKQTAAQLIL AISSYFVS MSSSIK VYFVLFDSESIGIYVQE  +LDAN
Sbjct: 320  GFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN 372


>ref|NP_061119.1| core histone macro-H2A.2 [Homo sapiens].
          Length = 372

 Score =  419 bits (1077), Expect = e-117
 Identities = 221/352 (62%), Positives = 259/352 (73%), Gaps = 4/352 (1%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGR++RY+KKG  KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20   GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+KGK E I++          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSETILSPPPEKRGRKA 139

Query: 664  XXXXXXXXXXXXXXX-ARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQV 840
                              K  K  +  K  +++ST+E  P DGFT+LS+KSL LGQKL +
Sbjct: 140  TSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPGDGFTILSSKSLVLGQKLSL 199

Query: 841  VQADIASIDS---DAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAG 1011
             Q+DI+ I S   + +VHPT  +     ++G  LEK GGKEF+E V ELRK  GPLEVA 
Sbjct: 200  TQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAE 259

Query: 1012 AAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRK 1191
            AAVS   GL AKFVIHC+ P WG+DKCEE LE+T+KNCL+ A+DKKLKS+AFP   SGR 
Sbjct: 260  AAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRN 319

Query: 1192 RFPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDA 1347
             FPKQTAAQ+ L AIS++F    +SS+KNVYF+LFDSESIGIYVQE  +LDA
Sbjct: 320  CFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIGIYVQEMAKLDA 371


>ref|NP_002096.1| histone H2A.x [Homo sapiens].
          Length = 143

 Score =  142 bits (357), Expect = 1e-33
 Identities = 71/98 (72%), Positives = 81/98 (82%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KGH   R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 597
           H+ LA+ NDEELN+LL GVTIA GGVLPNI   LL KK
Sbjct: 83  HLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120


>ref|NP_778235.1| histone H2A type 2-B [Homo sapiens].
          Length = 130

 Score =  140 bits (352), Expect = 4e-33
 Identities = 72/101 (71%), Positives = 82/101 (81%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
           H+ LAV NDEELN+LL GVTIA GGVLPNI   LL KK  S
Sbjct: 83  HLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123


>ref|NP_734466.1| histone H2A type 1-A [Homo sapiens].
          Length = 131

 Score =  139 bits (349), Expect = 9e-33
 Identities = 71/101 (70%), Positives = 82/101 (81%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   RIG GAPVY+AAVLEYLTAEILELAGNA+RDNKK R+ PR
Sbjct: 23  GLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
           H+ LA+ NDEELN+LL GVTIA GGVLPNI   LL KK  S
Sbjct: 83  HLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123


>ref|NP_001035807.1| histone H2A type 2-A [Homo sapiens].
          Length = 130

 Score =  138 bits (348), Expect = 1e-32
 Identities = 72/104 (69%), Positives = 82/104 (78%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 83  HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>ref|NP_003507.1| histone H2A type 2-A [Homo sapiens].
          Length = 130

 Score =  138 bits (348), Expect = 1e-32
 Identities = 72/104 (69%), Positives = 82/104 (78%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 83  HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,569,584
Number of extensions: 1581184
Number of successful extensions: 8244
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 8122
Number of HSP's successfully gapped: 51
Length of query: 513
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 406
Effective length of database: 14,770,016
Effective search space: 5996626496
Effective search space used: 5996626496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002297
         (1540 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001152987.1| core histone macro-H2A.1 isoform 4 [Mus musc...   600   e-171
Alignment   gi|NP_001152986.1| core histone macro-H2A.1 isoform 3 [Mus musc...   595   e-170
Alignment   gi|NP_001152985.1| core histone macro-H2A.1 isoform 2 [Mus musc...   556   e-158
Alignment   gi|NP_036145.1| core histone macro-H2A.1 isoform 1 [Mus musculu...   551   e-157
Alignment   gi|NP_996883.1| core histone macro-H2A.2 [Mus musculus].             420   e-117
Alignment   gi|NP_034566.1| histone H2A.x [Mus musculus].                        142   9e-34
Alignment   gi|NP_835585.3| histone H2A type 2-B [Mus musculus].                 141   2e-33
Alignment   gi|NP_038577.1| histone H2A type 2-A [Mus musculus].                 138   1e-32
Alignment   gi|XP_003084967.1| PREDICTED: src substrate cortactin [Mus musc...   138   1e-32
Alignment   gi|XP_003085904.1| PREDICTED: src substrate cortactin [Mus musc...   138   1e-32

>ref|NP_001152987.1| core histone macro-H2A.1 isoform 4 [Mus musculus].
          Length = 368

 Score =  600 bits (1546), Expect = e-171
 Identities = 312/349 (89%), Positives = 316/349 (90%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20   GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139

Query: 664  XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQVV 843
                           ARKSKKQGEVSKAASADSTTEGTP DGFTVLSTKSLFLGQKLQVV
Sbjct: 140  SQKKPVAKKTGGKKGARKSKKQGEVSKAASADSTTEGTPTDGFTVLSTKSLFLGQKLQVV 199

Query: 844  QADIASIDSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVS 1023
            QADIASIDSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAA+S
Sbjct: 200  QADIASIDSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAIS 259

Query: 1024 AGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRKRFPK 1203
            AGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADD+KLKSIAFPSIGSGR  FPK
Sbjct: 260  AGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPK 319

Query: 1204 QTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDAN 1350
            QTAAQLIL AISSYFVS MSSSIK VYF+LFDSESIGIYVQE  +LDAN
Sbjct: 320  QTAAQLILKAISSYFVSTMSSSIKTVYFMLFDSESIGIYVQEMAKLDAN 368


>ref|NP_001152986.1| core histone macro-H2A.1 isoform 3 [Mus musculus].
          Length = 369

 Score =  595 bits (1534), Expect = e-170
 Identities = 312/350 (89%), Positives = 316/350 (90%), Gaps = 1/350 (0%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20   GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139

Query: 664  XXXXXXXXXXXXXXXARKSKK-QGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQV 840
                           ARKSKK QGEVSKAASADSTTEGTP DGFTVLSTKSLFLGQKLQV
Sbjct: 140  SQKKPVAKKTGGKKGARKSKKKQGEVSKAASADSTTEGTPTDGFTVLSTKSLFLGQKLQV 199

Query: 841  VQADIASIDSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAV 1020
            VQADIASIDSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAA+
Sbjct: 200  VQADIASIDSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAI 259

Query: 1021 SAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRKRFP 1200
            SAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADD+KLKSIAFPSIGSGR  FP
Sbjct: 260  SAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFP 319

Query: 1201 KQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDAN 1350
            KQTAAQLIL AISSYFVS MSSSIK VYF+LFDSESIGIYVQE  +LDAN
Sbjct: 320  KQTAAQLILKAISSYFVSTMSSSIKTVYFMLFDSESIGIYVQEMAKLDAN 369


>ref|NP_001152985.1| core histone macro-H2A.1 isoform 2 [Mus musculus].
          Length = 371

 Score =  556 bits (1432), Expect = e-158
 Identities = 289/352 (82%), Positives = 307/352 (87%), Gaps = 3/352 (0%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20   GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139

Query: 664  XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQVV 843
                           ARKSKKQGEVSKAASADSTTEGTP DGFTVLSTKSLFLGQKL ++
Sbjct: 140  SQKKPVAKKTGGKKGARKSKKQGEVSKAASADSTTEGTPTDGFTVLSTKSLFLGQKLNLI 199

Query: 844  QADIASI---DSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGA 1014
             ++I+++   + +A+++PTN D     ++GNTLEKKGGKEFVEAVLELRKKNGPLEVAGA
Sbjct: 200  HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLEVAGA 259

Query: 1015 AVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRKR 1194
            A+SAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADD+KLKSIAFPSIGSGR  
Sbjct: 260  AISAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNG 319

Query: 1195 FPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDAN 1350
            FPKQTAAQLIL AISSYFVS MSSSIK VYF+LFDSESIGIYVQE  +LDAN
Sbjct: 320  FPKQTAAQLILKAISSYFVSTMSSSIKTVYFMLFDSESIGIYVQEMAKLDAN 371


>ref|NP_036145.1| core histone macro-H2A.1 isoform 1 [Mus musculus].
          Length = 372

 Score =  551 bits (1420), Expect = e-157
 Identities = 289/353 (81%), Positives = 307/353 (86%), Gaps = 4/353 (1%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20   GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139

Query: 664  XXXXXXXXXXXXXXXARKSKK-QGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQV 840
                           ARKSKK QGEVSKAASADSTTEGTP DGFTVLSTKSLFLGQKL +
Sbjct: 140  SQKKPVAKKTGGKKGARKSKKKQGEVSKAASADSTTEGTPTDGFTVLSTKSLFLGQKLNL 199

Query: 841  VQADIASI---DSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAG 1011
            + ++I+++   + +A+++PTN D     ++GNTLEKKGGKEFVEAVLELRKKNGPLEVAG
Sbjct: 200  IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLEVAG 259

Query: 1012 AAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRK 1191
            AA+SAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADD+KLKSIAFPSIGSGR 
Sbjct: 260  AAISAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRN 319

Query: 1192 RFPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDAN 1350
             FPKQTAAQLIL AISSYFVS MSSSIK VYF+LFDSESIGIYVQE  +LDAN
Sbjct: 320  GFPKQTAAQLILKAISSYFVSTMSSSIKTVYFMLFDSESIGIYVQEMAKLDAN 372


>ref|NP_996883.1| core histone macro-H2A.2 [Mus musculus].
          Length = 372

 Score =  420 bits (1079), Expect = e-117
 Identities = 222/351 (63%), Positives = 259/351 (73%), Gaps = 4/351 (1%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGR++RY+KKG  KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20   GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+KGK E I++          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSETILSPPPEKRGRKA 139

Query: 664  XXXXXXXXXXXXXXXARKSKKQGEVS-KAASADSTTEGTPADGFTVLSTKSLFLGQKLQV 840
                               K + + S K  +++ST+E  P DGFT+LS+KSL LGQKL +
Sbjct: 140  ASGKKGGKKSKATKPRTSKKSKAKDSDKEGTSNSTSEDGPGDGFTILSSKSLVLGQKLSL 199

Query: 841  VQADIASIDS---DAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAG 1011
             Q+DI+ I S   + +VHPT  +     E+G  LEK GGKEF+E V ELRK  GPLEVA 
Sbjct: 200  TQSDISHIGSMRVEGIVHPTTAEIDLKEEIGKALEKAGGKEFLETVKELRKSQGPLEVAE 259

Query: 1012 AAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRK 1191
            AAVS   GL AKFVIHC+ P WG+DKCEE LE+T+KNCL+ A+DKKLKS+AFP   SGR 
Sbjct: 260  AAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRN 319

Query: 1192 RFPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLD 1344
             FPKQTAAQ+ L AIS++F    SSS+KNVYF+LFDSESIGIYVQE  +LD
Sbjct: 320  CFPKQTAAQVTLKAISAHFDDSSSSSLKNVYFLLFDSESIGIYVQEMAKLD 370


>ref|NP_034566.1| histone H2A.x [Mus musculus].
          Length = 143

 Score =  142 bits (357), Expect = 9e-34
 Identities = 71/98 (72%), Positives = 81/98 (82%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KGH   R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 597
           H+ LA+ NDEELN+LL GVTIA GGVLPNI   LL KK
Sbjct: 83  HLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120


>ref|NP_835585.3| histone H2A type 2-B [Mus musculus].
          Length = 130

 Score =  141 bits (355), Expect = 2e-33
 Identities = 73/101 (72%), Positives = 82/101 (81%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
           H+ LAV NDEELN+LL GVTIA GGVLPNI   LL KK  S
Sbjct: 83  HLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123


>ref|NP_038577.1| histone H2A type 2-A [Mus musculus].
          Length = 130

 Score =  138 bits (348), Expect = 1e-32
 Identities = 72/104 (69%), Positives = 82/104 (78%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 83  HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>ref|XP_003084967.1| PREDICTED: src substrate cortactin [Mus musculus].
          Length = 291

 Score =  138 bits (348), Expect = 1e-32
 Identities = 72/104 (69%), Positives = 82/104 (78%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 184 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 243

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 244 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 287


>ref|XP_003085904.1| PREDICTED: src substrate cortactin [Mus musculus].
          Length = 291

 Score =  138 bits (348), Expect = 1e-32
 Identities = 72/104 (69%), Positives = 82/104 (78%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 184 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 243

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 244 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 287


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,543,768
Number of extensions: 1320280
Number of successful extensions: 7129
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 6986
Number of HSP's successfully gapped: 58
Length of query: 513
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 407
Effective length of database: 12,433,743
Effective search space: 5060533401
Effective search space used: 5060533401
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002297
         (1540 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003354333.1| PREDICTED: core histone macro-H2A.1 isoform ...   560   e-160
Alignment   gi|XP_003123992.1| PREDICTED: core histone macro-H2A.1 isoform ...   555   e-158
Alignment   gi|XP_003129998.2| PREDICTED: histone H2A.x-like [Sus scrofa].       142   7e-34
Alignment   gi|XP_001926704.1| PREDICTED: histone H2A type 2-B-like [Sus sc...   140   3e-33
Alignment   gi|XP_001925399.1| PREDICTED: histone H2A type 1-A-like [Sus sc...   139   6e-33
Alignment   gi|XP_003125835.2| PREDICTED: histone H2A type 2-A-like [Sus sc...   138   7e-33
Alignment   gi|XP_001927061.2| PREDICTED: core histone macro-H2A.2, partial...   138   1e-32
Alignment   gi|XP_003361239.1| PREDICTED: histone H2A type 1-like [Sus scro...   137   1e-32
Alignment   gi|XP_003356623.1| PREDICTED: histone H2A type 1-F-like [Sus sc...   137   1e-32
Alignment   gi|XP_001928674.3| PREDICTED: histone H2A type 1-F-like [Sus sc...   137   1e-32

>ref|XP_003354333.1| PREDICTED: core histone macro-H2A.1 isoform 2 [Sus scrofa].
          Length = 371

 Score =  560 bits (1443), Expect = e-160
 Identities = 293/352 (83%), Positives = 308/352 (87%), Gaps = 3/352 (0%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20   GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139

Query: 664  XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQVV 843
                           ARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKL ++
Sbjct: 140  SQKKPVSKKTGGKKGARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI 199

Query: 844  QADIASI---DSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAGA 1014
             ++I+++   + +A+++PTN D     ++GNTLEKKGGKEFVEAVLELRKKNGPLEVAGA
Sbjct: 200  HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLEVAGA 259

Query: 1015 AVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRKR 1194
            AVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGR  
Sbjct: 260  AVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNG 319

Query: 1195 FPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDAN 1350
            FPKQTAAQLIL AISSYFVS MSSSIK VYFVLFDSESIGIYVQE  +LDAN
Sbjct: 320  FPKQTAAQLILRAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN 371


>ref|XP_003123992.1| PREDICTED: core histone macro-H2A.1 isoform 1 [Sus scrofa].
          Length = 372

 Score =  555 bits (1431), Expect = e-158
 Identities = 293/353 (83%), Positives = 308/353 (87%), Gaps = 4/353 (1%)
 Frame = +1

Query: 304  GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
            GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20   GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79

Query: 484  HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
            HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT          
Sbjct: 80   HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139

Query: 664  XXXXXXXXXXXXXXXARKSKK-QGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQV 840
                           ARKSKK QGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKL +
Sbjct: 140  SQKKPVSKKTGGKKGARKSKKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL 199

Query: 841  VQADIASI---DSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAG 1011
            + ++I+++   + +A+++PTN D     ++GNTLEKKGGKEFVEAVLELRKKNGPLEVAG
Sbjct: 200  IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLEVAG 259

Query: 1012 AAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRK 1191
            AAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGR 
Sbjct: 260  AAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRN 319

Query: 1192 RFPKQTAAQLILXAISSYFVSPMSSSIKNVYFVLFDSESIGIYVQENGQLDAN 1350
             FPKQTAAQLIL AISSYFVS MSSSIK VYFVLFDSESIGIYVQE  +LDAN
Sbjct: 320  GFPKQTAAQLILRAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN 372


>ref|XP_003129998.2| PREDICTED: histone H2A.x-like [Sus scrofa].
          Length = 143

 Score =  142 bits (357), Expect = 7e-34
 Identities = 71/98 (72%), Positives = 81/98 (82%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KGH   R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 597
           H+ LA+ NDEELN+LL GVTIA GGVLPNI   LL KK
Sbjct: 83  HLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120


>ref|XP_001926704.1| PREDICTED: histone H2A type 2-B-like [Sus scrofa].
          Length = 130

 Score =  140 bits (352), Expect = 3e-33
 Identities = 72/101 (71%), Positives = 82/101 (81%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
           H+ LAV NDEELN+LL GVTIA GGVLPNI   LL KK  S
Sbjct: 83  HLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123


>ref|XP_001925399.1| PREDICTED: histone H2A type 1-A-like [Sus scrofa].
          Length = 131

 Score =  139 bits (349), Expect = 6e-33
 Identities = 71/101 (70%), Positives = 82/101 (81%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   RIG GAPVY+AAVLEYLTAEILELAGNA+RDNKK R+ PR
Sbjct: 23  GLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
           H+ LA+ NDEELN+LL GVTIA GGVLPNI   LL KK  S
Sbjct: 83  HLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123


>ref|XP_003125835.2| PREDICTED: histone H2A type 2-A-like [Sus scrofa].
          Length = 130

 Score =  138 bits (348), Expect = 7e-33
 Identities = 72/104 (69%), Positives = 82/104 (78%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 83  HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>ref|XP_001927061.2| PREDICTED: core histone macro-H2A.2, partial [Sus scrofa].
          Length = 197

 Score =  138 bits (347), Expect = 1e-32
 Identities = 77/138 (55%), Positives = 89/138 (64%), Gaps = 1/138 (0%)
 Frame = +1

Query: 421 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 600
           EILELAGNAARDNKK R+ PR     VANDEELNQLLKGVTIASGGVLP IHPELLAKKR
Sbjct: 1   EILELAGNAARDNKKARIAPRXXXXXVANDEELNQLLKGVTIASGGVLPRIHPELLAKKR 60

Query: 601 GSKGKLEAIIT-XXXXXXXXXXXXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGT 777
           G+KGK E I++                          + K  K  +  K  +++ST+E  
Sbjct: 61  GTKGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRSSKKSKPKDSDKEGTSNSTSEDG 120

Query: 778 PADGFTVLSTKSLFLGQK 831
           P DGFT+LS+KSL LGQK
Sbjct: 121 PGDGFTILSSKSLVLGQK 138


>ref|XP_003361239.1| PREDICTED: histone H2A type 1-like [Sus scrofa].
          Length = 130

 Score =  137 bits (346), Expect = 1e-32
 Identities = 71/104 (68%), Positives = 82/104 (78%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 83  HLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHK 126


>ref|XP_003356623.1| PREDICTED: histone H2A type 1-F-like [Sus scrofa].
          Length = 130

 Score =  137 bits (346), Expect = 1e-32
 Identities = 71/104 (68%), Positives = 82/104 (78%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 83  HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>ref|XP_001928674.3| PREDICTED: histone H2A type 1-F-like [Sus scrofa].
          Length = 130

 Score =  137 bits (346), Expect = 1e-32
 Identities = 71/104 (68%), Positives = 82/104 (78%)
 Frame = +1

Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
           G+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23  GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82

Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
           H+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 83  HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,869,790
Number of extensions: 1270526
Number of successful extensions: 5753
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 5677
Number of HSP's successfully gapped: 37
Length of query: 513
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 410
Effective length of database: 8,779,541
Effective search space: 3599611810
Effective search space used: 3599611810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002297
         (1540 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                         406   e-110
Sscrofa_Chr04                                                          78   2e-11
Sscrofa_Chr07                                                          70   4e-09
gb|GL893849.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...    62   1e-06
Sscrofa_Chr05                                                          62   1e-06

>Sscrofa_Chr02 
||          Length = 162569375

 Score =  406 bits (205), Expect = e-110
 Identities = 205/205 (100%)
 Strand = Plus / Minus

                                                                             
Query: 214       tgagcttactgatccatctccagggccaccgccatgtccagccggggtgggaagaagaag 273
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143133707 tgagcttactgatccatctccagggccaccgccatgtccagccggggtgggaagaagaag 143133648

                                                                             
Query: 274       tccaccaaaacctcccggtccgccaaggcgggcgtcatcttccccgtgggccggatgctg 333
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143133647 tccaccaaaacctcccggtccgccaaggcgggcgtcatcttccccgtgggccggatgctg 143133588

                                                                             
Query: 334       cggtacatcaagaaaggccaccccaagtacaggattggagtgggggcgccggtgtacatg 393
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143133587 cggtacatcaagaaaggccaccccaagtacaggattggagtgggggcgccggtgtacatg 143133528

                                          
Query: 394       gccgccgtcctggagtacctgacag 418
                 |||||||||||||||||||||||||
Sbjct: 143133527 gccgccgtcctggagtacctgacag 143133503



 Score =  406 bits (205), Expect = e-110
 Identities = 205/205 (100%)
 Strand = Plus / Plus

                                                                             
Query: 214       tgagcttactgatccatctccagggccaccgccatgtccagccggggtgggaagaagaag 273
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143260511 tgagcttactgatccatctccagggccaccgccatgtccagccggggtgggaagaagaag 143260570

                                                                             
Query: 274       tccaccaaaacctcccggtccgccaaggcgggcgtcatcttccccgtgggccggatgctg 333
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143260571 tccaccaaaacctcccggtccgccaaggcgggcgtcatcttccccgtgggccggatgctg 143260630

                                                                             
Query: 334       cggtacatcaagaaaggccaccccaagtacaggattggagtgggggcgccggtgtacatg 393
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143260631 cggtacatcaagaaaggccaccccaagtacaggattggagtgggggcgccggtgtacatg 143260690

                                          
Query: 394       gccgccgtcctggagtacctgacag 418
                 |||||||||||||||||||||||||
Sbjct: 143260691 gccgccgtcctggagtacctgacag 143260715



 Score =  396 bits (200), Expect = e-107
 Identities = 200/200 (100%)
 Strand = Plus / Minus

                                                                             
Query: 524       agctgctaaaaggagtcaccatagccagcggaggggtgttaccgaacatccacccggagt 583
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143111262 agctgctaaaaggagtcaccatagccagcggaggggtgttaccgaacatccacccggagt 143111203

                                                                             
Query: 584       tgctagcgaagaaacgaggatccaaagggaagttggaagccatcatcacgccacccccag 643
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143111202 tgctagcgaagaaacgaggatccaaagggaagttggaagccatcatcacgccacccccag 143111143

                                                                             
Query: 644       ccaaaaaggccaagtctccgtcccagaagaagcccgtgtctaagaaaacaggcggcaaga 703
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143111142 ccaaaaaggccaagtctccgtcccagaagaagcccgtgtctaagaaaacaggcggcaaga 143111083

                                     
Query: 704       agggggcccggaaatccaag 723
                 ||||||||||||||||||||
Sbjct: 143111082 agggggcccggaaatccaag 143111063



 Score =  379 bits (191), Expect = e-102
 Identities = 315/349 (90%), Gaps = 6/349 (1%)
 Strand = Plus / Minus

                                                                             
Query: 1195      tttccgaagcagacggcagctcagctgatcctganggccatctccagctacttcgtgtca 1254
                 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 143055190 tttccgaagcagacggcagctcagctgatcctgagggccatctccagctacttcgtgtca 143055131

                                                                             
Query: 1255      cccatgtcctcttccatcaaaaacgtgtattttgtgctgtttgacagcgagagtataggc 1314
                  |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 143055130 accatgtcctcttccatcaaaacggtgtattttgtgctgtttgacagcgagagtataggc 143055071

                                                                             
Query: 1315      atctacgtgcaggaaaatggcca-gctggacgcaaactangctgaagaactgcagaaaca 1373
                 |||||||||||||||| |||||| ||||||||| ||||| ||||| ||||||||||| ||
Sbjct: 143055070 atctacgtgcaggaaa-tggccaagctggacgccaactaggctgaggaactgcagaacca 143055012

                                                                             
Query: 1374      gcccggcacatgcccccgcctccacct-gaaagaaaagcaag-aaatatccccctccgct 1431
                 |||||   |||||||||||||||| || |||||||| ||||| |||||  ||||||||||
Sbjct: 143055011 gcccgcaccatgcccccgcctccaacttgaaagaaa-gcaagaaaataatcccctccgct 143054953

                                                                             
Query: 1432      cctcggggaaggcgggaacctcttcaatttacatttttgcccatcaaggaaaaatgaggt 1491
                 |||||||| |||||||||||  |||| |||   ||||||| |||| ||| ||||||||||
Sbjct: 143054952 cctcgggggaggcgggaaccctttcattttcagtttttgctcatctagggaaaatgaggt 143054893

                                                                  
Query: 1492      tttgggtttcaagtttaatggtttttgaccttcaaaaaggtttttccgt 1540
                 ||| |||||| |||||||| ||||||||||||| |||| ||||||||||
Sbjct: 143054892 ttt-ggtttccagtttaattgtttttgaccttctaaaatgtttttccgt 143054845



 Score =  353 bits (178), Expect = 2e-94
 Identities = 178/178 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1011      agctgctgtcagtgcgggccatggcctgcccgccaagtttgtgatccactgtaacagtcc 1070
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143063794 agctgctgtcagtgcgggccatggcctgcccgccaagtttgtgatccactgtaacagtcc 143063735

                                                                             
Query: 1071      cgtgtggggtgcagacaagtgtgaggagcttctggaaaagacagtgaagaactgcttggc 1130
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143063734 cgtgtggggtgcagacaagtgtgaggagcttctggaaaagacagtgaagaactgcttggc 143063675

                                                                           
Query: 1131      cctggcagacgataagaagctcaagtccatcgcctttccatccatcggcagcggcagg 1188
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143063674 cctggcagacgataagaagctcaagtccatcgcctttccatccatcggcagcggcagg 143063617



 Score =  220 bits (111), Expect = 2e-54
 Identities = 111/111 (100%)
 Strand = Plus / Minus

                                                                             
Query: 721       aagaagcagggagaagtcagcaaggcagccagcgccgacagcacaactgagggcactccc 780
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143080925 aagaagcagggagaagtcagcaaggcagccagcgccgacagcacaactgagggcactccc 143080866

                                                                    
Query: 781       gccgacggcttcaccgtgctgtccaccaagagcctctttctcggccagaag 831
                 |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143080865 gccgacggcttcaccgtgctgtccaccaagagcctctttctcggccagaag 143080815



 Score =  220 bits (111), Expect = 2e-54
 Identities = 111/111 (100%)
 Strand = Plus / Minus

                                                                             
Query: 415       acagcggagattctggaactggctggcaacgcagcaagagacaacaagaagggccgggtc 474
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143111796 acagcggagattctggaactggctggcaacgcagcaagagacaacaagaagggccgggtc 143111737

                                                                    
Query: 475       accccccgacacatcctgctggccgtggccaacgatgaagagctcaatcag 525
                 |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143111736 accccccgacacatcctgctggccgtggccaacgatgaagagctcaatcag 143111686



 Score =  186 bits (94), Expect = 2e-44
 Identities = 94/94 (100%)
 Strand = Plus / Minus

                                                                             
Query: 830       agttgcaagttgtacaggctgacattgcctcgatcgacagtgacgctgtcgttcacccga 889
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143071124 agttgcaagttgtacaggctgacattgcctcgatcgacagtgacgctgtcgttcacccga 143071065

                                                   
Query: 890       caaacactgacttctacaccggtggtgaagtagg 923
                 ||||||||||||||||||||||||||||||||||
Sbjct: 143071064 caaacactgacttctacaccggtggtgaagtagg 143071031



 Score =  176 bits (89), Expect = 2e-41
 Identities = 92/93 (98%)
 Strand = Plus / Minus

                                                                             
Query: 920       taggaaacacgctggagaagaagggtggcaaggagtttgtggaagctgttctggaactcc 979
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143066402 taggaaacacgctggagaagaagggtggcaaggagtttgtggaagctgttctggaactcc 143066343

                                                  
Query: 980       ggaaaaagaacgggcccttggaagtagccggag 1012
                 |||||||||| ||||||||||||||||||||||
Sbjct: 143066342 ggaaaaagaatgggcccttggaagtagccggag 143066310


>Sscrofa_Chr04 
||          Length = 143465943

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                             
Query: 379       gcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactggct 438
                 ||||| || |||||||| || ||||| ||||||||||| ||||| |||||||| ||||| 
Sbjct: 108550319 gcgcccgtctacatggcggcggtcctcgagtacctgaccgcggaaattctggagctggcg 108550378

                                            
Query: 439       ggcaacgcagcaagagacaacaagaag 465
                 |||||||| ||  ||||||||||||||
Sbjct: 108550379 ggcaacgcggcgcgagacaacaagaag 108550405



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                             
Query: 379       gcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactggct 438
                 |||||||||||| |||| || || |||||||||||||| ||||| || ||||| ||||| 
Sbjct: 108551052 gcgccggtgtacctggcggcagtgctggagtacctgaccgcggaaatcctggagctggcg 108550993

                                            
Query: 439       ggcaacgcagcaagagacaacaagaag 465
                 |||||||| ||  ||||||||||||||
Sbjct: 108550992 ggcaacgcggcgcgagacaacaagaag 108550966



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                             
Query: 379       gcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactggct 438
                 ||||| || |||||||| || ||||| ||||||||||| ||||| |||||||| ||||| 
Sbjct: 108845121 gcgcccgtctacatggcggcggtcctcgagtacctgaccgcggaaattctggagctggcg 108845180

                                            
Query: 439       ggcaacgcagcaagagacaacaagaag 465
                 |||||||| ||  ||||||||||||||
Sbjct: 108845181 ggcaacgcggcgcgagacaacaagaag 108845207



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                             
Query: 379       gcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactggct 438
                 ||||| || |||||||| || || |||||||||||||| ||||| || ||||| ||||| 
Sbjct: 108523919 gcgcccgtctacatggcggcggtgctggagtacctgaccgcggaaatcctggagctggcg 108523860

                                            
Query: 439       ggcaacgcagcaagagacaacaagaag 465
                 |||||||| ||  ||||||||||||||
Sbjct: 108523859 ggcaacgcggcgcgagacaacaagaag 108523833



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                             
Query: 379       gcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactggct 438
                 ||||| || |||||||| || || |||||||||||||| ||||| || ||||| ||||| 
Sbjct: 108825070 gcgcccgtctacatggcggcggtgctggagtacctgaccgcggaaatcctggagctggcg 108825129

                                            
Query: 439       ggcaacgcagcaagagacaacaagaag 465
                 |||||||| ||  ||||||||||||||
Sbjct: 108825130 ggcaacgcggcgcgagacaacaagaag 108825156


>Sscrofa_Chr07 
||          Length = 134764511

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                            
Query: 376      ggggcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactg 435
                ||||||||||||||| |||| || || |||||||||||||| || ||||| ||||| |||
Sbjct: 23174944 ggggcgccggtgtacttggcggcggtgctggagtacctgacggccgagatcctggagctg 23175003

                           
Query: 436      gctggcaacgc 446
                || ||||||||
Sbjct: 23175004 gcgggcaacgc 23175014



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                            
Query: 376      ggggcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactg 435
                ||||||||||||||| |||| || || |||||||||||||| || ||||| ||||| |||
Sbjct: 23188416 ggggcgccggtgtacttggcggcggtgctggagtacctgacggccgagatcctggagctg 23188357

                           
Query: 436      gctggcaacgc 446
                || ||||||||
Sbjct: 23188356 gcgggcaacgc 23188346



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 403      ctggagtacctgacagcggagattctggaactggctggcaacgcagcaagagacaacaag 462
                |||||||| ||||| || ||||| ||||| ||||| |||||||| ||| |||||||||||
Sbjct: 22088827 ctggagtatctgaccgctgagatcctggagctggcgggcaacgcggcacgagacaacaag 22088768

                   
Query: 463      aag 465
                |||
Sbjct: 22088767 aag 22088765


>gb|GL893849.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2573
          Length = 41526

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                         
Query: 403   ctggagtacctgacagcggagattctggaactggctggcaacgcagcaagagacaacaag 462
             |||||||| ||||| || ||||| ||||| ||||| |||||||| ||| |||||||||||
Sbjct: 15996 ctggagtatctgaccgctgagatcctggagctggcgggcaacgcggcacgagacaacaag 15937

                
Query: 463   aag 465
             |||
Sbjct: 15936 aag 15934


>Sscrofa_Chr05 
||          Length = 111506441

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                            
Query: 379      gcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactggct 438
                |||||||||||| |||| || ||  ||||||||||||| |||||||| |||||  |||||
Sbjct: 61247829 gcgccggtgtacctggcggcggtgttggagtacctgaccgcggagatcctggagttggct 61247888

                                           
Query: 439      ggcaacgcagcaagagacaacaagaag 465
                ||||| || ||  | ||||||||||||
Sbjct: 61247889 ggcaatgccgcgcgggacaacaagaag 61247915


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,604,905
Number of extensions: 295
Number of successful extensions: 295
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 19
Length of query: 1540
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1519
Effective length of database: 2,808,413,156
Effective search space: 4265979583964
Effective search space used: 4265979583964
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)