Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002306
(1070 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068968.1| testican-1 [Bos taurus]. 253 2e-67
Alignment gi|NP_001094585.1| testican-2 [Bos taurus]. 244 1e-64
Alignment gi|NP_001017950.1| follistatin-related protein 1 precursor [Bos... 53 4e-07
Alignment gi|XP_001254149.2| PREDICTED: follistatin-like 1, partial [Bos ... 53 4e-07
Alignment gi|XP_002694239.1| PREDICTED: neurexin 2-like [Bos taurus]. 53 5e-07
Alignment gi|XP_604151.4| PREDICTED: neurexin 2-like [Bos taurus]. 53 5e-07
Alignment gi|XP_002689233.1| PREDICTED: follistatin-like 4 [Bos taurus]. 51 2e-06
Alignment gi|NP_001192405.1| tomoregulin-1 [Bos taurus]. 49 6e-06
Alignment gi|XP_002689913.1| PREDICTED: tomoregulin-1-like [Bos taurus]. 49 6e-06
>ref|NP_001068968.1| testican-1 [Bos taurus].
Length = 442
Score = 253 bits (647), Expect = 2e-67
Identities = 121/246 (49%), Positives = 157/246 (63%), Gaps = 1/246 (0%)
Frame = +3
Query: 336 PAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLN 515
P G+FLD+ QWLSTVS+Y+R+ WNRFRDEVEDDYFR W+P + FDQALDPAKDPCL
Sbjct: 33 PNNGNFLDNDQWLSTVSEYERDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPAKDPCLK 91
Query: 516 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG-SPPSTCRQCLGVSMSPVC 692
+KC H+VC+ Q TA+C+ ++ L K HK G S C+ C + VC
Sbjct: 92 VKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGTVVHKHWVGPSNLVKCKPCPAAQSAMVC 151
Query: 693 GSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVST 872
GSDGH Y+S+CKLE+ AC G+ ++ C+G CPC + K CT E R +++
Sbjct: 152 GSDGHTYTSKCKLEFHACSTGRSLTTLCDGPCPCLPEPEPPKHKAEKNACTDKELRNLAS 211
Query: 873 RLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQP 1052
RL+DWF ALHE ++ S + RFDTSILP ++SLGWMF +LD NYDLLLD
Sbjct: 212 RLKDWFGALHEDANRVINPTSS-ETAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHS 270
Query: 1053 ELGSFY 1070
E+ + Y
Sbjct: 271 EINAIY 276
>ref|NP_001094585.1| testican-2 [Bos taurus].
Length = 424
Score = 244 bits (622), Expect = 1e-64
Identities = 112/241 (46%), Positives = 157/241 (65%), Gaps = 1/241 (0%)
Frame = +3
Query: 345 GSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKC 524
G+F++D+QWLS++SQY + WNRFRDEVEDDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDEQWLSSISQYSGKIKHWNRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 525 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 704
RH+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDG
Sbjct: 96 SRHKVCIAQGYQRAMCISRKKLEHRIKQPAV---KLHGNKDTICKPCHMAHLASVCGSDG 152
Query: 705 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK-RVCTSLEFREVSTRLR 881
H YSS CKLE QAC+ KQ++VRCEG CPCP++ +S+ + K CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLTVRCEGPCPCPTEQAATSTSDSKPETCTGQDLADLGDRLR 212
Query: 882 DWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQPELG 1061
DWF+ LHE+ QN A P S D S+ + ++S+GWMF +LDT+ DL LDQ EL
Sbjct: 213 DWFQLLHENSKQNGSANSGASP-ASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELA 271
Query: 1062 S 1064
+
Sbjct: 272 A 272
>ref|NP_001017950.1| follistatin-related protein 1 precursor [Bos taurus].
Length = 307
Score = 53.1 bits (126), Expect = 4e-07
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +3
Query: 612 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 782
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 36 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 95
Query: 783 HCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKA 896
HC + S+S VC E+ R+ W +A
Sbjct: 96 HCKEKKSVSPSAS---PVVCYQSNRDELRRRIIQWLEA 130
>ref|XP_001254149.2| PREDICTED: follistatin-like 1, partial [Bos taurus].
Length = 317
Score = 53.1 bits (126), Expect = 4e-07
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +3
Query: 612 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 782
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 16 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 75
Query: 783 HCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKA 896
HC + S+S VC E+ R+ W +A
Sbjct: 76 HCKEKKSVSPSAS---PVVCYQSNRDELRRRIIQWLEA 110
>ref|XP_002694239.1| PREDICTED: neurexin 2-like [Bos taurus].
Length = 2043
Score = 52.8 bits (125), Expect = 5e-07
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = +3
Query: 498 KDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGV 674
+DPC N+ C C+ G TA C+ P+TC LG
Sbjct: 247 RDPCSNVTCSFGSTCVPSADGLTATCLC----------------------PATC---LGA 281
Query: 675 SMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHC-PCP---SDTTRSSSGN 827
PVCGSDG Y S+C+L AC + I + +G C PC SD +R+ N
Sbjct: 282 PEGPVCGSDGSDYPSECQLLRHACAHQENIFKKFDGPCDPCQGFLSDLSRTCRVN 336
Score = 49.7 bits (117), Expect = 4e-06
Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Frame = +3
Query: 612 GAGHKQRRGSPPSTC-RQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV------ 770
GA + G C + C GV PVCGSDG Y S C+LE AC LG++I V
Sbjct: 478 GAMCAVKNGEAECACPKACSGV-YDPVCGSDGITYGSACELEATACALGREIRVARRGPC 536
Query: 771 -RC------------EGHCPCPSDTTRSS 818
RC G C CPS+ S+
Sbjct: 537 DRCGQCRFGALCEAETGRCVCPSECVASA 565
>ref|XP_604151.4| PREDICTED: neurexin 2-like [Bos taurus].
Length = 2043
Score = 52.8 bits (125), Expect = 5e-07
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = +3
Query: 498 KDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGV 674
+DPC N+ C C+ G TA C+ P+TC LG
Sbjct: 247 RDPCSNVTCSFGSTCVPSADGLTATCLC----------------------PATC---LGA 281
Query: 675 SMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHC-PCP---SDTTRSSSGN 827
PVCGSDG Y S+C+L AC + I + +G C PC SD +R+ N
Sbjct: 282 PEGPVCGSDGSDYPSECQLLRHACAHQENIFKKFDGPCDPCQGFLSDLSRTCRVN 336
Score = 49.7 bits (117), Expect = 4e-06
Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Frame = +3
Query: 612 GAGHKQRRGSPPSTC-RQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV------ 770
GA + G C + C GV PVCGSDG Y S C+LE AC LG++I V
Sbjct: 478 GAMCAVKNGEAECACPKACSGV-YDPVCGSDGITYGSACELEATACALGREIRVARRGPC 536
Query: 771 -RC------------EGHCPCPSDTTRSS 818
RC G C CPS+ S+
Sbjct: 537 DRCGQCRFGALCEAETGRCVCPSECVASA 565
>ref|XP_002689233.1| PREDICTED: follistatin-like 4 [Bos taurus].
Length = 843
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +3
Query: 636 GSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSD-TTR 812
G P C + S PVCGSDG Y + C+L AC+LGK+I + C D T
Sbjct: 83 GEPECRCLEACRPSYVPVCGSDGRVYENHCELHRAACLLGKKIVMVRNKDCFLKGDPCTV 142
Query: 813 SSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKA 929
+ +K+V +L+ R + LHE S+ A
Sbjct: 143 ADYARLKKVLLALQSR---------LQPLHEGDSRQDPA 172
>ref|NP_001192405.1| tomoregulin-1 [Bos taurus].
Length = 378
Score = 49.3 bits (116), Expect = 6e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +3
Query: 663 CLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTT 809
C G S +PVC SDG +Y++ C + +C+ +QI +R GHC DT+
Sbjct: 192 CSGYSFNPVCASDGSSYNNPCFVREASCIKQEQIDIRHLGHCTDTDDTS 240
>ref|XP_002689913.1| PREDICTED: tomoregulin-1-like [Bos taurus].
Length = 378
Score = 49.3 bits (116), Expect = 6e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +3
Query: 663 CLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTT 809
C G S +PVC SDG +Y++ C + +C+ +QI +R GHC DT+
Sbjct: 192 CSGYSFNPVCASDGSSYNNPCFVREASCIKQEQIDIRHLGHCTDTDDTS 240
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,694,127
Number of extensions: 1392758
Number of successful extensions: 6206
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6180
Number of HSP's successfully gapped: 11
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002306
(1070 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPA... 245 5e-65
Alignment gi|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPA... 232 5e-61
Alignment gi|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPA... 221 9e-58
Alignment gi|XP_531914.2| PREDICTED: similar to Testican-1 precursor (SPO... 185 7e-47
Alignment gi|XP_850499.1| PREDICTED: similar to Follistatin-related prote... 57 2e-08
Alignment gi|XP_536713.2| PREDICTED: similar to agrin isoform 1 [Canis fa... 53 4e-07
Alignment gi|XP_855650.1| PREDICTED: similar to agrin isoform 2 [Canis fa... 53 4e-07
Alignment gi|XP_867211.1| PREDICTED: similar to transmembrane protein wit... 49 6e-06
Alignment gi|XP_532014.2| PREDICTED: similar to transmembrane protein wit... 49 6e-06
>ref|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 3) [Canis
familiaris].
Length = 443
Score = 245 bits (626), Expect = 5e-65
Identities = 116/157 (73%), Positives = 125/157 (79%)
Frame = +3
Query: 600 VKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCE 779
+KDAG GHKQ RG STC+QC +PVCGSDGH YSSQCKLEYQACVLGKQ+SV CE
Sbjct: 128 MKDAGVGHKQWRGPVSSTCKQCPVAYTNPVCGSDGHTYSSQCKLEYQACVLGKQLSVNCE 187
Query: 780 GHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPEKSR 959
G CPCP D S VKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPE+SR
Sbjct: 188 GRCPCPPDKPTGPSRRVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKALLRPERSR 247
Query: 960 FDTSILPNLQESLGWMFYRLDTNYDLLLDQPELGSFY 1070
FDTSILP ++SLGWMF RLDTNYDLLLDQ ELGS Y
Sbjct: 248 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIY 284
>ref|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 2) isoform 2 [Canis
familiaris].
Length = 424
Score = 232 bits (591), Expect = 5e-61
Identities = 112/241 (46%), Positives = 155/241 (64%), Gaps = 1/241 (0%)
Frame = +3
Query: 345 GSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKC 524
G+F++DKQWLS++SQY + RFRDEVEDDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDKQWLSSISQYSGKIKHGTRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 525 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 704
RH+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDG
Sbjct: 96 SRHKVCIAQGYQRAMCISRKKLEHRIKQPTL---KLPGNKDTICKPCHMAPLASVCGSDG 152
Query: 705 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK-RVCTSLEFREVSTRLR 881
H YSS CKLE QAC+ KQ++VRCEG CPCP++ S+ + K CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQDLADLGDRLR 212
Query: 882 DWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQPELG 1061
DWF+ LHE+ QN A GS S D S+ + ++S+GWMF +LDT+ DL LDQ EL
Sbjct: 213 DWFQLLHENAKQNGSA-GSGANLASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELA 271
Query: 1062 S 1064
+
Sbjct: 272 A 272
>ref|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 2) isoform 1 [Canis
familiaris].
Length = 421
Score = 221 bits (563), Expect = 9e-58
Identities = 109/241 (45%), Positives = 152/241 (63%), Gaps = 1/241 (0%)
Frame = +3
Query: 345 GSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKC 524
G+F++DKQWLS++SQY + RFRD DDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDKQWLSSISQYSGKIKHGTRFRD---DDYIKSWEDNQQGDEALDTTKDPCQKVKC 92
Query: 525 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 704
RH+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDG
Sbjct: 93 SRHKVCIAQGYQRAMCISRKKLEHRIKQPTL---KLPGNKDTICKPCHMAPLASVCGSDG 149
Query: 705 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK-RVCTSLEFREVSTRLR 881
H YSS CKLE QAC+ KQ++VRCEG CPCP++ S+ + K CT + ++ RLR
Sbjct: 150 HTYSSVCKLEQQACLSSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQDLADLGDRLR 209
Query: 882 DWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQPELG 1061
DWF+ LHE+ QN A GS S D S+ + ++S+GWMF +LDT+ DL LDQ EL
Sbjct: 210 DWFQLLHENAKQNGSA-GSGANLASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELA 268
Query: 1062 S 1064
+
Sbjct: 269 A 269
>ref|XP_531914.2| PREDICTED: similar to Testican-1 precursor (SPOCK protein) [Canis
familiaris].
Length = 418
Score = 185 bits (469), Expect = 7e-47
Identities = 90/199 (45%), Positives = 121/199 (60%), Gaps = 3/199 (1%)
Frame = +3
Query: 483 ALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST--- 653
ALDP+KDPCL +KC H+VC+ Q TA+C+ ++ L K +K G PS
Sbjct: 57 ALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAYKHWVG--PSNLVK 114
Query: 654 CRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK 833
C+ C + VCGSDGH Y+S+CKLE+ AC GK +++ C+G CPC + S K
Sbjct: 115 CKPCPAAQSAMVCGSDGHTYTSKCKLEFHACSTGKSLNILCDGPCPCLPEPEPSKHKTEK 174
Query: 834 RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFY 1013
CT E R +++RL+DWF ALHE ++ K S + RFDTSILP ++SLGWMF
Sbjct: 175 NACTDKELRNLASRLKDWFGALHEDANRVIKPTSS-DGAQGRFDTSILPICKDSLGWMFN 233
Query: 1014 RLDTNYDLLLDQPELGSFY 1070
+LD NYDLLLD E+ + Y
Sbjct: 234 KLDMNYDLLLDHSEINAIY 252
>ref|XP_850499.1| PREDICTED: similar to Follistatin-related protein 1 precursor
(Follistatin-like 1) [Canis familiaris].
Length = 403
Score = 57.4 bits (137), Expect = 2e-08
Identities = 64/247 (25%), Positives = 91/247 (36%), Gaps = 2/247 (0%)
Frame = +3
Query: 333 RPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCL 512
R GG+ + D + S + ++ W +D V+D + L C
Sbjct: 79 RGPGGAEVKDLEATSAMKSLRKQEEDWVTAKDLVKDG-----------QEELRSKSKICA 127
Query: 513 NMKCGRHEVCIV--QGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 686
N+ CG C V +G T +CI Q + HK+ P
Sbjct: 128 NVFCGAGRECAVTEKGEPTCLCIEQCK----------PHKR------------------P 159
Query: 687 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREV 866
VCGS+G Y + C+L AC+ G +I V +GHC + S+S VC E+
Sbjct: 160 VCGSNGKTYLNHCELHRDACLTGSKIQVDYDGHCKEKKSVSPSAS---PVVCYQSNRDEL 216
Query: 867 STRLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLD 1046
R+ W +A E +KGS N E L F +D N D LD
Sbjct: 217 RRRIIQWLEA--EIIPDGWFSKGS--------------NYSEILDKYFKNVD-NGDSRLD 259
Query: 1047 QPELGSF 1067
EL F
Sbjct: 260 SSELLKF 266
>ref|XP_536713.2| PREDICTED: similar to agrin isoform 1 [Canis familiaris].
Length = 1943
Score = 53.1 bits (126), Expect = 4e-07
Identities = 38/129 (29%), Positives = 49/129 (37%), Gaps = 19/129 (14%)
Frame = +3
Query: 489 DPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCL 668
D PCL ++C C V+ +G A C+ C+Q
Sbjct: 357 DQPLSPCLGVRCPFGATCAVK-NGEAECV--------------------------CQQVC 389
Query: 669 GVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV-------RC------------EGHCP 791
PVCGSDG Y S C+LE AC LG++I V RC G C
Sbjct: 390 SGIYDPVCGSDGVTYGSTCELEATACALGREIRVARRGPCDRCGQCRFGALCEAETGRCV 449
Query: 792 CPSDTTRSS 818
CPS+ S+
Sbjct: 450 CPSECVASA 458
Score = 52.4 bits (124), Expect = 7e-07
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Frame = +3
Query: 495 AKDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLG 671
++DPC N+ C C+ G TA C+ P+TCR G
Sbjct: 139 SRDPCSNVTCSFGSTCVRSADGQTATCLC----------------------PATCR---G 173
Query: 672 VSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVC 842
PVCGSDG Y S+C+L AC + I + +G C D + + ++ RVC
Sbjct: 174 PPEGPVCGSDGADYPSECQLLRLACTRQENIVKKFDGPC----DPCQGTHHDLSRVC 226
Score = 49.7 bits (117), Expect = 5e-06
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 6/136 (4%)
Frame = +3
Query: 444 YFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVC--IVQGSGTAVCIGQRRLAHSVKDAGA 617
+ + PG F A D C M CG VC GSG A C+ ++ +V
Sbjct: 46 FLNNYKPGTHFTPAPPTPPDACRGMLCGFGAVCEPSAGGSGRASCVCKKSACPAV----- 100
Query: 618 GHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHC--- 788
++PVCGSD YS++C+L+ C ++I + G C
Sbjct: 101 --------------------VAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSR 140
Query: 789 -PCPSDTTRSSSGNVK 833
PC + T S V+
Sbjct: 141 DPCSNVTCSFGSTCVR 156
>ref|XP_855650.1| PREDICTED: similar to agrin isoform 2 [Canis familiaris].
Length = 1962
Score = 53.1 bits (126), Expect = 4e-07
Identities = 38/129 (29%), Positives = 49/129 (37%), Gaps = 19/129 (14%)
Frame = +3
Query: 489 DPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCL 668
D PCL ++C C V+ +G A C+ C+Q
Sbjct: 357 DQPLSPCLGVRCPFGATCAVK-NGEAECV--------------------------CQQVC 389
Query: 669 GVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV-------RC------------EGHCP 791
PVCGSDG Y S C+LE AC LG++I V RC G C
Sbjct: 390 SGIYDPVCGSDGVTYGSTCELEATACALGREIRVARRGPCDRCGQCRFGALCEAETGRCV 449
Query: 792 CPSDTTRSS 818
CPS+ S+
Sbjct: 450 CPSECVASA 458
Score = 52.4 bits (124), Expect = 7e-07
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Frame = +3
Query: 495 AKDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLG 671
++DPC N+ C C+ G TA C+ P+TCR G
Sbjct: 139 SRDPCSNVTCSFGSTCVRSADGQTATCLC----------------------PATCR---G 173
Query: 672 VSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVC 842
PVCGSDG Y S+C+L AC + I + +G C D + + ++ RVC
Sbjct: 174 PPEGPVCGSDGADYPSECQLLRLACTRQENIVKKFDGPC----DPCQGTHHDLSRVC 226
Score = 49.7 bits (117), Expect = 5e-06
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 6/136 (4%)
Frame = +3
Query: 444 YFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVC--IVQGSGTAVCIGQRRLAHSVKDAGA 617
+ + PG F A D C M CG VC GSG A C+ ++ +V
Sbjct: 46 FLNNYKPGTHFTPAPPTPPDACRGMLCGFGAVCEPSAGGSGRASCVCKKSACPAV----- 100
Query: 618 GHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHC--- 788
++PVCGSD YS++C+L+ C ++I + G C
Sbjct: 101 --------------------VAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSR 140
Query: 789 -PCPSDTTRSSSGNVK 833
PC + T S V+
Sbjct: 141 DPCSNVTCSFGSTCVR 156
>ref|XP_867211.1| PREDICTED: similar to transmembrane protein with EGF-like and two
follistatin-like domains 1 isoform 2 [Canis familiaris].
Length = 455
Score = 49.3 bits (116), Expect = 6e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +3
Query: 663 CLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTT 809
C G S +PVC SDG +Y++ C + +C+ +QI +R GHC DT+
Sbjct: 269 CSGYSFNPVCASDGSSYNNPCFVREASCIKQEQIDIRHLGHCTDTDDTS 317
>ref|XP_532014.2| PREDICTED: similar to transmembrane protein with EGF-like and two
follistatin-like domains 1 isoform 1 [Canis familiaris].
Length = 454
Score = 49.3 bits (116), Expect = 6e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +3
Query: 663 CLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTT 809
C G S +PVC SDG +Y++ C + +C+ +QI +R GHC DT+
Sbjct: 268 CSGYSFNPVCASDGSSYNNPCFVREASCIKQEQIDIRHLGHCTDTDDTS 316
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,444,931
Number of extensions: 1413212
Number of successful extensions: 6264
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6229
Number of HSP's successfully gapped: 15
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002306
(1070 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058646.2| testican-3 isoform 2 [Homo sapiens]. 403 e-112
Alignment gi|NP_001191288.1| testican-3 isoform 10 [Homo sapiens]. 403 e-112
Alignment gi|NP_001035249.1| testican-3 isoform 1 [Homo sapiens]. 392 e-109
Alignment gi|NP_001191287.1| testican-3 isoform 9 [Homo sapiens]. 392 e-109
Alignment gi|NP_001191281.1| testican-3 isoform 3 [Homo sapiens]. 339 2e-93
Alignment gi|NP_001191285.1| testican-3 isoform 7 [Homo sapiens]. 306 3e-83
Alignment gi|NP_001191283.1| testican-3 isoform 5 [Homo sapiens]. 286 3e-77
Alignment gi|NP_001191284.1| testican-3 isoform 6 [Homo sapiens]. 247 2e-65
Alignment gi|NP_001191282.1| testican-3 isoform 4 [Homo sapiens]. 246 3e-65
Alignment gi|NP_055582.1| testican-2 isoform 2 [Homo sapiens]. 243 2e-64
>ref|NP_058646.2| testican-3 isoform 2 [Homo sapiens].
Length = 436
Score = 403 bits (1035), Expect = e-112
Identities = 188/247 (76%), Positives = 206/247 (83%)
Frame = +3
Query: 330 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPC 509
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRDEVEDDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWSPGKPFDQALDPAKDPC 90
Query: 510 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 689
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 91 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 150
Query: 690 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 869
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+
Sbjct: 151 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVA 210
Query: 870 TRLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQ 1049
RLRDWFKALHESGSQNKK K LRPE+SRFDTSILP ++SLGWMF RLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1050 PELGSFY 1070
EL S Y
Sbjct: 271 SELRSIY 277
>ref|NP_001191288.1| testican-3 isoform 10 [Homo sapiens].
Length = 316
Score = 403 bits (1035), Expect = e-112
Identities = 188/247 (76%), Positives = 206/247 (83%)
Frame = +3
Query: 330 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPC 509
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRDEVEDDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWSPGKPFDQALDPAKDPC 90
Query: 510 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 689
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 91 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 150
Query: 690 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 869
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+
Sbjct: 151 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVA 210
Query: 870 TRLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQ 1049
RLRDWFKALHESGSQNKK K LRPE+SRFDTSILP ++SLGWMF RLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1050 PELGSFY 1070
EL S Y
Sbjct: 271 SELRSIY 277
>ref|NP_001035249.1| testican-3 isoform 1 [Homo sapiens].
Length = 433
Score = 392 bits (1007), Expect = e-109
Identities = 185/247 (74%), Positives = 203/247 (82%)
Frame = +3
Query: 330 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPC 509
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRD DDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRD---DDYFRTWSPGKPFDQALDPAKDPC 87
Query: 510 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 689
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 88 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 147
Query: 690 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 869
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+
Sbjct: 148 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVA 207
Query: 870 TRLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQ 1049
RLRDWFKALHESGSQNKK K LRPE+SRFDTSILP ++SLGWMF RLDTNYDLLLDQ
Sbjct: 208 NRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 267
Query: 1050 PELGSFY 1070
EL S Y
Sbjct: 268 SELRSIY 274
>ref|NP_001191287.1| testican-3 isoform 9 [Homo sapiens].
Length = 313
Score = 392 bits (1007), Expect = e-109
Identities = 185/247 (74%), Positives = 203/247 (82%)
Frame = +3
Query: 330 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPC 509
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRD DDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRD---DDYFRTWSPGKPFDQALDPAKDPC 87
Query: 510 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 689
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 88 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 147
Query: 690 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 869
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+
Sbjct: 148 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVA 207
Query: 870 TRLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQ 1049
RLRDWFKALHESGSQNKK K LRPE+SRFDTSILP ++SLGWMF RLDTNYDLLLDQ
Sbjct: 208 NRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 267
Query: 1050 PELGSFY 1070
EL S Y
Sbjct: 268 SELRSIY 274
>ref|NP_001191281.1| testican-3 isoform 3 [Homo sapiens].
Length = 385
Score = 339 bits (870), Expect = 2e-93
Identities = 160/212 (75%), Positives = 174/212 (82%)
Frame = +3
Query: 435 EDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAG 614
+DDYFRTWSPG+ FDQALDPAKDPCL MKC RH+VCI Q S TAVCI RRL H +K+AG
Sbjct: 15 QDDYFRTWSPGKPFDQALDPAKDPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAG 74
Query: 615 AGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPC 794
H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV+CEGHCPC
Sbjct: 75 VDHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPC 134
Query: 795 PSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSI 974
PSD S+S NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPE+SRFDTSI
Sbjct: 135 PSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSI 194
Query: 975 LPNLQESLGWMFYRLDTNYDLLLDQPELGSFY 1070
LP ++SLGWMF RLDTNYDLLLDQ EL S Y
Sbjct: 195 LPICKDSLGWMFNRLDTNYDLLLDQSELRSIY 226
>ref|NP_001191285.1| testican-3 isoform 7 [Homo sapiens].
Length = 393
Score = 306 bits (783), Expect = 3e-83
Identities = 153/247 (61%), Positives = 168/247 (68%)
Frame = +3
Query: 330 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPC 509
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRD DDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRD---DDYFRTWSPGKPFDQALDPAKDPC 87
Query: 510 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 689
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 88 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 147
Query: 690 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 869
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR
Sbjct: 148 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKR----------- 196
Query: 870 TRLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQ 1049
FDTSILP ++SLGWMF RLDTNYDLLLDQ
Sbjct: 197 -----------------------------GFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 227
Query: 1050 PELGSFY 1070
EL S Y
Sbjct: 228 SELRSIY 234
>ref|NP_001191283.1| testican-3 isoform 5 [Homo sapiens].
Length = 344
Score = 286 bits (731), Expect = 3e-77
Identities = 137/185 (74%), Positives = 149/185 (80%)
Frame = +3
Query: 516 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCG 695
MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPVCG
Sbjct: 1 MKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCG 60
Query: 696 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTR 875
SDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+ R
Sbjct: 61 SDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANR 120
Query: 876 LRDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQPE 1055
LRDWFKALHESGSQNKK K LRPE+SRFDTSILP ++SLGWMF RLDTNYDLLLDQ E
Sbjct: 121 LRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 180
Query: 1056 LGSFY 1070
L S Y
Sbjct: 181 LRSIY 185
>ref|NP_001191284.1| testican-3 isoform 6 [Homo sapiens].
Length = 340
Score = 247 bits (630), Expect = 2e-65
Identities = 118/160 (73%), Positives = 131/160 (81%)
Frame = +3
Query: 591 AHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV 770
+ ++K+AG H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV
Sbjct: 22 SETMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISV 81
Query: 771 RCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPE 950
+CEGHCPCPSD S+S NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPE
Sbjct: 82 KCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPE 141
Query: 951 KSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQPELGSFY 1070
+SRFDTSILP ++SLGWMF RLDTNYDLLLDQ EL S Y
Sbjct: 142 RSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSIY 181
>ref|NP_001191282.1| testican-3 isoform 4 [Homo sapiens].
Length = 316
Score = 246 bits (628), Expect = 3e-65
Identities = 118/157 (75%), Positives = 129/157 (82%)
Frame = +3
Query: 600 VKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCE 779
+K+AG H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV+CE
Sbjct: 1 MKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISVKCE 60
Query: 780 GHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPEKSR 959
GHCPCPSD S+S NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPE+SR
Sbjct: 61 GHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPERSR 120
Query: 960 FDTSILPNLQESLGWMFYRLDTNYDLLLDQPELGSFY 1070
FDTSILP ++SLGWMF RLDTNYDLLLDQ EL S Y
Sbjct: 121 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSIY 157
>ref|NP_055582.1| testican-2 isoform 2 [Homo sapiens].
Length = 424
Score = 243 bits (620), Expect = 2e-64
Identities = 113/241 (46%), Positives = 157/241 (65%), Gaps = 1/241 (0%)
Frame = +3
Query: 345 GSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKC 524
G+F++D+QWLS++SQY + WNRFRDEVEDDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDEQWLSSISQYSGKIKHWNRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 525 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 704
RH+VCI QG A+CI +++L H +K + G+ S C+ C ++ VCGSDG
Sbjct: 96 SRHKVCIAQGYQRAMCISRKKLEHRIKQPTV---KLHGNKDSICKPCHMAQLASVCGSDG 152
Query: 705 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK-RVCTSLEFREVSTRLR 881
H YSS CKLE QAC+ KQ++VRCEG CPCP++ +S+ + K CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLAVRCEGPCPCPTEQAATSTADGKPETCTGQDLADLGDRLR 212
Query: 882 DWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQPELG 1061
DWF+ LHE+ QN A P S D S+ + ++S+GWMF +LDT+ DL LDQ EL
Sbjct: 213 DWFQLLHENSKQNGSASSVAGP-ASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELA 271
Query: 1062 S 1064
+
Sbjct: 272 A 272
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,357,537
Number of extensions: 1368688
Number of successful extensions: 5815
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 5785
Number of HSP's successfully gapped: 17
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002306
(1070 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076178.1| testican-3 precursor [Mus musculus]. 398 e-111
Alignment gi|NP_001159936.1| testican-1 isoform 4 precursor [Mus musculus]. 256 3e-68
Alignment gi|NP_033288.2| testican-1 isoform 1 precursor [Mus musculus]. 256 3e-68
Alignment gi|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus]. 251 9e-67
Alignment gi|NP_001159937.1| testican-1 isoform 5 precursor [Mus musculus]. 245 5e-65
Alignment gi|NP_001159935.1| testican-1 isoform 3 precursor [Mus musculus]. 245 5e-65
Alignment gi|NP_443720.1| testican-2 precursor [Mus musculus]. 241 7e-64
Alignment gi|NP_032073.2| follistatin-related protein 1 precursor [Mus mu... 54 2e-07
Alignment gi|NP_067617.3| agrin [Mus musculus]. 52 1e-06
>ref|NP_076178.1| testican-3 precursor [Mus musculus].
Length = 436
Score = 398 bits (1022), Expect = e-111
Identities = 181/247 (73%), Positives = 205/247 (82%)
Frame = +3
Query: 330 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPC 509
GR GG+FLD+KQWL+T+SQYD+E GQWN+FRDEVEDDYFRTW+PG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDEKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWNPGKPFDQALDPAKDPC 90
Query: 510 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 689
L KC RH+VCI Q + TA+CI RRL HS+K+ G HKQ RG P STC+ C SPV
Sbjct: 91 LKTKCSRHKVCITQDAQTALCISHRRLTHSMKEVGGSHKQWRGLPSSTCKPCPIAYASPV 150
Query: 690 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 869
CGSDGH+YSSQCKLEYQACVLGKQIS++CEG CPCPSD + + NVKR C+ LEFREV+
Sbjct: 151 CGSDGHSYSSQCKLEYQACVLGKQISIKCEGRCPCPSDKSMNIGRNVKRACSDLEFREVA 210
Query: 870 TRLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQ 1049
RLRDWFKALHESGSQNKK K LRPE+SRFDTSILP ++SLGWMF RLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKALLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1050 PELGSFY 1070
ELGS Y
Sbjct: 271 SELGSIY 277
>ref|NP_001159936.1| testican-1 isoform 4 precursor [Mus musculus].
Length = 367
Score = 256 bits (653), Expect = 3e-68
Identities = 123/242 (50%), Positives = 157/242 (64%), Gaps = 1/242 (0%)
Frame = +3
Query: 348 SFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKCG 527
+FLD+ QWLSTVSQYDR+ WNRFRDEVEDDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 528 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG-SPPSTCRQCLGVSMSPVCGSDG 704
H+VC+ Q TA+C+ ++ L K HK G S C+ C + VCGSDG
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCKPCPVAQSAMVCGSDG 155
Query: 705 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRD 884
H Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL+D
Sbjct: 156 HTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRLKD 215
Query: 885 WFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQPELGS 1064
WF ALHE ++ K S P + RFDTSILP ++SLGWMF +LD NYDLLLD E+ +
Sbjct: 216 WFGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINA 274
Query: 1065 FY 1070
Y
Sbjct: 275 IY 276
>ref|NP_033288.2| testican-1 isoform 1 precursor [Mus musculus].
Length = 442
Score = 256 bits (653), Expect = 3e-68
Identities = 123/242 (50%), Positives = 157/242 (64%), Gaps = 1/242 (0%)
Frame = +3
Query: 348 SFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKCG 527
+FLD+ QWLSTVSQYDR+ WNRFRDEVEDDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 528 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG-SPPSTCRQCLGVSMSPVCGSDG 704
H+VC+ Q TA+C+ ++ L K HK G S C+ C + VCGSDG
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCKPCPVAQSAMVCGSDG 155
Query: 705 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRD 884
H Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL+D
Sbjct: 156 HTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRLKD 215
Query: 885 WFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQPELGS 1064
WF ALHE ++ K S P + RFDTSILP ++SLGWMF +LD NYDLLLD E+ +
Sbjct: 216 WFGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINA 274
Query: 1065 FY 1070
Y
Sbjct: 275 IY 276
>ref|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus].
Length = 441
Score = 251 bits (640), Expect = 9e-67
Identities = 121/242 (50%), Positives = 154/242 (63%), Gaps = 1/242 (0%)
Frame = +3
Query: 348 SFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKCG 527
+FLD+ QWLSTVSQYDR+ WNRFRDEVEDDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 528 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG-SPPSTCRQCLGVSMSPVCGSDG 704
H+VC+ Q TA+C+ ++ L K HK G S C+ C + VCGSDG
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCKPCPVAQSAMVCGSDG 155
Query: 705 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRD 884
H Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL+D
Sbjct: 156 HTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRLKD 215
Query: 885 WFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQPELGS 1064
WF ALHE N+ K + FDTSILP ++SLGWMF +LD NYDLLLD E+ +
Sbjct: 216 WFGALHEDA--NRVIKPTSSDPAQGFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINA 273
Query: 1065 FY 1070
Y
Sbjct: 274 IY 275
>ref|NP_001159937.1| testican-1 isoform 5 precursor [Mus musculus].
Length = 364
Score = 245 bits (625), Expect = 5e-65
Identities = 121/244 (49%), Positives = 155/244 (63%), Gaps = 3/244 (1%)
Frame = +3
Query: 348 SFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKCG 527
+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCS 92
Query: 528 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 698
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 93 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 150
Query: 699 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 878
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 151 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 210
Query: 879 RDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQPEL 1058
+DWF ALHE ++ K S P + RFDTSILP ++SLGWMF +LD NYDLLLD E+
Sbjct: 211 KDWFGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 269
Query: 1059 GSFY 1070
+ Y
Sbjct: 270 NAIY 273
>ref|NP_001159935.1| testican-1 isoform 3 precursor [Mus musculus].
Length = 439
Score = 245 bits (625), Expect = 5e-65
Identities = 121/244 (49%), Positives = 155/244 (63%), Gaps = 3/244 (1%)
Frame = +3
Query: 348 SFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKCG 527
+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCS 92
Query: 528 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 698
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 93 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 150
Query: 699 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 878
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 151 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 210
Query: 879 RDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQPEL 1058
+DWF ALHE ++ K S P + RFDTSILP ++SLGWMF +LD NYDLLLD E+
Sbjct: 211 KDWFGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 269
Query: 1059 GSFY 1070
+ Y
Sbjct: 270 NAIY 273
>ref|NP_443720.1| testican-2 precursor [Mus musculus].
Length = 423
Score = 241 bits (615), Expect = 7e-64
Identities = 110/241 (45%), Positives = 157/241 (65%), Gaps = 1/241 (0%)
Frame = +3
Query: 345 GSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKC 524
G+F++D+QWLS++SQY + WNRFRDEVEDDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDEQWLSSISQYSGKIKHWNRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 525 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 704
RH+VC+ QG A+CI +++L H +K + G S C+ C ++ VCGSDG
Sbjct: 96 SRHKVCVAQGYQRAMCISRKKLEHRIKQPSL---KLHGGKDSVCKPCHMAQLASVCGSDG 152
Query: 705 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSD-TTRSSSGNVKRVCTSLEFREVSTRLR 881
H YSS CKLE QAC+ KQ++VRCEG CPCP++ +T S++ + CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLAVRCEGPCPCPTEQSTASTTDSKSETCTGQDLADLGDRLR 212
Query: 882 DWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLDQPELG 1061
DWF+ L E+ QN A + P + D S+ + ++S+GWMF +LDT+ DL LDQ EL
Sbjct: 213 DWFQLLRENSKQNGSANSATNP--AGLDKSLGASCKDSIGWMFSKLDTSGDLFLDQTELA 270
Query: 1062 S 1064
+
Sbjct: 271 A 271
>ref|NP_032073.2| follistatin-related protein 1 precursor [Mus musculus].
Length = 306
Score = 54.3 bits (129), Expect = 2e-07
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +3
Query: 612 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 782
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 35 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 94
Query: 783 HCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKA 896
HC + S+S VC E+ RL W +A
Sbjct: 95 HCKEKKSASPSAS---PVVCYQANRDELRRRLIQWLEA 129
>ref|NP_067617.3| agrin [Mus musculus].
Length = 2034
Score = 51.6 bits (122), Expect = 1e-06
Identities = 37/129 (28%), Positives = 47/129 (36%), Gaps = 19/129 (14%)
Frame = +3
Query: 489 DPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCL 668
D PC +C C V+ +G AVC C++
Sbjct: 464 DQTPSPCRGAQCAFGATCTVK-NGKAVC--------------------------ECQRVC 496
Query: 669 GVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV-------RC------------EGHCP 791
PVCGSDG Y S C+LE AC LG++I V RC G C
Sbjct: 497 SGGYDPVCGSDGVTYGSVCELESMACTLGREIRVARRGPCDRCGQCRFGSLCEVETGRCV 556
Query: 792 CPSDTTRSS 818
CPS+ S+
Sbjct: 557 CPSECVESA 565
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,116,824
Number of extensions: 1125917
Number of successful extensions: 4690
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4657
Number of HSP's successfully gapped: 10
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002306
(1070 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa]. 504 e-143
Alignment gi|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa]. 493 e-140
Alignment gi|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa]. 493 e-140
Alignment gi|XP_003360811.1| PREDICTED: testican-2-like, partial [Sus scr... 199 3e-51
Alignment gi|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa]. 193 1e-49
Alignment gi|XP_003354339.1| PREDICTED: testican-1-like [Sus scrofa]. 175 3e-44
Alignment gi|XP_003354335.1| PREDICTED: testican-1-like [Sus scrofa]. 82 4e-16
Alignment gi|XP_003356160.1| PREDICTED: agrin-like [Sus scrofa]. 55 9e-08
Alignment gi|XP_003122088.1| PREDICTED: UPF0439 protein C9orf30 homolog i... 49 4e-06
Alignment gi|XP_003122087.1| PREDICTED: UPF0439 protein C9orf30 homolog i... 49 4e-06
>ref|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa].
Length = 427
Score = 504 bits (1298), Expect = e-143
Identities = 238/248 (95%), Positives = 241/248 (97%)
Frame = +3
Query: 327 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDP 506
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDP
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDP 83
Query: 507 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 686
CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSP
Sbjct: 84 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSP 143
Query: 687 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREV 866
VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSS GNVKRVCTSLEFREV
Sbjct: 144 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 203
Query: 867 STRLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLD 1046
STRLRDWFKALHESGSQNKKAKGSLRPE+SRFDTSILP ++SLGWMF RLDTNYDLLLD
Sbjct: 204 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 263
Query: 1047 QPELGSFY 1070
Q ELGS Y
Sbjct: 264 QSELGSIY 271
>ref|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa].
Length = 424
Score = 493 bits (1270), Expect = e-140
Identities = 235/248 (94%), Positives = 238/248 (95%)
Frame = +3
Query: 327 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDP 506
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD DDYFRTWSPGRAFDQALDPAKDP
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDP 80
Query: 507 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 686
CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSP
Sbjct: 81 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSP 140
Query: 687 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREV 866
VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSS GNVKRVCTSLEFREV
Sbjct: 141 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 200
Query: 867 STRLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLD 1046
STRLRDWFKALHESGSQNKKAKGSLRPE+SRFDTSILP ++SLGWMF RLDTNYDLLLD
Sbjct: 201 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 260
Query: 1047 QPELGSFY 1070
Q ELGS Y
Sbjct: 261 QSELGSIY 268
>ref|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa].
Length = 424
Score = 493 bits (1270), Expect = e-140
Identities = 235/248 (94%), Positives = 238/248 (95%)
Frame = +3
Query: 327 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDP 506
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD DDYFRTWSPGRAFDQALDPAKDP
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDP 80
Query: 507 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 686
CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSP
Sbjct: 81 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSP 140
Query: 687 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREV 866
VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSS GNVKRVCTSLEFREV
Sbjct: 141 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 200
Query: 867 STRLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRLDTNYDLLLD 1046
STRLRDWFKALHESGSQNKKAKGSLRPE+SRFDTSILP ++SLGWMF RLDTNYDLLLD
Sbjct: 201 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 260
Query: 1047 QPELGSFY 1070
Q ELGS Y
Sbjct: 261 QSELGSIY 268
>ref|XP_003360811.1| PREDICTED: testican-2-like, partial [Sus scrofa].
Length = 351
Score = 199 bits (505), Expect = 3e-51
Identities = 94/213 (44%), Positives = 132/213 (61%), Gaps = 1/213 (0%)
Frame = +3
Query: 429 EVEDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKD 608
EVEDDY ++W + D+ALD KDPC +KC RH+VCI QG A+CI +++L H +K
Sbjct: 1 EVEDDYIKSWEDNQQGDEALDTTKDPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQ 60
Query: 609 AGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHC 788
+ G+ + C+ C ++ VCGSDGH YSS CKLE QAC+ KQ++VRCEG C
Sbjct: 61 PAL---KLHGNKDTACKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLTVRCEGPC 117
Query: 789 PCPSDTTRSSSGNVK-RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPEKSRFD 965
PCP++ +S+ + K CT + ++ RLRDWF+ LHE+ QN S D
Sbjct: 118 PCPTEQAATSTADGKPETCTGQDLADLGDRLRDWFQLLHENSKQNGSVSSGAN-LASGLD 176
Query: 966 TSILPNLQESLGWMFYRLDTNYDLLLDQPELGS 1064
S+ + ++S+GWMF +LDT+ DL LDQ EL +
Sbjct: 177 KSLGASCKDSIGWMFSKLDTSADLFLDQMELAA 209
>ref|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa].
Length = 413
Score = 193 bits (491), Expect = 1e-49
Identities = 91/210 (43%), Positives = 129/210 (61%), Gaps = 1/210 (0%)
Frame = +3
Query: 438 DDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGA 617
DDY ++W + D+ALD KDPC +KC RH+VCI QG A+CI +++L H +K
Sbjct: 56 DDYIKSWEDNQQGDEALDTTKDPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPAL 115
Query: 618 GHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCP 797
+ G+ + C+ C ++ VCGSDGH YSS CKLE QAC+ KQ++VRCEG CPCP
Sbjct: 116 ---KLHGNKDTACKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLTVRCEGPCPCP 172
Query: 798 SDTTRSSSGNVK-RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSI 974
++ +S+ + K CT + ++ RLRDWF+ LHE+ QN S D S+
Sbjct: 173 TEQAATSTADGKPETCTGQDLADLGDRLRDWFQLLHENSKQNGSVSSGAN-LASGLDKSL 231
Query: 975 LPNLQESLGWMFYRLDTNYDLLLDQPELGS 1064
+ ++S+GWMF +LDT+ DL LDQ EL +
Sbjct: 232 GASCKDSIGWMFSKLDTSADLFLDQMELAA 261
>ref|XP_003354339.1| PREDICTED: testican-1-like [Sus scrofa].
Length = 271
Score = 175 bits (444), Expect = 3e-44
Identities = 80/154 (51%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Frame = +3
Query: 336 PAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLN 515
P G+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL
Sbjct: 33 PNNGNFLDNDQWLSTVSQYDRDK-YWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLK 88
Query: 516 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG-SPPSTCRQCLGVSMSPVC 692
+KC H+VC+ Q TA+C+ ++ L K HK G S C+ C + + VC
Sbjct: 89 VKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVC 148
Query: 693 GSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPC 794
GSDGH Y+S+CKLE+ AC GK ++ C+G CPC
Sbjct: 149 GSDGHTYTSKCKLEFHACSTGKSLTTLCDGPCPC 182
>ref|XP_003354335.1| PREDICTED: testican-1-like [Sus scrofa].
Length = 258
Score = 82.4 bits (202), Expect = 4e-16
Identities = 40/77 (51%), Positives = 52/77 (67%)
Frame = +3
Query: 840 CTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPEKSRFDTSILPNLQESLGWMFYRL 1019
CT E R +++RL+DWF ALHE ++ K S + RFDTSILP ++SLGWMF +L
Sbjct: 17 CTDKELRNLASRLKDWFGALHEDANRVIKPTSS-DAAQGRFDTSILPICKDSLGWMFNKL 75
Query: 1020 DTNYDLLLDQPELGSFY 1070
D NYDLLLD E+ + Y
Sbjct: 76 DMNYDLLLDHSEINAIY 92
>ref|XP_003356160.1| PREDICTED: agrin-like [Sus scrofa].
Length = 1015
Score = 54.7 bits (130), Expect = 9e-08
Identities = 41/130 (31%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Frame = +3
Query: 462 PGRAFDQALDPA--KDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQR 632
P RA Q L A +DPC N+ C C G TA C+
Sbjct: 38 PLRASHQQLCQAGMRDPCSNITCSFGSTCARSSDGLTATCLC------------------ 79
Query: 633 RGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTR 812
P+TC LG SPVCGSDG Y S+C+L AC + + + +G C D +
Sbjct: 80 ----PATC---LGAPESPVCGSDGTDYPSECQLLRHACARQENVFKKFDGPC----DPCQ 128
Query: 813 SSSGNVKRVC 842
+ ++ RVC
Sbjct: 129 GALNDLSRVC 138
Score = 52.8 bits (125), Expect = 3e-07
Identities = 38/129 (29%), Positives = 49/129 (37%), Gaps = 19/129 (14%)
Frame = +3
Query: 489 DPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCL 668
D PCL ++C C V+ +G A C+ C+Q
Sbjct: 269 DQPPSPCLGVQCPFGATCAVK-NGEAECV--------------------------CQQTC 301
Query: 669 GVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV-------RC------------EGHCP 791
PVCGSDG Y S C+LE AC LG++I V RC G C
Sbjct: 302 SGLYDPVCGSDGVTYGSACELEATACALGQEIRVARRGPCDRCGQCRFGALCEAETGRCV 361
Query: 792 CPSDTTRSS 818
CPS+ S+
Sbjct: 362 CPSECVASA 370
>ref|XP_003122088.1| PREDICTED: UPF0439 protein C9orf30 homolog isoform 2 [Sus scrofa].
Length = 454
Score = 49.3 bits (116), Expect = 4e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +3
Query: 663 CLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTT 809
C G S +PVC SDG +Y++ C + +C+ +QI +R GHC DT+
Sbjct: 268 CSGYSFNPVCASDGSSYNNPCFVREASCIKQEQIDIRHLGHCTDTDDTS 316
>ref|XP_003122087.1| PREDICTED: UPF0439 protein C9orf30 homolog isoform 1 [Sus scrofa].
Length = 378
Score = 49.3 bits (116), Expect = 4e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +3
Query: 663 CLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTT 809
C G S +PVC SDG +Y++ C + +C+ +QI +R GHC DT+
Sbjct: 192 CSGYSFNPVCASDGSSYNNPCFVREASCIKQEQIDIRHLGHCTDTDDTS 240
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,131,071
Number of extensions: 930792
Number of successful extensions: 4047
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4016
Number of HSP's successfully gapped: 11
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002306
(1070 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 720 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 720 bits (363), Expect = 0.0
Identities = 363/363 (100%)
Strand = Plus / Plus
Query: 67 aaccgggagcggcgccgggaagcggctccaggagcctgtccagcgcgtcaggcagggccg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086018 aaccgggagcggcgccgggaagcggctccaggagcctgtccagcgcgtcaggcagggccg 23086077
Query: 127 agcggctcaccagctttgcgccgagccccacctccccacccgctcccggcctgcggtgcc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086078 agcggctcaccagctttgcgccgagccccacctccccacccgctcccggcctgcggtgcc 23086137
Query: 187 ccgatcccgtccgggccaagacgcgcggtcccggccccggtgtgacgcggcccccgtgtc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086138 ccgatcccgtccgggccaagacgcgcggtcccggccccggtgtgacgcggcccccgtgtc 23086197
Query: 247 tccttccccagatgctccgggcgccggccgtgctgtgcgtgtgcgcggccgcctggtgcg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086198 tccttccccagatgctccgggcgccggccgtgctgtgcgtgtgcgcggccgcctggtgcg 23086257
Query: 307 cgcaggctctggcggtggccacgggccggccggccggcggcagttttctggacgacaaac 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086258 cgcaggctctggcggtggccacgggccggccggccggcggcagttttctggacgacaaac 23086317
Query: 367 aatggctcagcacggtgtcccagtacgaccgggaggccgggcagtggaaccgattccgag 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086318 aatggctcagcacggtgtcccagtacgaccgggaggccgggcagtggaaccgattccgag 23086377
Query: 427 acg 429
|||
Sbjct: 23086378 acg 23086380
Score = 246 bits (124), Expect = 2e-62
Identities = 127/128 (99%)
Strand = Plus / Plus
Query: 595 acagtgtgaaagatgcaggagccgggcataagcagcggaggggttccccgccatccacct 654
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 23322392 acagtgtgaaagatgcaggagccgggcataagcagcggaggggtcccccgccatccacct 23322451
Query: 655 gcaggcagtgcttgggggtctccatgagccctgtctgtggctcagatggacatgcctact 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23322452 gcaggcagtgcttgggggtctccatgagccctgtctgtggctcagatggacatgcctact 23322511
Query: 715 cttcccag 722
||||||||
Sbjct: 23322512 cttcccag 23322519
Score = 236 bits (119), Expect = 2e-59
Identities = 122/123 (99%)
Strand = Plus / Plus
Query: 836 agtgtgcaccagcctggagttcagggaggtgtcgaccaggctgcgggactggttcaaggc 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23476186 agtgtgcaccagcctggagttcagggaggtgtcgaccaggctgcgggactggttcaaggc 23476245
Query: 896 ccttcacgagagcgggagccagaacaagaaggccaaaggctccctgcggccggagaaaag 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 23476246 ccttcacgagagcgggagccagaacaagaaggccaaaggctccctgcggccggagagaag 23476305
Query: 956 cag 958
|||
Sbjct: 23476306 cag 23476308
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 483 gctttagatccagctaaagacccgtgcttgaatatgaaatgtggccgccacgaagtgtgc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23259854 gctttagatccagctaaagacccgtgcttgaatatgaaatgtggccgccacgaagtgtgc 23259913
Query: 543 attgtgcaaggttctgggaccgcggtctgcattggccagcggagacttgcccacag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23259914 attgtgcaaggttctgggaccgcggtctgcattggccagcggagacttgcccacag 23259969
Score = 226 bits (114), Expect = 2e-56
Identities = 117/118 (99%)
Strand = Plus / Plus
Query: 720 cagtgcaaactagaataccaggcgtgtgtcttaggaaagcagatctcagtgagatgtgaa 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23328355 cagtgcaaactagaataccaggcgtgtgtcttaggaaagcagatctcagtgagatgtgaa 23328414
Query: 780 gggcattgcccatgtccttcagatacgaccaggagctcaagcggaaatgtgaaaagag 837
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 23328415 gggcattgcccatgtccttcagatacgaccaggagctcaagaggaaatgtgaaaagag 23328472
Score = 163 bits (82), Expect = 2e-37
Identities = 108/114 (94%), Gaps = 2/114 (1%)
Strand = Plus / Plus
Query: 958 gatttgataccagtattttgcccaatctgca-ggaatcacttggctggatgttttacaga 1016
|||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||
Sbjct: 23492515 gatttgataccagtattttgcc-aatctgcaaggattcacttggctggatgtttaacaga 23492573
Query: 1017 ctggacacaaactacgacctgctcctggaccagccggagctggggagcttttac 1070
||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 23492574 ctggacacaaactacgacctgctcctggaccagtcggagctggggagcatttac 23492627
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 436 aggatgattatttccgcacttggagtccaggaagagccttcgatcagg 483
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23216096 aggatgattatttccgcacttggagtccaggaagagccttcgatcagg 23216143
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 gaagcggcgtccgcgggtgggcacccgcgctctgggctt 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 23085952 gaagcggcgtccgcgggtgggcacccgcgctctgggctt 23085990
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,679,527
Number of extensions: 128
Number of successful extensions: 128
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 8
Length of query: 1070
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1049
Effective length of database: 2,808,413,156
Effective search space: 2946025400644
Effective search space used: 2946025400644
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)