Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002309
(1213 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068968.1| testican-1 [Bos taurus]. 271 7e-83
Alignment gi|NP_001094585.1| testican-2 [Bos taurus]. 255 4e-76
Alignment gi|NP_001029474.1| SPARC-like protein 1 [Bos taurus]. 46 3e-07
Alignment gi|NP_001017950.1| follistatin-related protein 1 precursor [Bos... 53 5e-07
Alignment gi|XP_001254149.2| PREDICTED: follistatin-like 1, partial [Bos ... 53 5e-07
Alignment gi|XP_002694239.1| PREDICTED: neurexin 2-like [Bos taurus]. 53 6e-07
Alignment gi|XP_604151.4| PREDICTED: neurexin 2-like [Bos taurus]. 53 6e-07
Alignment gi|XP_002689233.1| PREDICTED: follistatin-like 4 [Bos taurus]. 51 2e-06
Alignment gi|NP_001192405.1| tomoregulin-1 [Bos taurus]. 49 7e-06
Alignment gi|XP_002689913.1| PREDICTED: tomoregulin-1-like [Bos taurus]. 49 7e-06
>ref|NP_001068968.1| testican-1 [Bos taurus].
Length = 442
Score = 271 bits (692), Expect(2) = 7e-83
Identities = 132/260 (50%), Positives = 167/260 (64%), Gaps = 6/260 (2%)
Frame = +2
Query: 338 PAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLN 508
P G+FLD+ QWLSTVS+Y+R+ WNRFRD DDYFR W+P + FDQALDPAKDPCL
Sbjct: 33 PNNGNFLDNDQWLSTVSEYERDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPAKDPCLK 91
Query: 509 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSP 679
+KC H+VC+ Q TA+C+ ++ L K HK G PS C+ C +
Sbjct: 92 VKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGTVVHKHWVG--PSNLVKCKPCPAAQSAM 149
Query: 680 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREV 859
VCGSDGH Y+S+CKLE+ AC G+ ++ C+G CPC + K CT E R +
Sbjct: 150 VCGSDGHTYTSKCKLEFHACSTGRSLTTLCDGPCPCLPEPEPPKHKAEKNACTDKELRNL 209
Query: 860 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 1039
++RL+DWF ALHE ++ S + RFDTSILPICKDSLGWMFN+LD NYDLLLD
Sbjct: 210 ASRLKDWFGALHEDANRVINPTSS-ETAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLD 268
Query: 1040 QSELGSIYLDKNEQCTEAFF 1099
SE+ +IYLDK E C + F
Sbjct: 269 HSEINAIYLDKYEPCIKPLF 288
Score = 56.2 bits (134), Expect(2) = 7e-83
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 1093 LLHSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQK 1209
L +SCD+++D +S NEWCYCFQ+ PCQ E++ IQK
Sbjct: 287 LFNSCDSFKDGKLSNNEWCYCFQKPGGLPCQNEMNRIQK 325
>ref|NP_001094585.1| testican-2 [Bos taurus].
Length = 424
Score = 255 bits (651), Expect(2) = 4e-76
Identities = 120/255 (47%), Positives = 164/255 (64%), Gaps = 4/255 (1%)
Frame = +2
Query: 347 GSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKC 517
G+F++D+QWLS++SQY + WNRFRD DDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDEQWLSSISQYSGKIKHWNRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 518 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 697
RH+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDG
Sbjct: 96 SRHKVCIAQGYQRAMCISRKKLEHRIKQPAV---KLHGNKDTICKPCHMAHLASVCGSDG 152
Query: 698 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK-RVCTSLEFREVSTRLR 874
H YSS CKLE QAC+ KQ++VRCEG CPCP++ +S+ + K CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLTVRCEGPCPCPTEQAATSTSDSKPETCTGQDLADLGDRLR 212
Query: 875 DWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELG 1054
DWF+ LHE+ QN A P S D S+ CKDS+GWMF++LDT+ DL LDQ+EL
Sbjct: 213 DWFQLLHENSKQNGSANSGASP-ASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELA 271
Query: 1055 SIYLDKNEQCTEAFF 1099
+I LDK E C FF
Sbjct: 272 AINLDKYEVCIRPFF 286
Score = 49.3 bits (116), Expect(2) = 4e-76
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQ 1206
+SCDTY+D +S EWC+CF R++ PPC EL IQ
Sbjct: 287 NSCDTYKDGRVSTAEWCFCFWREK-PPCLAELERIQ 321
>ref|NP_001029474.1| SPARC-like protein 1 [Bos taurus].
Length = 654
Score = 45.8 bits (107), Expect(2) = 3e-07
Identities = 55/235 (23%), Positives = 82/235 (34%), Gaps = 33/235 (14%)
Frame = +2
Query: 494 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 673
D CL+ +C R +C G C+ Q P++C +
Sbjct: 421 DSCLSFQCKRGHICKADQHGKPYCVCQ--------------------DPASCPPT--KLL 458
Query: 674 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 838
VCG+D Y+S C L C + G Q+ + G C CT
Sbjct: 459 DQVCGTDNQTYASSCHLFATKCRMERTKKGHQLHLDYFGAC------------KTIPACT 506
Query: 839 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 973
E + R+RDW K + SG N+K + ++ + R D SI
Sbjct: 507 DFEVTQFPLRMRDWLKNILVQLYEPNPEHSGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 566
Query: 974 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFF 1099
+ +D + W F+ LD + D +L SEL + L E C FF
Sbjct: 567 LLRDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHSELAPLRASLVPMEHCITRFF 621
Score = 27.3 bits (59), Expect(2) = 3e-07
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 1105 CDTYRDRSISXNEWCYCFQRQQD 1173
CD +D+ I+ EW +CF+ +++
Sbjct: 624 CDPNKDKHITLQEWGHCFEIKEE 646
>ref|NP_001017950.1| follistatin-related protein 1 precursor [Bos taurus].
Length = 307
Score = 53.1 bits (126), Expect = 5e-07
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +2
Query: 605 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 775
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 36 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 95
Query: 776 HCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKA 889
HC + S+S VC E+ R+ W +A
Sbjct: 96 HCKEKKSVSPSAS---PVVCYQSNRDELRRRIIQWLEA 130
>ref|XP_001254149.2| PREDICTED: follistatin-like 1, partial [Bos taurus].
Length = 317
Score = 53.1 bits (126), Expect = 5e-07
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +2
Query: 605 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 775
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 16 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 75
Query: 776 HCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKA 889
HC + S+S VC E+ R+ W +A
Sbjct: 76 HCKEKKSVSPSAS---PVVCYQSNRDELRRRIIQWLEA 110
>ref|XP_002694239.1| PREDICTED: neurexin 2-like [Bos taurus].
Length = 2043
Score = 52.8 bits (125), Expect = 6e-07
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = +2
Query: 491 KDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGV 667
+DPC N+ C C+ G TA C+ P+TC LG
Sbjct: 247 RDPCSNVTCSFGSTCVPSADGLTATCLC----------------------PATC---LGA 281
Query: 668 SMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHC-PCP---SDTTRSSSGN 820
PVCGSDG Y S+C+L AC + I + +G C PC SD +R+ N
Sbjct: 282 PEGPVCGSDGSDYPSECQLLRHACAHQENIFKKFDGPCDPCQGFLSDLSRTCRVN 336
Score = 49.7 bits (117), Expect = 5e-06
Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Frame = +2
Query: 605 GAGHKQRRGSPPSTC-RQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV------ 763
GA + G C + C GV PVCGSDG Y S C+LE AC LG++I V
Sbjct: 478 GAMCAVKNGEAECACPKACSGV-YDPVCGSDGITYGSACELEATACALGREIRVARRGPC 536
Query: 764 -RC------------EGHCPCPSDTTRSS 811
RC G C CPS+ S+
Sbjct: 537 DRCGQCRFGALCEAETGRCVCPSECVASA 565
>ref|XP_604151.4| PREDICTED: neurexin 2-like [Bos taurus].
Length = 2043
Score = 52.8 bits (125), Expect = 6e-07
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = +2
Query: 491 KDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGV 667
+DPC N+ C C+ G TA C+ P+TC LG
Sbjct: 247 RDPCSNVTCSFGSTCVPSADGLTATCLC----------------------PATC---LGA 281
Query: 668 SMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHC-PCP---SDTTRSSSGN 820
PVCGSDG Y S+C+L AC + I + +G C PC SD +R+ N
Sbjct: 282 PEGPVCGSDGSDYPSECQLLRHACAHQENIFKKFDGPCDPCQGFLSDLSRTCRVN 336
Score = 49.7 bits (117), Expect = 5e-06
Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Frame = +2
Query: 605 GAGHKQRRGSPPSTC-RQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV------ 763
GA + G C + C GV PVCGSDG Y S C+LE AC LG++I V
Sbjct: 478 GAMCAVKNGEAECACPKACSGV-YDPVCGSDGITYGSACELEATACALGREIRVARRGPC 536
Query: 764 -RC------------EGHCPCPSDTTRSS 811
RC G C CPS+ S+
Sbjct: 537 DRCGQCRFGALCEAETGRCVCPSECVASA 565
>ref|XP_002689233.1| PREDICTED: follistatin-like 4 [Bos taurus].
Length = 843
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +2
Query: 629 GSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSD-TTR 805
G P C + S PVCGSDG Y + C+L AC+LGK+I + C D T
Sbjct: 83 GEPECRCLEACRPSYVPVCGSDGRVYENHCELHRAACLLGKKIVMVRNKDCFLKGDPCTV 142
Query: 806 SSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKA 922
+ +K+V +L+ R + LHE S+ A
Sbjct: 143 ADYARLKKVLLALQSR---------LQPLHEGDSRQDPA 172
>ref|NP_001192405.1| tomoregulin-1 [Bos taurus].
Length = 378
Score = 49.3 bits (116), Expect = 7e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 656 CLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTT 802
C G S +PVC SDG +Y++ C + +C+ +QI +R GHC DT+
Sbjct: 192 CSGYSFNPVCASDGSSYNNPCFVREASCIKQEQIDIRHLGHCTDTDDTS 240
>ref|XP_002689913.1| PREDICTED: tomoregulin-1-like [Bos taurus].
Length = 378
Score = 49.3 bits (116), Expect = 7e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 656 CLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTT 802
C G S +PVC SDG +Y++ C + +C+ +QI +R GHC DT+
Sbjct: 192 CSGYSFNPVCASDGSSYNNPCFVREASCIKQEQIDIRHLGHCTDTDDTS 240
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,673,106
Number of extensions: 1538701
Number of successful extensions: 9487
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 9412
Number of HSP's successfully gapped: 15
Length of query: 404
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 299
Effective length of database: 14,207,134
Effective search space: 4247933066
Effective search space used: 4247933066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002309
(1213 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPA... 286 6e-94
Alignment gi|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPA... 248 4e-74
Alignment gi|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPA... 243 2e-72
Alignment gi|XP_531914.2| PREDICTED: similar to Testican-1 precursor (SPO... 213 1e-65
Alignment gi|XP_535648.2| PREDICTED: similar to SPARC-like protein 1 prec... 48 2e-07
Alignment gi|XP_850045.1| PREDICTED: similar to SPARC-like protein 1 prec... 48 2e-07
Alignment gi|XP_860591.1| PREDICTED: similar to SPARC-like protein 1 prec... 48 2e-07
Alignment gi|XP_860498.1| PREDICTED: similar to SPARC-like protein 1 prec... 48 2e-07
Alignment gi|XP_850499.1| PREDICTED: similar to Follistatin-related prote... 53 5e-07
Alignment gi|XP_536713.2| PREDICTED: similar to agrin isoform 1 [Canis fa... 53 5e-07
>ref|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 3) [Canis
familiaris].
Length = 443
Score = 286 bits (733), Expect(2) = 6e-94
Identities = 135/169 (79%), Positives = 142/169 (84%)
Frame = +2
Query: 593 VKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCE 772
+KDAG GHKQ RG STC+QC +PVCGSDGH YSSQCKLEYQACVLGKQ+SV CE
Sbjct: 128 MKDAGVGHKQWRGPVSSTCKQCPVAYTNPVCGSDGHTYSSQCKLEYQACVLGKQLSVNCE 187
Query: 773 GHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSR 952
G CPCP D S VKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPERSR
Sbjct: 188 GRCPCPPDKPTGPSRRVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKALLRPERSR 247
Query: 953 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFF 1099
FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCT+AFF
Sbjct: 248 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTKAFF 296
Score = 77.4 bits (189), Expect(2) = 6e-94
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQKR 1212
+SCDTY+D IS NEWCYCFQRQQDPPCQTELS+IQKR
Sbjct: 297 NSCDTYKDSLISNNEWCYCFQRQQDPPCQTELSNIQKR 334
>ref|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 2) isoform 1 [Canis
familiaris].
Length = 421
Score = 248 bits (634), Expect(2) = 4e-74
Identities = 120/252 (47%), Positives = 162/252 (64%), Gaps = 1/252 (0%)
Frame = +2
Query: 347 GSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRH 526
G+F++DKQWLS++SQY + RFRDDDY ++W + D+ALD KDPC +KC RH
Sbjct: 36 GNFMEDKQWLSSISQYSGKIKHGTRFRDDDYIKSWEDNQQGDEALDTTKDPCQKVKCSRH 95
Query: 527 EVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAY 706
+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDGH Y
Sbjct: 96 KVCIAQGYQRAMCISRKKLEHRIKQPTL---KLPGNKDTICKPCHMAPLASVCGSDGHTY 152
Query: 707 SSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK-RVCTSLEFREVSTRLRDWF 883
SS CKLE QAC+ KQ++VRCEG CPCP++ S+ + K CT + ++ RLRDWF
Sbjct: 153 SSVCKLEQQACLSSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQDLADLGDRLRDWF 212
Query: 884 KALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIY 1063
+ LHE+ QN A GS S D S+ CKDS+GWMF++LDT+ DL LDQ+EL +I
Sbjct: 213 QLLHENAKQNGSA-GSGANLASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELAAIN 271
Query: 1064 LDKNEQCTEAFF 1099
LDK E C FF
Sbjct: 272 LDKYEVCIRPFF 283
Score = 49.3 bits (116), Expect(2) = 4e-74
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQ 1206
+SCDTY+D +S EWC+CF R++ PPC EL IQ
Sbjct: 284 NSCDTYKDGRVSTAEWCFCFWREK-PPCLAELERIQ 318
>ref|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 2) isoform 2 [Canis
familiaris].
Length = 424
Score = 243 bits (620), Expect(2) = 2e-72
Identities = 120/255 (47%), Positives = 162/255 (63%), Gaps = 4/255 (1%)
Frame = +2
Query: 347 GSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKC 517
G+F++DKQWLS++SQY + RFRD DDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDKQWLSSISQYSGKIKHGTRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 518 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 697
RH+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDG
Sbjct: 96 SRHKVCIAQGYQRAMCISRKKLEHRIKQPTL---KLPGNKDTICKPCHMAPLASVCGSDG 152
Query: 698 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK-RVCTSLEFREVSTRLR 874
H YSS CKLE QAC+ KQ++VRCEG CPCP++ S+ + K CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQDLADLGDRLR 212
Query: 875 DWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELG 1054
DWF+ LHE+ QN A GS S D S+ CKDS+GWMF++LDT+ DL LDQ+EL
Sbjct: 213 DWFQLLHENAKQNGSA-GSGANLASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELA 271
Query: 1055 SIYLDKNEQCTEAFF 1099
+I LDK E C FF
Sbjct: 272 AINLDKYEVCIRPFF 286
Score = 49.3 bits (116), Expect(2) = 2e-72
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQ 1206
+SCDTY+D +S EWC+CF R++ PPC EL IQ
Sbjct: 287 NSCDTYKDGRVSTAEWCFCFWREK-PPCLAELERIQ 321
>ref|XP_531914.2| PREDICTED: similar to Testican-1 precursor (SPOCK protein) [Canis
familiaris].
Length = 418
Score = 213 bits (542), Expect(2) = 1e-65
Identities = 103/211 (48%), Positives = 133/211 (63%), Gaps = 3/211 (1%)
Frame = +2
Query: 476 ALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST--- 646
ALDP+KDPCL +KC H+VC+ Q TA+C+ ++ L K +K G PS
Sbjct: 57 ALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAYKHWVG--PSNLVK 114
Query: 647 CRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK 826
C+ C + VCGSDGH Y+S+CKLE+ AC GK +++ C+G CPC + S K
Sbjct: 115 CKPCPAAQSAMVCGSDGHTYTSKCKLEFHACSTGKSLNILCDGPCPCLPEPEPSKHKTEK 174
Query: 827 RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFN 1006
CT E R +++RL+DWF ALHE ++ K S + RFDTSILPICKDSLGWMFN
Sbjct: 175 NACTDKELRNLASRLKDWFGALHEDANRVIKPTSS-DGAQGRFDTSILPICKDSLGWMFN 233
Query: 1007 RLDTNYDLLLDQSELGSIYLDKNEQCTEAFF 1099
+LD NYDLLLD SE+ +IYLDK E C + F
Sbjct: 234 KLDMNYDLLLDHSEINAIYLDKYEPCIKPLF 264
Score = 56.2 bits (134), Expect(2) = 1e-65
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 1093 LLHSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQK 1209
L +SCD+++D +S NEWCYCFQ+ PCQ E++ IQK
Sbjct: 263 LFNSCDSFKDGKLSNNEWCYCFQKPGGLPCQNEMNRIQK 301
>ref|XP_535648.2| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 1
[Canis familiaris].
Length = 667
Score = 48.1 bits (113), Expect(2) = 2e-07
Identities = 55/235 (23%), Positives = 82/235 (34%), Gaps = 33/235 (14%)
Frame = +2
Query: 494 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 673
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 434 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 471
Query: 674 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 838
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 472 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 519
Query: 839 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 973
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 520 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 579
Query: 974 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFF 1099
+ +D + W F LD + D +L SEL + L E C FF
Sbjct: 580 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFF 634
Score = 25.8 bits (55), Expect(2) = 2e-07
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 1105 CDTYRDRSISXNEWCYCF 1158
CD +D+ I+ EW +CF
Sbjct: 637 CDPNKDKHITLEEWGHCF 654
>ref|XP_850045.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 2
[Canis familiaris].
Length = 667
Score = 48.1 bits (113), Expect(2) = 2e-07
Identities = 55/235 (23%), Positives = 82/235 (34%), Gaps = 33/235 (14%)
Frame = +2
Query: 494 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 673
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 434 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 471
Query: 674 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 838
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 472 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 519
Query: 839 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 973
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 520 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 579
Query: 974 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFF 1099
+ +D + W F LD + D +L SEL + L E C FF
Sbjct: 580 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFF 634
Score = 25.8 bits (55), Expect(2) = 2e-07
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 1105 CDTYRDRSISXNEWCYCF 1158
CD +D+ I+ EW +CF
Sbjct: 637 CDPNKDKHITLEEWGHCF 654
>ref|XP_860591.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 4
[Canis familiaris].
Length = 656
Score = 48.1 bits (113), Expect(2) = 2e-07
Identities = 55/235 (23%), Positives = 82/235 (34%), Gaps = 33/235 (14%)
Frame = +2
Query: 494 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 673
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 423 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 460
Query: 674 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 838
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 461 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 508
Query: 839 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 973
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 509 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 568
Query: 974 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFF 1099
+ +D + W F LD + D +L SEL + L E C FF
Sbjct: 569 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFF 623
Score = 25.8 bits (55), Expect(2) = 2e-07
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 1105 CDTYRDRSISXNEWCYCF 1158
CD +D+ I+ EW +CF
Sbjct: 626 CDPNKDKHITLEEWGHCF 643
>ref|XP_860498.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 3
[Canis familiaris].
Length = 609
Score = 48.1 bits (113), Expect(2) = 2e-07
Identities = 55/235 (23%), Positives = 82/235 (34%), Gaps = 33/235 (14%)
Frame = +2
Query: 494 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 673
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 376 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 413
Query: 674 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 838
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 414 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 461
Query: 839 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 973
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 462 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 521
Query: 974 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFF 1099
+ +D + W F LD + D +L SEL + L E C FF
Sbjct: 522 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFF 576
Score = 25.8 bits (55), Expect(2) = 2e-07
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 1105 CDTYRDRSISXNEWCYCF 1158
CD +D+ I+ EW +CF
Sbjct: 579 CDPNKDKHITLEEWGHCF 596
>ref|XP_850499.1| PREDICTED: similar to Follistatin-related protein 1 precursor
(Follistatin-like 1) [Canis familiaris].
Length = 403
Score = 53.1 bits (126), Expect = 5e-07
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +2
Query: 605 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 775
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 132 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 191
Query: 776 HCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKA 889
HC + S+S VC E+ R+ W +A
Sbjct: 192 HCKEKKSVSPSAS---PVVCYQSNRDELRRRIIQWLEA 226
>ref|XP_536713.2| PREDICTED: similar to agrin isoform 1 [Canis familiaris].
Length = 1943
Score = 53.1 bits (126), Expect = 5e-07
Identities = 38/129 (29%), Positives = 49/129 (37%), Gaps = 19/129 (14%)
Frame = +2
Query: 482 DPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCL 661
D PCL ++C C V+ +G A C+ C+Q
Sbjct: 357 DQPLSPCLGVRCPFGATCAVK-NGEAECV--------------------------CQQVC 389
Query: 662 GVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV-------RC------------EGHCP 784
PVCGSDG Y S C+LE AC LG++I V RC G C
Sbjct: 390 SGIYDPVCGSDGVTYGSTCELEATACALGREIRVARRGPCDRCGQCRFGALCEAETGRCV 449
Query: 785 CPSDTTRSS 811
CPS+ S+
Sbjct: 450 CPSECVASA 458
Score = 52.4 bits (124), Expect = 9e-07
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Frame = +2
Query: 488 AKDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLG 664
++DPC N+ C C+ G TA C+ P+TCR G
Sbjct: 139 SRDPCSNVTCSFGSTCVRSADGQTATCLC----------------------PATCR---G 173
Query: 665 VSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVC 835
PVCGSDG Y S+C+L AC + I + +G C D + + ++ RVC
Sbjct: 174 PPEGPVCGSDGADYPSECQLLRLACTRQENIVKKFDGPC----DPCQGTHHDLSRVC 226
Score = 49.7 bits (117), Expect = 6e-06
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 6/136 (4%)
Frame = +2
Query: 437 YFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVC--IVQGSGTAVCIGQRRLAHSVKDAGA 610
+ + PG F A D C M CG VC GSG A C+ ++ +V
Sbjct: 46 FLNNYKPGTHFTPAPPTPPDACRGMLCGFGAVCEPSAGGSGRASCVCKKSACPAV----- 100
Query: 611 GHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHC--- 781
++PVCGSD YS++C+L+ C ++I + G C
Sbjct: 101 --------------------VAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSR 140
Query: 782 -PCPSDTTRSSSGNVK 826
PC + T S V+
Sbjct: 141 DPCSNVTCSFGSTCVR 156
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,729,187
Number of extensions: 1574789
Number of successful extensions: 9677
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 9592
Number of HSP's successfully gapped: 27
Length of query: 404
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 299
Effective length of database: 15,374,224
Effective search space: 4596892976
Effective search space used: 4596892976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002309
(1213 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035249.1| testican-3 isoform 1 [Homo sapiens]. 439 e-139
Alignment gi|NP_058646.2| testican-3 isoform 2 [Homo sapiens]. 433 e-138
Alignment gi|NP_001191287.1| testican-3 isoform 9 [Homo sapiens]. 439 e-131
Alignment gi|NP_001191288.1| testican-3 isoform 10 [Homo sapiens]. 433 e-129
Alignment gi|NP_001191281.1| testican-3 isoform 3 [Homo sapiens]. 380 e-122
Alignment gi|NP_001191285.1| testican-3 isoform 7 [Homo sapiens]. 351 e-113
Alignment gi|NP_001191283.1| testican-3 isoform 5 [Homo sapiens]. 327 e-106
Alignment gi|NP_001191284.1| testican-3 isoform 6 [Homo sapiens]. 288 2e-94
Alignment gi|NP_001191282.1| testican-3 isoform 4 [Homo sapiens]. 287 3e-94
Alignment gi|NP_004589.1| testican-1 precursor [Homo sapiens]. 276 2e-84
>ref|NP_001035249.1| testican-3 isoform 1 [Homo sapiens].
Length = 433
Score = 439 bits (1128), Expect(2) = e-139
Identities = 204/256 (79%), Positives = 220/256 (85%)
Frame = +2
Query: 332 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNM 511
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRDDDYFRTWSPG+ FDQALDPAKDPCL M
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDDDYFRTWSPGKPFDQALDPAKDPCLKM 90
Query: 512 KCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGS 691
KC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPVCGS
Sbjct: 91 KCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGS 150
Query: 692 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 871
DGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+ RL
Sbjct: 151 DGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRL 210
Query: 872 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1051
RDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL
Sbjct: 211 RDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 270
Query: 1052 GSIYLDKNEQCTEAFF 1099
SIYLDKNEQCT+AFF
Sbjct: 271 RSIYLDKNEQCTKAFF 286
Score = 77.4 bits (189), Expect(2) = e-139
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQKR 1212
+SCDTY+D IS NEWCYCFQRQQDPPCQTELS+IQKR
Sbjct: 287 NSCDTYKDSLISNNEWCYCFQRQQDPPCQTELSNIQKR 324
>ref|NP_058646.2| testican-3 isoform 2 [Homo sapiens].
Length = 436
Score = 433 bits (1114), Expect(2) = e-138
Identities = 204/259 (78%), Positives = 220/259 (84%), Gaps = 3/259 (1%)
Frame = +2
Query: 332 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPC 502
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRD DDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWSPGKPFDQALDPAKDPC 90
Query: 503 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 682
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 91 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 150
Query: 683 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 862
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+
Sbjct: 151 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVA 210
Query: 863 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1042
RLRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1043 SELGSIYLDKNEQCTEAFF 1099
SEL SIYLDKNEQCT+AFF
Sbjct: 271 SELRSIYLDKNEQCTKAFF 289
Score = 77.4 bits (189), Expect(2) = e-138
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQKR 1212
+SCDTY+D IS NEWCYCFQRQQDPPCQTELS+IQKR
Sbjct: 290 NSCDTYKDSLISNNEWCYCFQRQQDPPCQTELSNIQKR 327
>ref|NP_001191287.1| testican-3 isoform 9 [Homo sapiens].
Length = 313
Score = 439 bits (1128), Expect(2) = e-131
Identities = 204/256 (79%), Positives = 220/256 (85%)
Frame = +2
Query: 332 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNM 511
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRDDDYFRTWSPG+ FDQALDPAKDPCL M
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDDDYFRTWSPGKPFDQALDPAKDPCLKM 90
Query: 512 KCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGS 691
KC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPVCGS
Sbjct: 91 KCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGS 150
Query: 692 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 871
DGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+ RL
Sbjct: 151 DGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRL 210
Query: 872 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1051
RDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL
Sbjct: 211 RDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 270
Query: 1052 GSIYLDKNEQCTEAFF 1099
SIYLDKNEQCT+AFF
Sbjct: 271 RSIYLDKNEQCTKAFF 286
Score = 49.7 bits (117), Expect(2) = e-131
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQ 1170
+SCDTY+D IS NEWCYCFQRQQ
Sbjct: 287 NSCDTYKDSLISNNEWCYCFQRQQ 310
>ref|NP_001191288.1| testican-3 isoform 10 [Homo sapiens].
Length = 316
Score = 433 bits (1114), Expect(2) = e-129
Identities = 204/259 (78%), Positives = 220/259 (84%), Gaps = 3/259 (1%)
Frame = +2
Query: 332 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPC 502
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRD DDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWSPGKPFDQALDPAKDPC 90
Query: 503 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 682
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 91 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 150
Query: 683 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 862
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+
Sbjct: 151 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVA 210
Query: 863 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1042
RLRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1043 SELGSIYLDKNEQCTEAFF 1099
SEL SIYLDKNEQCT+AFF
Sbjct: 271 SELRSIYLDKNEQCTKAFF 289
Score = 49.7 bits (117), Expect(2) = e-129
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQ 1170
+SCDTY+D IS NEWCYCFQRQQ
Sbjct: 290 NSCDTYKDSLISNNEWCYCFQRQQ 313
>ref|NP_001191281.1| testican-3 isoform 3 [Homo sapiens].
Length = 385
Score = 380 bits (975), Expect(2) = e-122
Identities = 179/223 (80%), Positives = 190/223 (85%)
Frame = +2
Query: 431 DDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGA 610
DDYFRTWSPG+ FDQALDPAKDPCL MKC RH+VCI Q S TAVCI RRL H +K+AG
Sbjct: 16 DDYFRTWSPGKPFDQALDPAKDPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGV 75
Query: 611 GHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCP 790
H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCP
Sbjct: 76 DHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCP 135
Query: 791 SDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSIL 970
SD S+S NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPERSRFDTSIL
Sbjct: 136 SDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSIL 195
Query: 971 PICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFF 1099
PICKDSLGWMFNRLDTNYDLLLDQSEL SIYLDKNEQCT+AFF
Sbjct: 196 PICKDSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFF 238
Score = 77.4 bits (189), Expect(2) = e-122
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQKR 1212
+SCDTY+D IS NEWCYCFQRQQDPPCQTELS+IQKR
Sbjct: 239 NSCDTYKDSLISNNEWCYCFQRQQDPPCQTELSNIQKR 276
>ref|NP_001191285.1| testican-3 isoform 7 [Homo sapiens].
Length = 393
Score = 351 bits (901), Expect(2) = e-113
Identities = 171/256 (66%), Positives = 185/256 (72%)
Frame = +2
Query: 332 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNM 511
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRDDDYFRTWSPG+ FDQALDPAKDPCL M
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDDDYFRTWSPGKPFDQALDPAKDPCLKM 90
Query: 512 KCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGS 691
KC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPVCGS
Sbjct: 91 KCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGS 150
Query: 692 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 871
DGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR
Sbjct: 151 DGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKR-------------- 196
Query: 872 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1051
FDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL
Sbjct: 197 --------------------------GFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 230
Query: 1052 GSIYLDKNEQCTEAFF 1099
SIYLDKNEQCT+AFF
Sbjct: 231 RSIYLDKNEQCTKAFF 246
Score = 77.4 bits (189), Expect(2) = e-113
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQKR 1212
+SCDTY+D IS NEWCYCFQRQQDPPCQTELS+IQKR
Sbjct: 247 NSCDTYKDSLISNNEWCYCFQRQQDPPCQTELSNIQKR 284
>ref|NP_001191283.1| testican-3 isoform 5 [Homo sapiens].
Length = 344
Score = 327 bits (838), Expect(2) = e-106
Identities = 156/197 (79%), Positives = 166/197 (84%)
Frame = +2
Query: 509 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCG 688
MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPVCG
Sbjct: 1 MKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCG 60
Query: 689 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTR 868
SDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+ R
Sbjct: 61 SDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANR 120
Query: 869 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 1048
LRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE
Sbjct: 121 LRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 180
Query: 1049 LGSIYLDKNEQCTEAFF 1099
L SIYLDKNEQCT+AFF
Sbjct: 181 LRSIYLDKNEQCTKAFF 197
Score = 77.4 bits (189), Expect(2) = e-106
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQKR 1212
+SCDTY+D IS NEWCYCFQRQQDPPCQTELS+IQKR
Sbjct: 198 NSCDTYKDSLISNNEWCYCFQRQQDPPCQTELSNIQKR 235
>ref|NP_001191284.1| testican-3 isoform 6 [Homo sapiens].
Length = 340
Score = 288 bits (737), Expect(2) = 2e-94
Identities = 137/172 (79%), Positives = 148/172 (86%)
Frame = +2
Query: 584 AHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV 763
+ ++K+AG H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV
Sbjct: 22 SETMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISV 81
Query: 764 RCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPE 943
+CEGHCPCPSD S+S NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPE
Sbjct: 82 KCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPE 141
Query: 944 RSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFF 1099
RSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL SIYLDKNEQCT+AFF
Sbjct: 142 RSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFF 193
Score = 77.4 bits (189), Expect(2) = 2e-94
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQKR 1212
+SCDTY+D IS NEWCYCFQRQQDPPCQTELS+IQKR
Sbjct: 194 NSCDTYKDSLISNNEWCYCFQRQQDPPCQTELSNIQKR 231
>ref|NP_001191282.1| testican-3 isoform 4 [Homo sapiens].
Length = 316
Score = 287 bits (735), Expect(2) = 3e-94
Identities = 137/169 (81%), Positives = 146/169 (86%)
Frame = +2
Query: 593 VKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCE 772
+K+AG H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV+CE
Sbjct: 1 MKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISVKCE 60
Query: 773 GHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSR 952
GHCPCPSD S+S NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPERSR
Sbjct: 61 GHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPERSR 120
Query: 953 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFF 1099
FDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL SIYLDKNEQCT+AFF
Sbjct: 121 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFF 169
Score = 77.4 bits (189), Expect(2) = 3e-94
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQKR 1212
+SCDTY+D IS NEWCYCFQRQQDPPCQTELS+IQKR
Sbjct: 170 NSCDTYKDSLISNNEWCYCFQRQQDPPCQTELSNIQKR 207
>ref|NP_004589.1| testican-1 precursor [Homo sapiens].
Length = 439
Score = 276 bits (706), Expect(2) = 2e-84
Identities = 132/255 (51%), Positives = 167/255 (65%), Gaps = 1/255 (0%)
Frame = +2
Query: 338 PAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKC 517
P G+FLD+ QWLSTVSQYDR+ WNRFRDDDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 33 PNHGNFLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKC 91
Query: 518 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG-SPPSTCRQCLGVSMSPVCGSD 694
H+VC+ Q TA+C+ ++ L K K G S C+ C + VCGSD
Sbjct: 92 SPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAQKHWVGPSNLVKCKPCPVAQSAMVCGSD 151
Query: 695 GHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLR 874
GH+Y+S+CKLE+ AC GK ++ C+G CPC + + CT E R +++RL+
Sbjct: 152 GHSYTSKCKLEFHACSTGKSLATLCDGPCPCLPEPEPPKHKAERSACTDKELRNLASRLK 211
Query: 875 DWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELG 1054
DWF ALHE ++ K S + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 212 DWFGALHEDANRVIKPTSS-NTAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDPSEIN 270
Query: 1055 SIYLDKNEQCTEAFF 1099
+IYLDK E C + F
Sbjct: 271 AIYLDKYEPCIKPLF 285
Score = 56.2 bits (134), Expect(2) = 2e-84
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 1093 LLHSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQK 1209
L +SCD+++D +S NEWCYCFQ+ PCQ E++ IQK
Sbjct: 284 LFNSCDSFKDGKLSNNEWCYCFQKPGGLPCQNEMNRIQK 322
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,559,799
Number of extensions: 1531284
Number of successful extensions: 8765
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 8677
Number of HSP's successfully gapped: 32
Length of query: 404
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 299
Effective length of database: 14,835,944
Effective search space: 4435947256
Effective search space used: 4435947256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002309
(1213 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076178.1| testican-3 precursor [Mus musculus]. 428 e-136
Alignment gi|NP_001159935.1| testican-1 isoform 3 precursor [Mus musculus]. 278 2e-85
Alignment gi|NP_001159937.1| testican-1 isoform 5 precursor [Mus musculus]. 278 2e-85
Alignment gi|NP_033288.2| testican-1 isoform 1 precursor [Mus musculus]. 273 9e-84
Alignment gi|NP_001159936.1| testican-1 isoform 4 precursor [Mus musculus]. 273 9e-84
Alignment gi|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus]. 268 3e-82
Alignment gi|NP_443720.1| testican-2 precursor [Mus musculus]. 252 9e-75
Alignment gi|NP_032073.2| follistatin-related protein 1 precursor [Mus mu... 54 2e-07
Alignment gi|NP_067617.3| agrin [Mus musculus]. 52 1e-06
Alignment gi|NP_034227.3| SPARC-like protein 1 precursor [Mus musculus]. 43 5e-06
>ref|NP_076178.1| testican-3 precursor [Mus musculus].
Length = 436
Score = 428 bits (1101), Expect(2) = e-136
Identities = 197/259 (76%), Positives = 219/259 (84%), Gaps = 3/259 (1%)
Frame = +2
Query: 332 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPC 502
GR GG+FLD+KQWL+T+SQYD+E GQWN+FRD DDYFRTW+PG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDEKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWNPGKPFDQALDPAKDPC 90
Query: 503 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 682
L KC RH+VCI Q + TA+CI RRL HS+K+ G HKQ RG P STC+ C SPV
Sbjct: 91 LKTKCSRHKVCITQDAQTALCISHRRLTHSMKEVGGSHKQWRGLPSSTCKPCPIAYASPV 150
Query: 683 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 862
CGSDGH+YSSQCKLEYQACVLGKQIS++CEG CPCPSD + + NVKR C+ LEFREV+
Sbjct: 151 CGSDGHSYSSQCKLEYQACVLGKQISIKCEGRCPCPSDKSMNIGRNVKRACSDLEFREVA 210
Query: 863 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1042
RLRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKALLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1043 SELGSIYLDKNEQCTEAFF 1099
SELGSIYLDKNEQCT+AFF
Sbjct: 271 SELGSIYLDKNEQCTKAFF 289
Score = 75.5 bits (184), Expect(2) = e-136
Identities = 31/38 (81%), Positives = 34/38 (89%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQKR 1212
+SCDTY+D IS NEWCYCFQRQQDPPC TELS+IQKR
Sbjct: 290 NSCDTYKDSLISNNEWCYCFQRQQDPPCHTELSNIQKR 327
>ref|NP_001159935.1| testican-1 isoform 3 precursor [Mus musculus].
Length = 439
Score = 278 bits (712), Expect(2) = 2e-85
Identities = 133/251 (52%), Positives = 166/251 (66%), Gaps = 1/251 (0%)
Frame = +2
Query: 350 SFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHE 529
+FLD+ QWLSTVSQYDR+ WNRFRDDDYFR W+P + FDQALDP+KDPCL +KC H+
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHK 95
Query: 530 VCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG-SPPSTCRQCLGVSMSPVCGSDGHAY 706
VC+ Q TA+C+ ++ L K HK G S C+ C + VCGSDGH Y
Sbjct: 96 VCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCKPCPVAQSAMVCGSDGHTY 155
Query: 707 SSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFK 886
+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL+DWF
Sbjct: 156 TSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRLKDWFG 215
Query: 887 ALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYL 1066
ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +IYL
Sbjct: 216 ALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYL 274
Query: 1067 DKNEQCTEAFF 1099
DK E C + F
Sbjct: 275 DKYEPCIKPLF 285
Score = 56.6 bits (135), Expect(2) = 2e-85
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 1093 LLHSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQK 1209
L +SCD+++D +S NEWCYCFQ+ PCQ E++ IQK
Sbjct: 284 LFNSCDSFKDGKLSNNEWCYCFQKPAGLPCQNEMNRIQK 322
>ref|NP_001159937.1| testican-1 isoform 5 precursor [Mus musculus].
Length = 364
Score = 278 bits (712), Expect(2) = 2e-85
Identities = 133/251 (52%), Positives = 166/251 (66%), Gaps = 1/251 (0%)
Frame = +2
Query: 350 SFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHE 529
+FLD+ QWLSTVSQYDR+ WNRFRDDDYFR W+P + FDQALDP+KDPCL +KC H+
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHK 95
Query: 530 VCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG-SPPSTCRQCLGVSMSPVCGSDGHAY 706
VC+ Q TA+C+ ++ L K HK G S C+ C + VCGSDGH Y
Sbjct: 96 VCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCKPCPVAQSAMVCGSDGHTY 155
Query: 707 SSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFK 886
+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL+DWF
Sbjct: 156 TSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRLKDWFG 215
Query: 887 ALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYL 1066
ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +IYL
Sbjct: 216 ALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYL 274
Query: 1067 DKNEQCTEAFF 1099
DK E C + F
Sbjct: 275 DKYEPCIKPLF 285
Score = 56.6 bits (135), Expect(2) = 2e-85
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 1093 LLHSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQK 1209
L +SCD+++D +S NEWCYCFQ+ PCQ E++ IQK
Sbjct: 284 LFNSCDSFKDGKLSNNEWCYCFQKPAGLPCQNEMNRIQK 322
>ref|NP_033288.2| testican-1 isoform 1 precursor [Mus musculus].
Length = 442
Score = 273 bits (698), Expect(2) = 9e-84
Identities = 134/256 (52%), Positives = 167/256 (65%), Gaps = 6/256 (2%)
Frame = +2
Query: 350 SFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKCG 520
+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 521 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 691
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 153
Query: 692 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 871
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 154 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 213
Query: 872 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1051
+DWF ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 214 KDWFGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 272
Query: 1052 GSIYLDKNEQCTEAFF 1099
+IYLDK E C + F
Sbjct: 273 NAIYLDKYEPCIKPLF 288
Score = 56.6 bits (135), Expect(2) = 9e-84
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 1093 LLHSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQK 1209
L +SCD+++D +S NEWCYCFQ+ PCQ E++ IQK
Sbjct: 287 LFNSCDSFKDGKLSNNEWCYCFQKPAGLPCQNEMNRIQK 325
>ref|NP_001159936.1| testican-1 isoform 4 precursor [Mus musculus].
Length = 367
Score = 273 bits (698), Expect(2) = 9e-84
Identities = 134/256 (52%), Positives = 167/256 (65%), Gaps = 6/256 (2%)
Frame = +2
Query: 350 SFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKCG 520
+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 521 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 691
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 153
Query: 692 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 871
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 154 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 213
Query: 872 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1051
+DWF ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 214 KDWFGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 272
Query: 1052 GSIYLDKNEQCTEAFF 1099
+IYLDK E C + F
Sbjct: 273 NAIYLDKYEPCIKPLF 288
Score = 56.6 bits (135), Expect(2) = 9e-84
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 1093 LLHSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQK 1209
L +SCD+++D +S NEWCYCFQ+ PCQ E++ IQK
Sbjct: 287 LFNSCDSFKDGKLSNNEWCYCFQKPAGLPCQNEMNRIQK 325
>ref|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus].
Length = 441
Score = 268 bits (685), Expect(2) = 3e-82
Identities = 132/256 (51%), Positives = 164/256 (64%), Gaps = 6/256 (2%)
Frame = +2
Query: 350 SFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKCG 520
+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 521 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 691
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 153
Query: 692 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 871
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 154 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 213
Query: 872 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1051
+DWF ALHE N+ K + FDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 214 KDWFGALHEDA--NRVIKPTSSDPAQGFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 271
Query: 1052 GSIYLDKNEQCTEAFF 1099
+IYLDK E C + F
Sbjct: 272 NAIYLDKYEPCIKPLF 287
Score = 56.6 bits (135), Expect(2) = 3e-82
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 1093 LLHSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQK 1209
L +SCD+++D +S NEWCYCFQ+ PCQ E++ IQK
Sbjct: 286 LFNSCDSFKDGKLSNNEWCYCFQKPAGLPCQNEMNRIQK 324
>ref|NP_443720.1| testican-2 precursor [Mus musculus].
Length = 423
Score = 252 bits (644), Expect(2) = 9e-75
Identities = 118/255 (46%), Positives = 164/255 (64%), Gaps = 4/255 (1%)
Frame = +2
Query: 347 GSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKC 517
G+F++D+QWLS++SQY + WNRFRD DDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDEQWLSSISQYSGKIKHWNRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 518 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 697
RH+VC+ QG A+CI +++L H +K + G S C+ C ++ VCGSDG
Sbjct: 96 SRHKVCVAQGYQRAMCISRKKLEHRIKQPSL---KLHGGKDSVCKPCHMAQLASVCGSDG 152
Query: 698 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSD-TTRSSSGNVKRVCTSLEFREVSTRLR 874
H YSS CKLE QAC+ KQ++VRCEG CPCP++ +T S++ + CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLAVRCEGPCPCPTEQSTASTTDSKSETCTGQDLADLGDRLR 212
Query: 875 DWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELG 1054
DWF+ L E+ QN A + P + D S+ CKDS+GWMF++LDT+ DL LDQ+EL
Sbjct: 213 DWFQLLRENSKQNGSANSATNP--AGLDKSLGASCKDSIGWMFSKLDTSGDLFLDQTELA 270
Query: 1055 SIYLDKNEQCTEAFF 1099
+I LDK E C FF
Sbjct: 271 AINLDKYEVCIRPFF 285
Score = 47.4 bits (111), Expect(2) = 9e-75
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQ 1206
+SCDTY+D +S EWC+CF R++ PPC EL Q
Sbjct: 286 NSCDTYKDGRVSTAEWCFCFWREK-PPCLAELERTQ 320
>ref|NP_032073.2| follistatin-related protein 1 precursor [Mus musculus].
Length = 306
Score = 54.3 bits (129), Expect = 2e-07
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +2
Query: 605 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 775
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 35 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 94
Query: 776 HCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKA 889
HC + S+S VC E+ RL W +A
Sbjct: 95 HCKEKKSASPSAS---PVVCYQANRDELRRRLIQWLEA 129
>ref|NP_067617.3| agrin [Mus musculus].
Length = 2034
Score = 51.6 bits (122), Expect = 1e-06
Identities = 37/129 (28%), Positives = 47/129 (36%), Gaps = 19/129 (14%)
Frame = +2
Query: 482 DPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCL 661
D PC +C C V+ +G AVC C++
Sbjct: 464 DQTPSPCRGAQCAFGATCTVK-NGKAVC--------------------------ECQRVC 496
Query: 662 GVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV-------RC------------EGHCP 784
PVCGSDG Y S C+LE AC LG++I V RC G C
Sbjct: 497 SGGYDPVCGSDGVTYGSVCELESMACTLGREIRVARRGPCDRCGQCRFGSLCEVETGRCV 556
Query: 785 CPSDTTRSS 811
CPS+ S+
Sbjct: 557 CPSECVESA 565
>ref|NP_034227.3| SPARC-like protein 1 precursor [Mus musculus].
Length = 650
Score = 43.1 bits (100), Expect(2) = 5e-06
Identities = 54/233 (23%), Positives = 76/233 (32%), Gaps = 33/233 (14%)
Frame = +2
Query: 500 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 679
C N +C R +C G C+ Q P TC +
Sbjct: 419 CTNFQCKRGHICKTDPQGKPHCVCQ--------------------DPETCPPAK--ILDQ 456
Query: 680 VCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSL 844
CG+D Y+S C L C L G Q+ + G C CT
Sbjct: 457 ACGTDNQTYASSCHLFATKCRLEGTKKGHQLQLDYFGACKSIP------------ACTDF 504
Query: 845 EFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILPIC 979
E + R+RDW K + G N+K + ++ + R D I +
Sbjct: 505 EVAQFPLRMRDWLKNILMQLYEPNPKHGGYLNEKQRSKVKKIYLDEKRLLAGDHPIELLL 564
Query: 980 KD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFF 1099
+D + W FN LD + D +L SEL + L E C FF
Sbjct: 565 RDFKKNYHMYVYPVHWQFNELDQHPADRILTHSELAPLRASLVPMEHCITRFF 617
Score = 25.8 bits (55), Expect(2) = 5e-06
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 1105 CDTYRDRSISXNEWCYCF 1158
CD +D+ I+ EW +CF
Sbjct: 620 CDPNKDKHITLKEWGHCF 637
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,377,632
Number of extensions: 1264938
Number of successful extensions: 6719
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6650
Number of HSP's successfully gapped: 18
Length of query: 404
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 300
Effective length of database: 12,493,815
Effective search space: 3748144500
Effective search space used: 3748144500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002309
(1213 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa]. 541 e-173
Alignment gi|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa]. 541 e-173
Alignment gi|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa]. 536 e-171
Alignment gi|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa]. 215 3e-64
Alignment gi|XP_003360811.1| PREDICTED: testican-2-like, partial [Sus scr... 216 2e-62
Alignment gi|XP_003354339.1| PREDICTED: testican-1-like [Sus scrofa]. 181 1e-45
Alignment gi|XP_003354335.1| PREDICTED: testican-1-like [Sus scrofa]. 110 5e-35
Alignment gi|XP_003356160.1| PREDICTED: agrin-like [Sus scrofa]. 55 1e-07
Alignment gi|NP_001090891.1| SPARC-like protein 1 [Sus scrofa]. 45 1e-06
Alignment gi|XP_003357144.1| PREDICTED: SPARC-like protein 1-like [Sus sc... 43 4e-06
>ref|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa].
Length = 424
Score = 541 bits (1395), Expect(2) = e-173
Identities = 255/257 (99%), Positives = 255/257 (99%)
Frame = +2
Query: 329 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN 508
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN 83
Query: 509 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCG 688
MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSPVCG
Sbjct: 84 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSPVCG 143
Query: 689 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTR 868
SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSS GNVKRVCTSLEFREVSTR
Sbjct: 144 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTR 203
Query: 869 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 1048
LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE
Sbjct: 204 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 263
Query: 1049 LGSIYLDKNEQCTEAFF 1099
LGSIYLDKNEQCTEAFF
Sbjct: 264 LGSIYLDKNEQCTEAFF 280
Score = 84.3 bits (207), Expect(2) = e-173
Identities = 36/38 (94%), Positives = 37/38 (97%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQKR 1212
+SCDTYRDRSIS NEWCYCFQRQQDPPCQTELSSIQKR
Sbjct: 281 NSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKR 318
>ref|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa].
Length = 424
Score = 541 bits (1395), Expect(2) = e-173
Identities = 255/257 (99%), Positives = 255/257 (99%)
Frame = +2
Query: 329 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN 508
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN 83
Query: 509 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCG 688
MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSPVCG
Sbjct: 84 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSPVCG 143
Query: 689 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTR 868
SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSS GNVKRVCTSLEFREVSTR
Sbjct: 144 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTR 203
Query: 869 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 1048
LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE
Sbjct: 204 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 263
Query: 1049 LGSIYLDKNEQCTEAFF 1099
LGSIYLDKNEQCTEAFF
Sbjct: 264 LGSIYLDKNEQCTEAFF 280
Score = 84.3 bits (207), Expect(2) = e-173
Identities = 36/38 (94%), Positives = 37/38 (97%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQKR 1212
+SCDTYRDRSIS NEWCYCFQRQQDPPCQTELSSIQKR
Sbjct: 281 NSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKR 318
>ref|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa].
Length = 427
Score = 536 bits (1381), Expect(2) = e-171
Identities = 255/260 (98%), Positives = 255/260 (98%), Gaps = 3/260 (1%)
Frame = +2
Query: 329 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDP 499
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD DDYFRTWSPGRAFDQALDPAKDP
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDP 83
Query: 500 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 679
CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSP
Sbjct: 84 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSP 143
Query: 680 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREV 859
VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSS GNVKRVCTSLEFREV
Sbjct: 144 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 203
Query: 860 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 1039
STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD
Sbjct: 204 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 263
Query: 1040 QSELGSIYLDKNEQCTEAFF 1099
QSELGSIYLDKNEQCTEAFF
Sbjct: 264 QSELGSIYLDKNEQCTEAFF 283
Score = 84.3 bits (207), Expect(2) = e-171
Identities = 36/38 (94%), Positives = 37/38 (97%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQKR 1212
+SCDTYRDRSIS NEWCYCFQRQQDPPCQTELSSIQKR
Sbjct: 284 NSCDTYRDRSISNNEWCYCFQRQQDPPCQTELSSIQKR 321
>ref|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa].
Length = 413
Score = 215 bits (547), Expect(2) = 3e-64
Identities = 102/224 (45%), Positives = 138/224 (61%), Gaps = 1/224 (0%)
Frame = +2
Query: 431 DDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGA 610
DDY ++W + D+ALD KDPC +KC RH+VCI QG A+CI +++L H +K
Sbjct: 56 DDYIKSWEDNQQGDEALDTTKDPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPAL 115
Query: 611 GHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCP 790
+ G+ + C+ C ++ VCGSDGH YSS CKLE QAC+ KQ++VRCEG CPCP
Sbjct: 116 ---KLHGNKDTACKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLTVRCEGPCPCP 172
Query: 791 SDTTRSSSGNVK-RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSI 967
++ +S+ + K CT + ++ RLRDWF+ LHE+ QN S D S+
Sbjct: 173 TEQAATSTADGKPETCTGQDLADLGDRLRDWFQLLHENSKQNGSVSSGAN-LASGLDKSL 231
Query: 968 LPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFF 1099
CKDS+GWMF++LDT+ DL LDQ EL +I LDK E C FF
Sbjct: 232 GASCKDSIGWMFSKLDTSADLFLDQMELAAINLDKYEVCIRPFF 275
Score = 49.3 bits (116), Expect(2) = 3e-64
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQ 1206
+SCDTY+D +S EWC+CF R++ PPC EL IQ
Sbjct: 276 NSCDTYKDGRVSTAEWCFCFWREK-PPCLAELERIQ 310
>ref|XP_003360811.1| PREDICTED: testican-2-like, partial [Sus scrofa].
Length = 351
Score = 216 bits (549), Expect(2) = 2e-62
Identities = 102/225 (45%), Positives = 139/225 (61%), Gaps = 1/225 (0%)
Frame = +2
Query: 428 DDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAG 607
+DDY ++W + D+ALD KDPC +KC RH+VCI QG A+CI +++L H +K
Sbjct: 3 EDDYIKSWEDNQQGDEALDTTKDPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPA 62
Query: 608 AGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPC 787
+ G+ + C+ C ++ VCGSDGH YSS CKLE QAC+ KQ++VRCEG CPC
Sbjct: 63 L---KLHGNKDTACKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLTVRCEGPCPC 119
Query: 788 PSDTTRSSSGNVK-RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTS 964
P++ +S+ + K CT + ++ RLRDWF+ LHE+ QN S D S
Sbjct: 120 PTEQAATSTADGKPETCTGQDLADLGDRLRDWFQLLHENSKQNGSVSSGAN-LASGLDKS 178
Query: 965 ILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFF 1099
+ CKDS+GWMF++LDT+ DL LDQ EL +I LDK E C FF
Sbjct: 179 LGASCKDSIGWMFSKLDTSADLFLDQMELAAINLDKYEVCIRPFF 223
Score = 42.4 bits (98), Expect(2) = 2e-62
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +1
Query: 1099 HSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQ 1206
+SCDTY EWC+CF R++ PPC EL IQ
Sbjct: 224 NSCDTYXXXXXXXAEWCFCFWREK-PPCLAELERIQ 258
>ref|XP_003354339.1| PREDICTED: testican-1-like [Sus scrofa].
Length = 271
Score = 181 bits (458), Expect = 1e-45
Identities = 80/151 (52%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Frame = +2
Query: 338 PAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKC 517
P G+FLD+ QWLSTVSQYDR+ WNRFRDDDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 33 PNNGNFLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKC 91
Query: 518 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG-SPPSTCRQCLGVSMSPVCGSD 694
H+VC+ Q TA+C+ ++ L K HK G S C+ C + + VCGSD
Sbjct: 92 SPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSD 151
Query: 695 GHAYSSQCKLEYQACVLGKQISVRCEGHCPC 787
GH Y+S+CKLE+ AC GK ++ C+G CPC
Sbjct: 152 GHTYTSKCKLEFHACSTGKSLTTLCDGPCPC 182
>ref|XP_003354335.1| PREDICTED: testican-1-like [Sus scrofa].
Length = 258
Score = 110 bits (275), Expect(2) = 5e-35
Identities = 53/89 (59%), Positives = 64/89 (71%)
Frame = +2
Query: 833 CTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRL 1012
CT E R +++RL+DWF ALHE ++ K S + RFDTSILPICKDSLGWMFN+L
Sbjct: 17 CTDKELRNLASRLKDWFGALHEDANRVIKPTSS-DAAQGRFDTSILPICKDSLGWMFNKL 75
Query: 1013 DTNYDLLLDQSELGSIYLDKNEQCTEAFF 1099
D NYDLLLD SE+ +IYLDK E C + F
Sbjct: 76 DMNYDLLLDHSEINAIYLDKYEPCIKPLF 104
Score = 56.2 bits (134), Expect(2) = 5e-35
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 1093 LLHSCDTYRDRSISXNEWCYCFQRQQDPPCQTELSSIQK 1209
L +SCD+++D +S NEWCYCFQ+ PCQ E++ IQK
Sbjct: 103 LFNSCDSFKDGKLSNNEWCYCFQKPGGLPCQNEMNRIQK 141
>ref|XP_003356160.1| PREDICTED: agrin-like [Sus scrofa].
Length = 1015
Score = 54.7 bits (130), Expect = 1e-07
Identities = 41/130 (31%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Frame = +2
Query: 455 PGRAFDQALDPA--KDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQR 625
P RA Q L A +DPC N+ C C G TA C+
Sbjct: 38 PLRASHQQLCQAGMRDPCSNITCSFGSTCARSSDGLTATCLC------------------ 79
Query: 626 RGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTR 805
P+TC LG SPVCGSDG Y S+C+L AC + + + +G C D +
Sbjct: 80 ----PATC---LGAPESPVCGSDGTDYPSECQLLRHACARQENVFKKFDGPC----DPCQ 128
Query: 806 SSSGNVKRVC 835
+ ++ RVC
Sbjct: 129 GALNDLSRVC 138
Score = 52.8 bits (125), Expect = 4e-07
Identities = 38/129 (29%), Positives = 49/129 (37%), Gaps = 19/129 (14%)
Frame = +2
Query: 482 DPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCL 661
D PCL ++C C V+ +G A C+ C+Q
Sbjct: 269 DQPPSPCLGVQCPFGATCAVK-NGEAECV--------------------------CQQTC 301
Query: 662 GVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV-------RC------------EGHCP 784
PVCGSDG Y S C+LE AC LG++I V RC G C
Sbjct: 302 SGLYDPVCGSDGVTYGSACELEATACALGQEIRVARRGPCDRCGQCRFGALCEAETGRCV 361
Query: 785 CPSDTTRSS 811
CPS+ S+
Sbjct: 362 CPSECVASA 370
>ref|NP_001090891.1| SPARC-like protein 1 [Sus scrofa].
Length = 662
Score = 44.7 bits (104), Expect(2) = 1e-06
Identities = 55/235 (23%), Positives = 81/235 (34%), Gaps = 33/235 (14%)
Frame = +2
Query: 494 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 673
D C++ +C R +C G C+ Q P TC +
Sbjct: 429 DSCMSFQCKRGHICKADQQGKPHCVCQ--------------------DPVTCPPTK--LL 466
Query: 674 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 838
VCG+D Y+S C L C L G Q+ + G C CT
Sbjct: 467 DQVCGTDNQTYASSCHLFATKCRLEGTKKGHQLQLDYFGACKSIP------------ACT 514
Query: 839 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 973
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 515 DFEVTQFPLRMRDWLKNILMQLYEPNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 574
Query: 974 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFF 1099
+ +D + W F+ LD + D +L SEL + L E C FF
Sbjct: 575 LLRDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHSELAPLRASLVPMEHCITRFF 629
Score = 25.8 bits (55), Expect(2) = 1e-06
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 1105 CDTYRDRSISXNEWCYCFQRQQD 1173
CD +D+ I+ EW CF+ +++
Sbjct: 632 CDPNKDKHITLKEWGRCFEIKEE 654
>ref|XP_003357144.1| PREDICTED: SPARC-like protein 1-like [Sus scrofa].
Length = 705
Score = 43.1 bits (100), Expect(2) = 4e-06
Identities = 54/233 (23%), Positives = 82/233 (35%), Gaps = 31/233 (13%)
Frame = +2
Query: 494 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 673
D C++ +C R +C G C+ Q P TC +
Sbjct: 472 DSCMSFQCKRGHICKADQQGKPHCVCQ--------------------DPVTCPPTK--LL 509
Query: 674 SPVCGSDGHAYSSQCKLEYQACVL---GKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSL 844
VCG+D Y+S C L C L K+ ++ + C S CT
Sbjct: 510 DQVCGTDNQTYASSCHLFATKCRLEGTKKEHQLQLDYFGACKSIP----------ACTDF 559
Query: 845 EFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILPIC 979
E + R+RDW K + +G N+K + ++ + R D SI +
Sbjct: 560 EVTQFPLRMRDWLKNILMQLYEPNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDLLL 619
Query: 980 KD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFF 1099
+D + W F+ LD + D +L SEL + L E C FF
Sbjct: 620 RDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHSELAPLRASLVPMEHCITRFF 672
Score = 25.8 bits (55), Expect(2) = 4e-06
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 1105 CDTYRDRSISXNEWCYCFQRQQD 1173
CD +D+ I+ EW CF+ +++
Sbjct: 675 CDPNKDKHITLKEWGRCFEIKEE 697
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,773,203
Number of extensions: 996982
Number of successful extensions: 6257
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 6201
Number of HSP's successfully gapped: 21
Length of query: 404
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 303
Effective length of database: 8,829,335
Effective search space: 2675288505
Effective search space used: 2675288505
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002309
(1213 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 418 e-114
>Sscrofa_Chr14
|| Length = 153851969
Score = 418 bits (211), Expect = e-114
Identities = 220/222 (99%), Gaps = 1/222 (0%)
Strand = Plus / Plus
Query: 951 gatttgataccagtattttgccaatctgcaaggattcacttggctggatgtttaacagac 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23492515 gatttgataccagtattttgccaatctgcaaggattcacttggctggatgtttaacagac 23492574
Query: 1011 tggacacaaactacgacctgctcctggaccagtcggagctggggagcatttacctggaca 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23492575 tggacacaaactacgacctgctcctggaccagtcggagctggggagcatttacctggaca 23492634
Query: 1071 agaatgagcagtgcacggaggccttcttc-actcctgtgacacatacagggaccgctcca 1129
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 23492635 agaatgagcagtgcacggaggccttcttcaactcctgtgacacatacagggaccgctcca 23492694
Query: 1130 tctccnacaacgagtggtgctactgcttccagaggcagcaag 1171
||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 23492695 tctccaacaacgagtggtgctactgcttccagaggcagcaag 23492736
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 258 agatgctccgggcgccggccgtgctgtgcgtgtgcgcggccgcctggtgcgcgcaggctc 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086207 agatgctccgggcgccggccgtgctgtgcgtgtgcgcggccgcctggtgcgcgcaggctc 23086266
Query: 318 tggcggtggccacgggccggccggccggcggcagttttctggacgacaaacaatggctca 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086267 tggcggtggccacgggccggccggccggcggcagttttctggacgacaaacaatggctca 23086326
Query: 378 gcacggtgtcccagtacgaccgggaggccgggcagtggaaccgattccgagacg 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086327 gcacggtgtcccagtacgaccgggaggccgggcagtggaaccgattccgagacg 23086380
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 1 ctcagatcccgtccctcctccgccgggagcagctcggagtcgcagggcagcggcgggcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085621 ctcagatcccgtccctcctccgccgggagcagctcggagtcgcagggcagcggcgggcag 23085680
Query: 61 agagagcgccccggtgccgcgtgcgccccggtgcagaagcgccccgagcctccggccctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085681 agagagcgccccggtgccgcgtgcgccccggtgcagaagcgccccgagcctccggccctc 23085740
Query: 121 ggaagcga 128
||||||||
Sbjct: 23085741 ggaagcga 23085748
Score = 244 bits (123), Expect = 9e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 829 agtgtgcaccagcctggagttcagggaggtgtcgaccaggctgcgggactggttcaaggc 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23476186 agtgtgcaccagcctggagttcagggaggtgtcgaccaggctgcgggactggttcaaggc 23476245
Query: 889 ccttcacgagagcgggagccagaacaagaaggccaaaggctccctgcggccggagagaag 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23476246 ccttcacgagagcgggagccagaacaagaaggccaaaggctccctgcggccggagagaag 23476305
Query: 949 cag 951
|||
Sbjct: 23476306 cag 23476308
Score = 238 bits (120), Expect = 6e-60
Identities = 126/128 (98%)
Strand = Plus / Plus
Query: 588 acagtgtgaaagatgcaggagccgggcataagcagcggaggggttccccaccatccacct 647
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 23322392 acagtgtgaaagatgcaggagccgggcataagcagcggaggggtcccccgccatccacct 23322451
Query: 648 gcaggcagtgcttgggggtctccatgagccctgtctgtggctcagatggacatgcctact 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23322452 gcaggcagtgcttgggggtctccatgagccctgtctgtggctcagatggacatgcctact 23322511
Query: 708 cttcccag 715
||||||||
Sbjct: 23322512 cttcccag 23322519
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 476 gctttagatccagctaaagacccgtgcttgaatatgaaatgtggccgccacgaagtgtgc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23259854 gctttagatccagctaaagacccgtgcttgaatatgaaatgtggccgccacgaagtgtgc 23259913
Query: 536 attgtgcaaggttctgggaccgcggtctgcattggccagcggagacttgcccacag 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23259914 attgtgcaaggttctgggaccgcggtctgcattggccagcggagacttgcccacag 23259969
Score = 226 bits (114), Expect = 2e-56
Identities = 117/118 (99%)
Strand = Plus / Plus
Query: 713 cagtgcaaactagaataccaggcgtgtgtcttaggaaagcagatctcagtgagatgtgaa 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23328355 cagtgcaaactagaataccaggcgtgtgtcttaggaaagcagatctcagtgagatgtgaa 23328414
Query: 773 gggcattgcccatgtccttcagatacgaccaggagctcaagcggaaatgtgaaaagag 830
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 23328415 gggcattgcccatgtccttcagatacgaccaggagctcaagaggaaatgtgaaaagag 23328472
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 200 agtcctccgctccagccaagtcgcatccggagctcctgcagctcggatccggggaggaag 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085820 agtcctccgctccagccaagtcgcatccggagctcctgcagctcggatccggggaggaag 23085879
Score = 91.7 bits (46), Expect = 8e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 431 gatgattatttccgcacttggagtccaggaagagccttcgatcagg 476
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23216098 gatgattatttccgcacttggagtccaggaagagccttcgatcagg 23216143
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 1170 agatccgccttgccagacagagctcagcagtattcagaagcggc 1213
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23497686 agatccgccttgccagacagagctcagcagtattcagaagcggc 23497729
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,075,086
Number of extensions: 133
Number of successful extensions: 133
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 10
Length of query: 1213
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1192
Effective length of database: 2,808,413,156
Effective search space: 3347628481952
Effective search space used: 3347628481952
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)