Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002300
(1034 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039805.1| H2A histone family, member Y [Bos taurus]. 391 e-109
Alignment gi|NP_001069554.1| H2A histone family, member Y2 [Bos taurus]. 278 6e-75
Alignment gi|NP_001073248.1| H2A histone family, member X [Bos taurus]. 142 6e-34
Alignment gi|XP_002686098.1| PREDICTED: histone cluster 2, H2ab [Bos taur... 140 2e-33
Alignment gi|XP_871733.2| PREDICTED: histone cluster 2, H2ab [Bos taurus]. 140 2e-33
Alignment gi|XP_002686102.1| PREDICTED: histone cluster 2, H2aa3-like [Bo... 138 7e-33
Alignment gi|XP_002686100.1| PREDICTED: histone cluster 2, H2aa3-like [Bo... 138 7e-33
Alignment gi|XP_002684120.1| PREDICTED: histone cluster 2, H2aa3-like [Bo... 138 7e-33
Alignment gi|NP_001091566.1| histone cluster 3, H2a [Bos taurus]. 137 1e-32
Alignment gi|NP_001075189.1| histone H2A type 2-C [Bos taurus]. 137 1e-32
>ref|NP_001039805.1| H2A histone family, member Y [Bos taurus].
Length = 371
Score = 391 bits (1004), Expect = e-109
Identities = 206/234 (88%), Positives = 207/234 (88%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139
Query: 664 XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI 843
ARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI
Sbjct: 140 SQKKPVSKKTGGKKGARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI 199
Query: 844 HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVE VLELRK+ GP
Sbjct: 200 HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGP 253
>ref|NP_001069554.1| H2A histone family, member Y2 [Bos taurus].
Length = 372
Score = 278 bits (711), Expect = 6e-75
Identities = 146/235 (62%), Positives = 171/235 (72%), Gaps = 1/235 (0%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGR++RY+KKG KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20 GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT-XXXXXXXXX 660
HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+K K E I++
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKAKSETILSPPPEKRGRKA 139
Query: 661 XXXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL 840
K K + K +++ST+E P DGFT+LS+KSL LGQKL+L
Sbjct: 140 TSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPGDGFTILSSKSLVLGQKLSL 199
Query: 841 IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
S+IS++ VE I++PT A+IDLK+D+G LEK GGKEF+ETV ELRK GP
Sbjct: 200 TQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGP 254
>ref|NP_001073248.1| H2A histone family, member X [Bos taurus].
Length = 143
Score = 142 bits (357), Expect = 6e-34
Identities = 71/98 (72%), Positives = 81/98 (82%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KGH R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 597
H+ LA+ NDEELN+LL GVTIA GGVLPNI LL KK
Sbjct: 83 HLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
>ref|XP_002686098.1| PREDICTED: histone cluster 2, H2ab [Bos taurus].
Length = 130
Score = 140 bits (352), Expect = 2e-33
Identities = 72/101 (71%), Positives = 82/101 (81%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
H+ LAV NDEELN+LL GVTIA GGVLPNI LL KK S
Sbjct: 83 HLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123
>ref|XP_871733.2| PREDICTED: histone cluster 2, H2ab [Bos taurus].
Length = 130
Score = 140 bits (352), Expect = 2e-33
Identities = 72/101 (71%), Positives = 82/101 (81%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
H+ LAV NDEELN+LL GVTIA GGVLPNI LL KK S
Sbjct: 83 HLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123
>ref|XP_002686102.1| PREDICTED: histone cluster 2, H2aa3-like [Bos taurus].
Length = 130
Score = 138 bits (348), Expect = 7e-33
Identities = 72/104 (69%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 83 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>ref|XP_002686100.1| PREDICTED: histone cluster 2, H2aa3-like [Bos taurus].
Length = 130
Score = 138 bits (348), Expect = 7e-33
Identities = 72/104 (69%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 83 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>ref|XP_002684120.1| PREDICTED: histone cluster 2, H2aa3-like [Bos taurus].
Length = 130
Score = 138 bits (348), Expect = 7e-33
Identities = 72/104 (69%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 83 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>ref|NP_001091566.1| histone cluster 3, H2a [Bos taurus].
Length = 130
Score = 137 bits (346), Expect = 1e-32
Identities = 71/104 (68%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 83 HLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHK 126
>ref|NP_001075189.1| histone H2A type 2-C [Bos taurus].
Length = 129
Score = 137 bits (346), Expect = 1e-32
Identities = 71/101 (70%), Positives = 81/101 (80%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S
Sbjct: 83 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTES 123
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,408,440
Number of extensions: 1008973
Number of successful extensions: 5179
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 5126
Number of HSP's successfully gapped: 53
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002300
(1034 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538635.2| PREDICTED: similar to H2A histone family, membe... 388 e-108
Alignment gi|XP_850298.1| PREDICTED: similar to Core histone macro-H2A.2 ... 284 1e-76
Alignment gi|XP_861172.1| PREDICTED: similar to Core histone macro-H2A.2 ... 283 1e-76
Alignment gi|XP_861204.1| PREDICTED: similar to Core histone macro-H2A.2 ... 282 4e-76
Alignment gi|XP_861114.1| PREDICTED: similar to Core histone macro-H2A.2 ... 277 1e-74
Alignment gi|XP_861059.1| PREDICTED: similar to Core histone macro-H2A.2 ... 189 4e-48
Alignment gi|XP_853256.1| PREDICTED: similar to Histone H2A.x (H2a/x) [Ca... 142 7e-34
Alignment gi|XP_540293.2| PREDICTED: similar to histone H2A [Canis famili... 140 3e-33
Alignment gi|XP_850808.1| PREDICTED: similar to Histone H2A.o (H2A/o) (H2... 138 7e-33
Alignment gi|XP_540286.2| PREDICTED: similar to Histone H2A.o (H2A/o) (H2... 138 7e-33
>ref|XP_538635.2| PREDICTED: similar to H2A histone family, member Y isoform 3 [Canis
familiaris].
Length = 412
Score = 388 bits (997), Expect = e-108
Identities = 210/260 (80%), Positives = 214/260 (82%), Gaps = 1/260 (0%)
Frame = +1
Query: 229 ISRATAMXXXXXXXXXXXXXXXXXXGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLE 408
+++ATAM GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLE
Sbjct: 35 LNKATAMSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLE 94
Query: 409 YLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELL 588
YLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELL
Sbjct: 95 YLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELL 154
Query: 589 AKKRGSKGKLEAIITXXXXXXXXXXXXXXXXXXXXXXXXXARKS-KKQGEVSKAASADST 765
AKKRGSKGKLEAIIT ARKS KKQGEVSKAASADST
Sbjct: 155 AKKRGSKGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADST 214
Query: 766 TEGTPADGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLE 945
TEGTPADGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLE
Sbjct: 215 TEGTPADGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLE 274
Query: 946 KKGGKEFVETVLELRKRMGP 1005
KKGGKEFVE VLELRK+ GP
Sbjct: 275 KKGGKEFVEAVLELRKKNGP 294
>ref|XP_850298.1| PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2)
(mH2A2) isoform 3 [Canis familiaris].
Length = 372
Score = 284 bits (726), Expect = 1e-76
Identities = 151/236 (63%), Positives = 176/236 (74%), Gaps = 2/236 (0%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGR++RY+KKG KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20 GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+KGK EAI++
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSEAILS-PPPEKRGRK 138
Query: 664 XXXXXXXXXXXXXXXARKSKK--QGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLN 837
R SKK G + K +++ST+E P DGFT+LS+KSL LGQKL+
Sbjct: 139 AASGKKGGKKSKAAKPRTSKKVSPGRLDKEGTSNSTSEDGPGDGFTILSSKSLVLGQKLS 198
Query: 838 LIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
L S+IS++ VE I++PT A+IDLK+D+G LEK GGKEF+ETV ELRK GP
Sbjct: 199 LTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGP 254
>ref|XP_861172.1| PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2)
(mH2A2) isoform 6 [Canis familiaris].
Length = 363
Score = 283 bits (725), Expect = 1e-76
Identities = 153/242 (63%), Positives = 175/242 (72%), Gaps = 8/242 (3%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGR++RY+KKG KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20 GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+KGK EAI++
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSEAILS---------- 129
Query: 664 XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGT--------PADGFTVLSTKSLF 819
A KK G+ SK+ DS EGT P DGFT+LS+KSL
Sbjct: 130 ------PPPEKRGRKAASGKKGGKKSKSKPKDSDKEGTSNSTSEDGPGDGFTILSSKSLV 183
Query: 820 LGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRM 999
LGQKL+L S+IS++ VE I++PT A+IDLK+D+G LEK GGKEF+ETV ELRK
Sbjct: 184 LGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQ 243
Query: 1000 GP 1005
GP
Sbjct: 244 GP 245
>ref|XP_861204.1| PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2)
(mH2A2) isoform 7 [Canis familiaris].
Length = 372
Score = 282 bits (721), Expect = 4e-76
Identities = 148/235 (62%), Positives = 173/235 (73%), Gaps = 1/235 (0%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGR++RY+KKG KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20 GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT-XXXXXXXXX 660
HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+KGK EAI++
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSEAILSPPPEKRGRKA 139
Query: 661 XXXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL 840
K K + K +++ST+E P DGFT+LS+KSL LGQKL+L
Sbjct: 140 ASGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPGDGFTILSSKSLVLGQKLSL 199
Query: 841 IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
S+IS++ VE I++PT A+IDLK+D+G LEK GGKEF+ETV ELRK GP
Sbjct: 200 TQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGP 254
>ref|XP_861114.1| PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2)
(mH2A2) isoform 5 [Canis familiaris].
Length = 388
Score = 277 bits (709), Expect = 1e-74
Identities = 150/251 (59%), Positives = 174/251 (69%), Gaps = 17/251 (6%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGR++RY+KKG KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20 GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+KGK EAI++
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSEAILSPPPEKRGRKA 139
Query: 664 XXXXXXXXXXXXXXXA-----------------RKSKKQGEVSKAASADSTTEGTPADGF 792
RK K Q K +++ST+E P DGF
Sbjct: 140 ASGKKGGKKSKAAKPRTSKKVSPGRLCARDSDNRKLKDQKMSDKEGTSNSTSEDGPGDGF 199
Query: 793 TVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVE 972
T+LS+KSL LGQKL+L S+IS++ VE I++PT A+IDLK+D+G LEK GGKEF+E
Sbjct: 200 TILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLE 259
Query: 973 TVLELRKRMGP 1005
TV ELRK GP
Sbjct: 260 TVKELRKSQGP 270
>ref|XP_861059.1| PREDICTED: similar to Core histone macro-H2A.2 (Histone macroH2A2)
(mH2A2) isoform 4 [Canis familiaris].
Length = 182
Score = 189 bits (480), Expect = 4e-48
Identities = 103/159 (64%), Positives = 116/159 (72%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGR++RY+KKG KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20 GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+KGK EAI++
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSEAILS---------- 129
Query: 664 XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTP 780
A KK G+ SKAA ++ + +P
Sbjct: 130 ------PPPEKRGRKAASGKKGGKKSKAAKPRTSKKVSP 162
>ref|XP_853256.1| PREDICTED: similar to Histone H2A.x (H2a/x) [Canis familiaris].
Length = 242
Score = 142 bits (357), Expect = 7e-34
Identities = 71/98 (72%), Positives = 81/98 (82%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KGH R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 122 GLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 181
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 597
H+ LA+ NDEELN+LL GVTIA GGVLPNI LL KK
Sbjct: 182 HLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 219
>ref|XP_540293.2| PREDICTED: similar to histone H2A [Canis familiaris].
Length = 193
Score = 140 bits (352), Expect = 3e-33
Identities = 72/101 (71%), Positives = 82/101 (81%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 86 GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 145
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
H+ LAV NDEELN+LL GVTIA GGVLPNI LL KK S
Sbjct: 146 HLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 186
>ref|XP_850808.1| PREDICTED: similar to Histone H2A.o (H2A/o) (H2A.2) (H2a-615)
[Canis familiaris].
Length = 130
Score = 138 bits (348), Expect = 7e-33
Identities = 72/104 (69%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 83 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>ref|XP_540286.2| PREDICTED: similar to Histone H2A.o (H2A/o) (H2A.2) (H2a-615)
[Canis familiaris].
Length = 130
Score = 138 bits (348), Expect = 7e-33
Identities = 72/104 (69%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 83 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,591,618
Number of extensions: 929607
Number of successful extensions: 5311
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 5213
Number of HSP's successfully gapped: 43
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002300
(1034 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004884.1| core histone macro-H2A.1 isoform 2 [Homo sapien... 391 e-109
Alignment gi|NP_001035248.1| core histone macro-H2A.1 isoform 2 [Homo sap... 391 e-109
Alignment gi|NP_613258.2| core histone macro-H2A.1 isoform 3 [Homo sapien... 386 e-107
Alignment gi|NP_613075.1| core histone macro-H2A.1 isoform 1 [Homo sapien... 339 3e-93
Alignment gi|NP_061119.1| core histone macro-H2A.2 [Homo sapiens]. 280 1e-75
Alignment gi|NP_002096.1| histone H2A.x [Homo sapiens]. 142 7e-34
Alignment gi|NP_778235.1| histone H2A type 2-B [Homo sapiens]. 140 2e-33
Alignment gi|NP_734466.1| histone H2A type 1-A [Homo sapiens]. 139 6e-33
Alignment gi|NP_001035807.1| histone H2A type 2-A [Homo sapiens]. 138 7e-33
Alignment gi|NP_003507.1| histone H2A type 2-A [Homo sapiens]. 138 7e-33
>ref|NP_004884.1| core histone macro-H2A.1 isoform 2 [Homo sapiens].
Length = 371
Score = 391 bits (1004), Expect = e-109
Identities = 206/234 (88%), Positives = 207/234 (88%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139
Query: 664 XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI 843
ARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI
Sbjct: 140 SQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI 199
Query: 844 HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVE VLELRK+ GP
Sbjct: 200 HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGP 253
>ref|NP_001035248.1| core histone macro-H2A.1 isoform 2 [Homo sapiens].
Length = 371
Score = 391 bits (1004), Expect = e-109
Identities = 206/234 (88%), Positives = 207/234 (88%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139
Query: 664 XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI 843
ARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI
Sbjct: 140 SQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI 199
Query: 844 HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVE VLELRK+ GP
Sbjct: 200 HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGP 253
>ref|NP_613258.2| core histone macro-H2A.1 isoform 3 [Homo sapiens].
Length = 372
Score = 386 bits (992), Expect = e-107
Identities = 206/235 (87%), Positives = 207/235 (88%), Gaps = 1/235 (0%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139
Query: 664 XXXXXXXXXXXXXXXARKS-KKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL 840
ARKS KKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL
Sbjct: 140 SQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL 199
Query: 841 IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVE VLELRK+ GP
Sbjct: 200 IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGP 254
>ref|NP_613075.1| core histone macro-H2A.1 isoform 1 [Homo sapiens].
Length = 369
Score = 339 bits (869), Expect = 3e-93
Identities = 181/235 (77%), Positives = 194/235 (82%), Gaps = 1/235 (0%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139
Query: 664 XXXXXXXXXXXXXXXARKS-KKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL 840
ARKS KKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKL +
Sbjct: 140 SQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLQV 199
Query: 841 IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
+ ++I A + +A+++PTN D + ++GNTLEKKGGKEFVE VLELRK+ GP
Sbjct: 200 VQADI---ASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVEAVLELRKKNGP 251
>ref|NP_061119.1| core histone macro-H2A.2 [Homo sapiens].
Length = 372
Score = 280 bits (717), Expect = 1e-75
Identities = 147/235 (62%), Positives = 172/235 (73%), Gaps = 1/235 (0%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGR++RY+KKG KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20 GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT-XXXXXXXXX 660
HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+KGK E I++
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSETILSPPPEKRGRKA 139
Query: 661 XXXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL 840
K K + K +++ST+E P DGFT+LS+KSL LGQKL+L
Sbjct: 140 TSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPGDGFTILSSKSLVLGQKLSL 199
Query: 841 IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
S+IS++ VE I++PT A+IDLK+D+G LEK GGKEF+ETV ELRK GP
Sbjct: 200 TQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGP 254
>ref|NP_002096.1| histone H2A.x [Homo sapiens].
Length = 143
Score = 142 bits (357), Expect = 7e-34
Identities = 71/98 (72%), Positives = 81/98 (82%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KGH R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 597
H+ LA+ NDEELN+LL GVTIA GGVLPNI LL KK
Sbjct: 83 HLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
>ref|NP_778235.1| histone H2A type 2-B [Homo sapiens].
Length = 130
Score = 140 bits (352), Expect = 2e-33
Identities = 72/101 (71%), Positives = 82/101 (81%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
H+ LAV NDEELN+LL GVTIA GGVLPNI LL KK S
Sbjct: 83 HLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123
>ref|NP_734466.1| histone H2A type 1-A [Homo sapiens].
Length = 131
Score = 139 bits (349), Expect = 6e-33
Identities = 71/101 (70%), Positives = 82/101 (81%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ RIG GAPVY+AAVLEYLTAEILELAGNA+RDNKK R+ PR
Sbjct: 23 GLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
H+ LA+ NDEELN+LL GVTIA GGVLPNI LL KK S
Sbjct: 83 HLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123
>ref|NP_001035807.1| histone H2A type 2-A [Homo sapiens].
Length = 130
Score = 138 bits (348), Expect = 7e-33
Identities = 72/104 (69%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 83 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>ref|NP_003507.1| histone H2A type 2-A [Homo sapiens].
Length = 130
Score = 138 bits (348), Expect = 7e-33
Identities = 72/104 (69%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 83 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,608,164
Number of extensions: 891927
Number of successful extensions: 5046
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 4970
Number of HSP's successfully gapped: 32
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002300
(1034 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001152985.1| core histone macro-H2A.1 isoform 2 [Mus musc... 389 e-108
Alignment gi|NP_036145.1| core histone macro-H2A.1 isoform 1 [Mus musculu... 385 e-107
Alignment gi|NP_001152987.1| core histone macro-H2A.1 isoform 4 [Mus musc... 341 6e-94
Alignment gi|NP_001152986.1| core histone macro-H2A.1 isoform 3 [Mus musc... 336 2e-92
Alignment gi|NP_996883.1| core histone macro-H2A.2 [Mus musculus]. 279 3e-75
Alignment gi|NP_034566.1| histone H2A.x [Mus musculus]. 142 6e-34
Alignment gi|NP_835585.3| histone H2A type 2-B [Mus musculus]. 141 9e-34
Alignment gi|NP_038577.1| histone H2A type 2-A [Mus musculus]. 138 6e-33
Alignment gi|XP_003084967.1| PREDICTED: src substrate cortactin [Mus musc... 138 6e-33
Alignment gi|XP_003085904.1| PREDICTED: src substrate cortactin [Mus musc... 138 6e-33
>ref|NP_001152985.1| core histone macro-H2A.1 isoform 2 [Mus musculus].
Length = 371
Score = 389 bits (1000), Expect = e-108
Identities = 205/234 (87%), Positives = 206/234 (88%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139
Query: 664 XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI 843
ARKSKKQGEVSKAASADSTTEGTP DGFTVLSTKSLFLGQKLNLI
Sbjct: 140 SQKKPVAKKTGGKKGARKSKKQGEVSKAASADSTTEGTPTDGFTVLSTKSLFLGQKLNLI 199
Query: 844 HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVE VLELRK+ GP
Sbjct: 200 HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGP 253
>ref|NP_036145.1| core histone macro-H2A.1 isoform 1 [Mus musculus].
Length = 372
Score = 385 bits (988), Expect = e-107
Identities = 205/235 (87%), Positives = 206/235 (87%), Gaps = 1/235 (0%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139
Query: 664 XXXXXXXXXXXXXXXARKS-KKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL 840
ARKS KKQGEVSKAASADSTTEGTP DGFTVLSTKSLFLGQKLNL
Sbjct: 140 SQKKPVAKKTGGKKGARKSKKKQGEVSKAASADSTTEGTPTDGFTVLSTKSLFLGQKLNL 199
Query: 841 IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVE VLELRK+ GP
Sbjct: 200 IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGP 254
>ref|NP_001152987.1| core histone macro-H2A.1 isoform 4 [Mus musculus].
Length = 368
Score = 341 bits (874), Expect = 6e-94
Identities = 180/234 (76%), Positives = 192/234 (82%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139
Query: 664 XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI 843
ARKSKKQGEVSKAASADSTTEGTP DGFTVLSTKSLFLGQKL ++
Sbjct: 140 SQKKPVAKKTGGKKGARKSKKQGEVSKAASADSTTEGTPTDGFTVLSTKSLFLGQKLQVV 199
Query: 844 HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
++I A + +A+++PTN D ++GNTLEKKGGKEFVE VLELRK+ GP
Sbjct: 200 QADI---ASIDSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGP 250
>ref|NP_001152986.1| core histone macro-H2A.1 isoform 3 [Mus musculus].
Length = 369
Score = 336 bits (862), Expect = 2e-92
Identities = 180/235 (76%), Positives = 192/235 (81%), Gaps = 1/235 (0%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139
Query: 664 XXXXXXXXXXXXXXXARKS-KKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL 840
ARKS KKQGEVSKAASADSTTEGTP DGFTVLSTKSLFLGQKL +
Sbjct: 140 SQKKPVAKKTGGKKGARKSKKKQGEVSKAASADSTTEGTPTDGFTVLSTKSLFLGQKLQV 199
Query: 841 IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
+ ++I A + +A+++PTN D ++GNTLEKKGGKEFVE VLELRK+ GP
Sbjct: 200 VQADI---ASIDSDAVVHPTNTDFYTGGEVGNTLEKKGGKEFVEAVLELRKKNGP 251
>ref|NP_996883.1| core histone macro-H2A.2 [Mus musculus].
Length = 372
Score = 279 bits (713), Expect = 3e-75
Identities = 146/235 (62%), Positives = 172/235 (73%), Gaps = 1/235 (0%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGR++RY+KKG KYRI VGAPVYMAAV+EYL AEILELAGNAARDNKK R+ PR
Sbjct: 20 GVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT-XXXXXXXXX 660
HILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+KGK E I++
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSETILSPPPEKRGRKA 139
Query: 661 XXXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL 840
K K + K +++ST+E P DGFT+LS+KSL LGQKL+L
Sbjct: 140 ASGKKGGKKSKATKPRTSKKSKAKDSDKEGTSNSTSEDGPGDGFTILSSKSLVLGQKLSL 199
Query: 841 IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
S+IS++ VE I++PT A+IDLK+++G LEK GGKEF+ETV ELRK GP
Sbjct: 200 TQSDISHIGSMRVEGIVHPTTAEIDLKEEIGKALEKAGGKEFLETVKELRKSQGP 254
>ref|NP_034566.1| histone H2A.x [Mus musculus].
Length = 143
Score = 142 bits (357), Expect = 6e-34
Identities = 71/98 (72%), Positives = 81/98 (82%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KGH R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 597
H+ LA+ NDEELN+LL GVTIA GGVLPNI LL KK
Sbjct: 83 HLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
>ref|NP_835585.3| histone H2A type 2-B [Mus musculus].
Length = 130
Score = 141 bits (355), Expect = 9e-34
Identities = 73/101 (72%), Positives = 82/101 (81%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
H+ LAV NDEELN+LL GVTIA GGVLPNI LL KK S
Sbjct: 83 HLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123
>ref|NP_038577.1| histone H2A type 2-A [Mus musculus].
Length = 130
Score = 138 bits (348), Expect = 6e-33
Identities = 72/104 (69%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 83 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>ref|XP_003084967.1| PREDICTED: src substrate cortactin [Mus musculus].
Length = 291
Score = 138 bits (348), Expect = 6e-33
Identities = 72/104 (69%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 184 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 243
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 244 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 287
>ref|XP_003085904.1| PREDICTED: src substrate cortactin [Mus musculus].
Length = 291
Score = 138 bits (348), Expect = 6e-33
Identities = 72/104 (69%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 184 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 243
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 244 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 287
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,028,002
Number of extensions: 738688
Number of successful extensions: 4137
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 4044
Number of HSP's successfully gapped: 51
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002300
(1034 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354333.1| PREDICTED: core histone macro-H2A.1 isoform ... 391 e-109
Alignment gi|XP_003123992.1| PREDICTED: core histone macro-H2A.1 isoform ... 386 e-108
Alignment gi|XP_003129998.2| PREDICTED: histone H2A.x-like [Sus scrofa]. 142 4e-34
Alignment gi|XP_001926704.1| PREDICTED: histone H2A type 2-B-like [Sus sc... 140 2e-33
Alignment gi|XP_001925399.1| PREDICTED: histone H2A type 1-A-like [Sus sc... 139 3e-33
Alignment gi|XP_003125835.2| PREDICTED: histone H2A type 2-A-like [Sus sc... 138 4e-33
Alignment gi|XP_001927061.2| PREDICTED: core histone macro-H2A.2, partial... 138 6e-33
Alignment gi|XP_003361239.1| PREDICTED: histone H2A type 1-like [Sus scro... 137 7e-33
Alignment gi|XP_003356623.1| PREDICTED: histone H2A type 1-F-like [Sus sc... 137 7e-33
Alignment gi|XP_001928674.3| PREDICTED: histone H2A type 1-F-like [Sus sc... 137 7e-33
>ref|XP_003354333.1| PREDICTED: core histone macro-H2A.1 isoform 2 [Sus scrofa].
Length = 371
Score = 391 bits (1004), Expect = e-109
Identities = 206/234 (88%), Positives = 207/234 (88%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139
Query: 664 XXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI 843
ARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI
Sbjct: 140 SQKKPVSKKTGGKKGARKSKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLI 199
Query: 844 HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVE VLELRK+ GP
Sbjct: 200 HSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGP 253
>ref|XP_003123992.1| PREDICTED: core histone macro-H2A.1 isoform 1 [Sus scrofa].
Length = 372
Score = 386 bits (992), Expect = e-108
Identities = 206/235 (87%), Positives = 207/235 (88%), Gaps = 1/235 (0%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR
Sbjct: 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 79
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITXXXXXXXXXX 663
HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIIT
Sbjct: 80 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSP 139
Query: 664 XXXXXXXXXXXXXXXARKS-KKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL 840
ARKS KKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL
Sbjct: 140 SQKKPVSKKTGGKKGARKSKKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNL 199
Query: 841 IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVETVLELRKRMGP 1005
IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVE VLELRK+ GP
Sbjct: 200 IHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGP 254
>ref|XP_003129998.2| PREDICTED: histone H2A.x-like [Sus scrofa].
Length = 143
Score = 142 bits (357), Expect = 4e-34
Identities = 71/98 (72%), Positives = 81/98 (82%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KGH R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 597
H+ LA+ NDEELN+LL GVTIA GGVLPNI LL KK
Sbjct: 83 HLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
>ref|XP_001926704.1| PREDICTED: histone H2A type 2-B-like [Sus scrofa].
Length = 130
Score = 140 bits (352), Expect = 2e-33
Identities = 72/101 (71%), Positives = 82/101 (81%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
H+ LAV NDEELN+LL GVTIA GGVLPNI LL KK S
Sbjct: 83 HLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123
>ref|XP_001925399.1| PREDICTED: histone H2A type 1-A-like [Sus scrofa].
Length = 131
Score = 139 bits (349), Expect = 3e-33
Identities = 71/101 (70%), Positives = 82/101 (81%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ RIG GAPVY+AAVLEYLTAEILELAGNA+RDNKK R+ PR
Sbjct: 23 GLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 606
H+ LA+ NDEELN+LL GVTIA GGVLPNI LL KK S
Sbjct: 83 HLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123
>ref|XP_003125835.2| PREDICTED: histone H2A type 2-A-like [Sus scrofa].
Length = 130
Score = 138 bits (348), Expect = 4e-33
Identities = 72/104 (69%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVYMAAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 83 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>ref|XP_001927061.2| PREDICTED: core histone macro-H2A.2, partial [Sus scrofa].
Length = 197
Score = 138 bits (347), Expect = 6e-33
Identities = 77/138 (55%), Positives = 89/138 (64%), Gaps = 1/138 (0%)
Frame = +1
Query: 421 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 600
EILELAGNAARDNKK R+ PR VANDEELNQLLKGVTIASGGVLP IHPELLAKKR
Sbjct: 1 EILELAGNAARDNKKARIAPRXXXXXVANDEELNQLLKGVTIASGGVLPRIHPELLAKKR 60
Query: 601 GSKGKLEAIIT-XXXXXXXXXXXXXXXXXXXXXXXXXARKSKKQGEVSKAASADSTTEGT 777
G+KGK E I++ + K K + K +++ST+E
Sbjct: 61 GTKGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRSSKKSKPKDSDKEGTSNSTSEDG 120
Query: 778 PADGFTVLSTKSLFLGQK 831
P DGFT+LS+KSL LGQK
Sbjct: 121 PGDGFTILSSKSLVLGQK 138
>ref|XP_003361239.1| PREDICTED: histone H2A type 1-like [Sus scrofa].
Length = 130
Score = 137 bits (346), Expect = 7e-33
Identities = 71/104 (68%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 83 HLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHK 126
>ref|XP_003356623.1| PREDICTED: histone H2A type 1-F-like [Sus scrofa].
Length = 130
Score = 137 bits (346), Expect = 7e-33
Identities = 71/104 (68%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 83 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
>ref|XP_001928674.3| PREDICTED: histone H2A type 1-F-like [Sus scrofa].
Length = 130
Score = 137 bits (346), Expect = 7e-33
Identities = 71/104 (68%), Positives = 82/104 (78%)
Frame = +1
Query: 304 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPR 483
G+ FPVGR+ R ++KG+ R+G GAPVY+AAVLEYLTAEILELAGNAARDNKK R+ PR
Sbjct: 23 GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR 82
Query: 484 HILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 615
H+ LA+ NDEELN+LL VTIA GGVLPNI LL KK S K
Sbjct: 83 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,359,807
Number of extensions: 827179
Number of successful extensions: 3576
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 3526
Number of HSP's successfully gapped: 29
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002300
(1034 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 406 e-111
Sscrofa_Chr04 78 1e-11
Sscrofa_Chr07 70 3e-09
gb|GL893849.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 62 6e-07
Sscrofa_Chr05 62 6e-07
>Sscrofa_Chr02
|| Length = 162569375
Score = 406 bits (205), Expect = e-111
Identities = 205/205 (100%)
Strand = Plus / Minus
Query: 214 tgagcttactgatccatctccagggccaccgccatgtccagccggggtgggaagaagaag 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143133707 tgagcttactgatccatctccagggccaccgccatgtccagccggggtgggaagaagaag 143133648
Query: 274 tccaccaaaacctcccggtccgccaaggcgggcgtcatcttccccgtgggccggatgctg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143133647 tccaccaaaacctcccggtccgccaaggcgggcgtcatcttccccgtgggccggatgctg 143133588
Query: 334 cggtacatcaagaaaggccaccccaagtacaggattggagtgggggcgccggtgtacatg 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143133587 cggtacatcaagaaaggccaccccaagtacaggattggagtgggggcgccggtgtacatg 143133528
Query: 394 gccgccgtcctggagtacctgacag 418
|||||||||||||||||||||||||
Sbjct: 143133527 gccgccgtcctggagtacctgacag 143133503
Score = 406 bits (205), Expect = e-111
Identities = 205/205 (100%)
Strand = Plus / Plus
Query: 214 tgagcttactgatccatctccagggccaccgccatgtccagccggggtgggaagaagaag 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143260511 tgagcttactgatccatctccagggccaccgccatgtccagccggggtgggaagaagaag 143260570
Query: 274 tccaccaaaacctcccggtccgccaaggcgggcgtcatcttccccgtgggccggatgctg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143260571 tccaccaaaacctcccggtccgccaaggcgggcgtcatcttccccgtgggccggatgctg 143260630
Query: 334 cggtacatcaagaaaggccaccccaagtacaggattggagtgggggcgccggtgtacatg 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143260631 cggtacatcaagaaaggccaccccaagtacaggattggagtgggggcgccggtgtacatg 143260690
Query: 394 gccgccgtcctggagtacctgacag 418
|||||||||||||||||||||||||
Sbjct: 143260691 gccgccgtcctggagtacctgacag 143260715
Score = 396 bits (200), Expect = e-108
Identities = 200/200 (100%)
Strand = Plus / Minus
Query: 524 agctgctaaaaggagtcaccatagccagcggaggggtgttaccgaacatccacccggagt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143111262 agctgctaaaaggagtcaccatagccagcggaggggtgttaccgaacatccacccggagt 143111203
Query: 584 tgctagcgaagaaacgaggatccaaagggaagttggaagccatcatcacgccacccccag 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143111202 tgctagcgaagaaacgaggatccaaagggaagttggaagccatcatcacgccacccccag 143111143
Query: 644 ccaaaaaggccaagtctccgtcccagaagaagcccgtgtctaagaaaacaggcggcaaga 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143111142 ccaaaaaggccaagtctccgtcccagaagaagcccgtgtctaagaaaacaggcggcaaga 143111083
Query: 704 agggggcccggaaatccaag 723
||||||||||||||||||||
Sbjct: 143111082 agggggcccggaaatccaag 143111063
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 721 aagaagcagggagaagtcagcaaggcagccagcgccgacagcacaactgagggcactccc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143080925 aagaagcagggagaagtcagcaaggcagccagcgccgacagcacaactgagggcactccc 143080866
Query: 781 gccgacggcttcaccgtgctgtccaccaagagcctctttctcggccagaag 831
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143080865 gccgacggcttcaccgtgctgtccaccaagagcctctttctcggccagaag 143080815
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 415 acagcggagattctggaactggctggcaacgcagcaagagacaacaagaagggccgggtc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143111796 acagcggagattctggaactggctggcaacgcagcaagagacaacaagaagggccgggtc 143111737
Query: 475 accccccgacacatcctgctggccgtggccaacgatgaagagctcaatcag 525
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143111736 accccccgacacatcctgctggccgtggccaacgatgaagagctcaatcag 143111686
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 830 agctgaaccttattcacagtgaaatcagtaatttagccggctttgaggtggaggccataa 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143073163 agctgaaccttattcacagtgaaatcagtaatttagccggctttgaggtggaggccataa 143073104
Query: 890 tcaatcctaccaatgctgacattgaccttaaagatgacctagg 932
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143073103 tcaatcctaccaatgctgacattgaccttaaagatgacctagg 143073061
Score = 99.6 bits (50), Expect = 3e-18
Identities = 77/87 (88%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 928 ctaggaaacacgctggnnnnnnngggtggcaaggaatttgtggaaactgttctggaactc 987
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct: 143066403 ctaggaaacacgctggagaagaagggtggcaaggagtttgtggaagctgttctggaactc 143066344
Query: 988 cgg-aaaagaatgggcccttggaagta 1013
||| |||||||||||||||||||||||
Sbjct: 143066343 cggaaaaagaatgggcccttggaagta 143066317
>Sscrofa_Chr04
|| Length = 143465943
Score = 77.8 bits (39), Expect = 1e-11
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 379 gcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactggct 438
||||| || |||||||| || ||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 108550319 gcgcccgtctacatggcggcggtcctcgagtacctgaccgcggaaattctggagctggcg 108550378
Query: 439 ggcaacgcagcaagagacaacaagaag 465
|||||||| || ||||||||||||||
Sbjct: 108550379 ggcaacgcggcgcgagacaacaagaag 108550405
Score = 77.8 bits (39), Expect = 1e-11
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 379 gcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactggct 438
|||||||||||| |||| || || |||||||||||||| ||||| || ||||| |||||
Sbjct: 108551052 gcgccggtgtacctggcggcagtgctggagtacctgaccgcggaaatcctggagctggcg 108550993
Query: 439 ggcaacgcagcaagagacaacaagaag 465
|||||||| || ||||||||||||||
Sbjct: 108550992 ggcaacgcggcgcgagacaacaagaag 108550966
Score = 77.8 bits (39), Expect = 1e-11
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 379 gcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactggct 438
||||| || |||||||| || ||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 108845121 gcgcccgtctacatggcggcggtcctcgagtacctgaccgcggaaattctggagctggcg 108845180
Query: 439 ggcaacgcagcaagagacaacaagaag 465
|||||||| || ||||||||||||||
Sbjct: 108845181 ggcaacgcggcgcgagacaacaagaag 108845207
Score = 69.9 bits (35), Expect = 3e-09
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 379 gcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactggct 438
||||| || |||||||| || || |||||||||||||| ||||| || ||||| |||||
Sbjct: 108523919 gcgcccgtctacatggcggcggtgctggagtacctgaccgcggaaatcctggagctggcg 108523860
Query: 439 ggcaacgcagcaagagacaacaagaag 465
|||||||| || ||||||||||||||
Sbjct: 108523859 ggcaacgcggcgcgagacaacaagaag 108523833
Score = 69.9 bits (35), Expect = 3e-09
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 379 gcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactggct 438
||||| || |||||||| || || |||||||||||||| ||||| || ||||| |||||
Sbjct: 108825070 gcgcccgtctacatggcggcggtgctggagtacctgaccgcggaaatcctggagctggcg 108825129
Query: 439 ggcaacgcagcaagagacaacaagaag 465
|||||||| || ||||||||||||||
Sbjct: 108825130 ggcaacgcggcgcgagacaacaagaag 108825156
>Sscrofa_Chr07
|| Length = 134764511
Score = 69.9 bits (35), Expect = 3e-09
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 376 ggggcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactg 435
||||||||||||||| |||| || || |||||||||||||| || ||||| ||||| |||
Sbjct: 23174944 ggggcgccggtgtacttggcggcggtgctggagtacctgacggccgagatcctggagctg 23175003
Query: 436 gctggcaacgc 446
|| ||||||||
Sbjct: 23175004 gcgggcaacgc 23175014
Score = 69.9 bits (35), Expect = 3e-09
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 376 ggggcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactg 435
||||||||||||||| |||| || || |||||||||||||| || ||||| ||||| |||
Sbjct: 23188416 ggggcgccggtgtacttggcggcggtgctggagtacctgacggccgagatcctggagctg 23188357
Query: 436 gctggcaacgc 446
|| ||||||||
Sbjct: 23188356 gcgggcaacgc 23188346
Score = 61.9 bits (31), Expect = 6e-07
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 403 ctggagtacctgacagcggagattctggaactggctggcaacgcagcaagagacaacaag 462
|||||||| ||||| || ||||| ||||| ||||| |||||||| ||| |||||||||||
Sbjct: 22088827 ctggagtatctgaccgctgagatcctggagctggcgggcaacgcggcacgagacaacaag 22088768
Query: 463 aag 465
|||
Sbjct: 22088767 aag 22088765
>gb|GL893849.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2573
Length = 41526
Score = 61.9 bits (31), Expect = 6e-07
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 403 ctggagtacctgacagcggagattctggaactggctggcaacgcagcaagagacaacaag 462
|||||||| ||||| || ||||| ||||| ||||| |||||||| ||| |||||||||||
Sbjct: 15996 ctggagtatctgaccgctgagatcctggagctggcgggcaacgcggcacgagacaacaag 15937
Query: 463 aag 465
|||
Sbjct: 15936 aag 15934
>Sscrofa_Chr05
|| Length = 111506441
Score = 61.9 bits (31), Expect = 6e-07
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 379 gcgccggtgtacatggccgccgtcctggagtacctgacagcggagattctggaactggct 438
|||||||||||| |||| || || ||||||||||||| |||||||| ||||| |||||
Sbjct: 61247829 gcgccggtgtacctggcggcggtgttggagtacctgaccgcggagatcctggagttggct 61247888
Query: 439 ggcaacgcagcaagagacaacaagaag 465
||||| || || | ||||||||||||
Sbjct: 61247889 ggcaatgccgcgcgggacaacaagaag 61247915
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,805,081
Number of extensions: 123
Number of successful extensions: 123
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 17
Length of query: 1034
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1013
Effective length of database: 2,808,413,156
Effective search space: 2844922527028
Effective search space used: 2844922527028
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)