Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002318
(1128 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032700.1| ras GTPase-activating protein-binding protei... 473 e-133
Alignment gi|NP_001039920.1| ras GTPase-activating protein-binding protei... 243 2e-64
>ref|NP_001032700.1| ras GTPase-activating protein-binding protein 1 [Bos taurus].
Length = 465
Score = 473 bits (1218), Expect = e-133
Identities = 245/329 (74%), Positives = 248/329 (75%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IHRKVM+QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
Sbjct: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDDSGTFYDQTVSN 680
ANKFYVHNDIFRYQDEVFGGF DDSGTFYDQTVSN
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFITEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSN 180
Query: 681 DLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADIAQT 860
DL LEE APEDVQKSSSPAPADIAQT
Sbjct: 181 DLEEHLEEPVAEPEPEPEPEPEQEPVSEVQEEKSEPVLEETAPEDVQKSSSPAPADIAQT 240
Query: 861 VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESXXXXXXXXXXX 1040
VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPE+KPES
Sbjct: 241 VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPLQRPQRDQ 300
Query: 1041 XXXXXXINVPPQRGPKTXREAGEQGDVEP 1127
INVPPQRGP+ REAGEQGDVEP
Sbjct: 301 RVREQRINVPPQRGPRPVREAGEQGDVEP 329
>ref|NP_001039920.1| ras GTPase-activating protein-binding protein 2 [Bos taurus].
Length = 449
Score = 243 bits (621), Expect = 2e-64
Identities = 113/139 (81%), Positives = 129/139 (92%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFG 557
NKFYVHND+FRY+DEVFG
Sbjct: 121 PNKFYVHNDMFRYEDEVFG 139
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,828,897
Number of extensions: 1027595
Number of successful extensions: 3490
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3479
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002318
(1128 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867372.1| PREDICTED: similar to Ras-GTPase-activating pro... 468 e-132
Alignment gi|XP_536460.1| PREDICTED: similar to Ras-GTPase-activating pro... 468 e-132
Alignment gi|XP_867362.1| PREDICTED: similar to Ras-GTPase-activating pro... 382 e-106
Alignment gi|XP_535606.2| PREDICTED: similar to Ras-GTPase activating pro... 296 2e-80
Alignment gi|XP_848490.1| PREDICTED: similar to Ras-GTPase activating pro... 296 2e-80
Alignment gi|XP_856193.1| PREDICTED: similar to Ras-GTPase activating pro... 296 2e-80
Alignment gi|XP_856147.1| PREDICTED: similar to Ras-GTPase activating pro... 296 2e-80
Alignment gi|XP_856112.1| PREDICTED: similar to Ras-GTPase activating pro... 296 2e-80
Alignment gi|XP_855995.1| PREDICTED: similar to Ras-GTPase activating pro... 243 2e-64
Alignment gi|XP_867351.1| PREDICTED: similar to Ras-GTPase-activating pro... 127 1e-29
>ref|XP_867372.1| PREDICTED: similar to Ras-GTPase-activating protein binding protein 1
(GAP SH3-domain binding protein 1) (G3BP-1) (DNA helicase
VIII) (HDH-VIII) isoform 4 [Canis familiaris].
Length = 473
Score = 468 bits (1205), Expect = e-132
Identities = 241/329 (73%), Positives = 246/329 (74%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IHRKVM+QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
Sbjct: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDDSGTFYDQTVSN 680
ANKFYVHNDIFRYQDEVFGGF DDSGTFYDQ+VSN
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQSVSN 180
Query: 681 DLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADIAQT 860
DL LEE APED QKSSSPAP DIAQT
Sbjct: 181 DLEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKSEPVLEETAPEDTQKSSSPAPTDIAQT 240
Query: 861 VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESXXXXXXXXXXX 1040
VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPE+KPES
Sbjct: 241 VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRDQ 300
Query: 1041 XXXXXXINVPPQRGPKTXREAGEQGDVEP 1127
IN+PPQRGP+ REAGEQGDVEP
Sbjct: 301 RVREQRINIPPQRGPRPIREAGEQGDVEP 329
>ref|XP_536460.1| PREDICTED: similar to Ras-GTPase-activating protein binding protein 1
(GAP SH3-domain binding protein 1) (G3BP-1) (DNA helicase
VIII) (HDH-VIII) isoform 1 [Canis familiaris].
Length = 465
Score = 468 bits (1205), Expect = e-132
Identities = 241/329 (73%), Positives = 246/329 (74%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IHRKVM+QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
Sbjct: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDDSGTFYDQTVSN 680
ANKFYVHNDIFRYQDEVFGGF DDSGTFYDQ+VSN
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQSVSN 180
Query: 681 DLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADIAQT 860
DL LEE APED QKSSSPAP DIAQT
Sbjct: 181 DLEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKSEPVLEETAPEDTQKSSSPAPTDIAQT 240
Query: 861 VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESXXXXXXXXXXX 1040
VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPE+KPES
Sbjct: 241 VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRDQ 300
Query: 1041 XXXXXXINVPPQRGPKTXREAGEQGDVEP 1127
IN+PPQRGP+ REAGEQGDVEP
Sbjct: 301 RVREQRINIPPQRGPRPIREAGEQGDVEP 329
>ref|XP_867362.1| PREDICTED: similar to Ras-GTPase-activating protein binding protein 1
(GAP SH3-domain binding protein 1) (G3BP-1) (DNA helicase
VIII) (HDH-VIII) isoform 3 [Canis familiaris].
Length = 431
Score = 382 bits (981), Expect = e-106
Identities = 207/329 (62%), Positives = 212/329 (64%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IHRKVM+QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
Sbjct: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDDSGTFYDQTVSN 680
ANKFYVHNDIFRYQDEVFGGF DDSGTFYDQ+VSN
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQSVSN 180
Query: 681 DLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADIAQT 860
DL LEE APED QKSSSPAP DIAQT
Sbjct: 181 DLEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKSEPVLEETAPEDTQKSSSPAPTDIAQT 240
Query: 861 VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESXXXXXXXXXXX 1040
VQEDLR PRPE+KPES
Sbjct: 241 VQEDLR----------------------------------PRPESKPESQIPPQRPQRDQ 266
Query: 1041 XXXXXXINVPPQRGPKTXREAGEQGDVEP 1127
IN+PPQRGP+ REAGEQGDVEP
Sbjct: 267 RVREQRINIPPQRGPRPIREAGEQGDVEP 295
>ref|XP_535606.2| PREDICTED: similar to Ras-GTPase activating protein SH3
domain-binding protein 2 isoform a isoform 1 [Canis
familiaris].
Length = 482
Score = 296 bits (758), Expect = 2e-80
Identities = 161/291 (55%), Positives = 184/291 (63%), Gaps = 3/291 (1%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXD---DSGTFYDQT 671
NKFYVHND+FRY+DEVFG DSG +
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENADSGYYEAHP 180
Query: 672 VSNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADI 851
V+N + LEE KS+SP PA+
Sbjct: 181 VANGIEEPLEESSHEPEPEPDSETKTEELKPQVEEKNLEELEE-------KSTSPPPAEP 233
Query: 852 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPE 1004
QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR E KPE
Sbjct: 234 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVEAKPE 283
>ref|XP_848490.1| PREDICTED: similar to Ras-GTPase activating protein SH3
domain-binding protein 2 isoform a isoform 2 [Canis
familiaris].
Length = 482
Score = 296 bits (758), Expect = 2e-80
Identities = 161/291 (55%), Positives = 184/291 (63%), Gaps = 3/291 (1%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXD---DSGTFYDQT 671
NKFYVHND+FRY+DEVFG DSG +
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENADSGYYEAHP 180
Query: 672 VSNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADI 851
V+N + LEE KS+SP PA+
Sbjct: 181 VANGIEEPLEESSHEPEPEPDSETKTEELKPQVEEKNLEELEE-------KSTSPPPAEP 233
Query: 852 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPE 1004
QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR E KPE
Sbjct: 234 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVEAKPE 283
>ref|XP_856193.1| PREDICTED: similar to Ras-GTPase activating protein SH3
domain-binding protein 2 isoform a isoform 9 [Canis
familiaris].
Length = 483
Score = 296 bits (758), Expect = 2e-80
Identities = 161/291 (55%), Positives = 184/291 (63%), Gaps = 3/291 (1%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXD---DSGTFYDQT 671
NKFYVHND+FRY+DEVFG DSG +
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENADSGYYEAHP 180
Query: 672 VSNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADI 851
V+N + LEE KS+SP PA+
Sbjct: 181 VANGIEEPLEESSHEPEPEPDSETKTEELKPQVEEKNLEELEE-------KSTSPPPAEP 233
Query: 852 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPE 1004
QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR E KPE
Sbjct: 234 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVEAKPE 283
>ref|XP_856147.1| PREDICTED: similar to Ras-GTPase activating protein SH3
domain-binding protein 2 isoform a isoform 8 [Canis
familiaris].
Length = 483
Score = 296 bits (758), Expect = 2e-80
Identities = 161/291 (55%), Positives = 184/291 (63%), Gaps = 3/291 (1%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXD---DSGTFYDQT 671
NKFYVHND+FRY+DEVFG DSG +
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENADSGYYEAHP 180
Query: 672 VSNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADI 851
V+N + LEE KS+SP PA+
Sbjct: 181 VANGIEEPLEESSHEPEPEPDSETKTEELKPQVEEKNLEELEE-------KSTSPPPAEP 233
Query: 852 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPE 1004
QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR E KPE
Sbjct: 234 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVEAKPE 283
>ref|XP_856112.1| PREDICTED: similar to Ras-GTPase activating protein SH3
domain-binding protein 2 isoform a isoform 7 [Canis
familiaris].
Length = 481
Score = 296 bits (758), Expect = 2e-80
Identities = 161/291 (55%), Positives = 184/291 (63%), Gaps = 3/291 (1%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXD---DSGTFYDQT 671
NKFYVHND+FRY+DEVFG DSG +
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENADSGYYEAHP 180
Query: 672 VSNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADI 851
V+N + LEE KS+SP PA+
Sbjct: 181 VANGIEEPLEESSHEPEPEPDSETKTEELKPQVEEKNLEELEE-------KSTSPPPAEP 233
Query: 852 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPE 1004
QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR E KPE
Sbjct: 234 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVEAKPE 283
>ref|XP_855995.1| PREDICTED: similar to Ras-GTPase activating protein SH3
domain-binding protein 2 isoform b isoform 4 [Canis
familiaris].
Length = 449
Score = 243 bits (621), Expect = 2e-64
Identities = 113/139 (81%), Positives = 129/139 (92%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFG 557
NKFYVHND+FRY+DEVFG
Sbjct: 121 PNKFYVHNDMFRYEDEVFG 139
>ref|XP_867351.1| PREDICTED: similar to Ras-GTPase-activating protein binding protein
1 (GAP SH3-domain binding protein 1) (G3BP-1) (DNA
helicase VIII) (HDH-VIII) isoform 2 [Canis familiaris].
Length = 306
Score = 127 bits (320), Expect = 1e-29
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
Score = 59.7 bits (143), Expect = 5e-09
Identities = 39/102 (38%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Frame = +3
Query: 855 QTVQEDLRTFSWASVTS---KNLPPSGAVPVTGIPPHVVKVPASQ--------PRPETKP 1001
+ V +D TF SV++ ++L A P P + P S+ PRPE+KP
Sbjct: 69 EVVPDDSGTFYDQSVSNDLEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKSEPPRPESKP 128
Query: 1002 ESXXXXXXXXXXXXXXXXXINVPPQRGPKTXREAGEQGDVEP 1127
ES IN+PPQRGP+ REAGEQGDVEP
Sbjct: 129 ESQIPPQRPQRDQRVREQRINIPPQRGPRPIREAGEQGDVEP 170
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,615,192
Number of extensions: 1062794
Number of successful extensions: 3542
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3521
Number of HSP's successfully gapped: 19
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002318
(1128 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_938405.1| ras GTPase-activating protein-binding protein 1... 464 e-131
Alignment gi|NP_005745.1| ras GTPase-activating protein-binding protein 1... 464 e-131
Alignment gi|NP_036429.2| ras GTPase-activating protein-binding protein 2... 295 4e-80
Alignment gi|NP_987101.1| ras GTPase-activating protein-binding protein 2... 295 4e-80
Alignment gi|NP_987100.1| ras GTPase-activating protein-binding protein 2... 243 2e-64
>ref|NP_938405.1| ras GTPase-activating protein-binding protein 1 [Homo sapiens].
Length = 466
Score = 464 bits (1193), Expect = e-131
Identities = 240/330 (72%), Positives = 246/330 (74%), Gaps = 1/330 (0%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IHRKVM+QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
Sbjct: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDDSGTFYDQ-TVS 677
ANKFYVHNDIFRYQDEVFGGF DDSGTFYDQ VS
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVS 180
Query: 678 NDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADIAQ 857
ND+ LEE APED QKSSSPAPADIAQ
Sbjct: 181 NDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQ 240
Query: 858 TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESXXXXXXXXXX 1037
TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPE+KPES
Sbjct: 241 TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRD 300
Query: 1038 XXXXXXXINVPPQRGPKTXREAGEQGDVEP 1127
IN+PPQRGP+ REAGEQGD+EP
Sbjct: 301 QRVREQRINIPPQRGPRPIREAGEQGDIEP 330
>ref|NP_005745.1| ras GTPase-activating protein-binding protein 1 [Homo sapiens].
Length = 466
Score = 464 bits (1193), Expect = e-131
Identities = 240/330 (72%), Positives = 246/330 (74%), Gaps = 1/330 (0%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IHRKVM+QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
Sbjct: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDDSGTFYDQ-TVS 677
ANKFYVHNDIFRYQDEVFGGF DDSGTFYDQ VS
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVS 180
Query: 678 NDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADIAQ 857
ND+ LEE APED QKSSSPAPADIAQ
Sbjct: 181 NDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADIAQ 240
Query: 858 TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESXXXXXXXXXX 1037
TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPE+KPES
Sbjct: 241 TVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQRD 300
Query: 1038 XXXXXXXINVPPQRGPKTXREAGEQGDVEP 1127
IN+PPQRGP+ REAGEQGD+EP
Sbjct: 301 QRVREQRINIPPQRGPRPIREAGEQGDIEP 330
>ref|NP_036429.2| ras GTPase-activating protein-binding protein 2 isoform a [Homo
sapiens].
Length = 482
Score = 295 bits (756), Expect = 4e-80
Identities = 167/329 (50%), Positives = 193/329 (58%), Gaps = 3/329 (0%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDD---SGTFYDQT 671
NKFYVHND+FRY+DEVFG + SG +
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
Query: 672 VSNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADI 851
V+N + LEE KS++P PA+
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEE-------KSTTPPPAEP 233
Query: 852 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESXXXXXXXX 1031
QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR E KPE
Sbjct: 234 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVEAKPEVQSQPPRVR 292
Query: 1032 XXXXXXXXXINVPPQRGPKTXREAGEQGD 1118
P RGP+ R EQ D
Sbjct: 293 EQRPRERPGF---PPRGPRPGRGDMEQND 318
>ref|NP_987101.1| ras GTPase-activating protein-binding protein 2 isoform a [Homo
sapiens].
Length = 482
Score = 295 bits (756), Expect = 4e-80
Identities = 167/329 (50%), Positives = 193/329 (58%), Gaps = 3/329 (0%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDD---SGTFYDQT 671
NKFYVHND+FRY+DEVFG + SG +
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
Query: 672 VSNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADI 851
V+N + LEE KS++P PA+
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEE-------KSTTPPPAEP 233
Query: 852 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESXXXXXXXX 1031
QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR E KPE
Sbjct: 234 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVEAKPEVQSQPPRVR 292
Query: 1032 XXXXXXXXXINVPPQRGPKTXREAGEQGD 1118
P RGP+ R EQ D
Sbjct: 293 EQRPRERPGF---PPRGPRPGRGDMEQND 318
>ref|NP_987100.1| ras GTPase-activating protein-binding protein 2 isoform b [Homo
sapiens].
Length = 449
Score = 243 bits (621), Expect = 2e-64
Identities = 113/139 (81%), Positives = 129/139 (92%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFG 557
NKFYVHND+FRY+DEVFG
Sbjct: 121 PNKFYVHNDMFRYEDEVFG 139
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,835,279
Number of extensions: 1048014
Number of successful extensions: 3859
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3841
Number of HSP's successfully gapped: 7
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002318
(1128 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038744.1| ras GTPase-activating protein-binding protein 1... 454 e-128
Alignment gi|NP_001074266.1| ras GTPase-activating protein-binding protei... 295 3e-80
Alignment gi|NP_001074263.1| ras GTPase-activating protein-binding protei... 295 3e-80
Alignment gi|NP_035946.2| ras GTPase-activating protein-binding protein 2... 295 3e-80
Alignment gi|NP_001074265.1| ras GTPase-activating protein-binding protei... 243 2e-64
Alignment gi|NP_001074264.1| ras GTPase-activating protein-binding protei... 243 2e-64
>ref|NP_038744.1| ras GTPase-activating protein-binding protein 1 [Mus musculus].
Length = 465
Score = 454 bits (1169), Expect = e-128
Identities = 235/329 (71%), Positives = 243/329 (73%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSY HGGLDSNGKPADAVYGQKE
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKE 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IHRKVM+QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
Sbjct: 61 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDDSGTFYDQTVSN 680
ANKFYVHNDIFRYQDEVFGGF DDSGTFYDQTVSN
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSN 180
Query: 681 DLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADIAQT 860
DL LEEAAP+DVQKS+SPAPAD+A
Sbjct: 181 DLEEHLEEPVVEPEPEPEPEPEPEPVSDIQEDKPEAALEEAAPDDVQKSTSPAPADVA-P 239
Query: 861 VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESXXXXXXXXXXX 1040
QEDLRTFSWASVTSKNLPPSGAVPVTG PPHVVKVPASQPRPE+KP+S
Sbjct: 240 AQEDLRTFSWASVTSKNLPPSGAVPVTGTPPHVVKVPASQPRPESKPDSQIPPQRPQRDQ 299
Query: 1041 XXXXXXINVPPQRGPKTXREAGEQGDVEP 1127
IN+PPQRGP+ REAGE GDVEP
Sbjct: 300 RVREQRINIPPQRGPRPIREAGEPGDVEP 328
>ref|NP_001074266.1| ras GTPase-activating protein-binding protein 2 isoform a [Mus
musculus].
Length = 482
Score = 295 bits (756), Expect = 3e-80
Identities = 167/329 (50%), Positives = 195/329 (59%), Gaps = 3/329 (0%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDD--SGTFYD-QT 671
NKFYVHND+FRY+DEVFG + + +YD
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEDRQPSPEPVQENANSAYYDAHP 180
Query: 672 VSNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADI 851
V+N + LEE KS++P PA+
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKHLEELEE-------KSATPPPAEP 233
Query: 852 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESXXXXXXXX 1031
A QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR + KPE
Sbjct: 234 ASLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVDAKPEVQSQPPRVR 292
Query: 1032 XXXXXXXXXINVPPQRGPKTXREAGEQGD 1118
P RGP+ R EQ D
Sbjct: 293 EQRPRERPGF---PPRGPRPGRGDMEQND 318
>ref|NP_001074263.1| ras GTPase-activating protein-binding protein 2 isoform a [Mus
musculus].
Length = 482
Score = 295 bits (756), Expect = 3e-80
Identities = 167/329 (50%), Positives = 195/329 (59%), Gaps = 3/329 (0%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDD--SGTFYD-QT 671
NKFYVHND+FRY+DEVFG + + +YD
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEDRQPSPEPVQENANSAYYDAHP 180
Query: 672 VSNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADI 851
V+N + LEE KS++P PA+
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKHLEELEE-------KSATPPPAEP 233
Query: 852 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESXXXXXXXX 1031
A QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR + KPE
Sbjct: 234 ASLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVDAKPEVQSQPPRVR 292
Query: 1032 XXXXXXXXXINVPPQRGPKTXREAGEQGD 1118
P RGP+ R EQ D
Sbjct: 293 EQRPRERPGF---PPRGPRPGRGDMEQND 318
>ref|NP_035946.2| ras GTPase-activating protein-binding protein 2 isoform a [Mus
musculus].
Length = 482
Score = 295 bits (756), Expect = 3e-80
Identities = 167/329 (50%), Positives = 195/329 (59%), Gaps = 3/329 (0%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDD--SGTFYD-QT 671
NKFYVHND+FRY+DEVFG + + +YD
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEDRQPSPEPVQENANSAYYDAHP 180
Query: 672 VSNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADI 851
V+N + LEE KS++P PA+
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKHLEELEE-------KSATPPPAEP 233
Query: 852 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESXXXXXXXX 1031
A QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR + KPE
Sbjct: 234 ASLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVDAKPEVQSQPPRVR 292
Query: 1032 XXXXXXXXXINVPPQRGPKTXREAGEQGD 1118
P RGP+ R EQ D
Sbjct: 293 EQRPRERPGF---PPRGPRPGRGDMEQND 318
>ref|NP_001074265.1| ras GTPase-activating protein-binding protein 2 isoform b [Mus
musculus].
Length = 449
Score = 243 bits (621), Expect = 2e-64
Identities = 113/139 (81%), Positives = 129/139 (92%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFG 557
NKFYVHND+FRY+DEVFG
Sbjct: 121 PNKFYVHNDMFRYEDEVFG 139
>ref|NP_001074264.1| ras GTPase-activating protein-binding protein 2 isoform b [Mus
musculus].
Length = 449
Score = 243 bits (621), Expect = 2e-64
Identities = 113/139 (81%), Positives = 129/139 (92%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFG 557
NKFYVHND+FRY+DEVFG
Sbjct: 121 PNKFYVHNDMFRYEDEVFG 139
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,785,236
Number of extensions: 877842
Number of successful extensions: 3270
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3247
Number of HSP's successfully gapped: 9
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002318
(1128 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192334.1| ras GTPase-activating protein-binding protei... 478 e-135
Alignment gi|XP_003357029.1| PREDICTED: ras GTPase-activating protein-bin... 297 8e-81
Alignment gi|XP_003357028.1| PREDICTED: ras GTPase-activating protein-bin... 297 8e-81
Alignment gi|XP_003357027.1| PREDICTED: ras GTPase-activating protein-bin... 243 1e-64
>ref|NP_001192334.1| ras GTPase-activating protein-binding protein 1 [Sus scrofa].
Length = 465
Score = 478 bits (1229), Expect = e-135
Identities = 248/329 (75%), Positives = 249/329 (75%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
Sbjct: 61 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDDSGTFYDQTVSN 680
ANKFYVHNDIFRYQDEVFGGF DDSGTFYDQTVSN
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSN 180
Query: 681 DLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADIAQT 860
DL LEEAAPEDVQKSSSPAPADIAQT
Sbjct: 181 DLEEHLEEPVAEPEPDPEPEPEQEPVSEVQEEKSEPVLEEAAPEDVQKSSSPAPADIAQT 240
Query: 861 VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESXXXXXXXXXXX 1040
VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPES
Sbjct: 241 VQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPESQIPPQRPQRDQ 300
Query: 1041 XXXXXXINVPPQRGPKTXREAGEQGDVEP 1127
INVPPQRGP+ REAGEQGDVEP
Sbjct: 301 RVREQRINVPPQRGPRPVREAGEQGDVEP 329
>ref|XP_003357029.1| PREDICTED: ras GTPase-activating protein-binding protein 2 isoform 3
[Sus scrofa].
Length = 481
Score = 297 bits (760), Expect = 8e-81
Identities = 161/290 (55%), Positives = 185/290 (63%), Gaps = 2/290 (0%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDD--SGTFYDQTV 674
NKFYVHND+FRY+DEVFG + SG + V
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPTPEPVQETNSGYYEAHPV 180
Query: 675 SNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADIA 854
+N + LEE KS+SP PA+
Sbjct: 181 TNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEE-------KSTSPPPAEPV 233
Query: 855 QTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPE 1004
QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR ETKPE
Sbjct: 234 SLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVETKPE 282
>ref|XP_003357028.1| PREDICTED: ras GTPase-activating protein-binding protein 2 isoform 2
[Sus scrofa].
Length = 481
Score = 297 bits (760), Expect = 8e-81
Identities = 161/290 (55%), Positives = 185/290 (63%), Gaps = 2/290 (0%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFGGFXXXXXXXXXXXXXXXXXXXXXXXXXXDD--SGTFYDQTV 674
NKFYVHND+FRY+DEVFG + SG + V
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPTPEPVQETNSGYYEAHPV 180
Query: 675 SNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEAAPEDVQKSSSPAPADIA 854
+N + LEE KS+SP PA+
Sbjct: 181 TNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEE-------KSTSPPPAEPV 233
Query: 855 QTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPETKPE 1004
QE + FSWASVTSKNLPPSG V +GIPPH VK P SQPR ETKPE
Sbjct: 234 SLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVETKPE 282
>ref|XP_003357027.1| PREDICTED: ras GTPase-activating protein-binding protein 2 isoform
1 [Sus scrofa].
Length = 448
Score = 243 bits (621), Expect = 1e-64
Identities = 113/139 (81%), Positives = 129/139 (92%)
Frame = +3
Query: 141 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 320
MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
Query: 321 IHRKVMAQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 500
IH KV++ NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q R+FMQTFVLAPEGSV
Sbjct: 61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
Query: 501 ANKFYVHNDIFRYQDEVFG 557
NKFYVHND+FRY+DEVFG
Sbjct: 121 PNKFYVHNDMFRYEDEVFG 139
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,005,525
Number of extensions: 660403
Number of successful extensions: 2297
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2288
Number of HSP's successfully gapped: 6
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002318
(1128 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 404 e-110
Sscrofa_Chr08 68 1e-08
>Sscrofa_Chr16
|| Length = 86898991
Score = 404 bits (204), Expect = e-110
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 675 agcaatgacttagaagagcatttagaagaacctgttgctgaaccagagcctgatcctgaa 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77434483 agcaatgacttagaagagcatttagaagaacctgttgctgaaccagagcctgatcctgaa 77434424
Query: 735 ccagaaccagagcaagaacctgtatctgaagtccaggaggaaaagtctgagccagtattg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77434423 ccagaaccagagcaagaacctgtatctgaagtccaggaggaaaagtctgagccagtattg 77434364
Query: 795 gaagaagctgctcctgaggatgttcagaagagttcttctccagcgcctgcagacatagca 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77434363 gaagaagctgctcctgaggatgttcagaagagttcttctccagcgcctgcagacatagca 77434304
Query: 855 cagacagtacaggaggatttgaga 878
||||||||||||||||||||||||
Sbjct: 77434303 cagacagtacaggaggatttgaga 77434280
Score = 347 bits (175), Expect = 8e-93
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 318 gaaatccataggaaagtgatggctcagaacttcaccaactgccacaccaagatccgccat 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77439730 gaaatccataggaaagtgatggctcagaacttcaccaactgccacaccaagatccgccat 77439671
Query: 378 gtcgacgctcacgccaccctgaatgacggcgtggtggtccaggtgatgggcttgctctcg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77439670 gtcgacgctcacgccaccctgaatgacggcgtggtggtccaggtgatgggcttgctctcg 77439611
Query: 438 aacaacaaccaggctttgaggagattcatgcagacttttgtccttgctcctgagg 492
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77439610 aacaacaaccaggctttgaggagattcatgcagacttttgtccttgctcctgagg 77439556
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 gagtctcggttatatagcccggcgacggagcacgcgtgtgtgcggacgcagttgcgtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77475751 gagtctcggttatatagcccggcgacggagcacgcgtgtgtgcggacgcagttgcgtgaa 77475810
Query: 61 gggtatttgccttttgccttgcggtggagcagagcttgttcctctcccgttcagccgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77475811 gggtatttgccttttgccttgcggtggagcagagcttgttcctctcccgttcagccgtgc 77475870
Query: 121 aggt 124
||||
Sbjct: 77475871 aggt 77475874
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 120 caggttgaattgaccaaagcaatggttatggagaagcctagtcccctgctggtcgggcgg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77485366 caggttgaattgaccaaagcaatggttatggagaagcctagtcccctgctggtcgggcgg 77485425
Query: 180 gaatttgtgagacagtattacacgctgctgaaccaggccccagacatgctacacag 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77485426 gaatttgtgagacagtattacacgctgctgaaccaggccccagacatgctacacag 77485481
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 879 accttttcctgggcgtctgtgaccagtaagaaccttcctcccagtggagctgttccggtt 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77432326 accttttcctgggcgtctgtgaccagtaagaaccttcctcccagtggagctgttccggtt 77432267
Query: 939 accgggataccacctcatgttgttaaagtgccagcttcacag 980
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77432266 accgggataccacctcatgttgttaaagtgccagcttcacag 77432225
Score = 200 bits (101), Expect = 1e-48
Identities = 107/109 (98%)
Strand = Plus / Minus
Query: 978 cagcctcgtccagagactaaacctgaatctcagattccaccgcagaggcctcaaagggat 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 77431814 cagcctcgtccagagactaaacctgaatctcagattccaccgcagaggcctcagagggat 77431755
Query: 1038 caaagggttcgggaacagcgaataaatgttcctccccaaaggggtccta 1086
|||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 77431754 caaagggttcgggaacagcgaataaatgttcctccccagaggggtccta 77431706
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 582 gaatctgaagaagaagtagaggaacctgaagaaagacagcagacacctgaggtggtgcct 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77435738 gaatctgaagaagaagtagaggaacctgaagaaagacagcagacacctgaggtggtgcct 77435679
Query: 642 gatgattctggaactttctatgatcaaactgtcag 676
|||||||||||||||||||||||||||||||||||
Sbjct: 77435678 gatgattctggaactttctatgatcaaactgtcag 77435644
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 490 agggctctgttgcaaataaattctatgttcacaatgatatcttcagataccaagatgagg 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77436795 agggctctgttgcaaataaattctatgttcacaatgatatcttcagataccaagatgagg 77436736
Query: 550 tctttggtggctttgtcacggagcctcaggagg 582
|||||||||||||||||||||||||||||||||
Sbjct: 77436735 tctttggtggctttgtcacggagcctcaggagg 77436703
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 232 acagattttatggaaagaactcttcttatgtccatgggggattggattcaaatggaaagc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77440264 acagattttatggaaagaactcttcttatgtccatgggggattggattcaaatggaaagc 77440205
Query: 292 cagcagatgcagtctatggacaaaaag 318
|||||||||||||||||||||||||||
Sbjct: 77440204 cagcagatgcagtctatggacaaaaag 77440178
Score = 137 bits (69), Expect = 1e-29
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 164 cctgctggtcgggcgggaatttgtgagacagtattacacgctgctgaaccaggccccaga 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 77442846 cctgctggtcgggcgggaatttgtgagacagtattacacgctgctgaaccaggcnccaga 77442787
Query: 224 catgctacacag 235
||||||||||||
Sbjct: 77442786 catgctacacag 77442775
Score = 71.9 bits (36), Expect = 7e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 1093 tccgagaggctggtgagcaaggggatgttgagcctc 1128
||||||||||||||||||||||||||||||||||||
Sbjct: 77431482 tccgagaggctggtgagcaaggggatgttgagcctc 77431447
>Sscrofa_Chr08
|| Length = 148491826
Score = 67.9 bits (34), Expect = 1e-08
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 134 caaagcaatggttatggagaagcctagtcccctgctggtcgggcgggaatttgtgagaca 193
||||| |||||||||||||||||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 75428548 caaagaaatggttatggagaagcccagtccgctgcttgtagggcgggagtttgtgaggca 75428489
Query: 194 gtatta 199
|||||
Sbjct: 75428488 atatta 75428483
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,189,004
Number of extensions: 192
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 12
Length of query: 1128
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1107
Effective length of database: 2,808,413,156
Effective search space: 3108913363692
Effective search space used: 3108913363692
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)