Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002311
(1165 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068968.1| testican-1 [Bos taurus]. 286 1e-77
Alignment gi|NP_001094585.1| testican-2 [Bos taurus]. 276 3e-74
Alignment gi|NP_001029474.1| SPARC-like protein 1 [Bos taurus]. 56 7e-08
Alignment gi|NP_001017950.1| follistatin-related protein 1 precursor [Bos... 53 5e-07
Alignment gi|XP_001254149.2| PREDICTED: follistatin-like 1, partial [Bos ... 53 5e-07
Alignment gi|XP_002694239.1| PREDICTED: neurexin 2-like [Bos taurus]. 53 6e-07
Alignment gi|XP_604151.4| PREDICTED: neurexin 2-like [Bos taurus]. 53 6e-07
Alignment gi|XP_002689233.1| PREDICTED: follistatin-like 4 [Bos taurus]. 51 2e-06
Alignment gi|NP_001192405.1| tomoregulin-1 [Bos taurus]. 49 7e-06
Alignment gi|XP_002689913.1| PREDICTED: tomoregulin-1-like [Bos taurus]. 49 7e-06
>ref|NP_001068968.1| testican-1 [Bos taurus].
Length = 442
Score = 286 bits (733), Expect(2) = 1e-77
Identities = 138/272 (50%), Positives = 177/272 (65%), Gaps = 6/272 (2%)
Frame = +1
Query: 346 PAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLN 516
P G+FLD+ QWLSTVS+Y+R+ WNRFRD DDYFR W+P + FDQALDPAKDPCL
Sbjct: 33 PNNGNFLDNDQWLSTVSEYERDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPAKDPCLK 91
Query: 517 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSP 687
+KC H+VC+ Q TA+C+ ++ L K HK G PS C+ C +
Sbjct: 92 VKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGTVVHKHWVG--PSNLVKCKPCPAAQSAM 149
Query: 688 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREV 867
VCGSDGH Y+S+CKLE+ AC G+ ++ C+G CPC + K CT E R +
Sbjct: 150 VCGSDGHTYTSKCKLEFHACSTGRSLTTLCDGPCPCLPEPEPPKHKAEKNACTDKELRNL 209
Query: 868 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 1047
++RL+DWF ALHE ++ S + RFDTSILPICKDSLGWMFN+LD NYDLLLD
Sbjct: 210 ASRLKDWFGALHEDANRVINPTSS-ETAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLD 268
Query: 1048 QSELGSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
SE+ +IYLDK E C + FNSCD+++D +S
Sbjct: 269 HSEINAIYLDKYEPCIKPLFNSCDSFKDGKLS 300
Score = 22.7 bits (47), Expect(2) = 1e-77
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 302 NEWCYC 307
>ref|NP_001094585.1| testican-2 [Bos taurus].
Length = 424
Score = 276 bits (705), Expect = 3e-74
Identities = 129/268 (48%), Positives = 175/268 (65%), Gaps = 4/268 (1%)
Frame = +1
Query: 355 GSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKC 525
G+F++D+QWLS++SQY + WNRFRD DDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDEQWLSSISQYSGKIKHWNRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 526 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 705
RH+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDG
Sbjct: 96 SRHKVCIAQGYQRAMCISRKKLEHRIKQPAV---KLHGNKDTICKPCHMAHLASVCGSDG 152
Query: 706 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK-RVCTSLEFREVSTRLR 882
H YSS CKLE QAC+ KQ++VRCEG CPCP++ +S+ + K CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLTVRCEGPCPCPTEQAATSTSDSKPETCTGQDLADLGDRLR 212
Query: 883 DWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELG 1062
DWF+ LHE+ QN A P S D S+ CKDS+GWMF++LDT+ DL LDQ+EL
Sbjct: 213 DWFQLLHENSKQNGSANSGASPA-SGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELA 271
Query: 1063 SIYLDKNEQCTEAFFNSCDTYRDRSIST 1146
+I LDK E C FFNSCDTY+D +ST
Sbjct: 272 AINLDKYEVCIRPFFNSCDTYKDGRVST 299
>ref|NP_001029474.1| SPARC-like protein 1 [Bos taurus].
Length = 654
Score = 55.8 bits (133), Expect = 7e-08
Identities = 59/247 (23%), Positives = 89/247 (36%), Gaps = 33/247 (13%)
Frame = +1
Query: 502 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 681
D CL+ +C R +C G C+ Q P++C +
Sbjct: 421 DSCLSFQCKRGHICKADQHGKPYCVCQ--------------------DPASCPPT--KLL 458
Query: 682 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 846
VCG+D Y+S C L C + G Q+ + G C CT
Sbjct: 459 DQVCGTDNQTYASSCHLFATKCRMERTKKGHQLHLDYFGAC------------KTIPACT 506
Query: 847 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 981
E + R+RDW K + SG N+K + ++ + R D SI
Sbjct: 507 DFEVTQFPLRMRDWLKNILVQLYEPNPEHSGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 566
Query: 982 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFFNSCDT 1122
+ +D + W F+ LD + D +L SEL + L E C FF CD
Sbjct: 567 LLRDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHSELAPLRASLVPMEHCITRFFEECDP 626
Query: 1123 YRDRSIS 1143
+D+ I+
Sbjct: 627 NKDKHIT 633
>ref|NP_001017950.1| follistatin-related protein 1 precursor [Bos taurus].
Length = 307
Score = 53.1 bits (126), Expect = 5e-07
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +1
Query: 613 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 783
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 36 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 95
Query: 784 HCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKA 897
HC + S+S VC E+ R+ W +A
Sbjct: 96 HCKEKKSVSPSAS---PVVCYQSNRDELRRRIIQWLEA 130
>ref|XP_001254149.2| PREDICTED: follistatin-like 1, partial [Bos taurus].
Length = 317
Score = 53.1 bits (126), Expect = 5e-07
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +1
Query: 613 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 783
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 16 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 75
Query: 784 HCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKA 897
HC + S+S VC E+ R+ W +A
Sbjct: 76 HCKEKKSVSPSAS---PVVCYQSNRDELRRRIIQWLEA 110
>ref|XP_002694239.1| PREDICTED: neurexin 2-like [Bos taurus].
Length = 2043
Score = 52.8 bits (125), Expect = 6e-07
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = +1
Query: 499 KDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGV 675
+DPC N+ C C+ G TA C+ P+TC LG
Sbjct: 247 RDPCSNVTCSFGSTCVPSADGLTATCLC----------------------PATC---LGA 281
Query: 676 SMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHC-PCP---SDTTRSSSGN 828
PVCGSDG Y S+C+L AC + I + +G C PC SD +R+ N
Sbjct: 282 PEGPVCGSDGSDYPSECQLLRHACAHQENIFKKFDGPCDPCQGFLSDLSRTCRVN 336
Score = 49.7 bits (117), Expect = 5e-06
Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Frame = +1
Query: 613 GAGHKQRRGSPPSTC-RQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV------ 771
GA + G C + C GV PVCGSDG Y S C+LE AC LG++I V
Sbjct: 478 GAMCAVKNGEAECACPKACSGV-YDPVCGSDGITYGSACELEATACALGREIRVARRGPC 536
Query: 772 -RC------------EGHCPCPSDTTRSS 819
RC G C CPS+ S+
Sbjct: 537 DRCGQCRFGALCEAETGRCVCPSECVASA 565
>ref|XP_604151.4| PREDICTED: neurexin 2-like [Bos taurus].
Length = 2043
Score = 52.8 bits (125), Expect = 6e-07
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = +1
Query: 499 KDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGV 675
+DPC N+ C C+ G TA C+ P+TC LG
Sbjct: 247 RDPCSNVTCSFGSTCVPSADGLTATCLC----------------------PATC---LGA 281
Query: 676 SMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHC-PCP---SDTTRSSSGN 828
PVCGSDG Y S+C+L AC + I + +G C PC SD +R+ N
Sbjct: 282 PEGPVCGSDGSDYPSECQLLRHACAHQENIFKKFDGPCDPCQGFLSDLSRTCRVN 336
Score = 49.7 bits (117), Expect = 5e-06
Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Frame = +1
Query: 613 GAGHKQRRGSPPSTC-RQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV------ 771
GA + G C + C GV PVCGSDG Y S C+LE AC LG++I V
Sbjct: 478 GAMCAVKNGEAECACPKACSGV-YDPVCGSDGITYGSACELEATACALGREIRVARRGPC 536
Query: 772 -RC------------EGHCPCPSDTTRSS 819
RC G C CPS+ S+
Sbjct: 537 DRCGQCRFGALCEAETGRCVCPSECVASA 565
>ref|XP_002689233.1| PREDICTED: follistatin-like 4 [Bos taurus].
Length = 843
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +1
Query: 637 GSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSD-TTR 813
G P C + S PVCGSDG Y + C+L AC+LGK+I + C D T
Sbjct: 83 GEPECRCLEACRPSYVPVCGSDGRVYENHCELHRAACLLGKKIVMVRNKDCFLKGDPCTV 142
Query: 814 SSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKA 930
+ +K+V +L+ R + LHE S+ A
Sbjct: 143 ADYARLKKVLLALQSR---------LQPLHEGDSRQDPA 172
>ref|NP_001192405.1| tomoregulin-1 [Bos taurus].
Length = 378
Score = 49.3 bits (116), Expect = 7e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 664 CLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTT 810
C G S +PVC SDG +Y++ C + +C+ +QI +R GHC DT+
Sbjct: 192 CSGYSFNPVCASDGSSYNNPCFVREASCIKQEQIDIRHLGHCTDTDDTS 240
>ref|XP_002689913.1| PREDICTED: tomoregulin-1-like [Bos taurus].
Length = 378
Score = 49.3 bits (116), Expect = 7e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 664 CLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTT 810
C G S +PVC SDG +Y++ C + +C+ +QI +R GHC DT+
Sbjct: 192 CSGYSFNPVCASDGSSYNNPCFVREASCIKQEQIDIRHLGHCTDTDDTS 240
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,017,585
Number of extensions: 1472706
Number of successful extensions: 6861
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6820
Number of HSP's successfully gapped: 14
Length of query: 388
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,240,222
Effective search space: 4044223048
Effective search space used: 4044223048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002311
(1165 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPA... 306 2e-83
Alignment gi|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPA... 269 3e-72
Alignment gi|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPA... 264 1e-70
Alignment gi|XP_531914.2| PREDICTED: similar to Testican-1 precursor (SPO... 229 3e-60
Alignment gi|XP_860591.1| PREDICTED: similar to SPARC-like protein 1 prec... 58 2e-08
Alignment gi|XP_535648.2| PREDICTED: similar to SPARC-like protein 1 prec... 58 2e-08
Alignment gi|XP_850045.1| PREDICTED: similar to SPARC-like protein 1 prec... 58 2e-08
Alignment gi|XP_860498.1| PREDICTED: similar to SPARC-like protein 1 prec... 58 2e-08
Alignment gi|XP_850499.1| PREDICTED: similar to Follistatin-related prote... 53 5e-07
Alignment gi|XP_536713.2| PREDICTED: similar to agrin isoform 1 [Canis fa... 53 5e-07
>ref|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 3) [Canis
familiaris].
Length = 443
Score = 306 bits (783), Expect(2) = 2e-83
Identities = 144/181 (79%), Positives = 152/181 (83%)
Frame = +1
Query: 601 VKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCE 780
+KDAG GHKQ RG STC+QC +PVCGSDGH YSSQCKLEYQACVLGKQ+SV CE
Sbjct: 128 MKDAGVGHKQWRGPVSSTCKQCPVAYTNPVCGSDGHTYSSQCKLEYQACVLGKQLSVNCE 187
Query: 781 GHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSR 960
G CPCP D S VKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPERSR
Sbjct: 188 GRCPCPPDKPTGPSRRVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKALLRPERSR 247
Query: 961 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSI 1140
FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCT+AFFNSCDTY+D I
Sbjct: 248 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTKAFFNSCDTYKDSLI 307
Query: 1141 S 1143
S
Sbjct: 308 S 308
Score = 22.7 bits (47), Expect(2) = 2e-83
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 310 NEWCYC 315
>ref|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 2) isoform 1 [Canis
familiaris].
Length = 421
Score = 269 bits (688), Expect = 3e-72
Identities = 129/265 (48%), Positives = 173/265 (65%), Gaps = 1/265 (0%)
Frame = +1
Query: 355 GSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRH 534
G+F++DKQWLS++SQY + RFRDDDY ++W + D+ALD KDPC +KC RH
Sbjct: 36 GNFMEDKQWLSSISQYSGKIKHGTRFRDDDYIKSWEDNQQGDEALDTTKDPCQKVKCSRH 95
Query: 535 EVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAY 714
+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDGH Y
Sbjct: 96 KVCIAQGYQRAMCISRKKLEHRIKQPTL---KLPGNKDTICKPCHMAPLASVCGSDGHTY 152
Query: 715 SSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK-RVCTSLEFREVSTRLRDWF 891
SS CKLE QAC+ KQ++VRCEG CPCP++ S+ + K CT + ++ RLRDWF
Sbjct: 153 SSVCKLEQQACLSSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQDLADLGDRLRDWF 212
Query: 892 KALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIY 1071
+ LHE+ QN A GS S D S+ CKDS+GWMF++LDT+ DL LDQ+EL +I
Sbjct: 213 QLLHENAKQNGSA-GSGANLASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELAAIN 271
Query: 1072 LDKNEQCTEAFFNSCDTYRDRSIST 1146
LDK E C FFNSCDTY+D +ST
Sbjct: 272 LDKYEVCIRPFFNSCDTYKDGRVST 296
>ref|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 2) isoform 2 [Canis
familiaris].
Length = 424
Score = 264 bits (674), Expect = 1e-70
Identities = 129/268 (48%), Positives = 173/268 (64%), Gaps = 4/268 (1%)
Frame = +1
Query: 355 GSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKC 525
G+F++DKQWLS++SQY + RFRD DDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDKQWLSSISQYSGKIKHGTRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 526 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 705
RH+VCI QG A+CI +++L H +K + G+ + C+ C ++ VCGSDG
Sbjct: 96 SRHKVCIAQGYQRAMCISRKKLEHRIKQPTL---KLPGNKDTICKPCHMAPLASVCGSDG 152
Query: 706 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK-RVCTSLEFREVSTRLR 882
H YSS CKLE QAC+ KQ++VRCEG CPCP++ S+ + K CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQDLADLGDRLR 212
Query: 883 DWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELG 1062
DWF+ LHE+ QN A GS S D S+ CKDS+GWMF++LDT+ DL LDQ+EL
Sbjct: 213 DWFQLLHENAKQNGSA-GSGANLASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELA 271
Query: 1063 SIYLDKNEQCTEAFFNSCDTYRDRSIST 1146
+I LDK E C FFNSCDTY+D +ST
Sbjct: 272 AINLDKYEVCIRPFFNSCDTYKDGRVST 299
>ref|XP_531914.2| PREDICTED: similar to Testican-1 precursor (SPOCK protein) [Canis
familiaris].
Length = 418
Score = 229 bits (583), Expect(2) = 3e-60
Identities = 109/223 (48%), Positives = 143/223 (64%), Gaps = 3/223 (1%)
Frame = +1
Query: 484 ALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST--- 654
ALDP+KDPCL +KC H+VC+ Q TA+C+ ++ L K +K G PS
Sbjct: 57 ALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAYKHWVG--PSNLVK 114
Query: 655 CRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVK 834
C+ C + VCGSDGH Y+S+CKLE+ AC GK +++ C+G CPC + S K
Sbjct: 115 CKPCPAAQSAMVCGSDGHTYTSKCKLEFHACSTGKSLNILCDGPCPCLPEPEPSKHKTEK 174
Query: 835 RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFN 1014
CT E R +++RL+DWF ALHE ++ K S + RFDTSILPICKDSLGWMFN
Sbjct: 175 NACTDKELRNLASRLKDWFGALHEDANRVIKPTSS-DGAQGRFDTSILPICKDSLGWMFN 233
Query: 1015 RLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
+LD NYDLLLD SE+ +IYLDK E C + FNSCD+++D +S
Sbjct: 234 KLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFKDGKLS 276
Score = 22.7 bits (47), Expect(2) = 3e-60
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 278 NEWCYC 283
>ref|XP_860591.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 4
[Canis familiaris].
Length = 656
Score = 58.2 bits (139), Expect = 2e-08
Identities = 59/247 (23%), Positives = 89/247 (36%), Gaps = 33/247 (13%)
Frame = +1
Query: 502 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 681
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 423 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 460
Query: 682 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 846
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 461 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 508
Query: 847 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 981
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 509 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 568
Query: 982 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFFNSCDT 1122
+ +D + W F LD + D +L SEL + L E C FF CD
Sbjct: 569 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFFEECDP 628
Query: 1123 YRDRSIS 1143
+D+ I+
Sbjct: 629 NKDKHIT 635
>ref|XP_535648.2| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 1
[Canis familiaris].
Length = 667
Score = 58.2 bits (139), Expect = 2e-08
Identities = 59/247 (23%), Positives = 89/247 (36%), Gaps = 33/247 (13%)
Frame = +1
Query: 502 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 681
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 434 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 471
Query: 682 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 846
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 472 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 519
Query: 847 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 981
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 520 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 579
Query: 982 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFFNSCDT 1122
+ +D + W F LD + D +L SEL + L E C FF CD
Sbjct: 580 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFFEECDP 639
Query: 1123 YRDRSIS 1143
+D+ I+
Sbjct: 640 NKDKHIT 646
>ref|XP_850045.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 2
[Canis familiaris].
Length = 667
Score = 58.2 bits (139), Expect = 2e-08
Identities = 59/247 (23%), Positives = 89/247 (36%), Gaps = 33/247 (13%)
Frame = +1
Query: 502 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 681
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 434 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 471
Query: 682 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 846
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 472 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 519
Query: 847 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 981
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 520 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 579
Query: 982 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFFNSCDT 1122
+ +D + W F LD + D +L SEL + L E C FF CD
Sbjct: 580 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFFEECDP 639
Query: 1123 YRDRSIS 1143
+D+ I+
Sbjct: 640 NKDKHIT 646
>ref|XP_860498.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 3
[Canis familiaris].
Length = 609
Score = 58.2 bits (139), Expect = 2e-08
Identities = 59/247 (23%), Positives = 89/247 (36%), Gaps = 33/247 (13%)
Frame = +1
Query: 502 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 681
D C+N +C R +C G C+ Q + PP+ +
Sbjct: 376 DSCMNFQCKRGHICKADQQGKPHCVCQDSVT---------------CPPTKL-------L 413
Query: 682 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 846
VCG+D Y+S C L C L G Q+ + G C +CT
Sbjct: 414 DQVCGTDNQTYASSCHLFATKCKLEGTKKGHQLQLDYFGACKSIP------------ICT 461
Query: 847 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 981
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 462 DFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 521
Query: 982 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFFNSCDT 1122
+ +D + W F LD + D +L SEL + L E C FF CD
Sbjct: 522 LLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHSELAPLRASLVPMEHCITRFFEECDP 581
Query: 1123 YRDRSIS 1143
+D+ I+
Sbjct: 582 NKDKHIT 588
>ref|XP_850499.1| PREDICTED: similar to Follistatin-related protein 1 precursor
(Follistatin-like 1) [Canis familiaris].
Length = 403
Score = 53.1 bits (126), Expect = 5e-07
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +1
Query: 613 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 783
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 132 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 191
Query: 784 HCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKA 897
HC + S+S VC E+ R+ W +A
Sbjct: 192 HCKEKKSVSPSAS---PVVCYQSNRDELRRRIIQWLEA 226
>ref|XP_536713.2| PREDICTED: similar to agrin isoform 1 [Canis familiaris].
Length = 1943
Score = 53.1 bits (126), Expect = 5e-07
Identities = 38/129 (29%), Positives = 49/129 (37%), Gaps = 19/129 (14%)
Frame = +1
Query: 490 DPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCL 669
D PCL ++C C V+ +G A C+ C+Q
Sbjct: 357 DQPLSPCLGVRCPFGATCAVK-NGEAECV--------------------------CQQVC 389
Query: 670 GVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV-------RC------------EGHCP 792
PVCGSDG Y S C+LE AC LG++I V RC G C
Sbjct: 390 SGIYDPVCGSDGVTYGSTCELEATACALGREIRVARRGPCDRCGQCRFGALCEAETGRCV 449
Query: 793 CPSDTTRSS 819
CPS+ S+
Sbjct: 450 CPSECVASA 458
Score = 52.4 bits (124), Expect = 8e-07
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Frame = +1
Query: 496 AKDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLG 672
++DPC N+ C C+ G TA C+ P+TCR G
Sbjct: 139 SRDPCSNVTCSFGSTCVRSADGQTATCLC----------------------PATCR---G 173
Query: 673 VSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVC 843
PVCGSDG Y S+C+L AC + I + +G C D + + ++ RVC
Sbjct: 174 PPEGPVCGSDGADYPSECQLLRLACTRQENIVKKFDGPC----DPCQGTHHDLSRVC 226
Score = 49.7 bits (117), Expect = 5e-06
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 6/136 (4%)
Frame = +1
Query: 445 YFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVC--IVQGSGTAVCIGQRRLAHSVKDAGA 618
+ + PG F A D C M CG VC GSG A C+ ++ +V
Sbjct: 46 FLNNYKPGTHFTPAPPTPPDACRGMLCGFGAVCEPSAGGSGRASCVCKKSACPAV----- 100
Query: 619 GHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHC--- 789
++PVCGSD YS++C+L+ C ++I + G C
Sbjct: 101 --------------------VAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSR 140
Query: 790 -PCPSDTTRSSSGNVK 834
PC + T S V+
Sbjct: 141 DPCSNVTCSFGSTCVR 156
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,835,096
Number of extensions: 1492513
Number of successful extensions: 6796
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6749
Number of HSP's successfully gapped: 22
Length of query: 388
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 283
Effective length of database: 15,374,224
Effective search space: 4350905392
Effective search space used: 4350905392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002311
(1165 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035249.1| testican-3 isoform 1 [Homo sapiens]. 458 e-129
Alignment gi|NP_001191287.1| testican-3 isoform 9 [Homo sapiens]. 458 e-129
Alignment gi|NP_058646.2| testican-3 isoform 2 [Homo sapiens]. 452 e-127
Alignment gi|NP_001191288.1| testican-3 isoform 10 [Homo sapiens]. 452 e-127
Alignment gi|NP_001191281.1| testican-3 isoform 3 [Homo sapiens]. 399 e-111
Alignment gi|NP_001191285.1| testican-3 isoform 7 [Homo sapiens]. 370 e-103
Alignment gi|NP_001191283.1| testican-3 isoform 5 [Homo sapiens]. 346 2e-95
Alignment gi|NP_001191284.1| testican-3 isoform 6 [Homo sapiens]. 307 8e-84
Alignment gi|NP_001191282.1| testican-3 isoform 4 [Homo sapiens]. 306 1e-83
Alignment gi|NP_004589.1| testican-1 precursor [Homo sapiens]. 292 3e-79
>ref|NP_001035249.1| testican-3 isoform 1 [Homo sapiens].
Length = 433
Score = 458 bits (1178), Expect = e-129
Identities = 213/268 (79%), Positives = 230/268 (85%)
Frame = +1
Query: 340 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNM 519
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRDDDYFRTWSPG+ FDQALDPAKDPCL M
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDDDYFRTWSPGKPFDQALDPAKDPCLKM 90
Query: 520 KCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGS 699
KC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPVCGS
Sbjct: 91 KCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGS 150
Query: 700 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 879
DGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+ RL
Sbjct: 151 DGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRL 210
Query: 880 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1059
RDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL
Sbjct: 211 RDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 270
Query: 1060 GSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
SIYLDKNEQCT+AFFNSCDTY+D IS
Sbjct: 271 RSIYLDKNEQCTKAFFNSCDTYKDSLIS 298
>ref|NP_001191287.1| testican-3 isoform 9 [Homo sapiens].
Length = 313
Score = 458 bits (1178), Expect = e-129
Identities = 213/268 (79%), Positives = 230/268 (85%)
Frame = +1
Query: 340 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNM 519
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRDDDYFRTWSPG+ FDQALDPAKDPCL M
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDDDYFRTWSPGKPFDQALDPAKDPCLKM 90
Query: 520 KCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGS 699
KC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPVCGS
Sbjct: 91 KCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGS 150
Query: 700 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 879
DGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+ RL
Sbjct: 151 DGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRL 210
Query: 880 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1059
RDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL
Sbjct: 211 RDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 270
Query: 1060 GSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
SIYLDKNEQCT+AFFNSCDTY+D IS
Sbjct: 271 RSIYLDKNEQCTKAFFNSCDTYKDSLIS 298
>ref|NP_058646.2| testican-3 isoform 2 [Homo sapiens].
Length = 436
Score = 452 bits (1164), Expect = e-127
Identities = 213/271 (78%), Positives = 230/271 (84%), Gaps = 3/271 (1%)
Frame = +1
Query: 340 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPC 510
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRD DDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWSPGKPFDQALDPAKDPC 90
Query: 511 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 690
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 91 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 150
Query: 691 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 870
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+
Sbjct: 151 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVA 210
Query: 871 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1050
RLRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1051 SELGSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
SEL SIYLDKNEQCT+AFFNSCDTY+D IS
Sbjct: 271 SELRSIYLDKNEQCTKAFFNSCDTYKDSLIS 301
>ref|NP_001191288.1| testican-3 isoform 10 [Homo sapiens].
Length = 316
Score = 452 bits (1164), Expect = e-127
Identities = 213/271 (78%), Positives = 230/271 (84%), Gaps = 3/271 (1%)
Frame = +1
Query: 340 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPC 510
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRD DDYFRTWSPG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWSPGKPFDQALDPAKDPC 90
Query: 511 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 690
L MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPV
Sbjct: 91 LKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPV 150
Query: 691 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 870
CGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+
Sbjct: 151 CGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVA 210
Query: 871 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1050
RLRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1051 SELGSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
SEL SIYLDKNEQCT+AFFNSCDTY+D IS
Sbjct: 271 SELRSIYLDKNEQCTKAFFNSCDTYKDSLIS 301
>ref|NP_001191281.1| testican-3 isoform 3 [Homo sapiens].
Length = 385
Score = 399 bits (1025), Expect(2) = e-111
Identities = 188/235 (80%), Positives = 200/235 (85%)
Frame = +1
Query: 439 DDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGA 618
DDYFRTWSPG+ FDQALDPAKDPCL MKC RH+VCI Q S TAVCI RRL H +K+AG
Sbjct: 16 DDYFRTWSPGKPFDQALDPAKDPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGV 75
Query: 619 GHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCP 798
H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV+CEGHCPCP
Sbjct: 76 DHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCP 135
Query: 799 SDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSIL 978
SD S+S NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPERSRFDTSIL
Sbjct: 136 SDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSIL 195
Query: 979 PICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
PICKDSLGWMFNRLDTNYDLLLDQSEL SIYLDKNEQCT+AFFNSCDTY+D IS
Sbjct: 196 PICKDSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFFNSCDTYKDSLIS 250
Score = 22.7 bits (47), Expect(2) = e-111
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 252 NEWCYC 257
>ref|NP_001191285.1| testican-3 isoform 7 [Homo sapiens].
Length = 393
Score = 370 bits (951), Expect(2) = e-103
Identities = 180/268 (67%), Positives = 195/268 (72%)
Frame = +1
Query: 340 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNM 519
GR GG+FLDDKQWL+T+SQYD+E GQWN+FRDDDYFRTWSPG+ FDQALDPAKDPCL M
Sbjct: 31 GRSDGGNFLDDKQWLTTISQYDKEVGQWNKFRDDDYFRTWSPGKPFDQALDPAKDPCLKM 90
Query: 520 KCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGS 699
KC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPVCGS
Sbjct: 91 KCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGS 150
Query: 700 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 879
DGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR
Sbjct: 151 DGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKR-------------- 196
Query: 880 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1059
FDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL
Sbjct: 197 --------------------------GFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 230
Query: 1060 GSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
SIYLDKNEQCT+AFFNSCDTY+D IS
Sbjct: 231 RSIYLDKNEQCTKAFFNSCDTYKDSLIS 258
Score = 22.7 bits (47), Expect(2) = e-103
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 260 NEWCYC 265
>ref|NP_001191283.1| testican-3 isoform 5 [Homo sapiens].
Length = 344
Score = 346 bits (888), Expect(2) = 2e-95
Identities = 165/209 (78%), Positives = 176/209 (84%)
Frame = +1
Query: 517 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCG 696
MKC RH+VCI Q S TAVCI RRL H +K+AG H+Q RG STC+QC V SPVCG
Sbjct: 1 MKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCG 60
Query: 697 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTR 876
SDGH YS QCKLEYQACVLGKQISV+CEGHCPCPSD S+S NVKR C+ LEFREV+ R
Sbjct: 61 SDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANR 120
Query: 877 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 1056
LRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE
Sbjct: 121 LRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 180
Query: 1057 LGSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
L SIYLDKNEQCT+AFFNSCDTY+D IS
Sbjct: 181 LRSIYLDKNEQCTKAFFNSCDTYKDSLIS 209
Score = 22.7 bits (47), Expect(2) = 2e-95
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 211 NEWCYC 216
>ref|NP_001191284.1| testican-3 isoform 6 [Homo sapiens].
Length = 340
Score = 307 bits (787), Expect(2) = 8e-84
Identities = 146/184 (79%), Positives = 158/184 (85%)
Frame = +1
Query: 592 AHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV 771
+ ++K+AG H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV
Sbjct: 22 SETMKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISV 81
Query: 772 RCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPE 951
+CEGHCPCPSD S+S NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPE
Sbjct: 82 KCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPE 141
Query: 952 RSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRD 1131
RSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL SIYLDKNEQCT+AFFNSCDTY+D
Sbjct: 142 RSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFFNSCDTYKD 201
Query: 1132 RSIS 1143
IS
Sbjct: 202 SLIS 205
Score = 22.7 bits (47), Expect(2) = 8e-84
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 207 NEWCYC 212
>ref|NP_001191282.1| testican-3 isoform 4 [Homo sapiens].
Length = 316
Score = 306 bits (785), Expect(2) = 1e-83
Identities = 146/181 (80%), Positives = 156/181 (86%)
Frame = +1
Query: 601 VKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCE 780
+K+AG H+Q RG STC+QC V SPVCGSDGH YS QCKLEYQACVLGKQISV+CE
Sbjct: 1 MKEAGVDHRQWRGPILSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISVKCE 60
Query: 781 GHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSR 960
GHCPCPSD S+S NVKR C+ LEFREV+ RLRDWFKALHESGSQNKK K LRPERSR
Sbjct: 61 GHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPERSR 120
Query: 961 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSI 1140
FDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL SIYLDKNEQCT+AFFNSCDTY+D I
Sbjct: 121 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFFNSCDTYKDSLI 180
Query: 1141 S 1143
S
Sbjct: 181 S 181
Score = 22.7 bits (47), Expect(2) = 1e-83
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 183 NEWCYC 188
>ref|NP_004589.1| testican-1 precursor [Homo sapiens].
Length = 439
Score = 292 bits (747), Expect(2) = 3e-79
Identities = 139/269 (51%), Positives = 178/269 (66%), Gaps = 3/269 (1%)
Frame = +1
Query: 346 PAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKC 525
P G+FLD+ QWLSTVSQYDR+ WNRFRDDDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 33 PNHGNFLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKC 91
Query: 526 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCG 696
H+VC+ Q TA+C+ ++ L K K G PS C+ C + VCG
Sbjct: 92 SPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAQKHWVG--PSNLVKCKPCPVAQSAMVCG 149
Query: 697 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTR 876
SDGH+Y+S+CKLE+ AC GK ++ C+G CPC + + CT E R +++R
Sbjct: 150 SDGHSYTSKCKLEFHACSTGKSLATLCDGPCPCLPEPEPPKHKAERSACTDKELRNLASR 209
Query: 877 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 1056
L+DWF ALHE ++ K S + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE
Sbjct: 210 LKDWFGALHEDANRVIKPTSS-NTAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDPSE 268
Query: 1057 LGSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
+ +IYLDK E C + FNSCD+++D +S
Sbjct: 269 INAIYLDKYEPCIKPLFNSCDSFKDGKLS 297
Score = 22.7 bits (47), Expect(2) = 3e-79
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 299 NEWCYC 304
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,764,999
Number of extensions: 1449131
Number of successful extensions: 6291
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 6246
Number of HSP's successfully gapped: 26
Length of query: 388
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,868,908
Effective search space: 4222769872
Effective search space used: 4222769872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002311
(1165 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076178.1| testican-3 precursor [Mus musculus]. 447 e-126
Alignment gi|NP_001159935.1| testican-1 isoform 3 precursor [Mus musculus]. 294 6e-80
Alignment gi|NP_001159937.1| testican-1 isoform 5 precursor [Mus musculus]. 294 6e-80
Alignment gi|NP_033288.2| testican-1 isoform 1 precursor [Mus musculus]. 289 2e-78
Alignment gi|NP_001159936.1| testican-1 isoform 4 precursor [Mus musculus]. 289 2e-78
Alignment gi|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus]. 284 7e-77
Alignment gi|NP_443720.1| testican-2 precursor [Mus musculus]. 273 2e-73
Alignment gi|NP_032073.2| follistatin-related protein 1 precursor [Mus mu... 54 2e-07
Alignment gi|NP_034227.3| SPARC-like protein 1 precursor [Mus musculus]. 53 4e-07
Alignment gi|NP_067617.3| agrin [Mus musculus]. 52 1e-06
>ref|NP_076178.1| testican-3 precursor [Mus musculus].
Length = 436
Score = 447 bits (1151), Expect = e-126
Identities = 206/271 (76%), Positives = 229/271 (84%), Gaps = 3/271 (1%)
Frame = +1
Query: 340 GRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPC 510
GR GG+FLD+KQWL+T+SQYD+E GQWN+FRD DDYFRTW+PG+ FDQALDPAKDPC
Sbjct: 31 GRSDGGNFLDEKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWNPGKPFDQALDPAKDPC 90
Query: 511 LNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPV 690
L KC RH+VCI Q + TA+CI RRL HS+K+ G HKQ RG P STC+ C SPV
Sbjct: 91 LKTKCSRHKVCITQDAQTALCISHRRLTHSMKEVGGSHKQWRGLPSSTCKPCPIAYASPV 150
Query: 691 CGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVS 870
CGSDGH+YSSQCKLEYQACVLGKQIS++CEG CPCPSD + + NVKR C+ LEFREV+
Sbjct: 151 CGSDGHSYSSQCKLEYQACVLGKQISIKCEGRCPCPSDKSMNIGRNVKRACSDLEFREVA 210
Query: 871 TRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 1050
RLRDWFKALHESGSQNKK K LRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ
Sbjct: 211 NRLRDWFKALHESGSQNKKTKALLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQ 270
Query: 1051 SELGSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
SELGSIYLDKNEQCT+AFFNSCDTY+D IS
Sbjct: 271 SELGSIYLDKNEQCTKAFFNSCDTYKDSLIS 301
>ref|NP_001159935.1| testican-1 isoform 3 precursor [Mus musculus].
Length = 439
Score = 294 bits (753), Expect(2) = 6e-80
Identities = 140/265 (52%), Positives = 177/265 (66%), Gaps = 3/265 (1%)
Frame = +1
Query: 358 SFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHE 537
+FLD+ QWLSTVSQYDR+ WNRFRDDDYFR W+P + FDQALDP+KDPCL +KC H+
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHK 95
Query: 538 VCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGSDGH 708
VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGSDGH
Sbjct: 96 VCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGSDGH 153
Query: 709 AYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDW 888
Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL+DW
Sbjct: 154 TYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRLKDW 213
Query: 889 FKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSI 1068
F ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +I
Sbjct: 214 FGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAI 272
Query: 1069 YLDKNEQCTEAFFNSCDTYRDRSIS 1143
YLDK E C + FNSCD+++D +S
Sbjct: 273 YLDKYEPCIKPLFNSCDSFKDGKLS 297
Score = 22.7 bits (47), Expect(2) = 6e-80
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 299 NEWCYC 304
>ref|NP_001159937.1| testican-1 isoform 5 precursor [Mus musculus].
Length = 364
Score = 294 bits (753), Expect(2) = 6e-80
Identities = 140/265 (52%), Positives = 177/265 (66%), Gaps = 3/265 (1%)
Frame = +1
Query: 358 SFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHE 537
+FLD+ QWLSTVSQYDR+ WNRFRDDDYFR W+P + FDQALDP+KDPCL +KC H+
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHK 95
Query: 538 VCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGSDGH 708
VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGSDGH
Sbjct: 96 VCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGSDGH 153
Query: 709 AYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDW 888
Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL+DW
Sbjct: 154 TYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRLKDW 213
Query: 889 FKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSI 1068
F ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +I
Sbjct: 214 FGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAI 272
Query: 1069 YLDKNEQCTEAFFNSCDTYRDRSIS 1143
YLDK E C + FNSCD+++D +S
Sbjct: 273 YLDKYEPCIKPLFNSCDSFKDGKLS 297
Score = 22.7 bits (47), Expect(2) = 6e-80
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 299 NEWCYC 304
>ref|NP_033288.2| testican-1 isoform 1 precursor [Mus musculus].
Length = 442
Score = 289 bits (739), Expect(2) = 2e-78
Identities = 140/268 (52%), Positives = 177/268 (66%), Gaps = 6/268 (2%)
Frame = +1
Query: 358 SFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKCG 528
+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 529 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 699
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 153
Query: 700 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 879
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 154 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 213
Query: 880 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1059
+DWF ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 214 KDWFGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 272
Query: 1060 GSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
+IYLDK E C + FNSCD+++D +S
Sbjct: 273 NAIYLDKYEPCIKPLFNSCDSFKDGKLS 300
Score = 22.7 bits (47), Expect(2) = 2e-78
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 302 NEWCYC 307
>ref|NP_001159936.1| testican-1 isoform 4 precursor [Mus musculus].
Length = 367
Score = 289 bits (739), Expect(2) = 2e-78
Identities = 140/268 (52%), Positives = 177/268 (66%), Gaps = 6/268 (2%)
Frame = +1
Query: 358 SFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKCG 528
+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 529 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 699
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 153
Query: 700 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 879
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 154 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 213
Query: 880 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1059
+DWF ALHE ++ K S P + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 214 KDWFGALHEDANRVIKPTSS-DPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 272
Query: 1060 GSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
+IYLDK E C + FNSCD+++D +S
Sbjct: 273 NAIYLDKYEPCIKPLFNSCDSFKDGKLS 300
Score = 22.7 bits (47), Expect(2) = 2e-78
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 302 NEWCYC 307
>ref|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus].
Length = 441
Score = 284 bits (726), Expect(2) = 7e-77
Identities = 138/268 (51%), Positives = 174/268 (64%), Gaps = 6/268 (2%)
Frame = +1
Query: 358 SFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKCG 528
+FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 37 NFLDNDQWLSTVSQYDRDK-YWNRFRDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCS 95
Query: 529 RHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPST---CRQCLGVSMSPVCGS 699
H+VC+ Q TA+C+ ++ L K HK G PS C+ C + VCGS
Sbjct: 96 PHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLG--PSNLVKCKPCPVAQSAMVCGS 153
Query: 700 DGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTRL 879
DGH Y+S+CKLE+ AC GK ++ C+G CPC + K CT E R +++RL
Sbjct: 154 DGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL 213
Query: 880 RDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSEL 1059
+DWF ALHE N+ K + FDTSILPICKDSLGWMFN+LD NYDLLLD SE+
Sbjct: 214 KDWFGALHEDA--NRVIKPTSSDPAQGFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEI 271
Query: 1060 GSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
+IYLDK E C + FNSCD+++D +S
Sbjct: 272 NAIYLDKYEPCIKPLFNSCDSFKDGKLS 299
Score = 22.7 bits (47), Expect(2) = 7e-77
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 301 NEWCYC 306
>ref|NP_443720.1| testican-2 precursor [Mus musculus].
Length = 423
Score = 273 bits (698), Expect = 2e-73
Identities = 127/268 (47%), Positives = 175/268 (65%), Gaps = 4/268 (1%)
Frame = +1
Query: 355 GSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDPCLNMKC 525
G+F++D+QWLS++SQY + WNRFRD DDY ++W + D+ALD KDPC +KC
Sbjct: 36 GNFMEDEQWLSSISQYSGKIKHWNRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKC 95
Query: 526 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCGSDG 705
RH+VC+ QG A+CI +++L H +K + G S C+ C ++ VCGSDG
Sbjct: 96 SRHKVCVAQGYQRAMCISRKKLEHRIKQPSL---KLHGGKDSVCKPCHMAQLASVCGSDG 152
Query: 706 HAYSSQCKLEYQACVLGKQISVRCEGHCPCPSD-TTRSSSGNVKRVCTSLEFREVSTRLR 882
H YSS CKLE QAC+ KQ++VRCEG CPCP++ +T S++ + CT + ++ RLR
Sbjct: 153 HTYSSVCKLEQQACLSSKQLAVRCEGPCPCPTEQSTASTTDSKSETCTGQDLADLGDRLR 212
Query: 883 DWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELG 1062
DWF+ L E+ QN A + P + D S+ CKDS+GWMF++LDT+ DL LDQ+EL
Sbjct: 213 DWFQLLRENSKQNGSANSATNP--AGLDKSLGASCKDSIGWMFSKLDTSGDLFLDQTELA 270
Query: 1063 SIYLDKNEQCTEAFFNSCDTYRDRSIST 1146
+I LDK E C FFNSCDTY+D +ST
Sbjct: 271 AINLDKYEVCIRPFFNSCDTYKDGRVST 298
>ref|NP_032073.2| follistatin-related protein 1 precursor [Mus musculus].
Length = 306
Score = 54.3 bits (129), Expect = 2e-07
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = +1
Query: 613 GAGHK---QRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEG 783
GAG + +G P C + PVCGS+G Y + C+L AC+ G +I V +G
Sbjct: 35 GAGRECAVTEKGEPTCLCIEQCKPHKRPVCGSNGKTYLNHCELHRDACLTGSKIQVDYDG 94
Query: 784 HCPCPSDTTRSSSGNVKRVCTSLEFREVSTRLRDWFKA 897
HC + S+S VC E+ RL W +A
Sbjct: 95 HCKEKKSASPSAS---PVVCYQANRDELRRRLIQWLEA 129
>ref|NP_034227.3| SPARC-like protein 1 precursor [Mus musculus].
Length = 650
Score = 53.1 bits (126), Expect = 4e-07
Identities = 58/245 (23%), Positives = 83/245 (33%), Gaps = 33/245 (13%)
Frame = +1
Query: 508 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 687
C N +C R +C G C+ Q P TC +
Sbjct: 419 CTNFQCKRGHICKTDPQGKPHCVCQ--------------------DPETCPPAK--ILDQ 456
Query: 688 VCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSL 852
CG+D Y+S C L C L G Q+ + G C CT
Sbjct: 457 ACGTDNQTYASSCHLFATKCRLEGTKKGHQLQLDYFGACKSIP------------ACTDF 504
Query: 853 EFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILPIC 987
E + R+RDW K + G N+K + ++ + R D I +
Sbjct: 505 EVAQFPLRMRDWLKNILMQLYEPNPKHGGYLNEKQRSKVKKIYLDEKRLLAGDHPIELLL 564
Query: 988 KD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFFNSCDTYR 1128
+D + W FN LD + D +L SEL + L E C FF CD +
Sbjct: 565 RDFKKNYHMYVYPVHWQFNELDQHPADRILTHSELAPLRASLVPMEHCITRFFEECDPNK 624
Query: 1129 DRSIS 1143
D+ I+
Sbjct: 625 DKHIT 629
>ref|NP_067617.3| agrin [Mus musculus].
Length = 2034
Score = 51.6 bits (122), Expect = 1e-06
Identities = 37/129 (28%), Positives = 47/129 (36%), Gaps = 19/129 (14%)
Frame = +1
Query: 490 DPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCL 669
D PC +C C V+ +G AVC C++
Sbjct: 464 DQTPSPCRGAQCAFGATCTVK-NGKAVC--------------------------ECQRVC 496
Query: 670 GVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV-------RC------------EGHCP 792
PVCGSDG Y S C+LE AC LG++I V RC G C
Sbjct: 497 SGGYDPVCGSDGVTYGSVCELESMACTLGREIRVARRGPCDRCGQCRFGSLCEVETGRCV 556
Query: 793 CPSDTTRSS 819
CPS+ S+
Sbjct: 557 CPSECVESA 565
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,060,148
Number of extensions: 1199301
Number of successful extensions: 5259
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 5178
Number of HSP's successfully gapped: 17
Length of query: 388
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 285
Effective length of database: 12,523,851
Effective search space: 3569297535
Effective search space used: 3569297535
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002311
(1165 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa]. 566 e-162
Alignment gi|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa]. 566 e-162
Alignment gi|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa]. 561 e-160
Alignment gi|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa]. 236 2e-62
Alignment gi|XP_003360811.1| PREDICTED: testican-2-like, partial [Sus scr... 230 1e-60
Alignment gi|XP_003354339.1| PREDICTED: testican-1-like [Sus scrofa]. 181 9e-46
Alignment gi|XP_003354335.1| PREDICTED: testican-1-like [Sus scrofa]. 126 8e-30
Alignment gi|NP_001090891.1| SPARC-like protein 1 [Sus scrofa]. 55 1e-07
Alignment gi|XP_003356160.1| PREDICTED: agrin-like [Sus scrofa]. 55 1e-07
Alignment gi|XP_003357144.1| PREDICTED: SPARC-like protein 1-like [Sus sc... 53 3e-07
>ref|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa].
Length = 424
Score = 567 bits (1460), Expect = e-162
Identities = 267/269 (99%), Positives = 267/269 (99%)
Frame = +1
Query: 337 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN 516
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN 83
Query: 517 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCG 696
MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSPVCG
Sbjct: 84 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSPVCG 143
Query: 697 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTR 876
SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSS GNVKRVCTSLEFREVSTR
Sbjct: 144 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTR 203
Query: 877 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 1056
LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE
Sbjct: 204 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 263
Query: 1057 LGSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
LGSIYLDKNEQCTEAFFNSCDTYRDRSIS
Sbjct: 264 LGSIYLDKNEQCTEAFFNSCDTYRDRSIS 292
>ref|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa].
Length = 424
Score = 567 bits (1460), Expect = e-162
Identities = 267/269 (99%), Positives = 267/269 (99%)
Frame = +1
Query: 337 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN 516
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLN 83
Query: 517 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSPVCG 696
MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSPVCG
Sbjct: 84 MKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSPVCG 143
Query: 697 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREVSTR 876
SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSS GNVKRVCTSLEFREVSTR
Sbjct: 144 SDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTR 203
Query: 877 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 1056
LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE
Sbjct: 204 LRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSE 263
Query: 1057 LGSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
LGSIYLDKNEQCTEAFFNSCDTYRDRSIS
Sbjct: 264 LGSIYLDKNEQCTEAFFNSCDTYRDRSIS 292
>ref|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa].
Length = 427
Score = 561 bits (1446), Expect = e-160
Identities = 267/272 (98%), Positives = 267/272 (98%), Gaps = 3/272 (1%)
Frame = +1
Query: 337 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD---DDYFRTWSPGRAFDQALDPAKDP 507
TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRD DDYFRTWSPGRAFDQALDPAKDP
Sbjct: 24 TGRPAGGSFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDP 83
Query: 508 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSMSP 687
CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG PPSTCRQCLGVSMSP
Sbjct: 84 CLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSMSP 143
Query: 688 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSLEFREV 867
VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSS GNVKRVCTSLEFREV
Sbjct: 144 VCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREV 203
Query: 868 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 1047
STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD
Sbjct: 204 STRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLD 263
Query: 1048 QSELGSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
QSELGSIYLDKNEQCTEAFFNSCDTYRDRSIS
Sbjct: 264 QSELGSIYLDKNEQCTEAFFNSCDTYRDRSIS 295
>ref|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa].
Length = 413
Score = 236 bits (601), Expect = 2e-62
Identities = 111/237 (46%), Positives = 149/237 (62%), Gaps = 1/237 (0%)
Frame = +1
Query: 439 DDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGA 618
DDY ++W + D+ALD KDPC +KC RH+VCI QG A+CI +++L H +K
Sbjct: 56 DDYIKSWEDNQQGDEALDTTKDPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPAL 115
Query: 619 GHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCP 798
+ G+ + C+ C ++ VCGSDGH YSS CKLE QAC+ KQ++VRCEG CPCP
Sbjct: 116 ---KLHGNKDTACKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLTVRCEGPCPCP 172
Query: 799 SDTTRSSSGNVK-RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSI 975
++ +S+ + K CT + ++ RLRDWF+ LHE+ QN S D S+
Sbjct: 173 TEQAATSTADGKPETCTGQDLADLGDRLRDWFQLLHENSKQNGSVSSGANLA-SGLDKSL 231
Query: 976 LPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSIST 1146
CKDS+GWMF++LDT+ DL LDQ EL +I LDK E C FFNSCDTY+D +ST
Sbjct: 232 GASCKDSIGWMFSKLDTSADLFLDQMELAAINLDKYEVCIRPFFNSCDTYKDGRVST 288
>ref|XP_003360811.1| PREDICTED: testican-2-like, partial [Sus scrofa].
Length = 351
Score = 230 bits (586), Expect = 1e-60
Identities = 108/231 (46%), Positives = 145/231 (62%), Gaps = 1/231 (0%)
Frame = +1
Query: 436 DDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAG 615
+DDY ++W + D+ALD KDPC +KC RH+VCI QG A+CI +++L H +K
Sbjct: 3 EDDYIKSWEDNQQGDEALDTTKDPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPA 62
Query: 616 AGHKQRRGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPC 795
+ G+ + C+ C ++ VCGSDGH YSS CKLE QAC+ KQ++VRCEG CPC
Sbjct: 63 L---KLHGNKDTACKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLTVRCEGPCPC 119
Query: 796 PSDTTRSSSGNVK-RVCTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTS 972
P++ +S+ + K CT + ++ RLRDWF+ LHE+ QN S D S
Sbjct: 120 PTEQAATSTADGKPETCTGQDLADLGDRLRDWFQLLHENSKQNGSVSSGAN-LASGLDKS 178
Query: 973 ILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTY 1125
+ CKDS+GWMF++LDT+ DL LDQ EL +I LDK E C FFNSCDTY
Sbjct: 179 LGASCKDSIGWMFSKLDTSADLFLDQMELAAINLDKYEVCIRPFFNSCDTY 229
>ref|XP_003354339.1| PREDICTED: testican-1-like [Sus scrofa].
Length = 271
Score = 181 bits (458), Expect = 9e-46
Identities = 80/151 (52%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Frame = +1
Query: 346 PAGGSFLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKC 525
P G+FLD+ QWLSTVSQYDR+ WNRFRDDDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 33 PNNGNFLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKC 91
Query: 526 GRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRG-SPPSTCRQCLGVSMSPVCGSD 702
H+VC+ Q TA+C+ ++ L K HK G S C+ C + + VCGSD
Sbjct: 92 SPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSD 151
Query: 703 GHAYSSQCKLEYQACVLGKQISVRCEGHCPC 795
GH Y+S+CKLE+ AC GK ++ C+G CPC
Sbjct: 152 GHTYTSKCKLEFHACSTGKSLTTLCDGPCPC 182
>ref|XP_003354335.1| PREDICTED: testican-1-like [Sus scrofa].
Length = 258
Score = 126 bits (316), Expect(2) = 8e-30
Identities = 59/101 (58%), Positives = 74/101 (73%)
Frame = +1
Query: 841 CTSLEFREVSTRLRDWFKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRL 1020
CT E R +++RL+DWF ALHE ++ K S + RFDTSILPICKDSLGWMFN+L
Sbjct: 17 CTDKELRNLASRLKDWFGALHEDANRVIKPTSS-DAAQGRFDTSILPICKDSLGWMFNKL 75
Query: 1021 DTNYDLLLDQSELGSIYLDKNEQCTEAFFNSCDTYRDRSIS 1143
D NYDLLLD SE+ +IYLDK E C + FNSCD+++D +S
Sbjct: 76 DMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFKDGKLS 116
Score = 22.7 bits (47), Expect(2) = 8e-30
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3
Query: 1146 NEWCYC 1163
NEWCYC
Sbjct: 118 NEWCYC 123
>ref|NP_001090891.1| SPARC-like protein 1 [Sus scrofa].
Length = 662
Score = 54.7 bits (130), Expect = 1e-07
Identities = 59/247 (23%), Positives = 88/247 (35%), Gaps = 33/247 (13%)
Frame = +1
Query: 502 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 681
D C++ +C R +C G C+ Q P TC +
Sbjct: 429 DSCMSFQCKRGHICKADQQGKPHCVCQ--------------------DPVTCPPTK--LL 466
Query: 682 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSSGNVKRVCT 846
VCG+D Y+S C L C L G Q+ + G C CT
Sbjct: 467 DQVCGTDNQTYASSCHLFATKCRLEGTKKGHQLQLDYFGACKSIP------------ACT 514
Query: 847 SLEFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILP 981
E + R+RDW K + +G N+K + ++ + R D SI
Sbjct: 515 DFEVTQFPLRMRDWLKNILMQLYEPNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDL 574
Query: 982 ICKD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFFNSCDT 1122
+ +D + W F+ LD + D +L SEL + L E C FF CD
Sbjct: 575 LLRDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHSELAPLRASLVPMEHCITRFFGECDP 634
Query: 1123 YRDRSIS 1143
+D+ I+
Sbjct: 635 NKDKHIT 641
>ref|XP_003356160.1| PREDICTED: agrin-like [Sus scrofa].
Length = 1015
Score = 54.7 bits (130), Expect = 1e-07
Identities = 41/130 (31%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Frame = +1
Query: 463 PGRAFDQALDPA--KDPCLNMKCGRHEVCIVQGSG-TAVCIGQRRLAHSVKDAGAGHKQR 633
P RA Q L A +DPC N+ C C G TA C+
Sbjct: 38 PLRASHQQLCQAGMRDPCSNITCSFGSTCARSSDGLTATCLC------------------ 79
Query: 634 RGSPPSTCRQCLGVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTR 813
P+TC LG SPVCGSDG Y S+C+L AC + + + +G C D +
Sbjct: 80 ----PATC---LGAPESPVCGSDGTDYPSECQLLRHACARQENVFKKFDGPC----DPCQ 128
Query: 814 SSSGNVKRVC 843
+ ++ RVC
Sbjct: 129 GALNDLSRVC 138
Score = 52.8 bits (125), Expect = 4e-07
Identities = 38/129 (29%), Positives = 49/129 (37%), Gaps = 19/129 (14%)
Frame = +1
Query: 490 DPAKDPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCL 669
D PCL ++C C V+ +G A C+ C+Q
Sbjct: 269 DQPPSPCLGVQCPFGATCAVK-NGEAECV--------------------------CQQTC 301
Query: 670 GVSMSPVCGSDGHAYSSQCKLEYQACVLGKQISV-------RC------------EGHCP 792
PVCGSDG Y S C+LE AC LG++I V RC G C
Sbjct: 302 SGLYDPVCGSDGVTYGSACELEATACALGQEIRVARRGPCDRCGQCRFGALCEAETGRCV 361
Query: 793 CPSDTTRSS 819
CPS+ S+
Sbjct: 362 CPSECVASA 370
>ref|XP_003357144.1| PREDICTED: SPARC-like protein 1-like [Sus scrofa].
Length = 705
Score = 53.1 bits (126), Expect = 3e-07
Identities = 58/245 (23%), Positives = 89/245 (36%), Gaps = 31/245 (12%)
Frame = +1
Query: 502 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGSPPSTCRQCLGVSM 681
D C++ +C R +C G C+ Q P TC +
Sbjct: 472 DSCMSFQCKRGHICKADQQGKPHCVCQ--------------------DPVTCPPTK--LL 509
Query: 682 SPVCGSDGHAYSSQCKLEYQACVL---GKQISVRCEGHCPCPSDTTRSSSGNVKRVCTSL 852
VCG+D Y+S C L C L K+ ++ + C S CT
Sbjct: 510 DQVCGTDNQTYASSCHLFATKCRLEGTKKEHQLQLDYFGACKSIP----------ACTDF 559
Query: 853 EFREVSTRLRDWFKAL---------HESGSQNKKAKGSLRP---ERSRF---DTSILPIC 987
E + R+RDW K + +G N+K + ++ + R D SI +
Sbjct: 560 EVTQFPLRMRDWLKNILMQLYEPNPEHAGYLNEKQRNKVKKIYLDEKRLLAGDHSIDLLL 619
Query: 988 KD----------SLGWMFNRLDTN-YDLLLDQSELGSI--YLDKNEQCTEAFFNSCDTYR 1128
+D + W F+ LD + D +L SEL + L E C FF CD +
Sbjct: 620 RDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHSELAPLRASLVPMEHCITRFFGECDPNK 679
Query: 1129 DRSIS 1143
D+ I+
Sbjct: 680 DKHIT 684
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,256,635
Number of extensions: 982537
Number of successful extensions: 4349
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4312
Number of HSP's successfully gapped: 14
Length of query: 388
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 287
Effective length of database: 8,829,335
Effective search space: 2534019145
Effective search space used: 2534019145
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002311
(1165 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 720 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 720 bits (363), Expect = 0.0
Identities = 363/363 (100%)
Strand = Plus / Plus
Query: 77 aaccgggagcggcgccgggaagcggctccaggagcctgtccagcgcgtcaggcagggccg 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086018 aaccgggagcggcgccgggaagcggctccaggagcctgtccagcgcgtcaggcagggccg 23086077
Query: 137 agcggctcaccagctttgcgccgagccccacctccccacccgctcccggcctgcggtgcc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086078 agcggctcaccagctttgcgccgagccccacctccccacccgctcccggcctgcggtgcc 23086137
Query: 197 ccgatcccgtccgggccaagacgcgcggtcccggccccggtgtgacgcggcccccgtgtc 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086138 ccgatcccgtccgggccaagacgcgcggtcccggccccggtgtgacgcggcccccgtgtc 23086197
Query: 257 tccttccccagatgctccgggcgccggccgtgctgtgcgtgtgcgcggccgcctggtgcg 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086198 tccttccccagatgctccgggcgccggccgtgctgtgcgtgtgcgcggccgcctggtgcg 23086257
Query: 317 cgcaggctctggcggtggccacgggccggccggccggcggcagttttctggacgacaaac 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086258 cgcaggctctggcggtggccacgggccggccggccggcggcagttttctggacgacaaac 23086317
Query: 377 aatggctcagcacggtgtcccagtacgaccgggaggccgggcagtggaaccgattccgag 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086318 aatggctcagcacggtgtcccagtacgaccgggaggccgggcagtggaaccgattccgag 23086377
Query: 437 acg 439
|||
Sbjct: 23086378 acg 23086380
Score = 396 bits (200), Expect = e-107
Identities = 207/208 (99%), Gaps = 1/208 (0%)
Strand = Plus / Plus
Query: 959 gatttgataccagtattttgccaatctgcaaggattcacttggctggatgtttaacagac 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23492515 gatttgataccagtattttgccaatctgcaaggattcacttggctggatgtttaacagac 23492574
Query: 1019 tggacacaaactacgacctgctcctggaccagtcggagctggggagcatttacctggaca 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23492575 tggacacaaactacgacctgctcctggaccagtcggagctggggagcatttacctggaca 23492634
Query: 1079 agaatgagcagtgcacggaggccttcttcaactcctgtgacacatacagggaccgctcca 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23492635 agaatgagcagtgcacggaggccttcttcaactcctgtgacacatacagggaccgctcca 23492694
Query: 1139 tctcc-acaacgagtggtgctactgctt 1165
||||| ||||||||||||||||||||||
Sbjct: 23492695 tctccaacaacgagtggtgctactgctt 23492722
Score = 246 bits (124), Expect = 2e-62
Identities = 127/128 (99%)
Strand = Plus / Plus
Query: 596 acagtgtgaaagatgcaggagccgggcataagcagcggaggggttccccgccatccacct 655
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 23322392 acagtgtgaaagatgcaggagccgggcataagcagcggaggggtcccccgccatccacct 23322451
Query: 656 gcaggcagtgcttgggggtctccatgagccctgtctgtggctcagatggacatgcctact 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23322452 gcaggcagtgcttgggggtctccatgagccctgtctgtggctcagatggacatgcctact 23322511
Query: 716 cttcccag 723
||||||||
Sbjct: 23322512 cttcccag 23322519
Score = 244 bits (123), Expect = 9e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 837 agtgtgcaccagcctggagttcagggaggtgtcgaccaggctgcgggactggttcaaggc 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23476186 agtgtgcaccagcctggagttcagggaggtgtcgaccaggctgcgggactggttcaaggc 23476245
Query: 897 ccttcacgagagcgggagccagaacaagaaggccaaaggctccctgcggccggagagaag 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23476246 ccttcacgagagcgggagccagaacaagaaggccaaaggctccctgcggccggagagaag 23476305
Query: 957 cag 959
|||
Sbjct: 23476306 cag 23476308
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 484 gctttagatccagctaaagacccgtgcttgaatatgaaatgtggccgccacgaagtgtgc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23259854 gctttagatccagctaaagacccgtgcttgaatatgaaatgtggccgccacgaagtgtgc 23259913
Query: 544 attgtgcaaggttctgggaccgcggtctgcattggccagcggagacttgcccacag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23259914 attgtgcaaggttctgggaccgcggtctgcattggccagcggagacttgcccacag 23259969
Score = 226 bits (114), Expect = 2e-56
Identities = 117/118 (99%)
Strand = Plus / Plus
Query: 721 cagtgcaaactagaataccaggcgtgtgtcttaggaaagcagatctcagtgagatgtgaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23328355 cagtgcaaactagaataccaggcgtgtgtcttaggaaagcagatctcagtgagatgtgaa 23328414
Query: 781 gggcattgcccatgtccttcagatacgaccaggagctcaagcggaaatgtgaaaagag 838
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 23328415 gggcattgcccatgtccttcagatacgaccaggagctcaagaggaaatgtgaaaagag 23328472
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 1 cgcgcagagcgaagcggcgtccgcgggtgggcacccgcgctctgggctt 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085942 cgcgcagagcgaagcggcgtccgcgggtgggcacccgcgctctgggctt 23085990
Score = 91.7 bits (46), Expect = 8e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 439 gatgattatttccgcacttggagtccaggaagagccttcgatcagg 484
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23216098 gatgattatttccgcacttggagtccaggaagagccttcgatcagg 23216143
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,597,560
Number of extensions: 136
Number of successful extensions: 136
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 8
Length of query: 1165
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1144
Effective length of database: 2,808,413,156
Effective search space: 3212824650464
Effective search space used: 3212824650464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)