Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002335
(1820 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106725.1| Wilms tumor 1 associated protein isoform 1 [... 613 e-175
Alignment gi|NP_001039806.1| Wilms tumor 1 associated protein isoform 2 [... 261 1e-69
>ref|NP_001106725.1| Wilms tumor 1 associated protein isoform 1 [Bos taurus].
Length = 396
Score = 613 bits (1581), Expect = e-175
Identities = 326/396 (82%), Positives = 330/396 (83%), Gaps = 1/396 (0%)
Frame = +2
Query: 77 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 256
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 257 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 436
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRS MVDPAINL
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSAMVDPAINLL 120
Query: 437 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 616
FLKMK ELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI
Sbjct: 121 FLKMKSELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 180
Query: 617 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRXXXXXXX 796
AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETR
Sbjct: 181 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ 240
Query: 797 XXXXXAPGPSTSR-TPSEPGGQAEATGKDCSRLANGPXXXXXXXXXXXXXXFHREGDTTE 973
A GPSTSR T SEP GQAEATGKDCSRLANGP FHREGDT E
Sbjct: 241 QQQSQAAGPSTSRTTSSEPVGQAEATGKDCSRLANGPSNGSSSRQRTSGSGFHREGDTAE 300
Query: 974 DDFPPSPGSGNKAXXXXXXXXXXXXXXYVNQLSAGYESVDSPTGSENSLTRHSHDTDSNP 1153
DDFP SPG+GNKA YVNQLSAGYESVDSPTGSENSLT HS+DTDS+
Sbjct: 301 DDFPSSPGNGNKASSSSEERTGRGGSSYVNQLSAGYESVDSPTGSENSLTHHSNDTDSSH 360
Query: 1154 DPQEEKTVSGKGSRTAGSRHVQNGLDSSVNVQGSVL 1261
DPQEEK VSGKG+RTA SRHVQNGLDSSVNVQGSVL
Sbjct: 361 DPQEEKPVSGKGNRTAASRHVQNGLDSSVNVQGSVL 396
>ref|NP_001039806.1| Wilms tumor 1 associated protein isoform 2 [Bos taurus].
Length = 151
Score = 261 bits (667), Expect = 1e-69
Identities = 134/150 (89%), Positives = 134/150 (89%)
Frame = +2
Query: 77 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 256
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 257 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 436
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRS MVDPAINL
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSAMVDPAINLL 120
Query: 437 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 526
FLKMK ELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKSELEQTKDKLEQAQNELSAWKFTPD 150
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,734,012
Number of extensions: 1421938
Number of successful extensions: 4957
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4937
Number of HSP's successfully gapped: 2
Length of query: 606
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 498
Effective length of database: 14,107,870
Effective search space: 7025719260
Effective search space used: 7025719260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002335
(1820 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533464.2| PREDICTED: similar to Wilms tumour 1-associatin... 626 e-179
Alignment gi|XP_849342.1| PREDICTED: similar to Wilms tumor 1-associating... 278 2e-74
Alignment gi|XP_849116.1| PREDICTED: similar to Wilms tumour 1-associatin... 244 3e-64
Alignment gi|XP_858471.1| PREDICTED: similar to Wilms tumour 1-associatin... 213 6e-55
Alignment gi|XP_539133.2| PREDICTED: similar to Wilms tumour 1-associatin... 126 8e-29
>ref|XP_533464.2| PREDICTED: similar to Wilms tumour 1-associating protein isoform 1
[Canis familiaris].
Length = 396
Score = 626 bits (1614), Expect = e-179
Identities = 331/396 (83%), Positives = 335/396 (84%), Gaps = 1/396 (0%)
Frame = +2
Query: 77 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 256
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 257 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 436
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 437 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 616
FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 180
Query: 617 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRXXXXXXX 796
AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETR
Sbjct: 181 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ 240
Query: 797 XXXXXAPGPSTSR-TPSEPGGQAEATGKDCSRLANGPXXXXXXXXXXXXXXFHREGDTTE 973
AP PSTSR T SEP GQAEATGKDCSRLANGP FHREGDT E
Sbjct: 241 QQQSQAPAPSTSRTTSSEPVGQAEATGKDCSRLANGPSNGSSSRQRTSGSGFHREGDTAE 300
Query: 974 DDFPPSPGSGNKAXXXXXXXXXXXXXXYVNQLSAGYESVDSPTGSENSLTRHSHDTDSNP 1153
DDFP SPG+GNKA YVNQLSAGYESVDSPTGSENSLT HS+DTDSN
Sbjct: 301 DDFPSSPGNGNKASNSSEERTGRGGSSYVNQLSAGYESVDSPTGSENSLTHHSNDTDSNH 360
Query: 1154 DPQEEKTVSGKGSRTAGSRHVQNGLDSSVNVQGSVL 1261
DPQEEKTVSGKG+RTAGSRHVQNGLDS+VNVQGSVL
Sbjct: 361 DPQEEKTVSGKGNRTAGSRHVQNGLDSNVNVQGSVL 396
>ref|XP_849342.1| PREDICTED: similar to Wilms tumor 1-associating protein
(WT1-associated protein) (Putative pre-mRNA splicing
regulator female-lethal(2D) homolog) isoform 1 [Canis
familiaris].
Length = 181
Score = 278 bits (710), Expect = 2e-74
Identities = 148/156 (94%), Positives = 149/156 (95%)
Frame = +2
Query: 308 MRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQ 487
MRLAT+EQEMQ TTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQ
Sbjct: 1 MRLATQEQEMQGSTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQ 60
Query: 488 AQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEEL 667
AQNELSAWKF PDSQTGKK MAKCRMLIQENQELGRQLSQG IAQLEAELALQKKYSEEL
Sbjct: 61 AQNELSAWKFMPDSQTGKKFMAKCRMLIQENQELGRQLSQGCIAQLEAELALQKKYSEEL 120
Query: 668 KSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETR 775
KSSQDELND IIQLD EVEGMQSTILVLQQQLKETR
Sbjct: 121 KSSQDELNDLIIQLD-EVEGMQSTILVLQQQLKETR 155
>ref|XP_849116.1| PREDICTED: similar to Wilms tumour 1-associating protein [Canis
familiaris].
Length = 216
Score = 244 bits (622), Expect = 3e-64
Identities = 128/156 (82%), Positives = 134/156 (85%)
Frame = +2
Query: 59 VRRGFKMTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTG 238
+R GFK+TNEEPLPKKVRLSETD KVMAR+E ILRWKQYEAYVQALEGKYTDLNSND G
Sbjct: 44 LRLGFKVTNEEPLPKKVRLSETDIKVMAREEFILRWKQYEAYVQALEGKYTDLNSND--G 101
Query: 239 LRXXXXXXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVD 418
LR ARRE+ILVMRL TKEQE+QECTTQIQY KQVQQP+VAQLRSTMVD
Sbjct: 102 LRESEEKLKQQQES-ARRESILVMRLETKEQEVQECTTQIQYFKQVQQPNVAQLRSTMVD 160
Query: 419 PAINLFFLKMKGELEQTKDKLEQAQNELSAWKFTPD 526
PAINLFFLKMKGELEQTKD LEQAQNELSAWKF PD
Sbjct: 161 PAINLFFLKMKGELEQTKDNLEQAQNELSAWKFMPD 196
>ref|XP_858471.1| PREDICTED: similar to Wilms tumour 1-associating protein isoform 2
[Canis familiaris].
Length = 150
Score = 213 bits (541), Expect = 6e-55
Identities = 110/130 (84%), Positives = 112/130 (86%)
Frame = +2
Query: 137 MARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXXXXXXXXXXXARRENILVMRL 316
MARDELILRWKQYEAYVQA EG+YTDLNSND TGLR ARRENILVMRL
Sbjct: 1 MARDELILRWKQYEAYVQAWEGEYTDLNSNDATGLRESEEKLKQQQQESARRENILVMRL 60
Query: 317 ATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN 496
AT+EQEMQ TTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN
Sbjct: 61 ATQEQEMQGSTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN 120
Query: 497 ELSAWKFTPD 526
ELSAWKF PD
Sbjct: 121 ELSAWKFMPD 130
>ref|XP_539133.2| PREDICTED: similar to Wilms tumour 1-associating protein [Canis
familiaris].
Length = 84
Score = 126 bits (316), Expect = 8e-29
Identities = 61/64 (95%), Positives = 63/64 (98%)
Frame = +2
Query: 335 MQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQNELSAWK 514
MQECTTQIQYLKQVQQPS+AQ+RSTMVD AINLFFLKMKGELEQTKDKLEQAQNELSAWK
Sbjct: 1 MQECTTQIQYLKQVQQPSIAQMRSTMVDRAINLFFLKMKGELEQTKDKLEQAQNELSAWK 60
Query: 515 FTPD 526
FTPD
Sbjct: 61 FTPD 64
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,271,752
Number of extensions: 1450560
Number of successful extensions: 5379
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5331
Number of HSP's successfully gapped: 5
Length of query: 606
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 497
Effective length of database: 15,240,880
Effective search space: 7574717360
Effective search space used: 7574717360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002335
(1820 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004897.2| pre-mRNA-splicing regulator WTAP isoform 1 [Hom... 606 e-173
Alignment gi|NP_690597.1| pre-mRNA-splicing regulator WTAP isoform 2 [Hom... 268 2e-71
Alignment gi|NP_690596.1| pre-mRNA-splicing regulator WTAP isoform 2 [Hom... 268 2e-71
>ref|NP_004897.2| pre-mRNA-splicing regulator WTAP isoform 1 [Homo sapiens].
Length = 396
Score = 606 bits (1563), Expect = e-173
Identities = 322/396 (81%), Positives = 329/396 (83%), Gaps = 1/396 (0%)
Frame = +2
Query: 77 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 256
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 257 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 436
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 437 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 616
FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 180
Query: 617 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRXXXXXXX 796
AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETR
Sbjct: 181 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ 240
Query: 797 XXXXXAPGPSTSR-TPSEPGGQAEATGKDCSRLANGPXXXXXXXXXXXXXXFHREGDTTE 973
A PSTSR T SEP Q+EAT KDCSRL NGP FHREG+TTE
Sbjct: 241 QQQSQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNGSSSRQRTSGSGFHREGNTTE 300
Query: 974 DDFPPSPGSGNKAXXXXXXXXXXXXXXYVNQLSAGYESVDSPTGSENSLTRHSHDTDSNP 1153
DDFP SPG+GNK+ YVNQLSAGYESVDSPTGSENSLT S+DTDS+
Sbjct: 301 DDFPSSPGNGNKSSNSSEERTGRGGSGYVNQLSAGYESVDSPTGSENSLTHQSNDTDSSH 360
Query: 1154 DPQEEKTVSGKGSRTAGSRHVQNGLDSSVNVQGSVL 1261
DPQEEK VSGKG+RT GSRHVQNGLDSSVNVQGSVL
Sbjct: 361 DPQEEKAVSGKGNRTVGSRHVQNGLDSSVNVQGSVL 396
>ref|NP_690597.1| pre-mRNA-splicing regulator WTAP isoform 2 [Homo sapiens].
Length = 151
Score = 268 bits (684), Expect = 2e-71
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +2
Query: 77 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 256
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 257 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 436
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 437 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 526
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
>ref|NP_690596.1| pre-mRNA-splicing regulator WTAP isoform 2 [Homo sapiens].
Length = 151
Score = 268 bits (684), Expect = 2e-71
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +2
Query: 77 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 256
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 257 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 436
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 437 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 526
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,270,982
Number of extensions: 1429135
Number of successful extensions: 5165
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5145
Number of HSP's successfully gapped: 3
Length of query: 606
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 498
Effective length of database: 14,737,052
Effective search space: 7339051896
Effective search space used: 7339051896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002335
(1820 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001107005.1| pre-mRNA-splicing regulator WTAP isoform a [... 601 e-172
Alignment gi|NP_001107004.1| pre-mRNA-splicing regulator WTAP isoform b [... 268 1e-71
Alignment gi|NP_780603.1| pre-mRNA-splicing regulator WTAP isoform b [Mus... 268 1e-71
>ref|NP_001107005.1| pre-mRNA-splicing regulator WTAP isoform a [Mus musculus].
Length = 396
Score = 601 bits (1550), Expect = e-172
Identities = 319/396 (80%), Positives = 326/396 (82%), Gaps = 1/396 (0%)
Frame = +2
Query: 77 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 256
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 257 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 436
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 437 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 616
FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 180
Query: 617 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRXXXXXXX 796
AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETR
Sbjct: 181 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ 240
Query: 797 XXXXXAPGPSTSR-TPSEPGGQAEATGKDCSRLANGPXXXXXXXXXXXXXXFHREGDTTE 973
A PSTSR T SEP QAE T KDCSRLANGP FHREG T E
Sbjct: 241 QQQSQASAPSTSRTTSSEPVDQAEVTSKDCSRLANGPSNGSSSRQRTSGSGFHREGSTPE 300
Query: 974 DDFPPSPGSGNKAXXXXXXXXXXXXXXYVNQLSAGYESVDSPTGSENSLTRHSHDTDSNP 1153
DDFP S G+GNKA Y+N LSAGYESVDSPTGSENSLT HS+DTDS+
Sbjct: 301 DDFPSSSGNGNKASNSSEERTGRGGSSYINPLSAGYESVDSPTGSENSLTHHSNDTDSSH 360
Query: 1154 DPQEEKTVSGKGSRTAGSRHVQNGLDSSVNVQGSVL 1261
DPQEEK VSGKG+RT GSRHVQNGLDS+VNVQG+VL
Sbjct: 361 DPQEEKAVSGKGNRTVGSRHVQNGLDSNVNVQGAVL 396
>ref|NP_001107004.1| pre-mRNA-splicing regulator WTAP isoform b [Mus musculus].
Length = 151
Score = 268 bits (684), Expect = 1e-71
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +2
Query: 77 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 256
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 257 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 436
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 437 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 526
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
>ref|NP_780603.1| pre-mRNA-splicing regulator WTAP isoform b [Mus musculus].
Length = 151
Score = 268 bits (684), Expect = 1e-71
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +2
Query: 77 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 256
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 257 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 436
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 437 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 526
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,180,118
Number of extensions: 1211456
Number of successful extensions: 4264
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4235
Number of HSP's successfully gapped: 3
Length of query: 606
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 499
Effective length of database: 12,403,707
Effective search space: 6189449793
Effective search space used: 6189449793
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002335
(1820 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353211.1| PREDICTED: pre-mRNA-splicing regulator WTAP-... 392 e-109
Alignment gi|XP_003121158.2| PREDICTED: pre-mRNA-splicing regulator WTAP ... 268 1e-71
Alignment gi|XP_001928418.2| PREDICTED: pre-mRNA-splicing regulator WTAP ... 268 1e-71
>ref|XP_003353211.1| PREDICTED: pre-mRNA-splicing regulator WTAP-like [Sus scrofa].
Length = 252
Score = 392 bits (1008), Expect = e-109
Identities = 205/245 (83%), Positives = 205/245 (83%)
Frame = +2
Query: 527 SQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQ 706
SQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQ
Sbjct: 8 SQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQ 67
Query: 707 LDEEVEGMQSTILVLQQQLKETRXXXXXXXXXXXXAPGPSTSRTPSEPGGQAEATGKDCS 886
LDEEVEGMQSTILVLQQQLKETR APGPSTSRTPSEPGGQAEATGKDCS
Sbjct: 68 LDEEVEGMQSTILVLQQQLKETRQQLAQYQQQQSQAPGPSTSRTPSEPGGQAEATGKDCS 127
Query: 887 RLANGPXXXXXXXXXXXXXXFHREGDTTEDDFPPSPGSGNKAXXXXXXXXXXXXXXYVNQ 1066
RLANGP FHREGDTTEDDFPPSPGSGNKA YVNQ
Sbjct: 128 RLANGPSNGSSSRQRTSGSGFHREGDTTEDDFPPSPGSGNKASNSSEERTGRGGSSYVNQ 187
Query: 1067 LSAGYESVDSPTGSENSLTRHSHDTDSNPDPQEEKTVSGKGSRTAGSRHVQNGLDSSVNV 1246
LSAGYESVDSPTGSENSLTRHSHDTDSNPDPQEEKTVSGKGSRTAGSRHVQNGLDSSVNV
Sbjct: 188 LSAGYESVDSPTGSENSLTRHSHDTDSNPDPQEEKTVSGKGSRTAGSRHVQNGLDSSVNV 247
Query: 1247 QGSVL 1261
QGSVL
Sbjct: 248 QGSVL 252
>ref|XP_003121158.2| PREDICTED: pre-mRNA-splicing regulator WTAP isoform 2 [Sus scrofa].
Length = 151
Score = 268 bits (684), Expect = 1e-71
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +2
Query: 77 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 256
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 257 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 436
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 437 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 526
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
>ref|XP_001928418.2| PREDICTED: pre-mRNA-splicing regulator WTAP isoform 1 [Sus scrofa].
Length = 151
Score = 268 bits (684), Expect = 1e-71
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +2
Query: 77 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 256
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 257 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 436
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 437 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 526
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,614,319
Number of extensions: 941539
Number of successful extensions: 3230
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3215
Number of HSP's successfully gapped: 3
Length of query: 606
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 501
Effective length of database: 8,729,747
Effective search space: 4373603247
Effective search space used: 4373603247
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002335
(1820 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1150 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1150 bits (580), Expect = 0.0
Identities = 580/580 (100%)
Strand = Plus / Minus
Query: 683 gaactgaatgacttcatcattcaacttgacgaagaagtagagggtatgcagagtaccatt 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9421155 gaactgaatgacttcatcattcaacttgacgaagaagtagagggtatgcagagtaccatt 9421096
Query: 743 ctagtccttcaacagcagctgaaggagacccgccagcagctggctcagtaccaacagcag 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9421095 ctagtccttcaacagcagctgaaggagacccgccagcagctggctcagtaccaacagcag 9421036
Query: 803 cagtctcaagccccaggcccgagcaccagcaggactccgtctgagcctggaggacaggca 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9421035 cagtctcaagccccaggcccgagcaccagcaggactccgtctgagcctggaggacaggca 9420976
Query: 863 gaggccacagggaaagactgcagtcgtctggccaacggaccaagtaatggcagctcctcc 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420975 gaggccacagggaaagactgcagtcgtctggccaacggaccaagtaatggcagctcctcc 9420916
Query: 923 cggcagaggacgtctgggtctgggtttcacagggagggcgacacgaccgaagatgacttt 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420915 cggcagaggacgtctgggtctgggtttcacagggagggcgacacgaccgaagatgacttt 9420856
Query: 983 cctccttctccggggagcgggaataaggcctccaacagctcagaggagagaactggcaga 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420855 cctccttctccggggagcgggaataaggcctccaacagctcagaggagagaactggcaga 9420796
Query: 1043 ggaggtagtagttacgtaaaccaactcagtgctgggtatgaaagcgtagactctcccacg 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420795 ggaggtagtagttacgtaaaccaactcagtgctgggtatgaaagcgtagactctcccacg 9420736
Query: 1103 ggcagtgaaaactctctcacacgccactcacatgacacagactccaaccctgaccctcaa 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420735 ggcagtgaaaactctctcacacgccactcacatgacacagactccaaccctgaccctcaa 9420676
Query: 1163 gaggagaaaaccgtgagtgggaaaggtagccgaactgcgggttcccgccacgtccagaat 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420675 gaggagaaaaccgtgagtgggaaaggtagccgaactgcgggttcccgccacgtccagaat 9420616
Query: 1223 ggcttggactcaagtgtaaatgtacagggttcggttttgt 1262
||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420615 ggcttggactcaagtgtaaatgtacagggttcggttttgt 9420576
Score = 759 bits (383), Expect = 0.0
Identities = 395/399 (98%)
Strand = Plus / Minus
Query: 1422 ccttcgacttttctttctttgctttaagacctctgccacttgggaaattgtaacagttaa 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420416 ccttcgacttttctttctttgctttaagacctctgccacttgggaaattgtaacagttaa 9420357
Query: 1482 ttactttgaatgttgctaaaaggacattttgtgtagggtcaggttatttttatatgagtt 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420356 ttactttgaatgttgctaaaaggacattttgtgtagggtcaggttatttttatatgagtt 9420297
Query: 1542 aatgtgaagttgtaaatggaaatctttccttaaagtataacatactgatgtctgtataaa 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420296 aatgtgaagttgtaaatggaaatctttccttaaagtataacatactgatgtctgtataaa 9420237
Query: 1602 tctgtgtctaccctagaagctgtgctgtggaaggcgttcttactcatgctgttactgtac 1661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420236 tctgtgtctaccctagaagctgtgctgtggaaggcgttcttactcatgctgttactgtac 9420177
Query: 1662 ttctgcaccattccagacgtgttagcgtagatgtgggtttatgactgccgagtttgccca 1721
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420176 ttctgcaccatttcagacgtgttagcgtagatgtgggtttatgactgccgagtttgccca 9420117
Query: 1722 gtacagtagttttatcactaaaagttggactttgtgatgcagtcctatagtagtttcagt 1781
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 9420116 gtacagtagttttatcactaaaagttggacttgttgatgcagtcctatagtagtttcagt 9420057
Query: 1782 gttagatacagttttttcccctatacatctgtgcatttt 1820
||||||||||||||||||| |||||||||||||||||||
Sbjct: 9420056 gttagatacagttttttccactatacatctgtgcatttt 9420018
Score = 355 bits (179), Expect = 5e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 350 actcaaatccagtacctcaagcaagtccagcagcctagcgttgcccaactgagatcaaca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9428077 actcaaatccagtacctcaagcaagtccagcagcctagcgttgcccaactgagatcaaca 9428018
Query: 410 atggtcgacccagcgatcaacttgtttttcctaaaaatgaaaggtgaactggaacagact 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9428017 atggtcgacccagcgatcaacttgtttttcctaaaaatgaaaggtgaactggaacagact 9427958
Query: 470 aaagacaaactggaacaagcccaaaatgaactgagtgcctggaagtttacgcctgatag 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9427957 aaagacaaactggaacaagcccaaaatgaactgagtgcctggaagtttacgcctgatag 9427899
Score = 311 bits (157), Expect = 7e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 527 agccaaacaggcaaaaagttaatggcgaagtgtcgaatgcttatccaggagaatcaagag 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9422245 agccaaacaggcaaaaagttaatggcgaagtgtcgaatgcttatccaggagaatcaagag 9422186
Query: 587 cttggaaggcagctgtcccagggacgtattgcacaacttgaagcagagttggctttacag 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9422185 cttggaaggcagctgtcccagggacgtattgcacaacttgaagcagagttggctttacag 9422126
Query: 647 aagaaatatagtgaggagcttaaaagcagtcaggatg 683
|||||||||||||||||||||||||||||||||||||
Sbjct: 9422125 aagaaatatagtgaggagcttaaaagcagtcaggatg 9422089
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 222 ctaatgatgtaactggcttaagggagtctgaagaaaaactaaagcaacaacagcaagaat 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9432633 ctaatgatgtaactggcttaagggagtctgaagaaaaactaaagcaacaacagcaagaat 9432574
Query: 282 ctgcacgcagggaaaacatccttgtaatgcgcctagcaaccaaggagcaagagatgcaag 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9432573 ctgcacgcagggaaaacatccttgtaatgcgcctagcaaccaaggagcaagagatgcaag 9432514
Query: 342 agtgtact 349
||||||||
Sbjct: 9432513 agtgtact 9432506
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 1291 ttcccagcaaatttttatacagtgtcatttaatttgggagaggatattgtccagaaaatt 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420547 ttcccagcaaatttttatacagtgtcatttaatttgggagaggatattgtccagaaaatt 9420488
Query: 1351 aatgcattcttttgtcacaattagcc 1376
||||||||||||||||||||||||||
Sbjct: 9420487 aatgcattcttttgtcacaattagcc 9420462
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 161 aggtggaaacaatacgaagcatacgtgcaagctttggagggcaagtacacagatcttaac 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9433970 aggtggaaacaatacgaagcatacgtgcaagctttggagggcaagtacacagatcttaac 9433911
Query: 221 t 221
|
Sbjct: 9433910 t 9433910
Score = 119 bits (60), Expect = 6e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 105 aggttcgactgagtgagacagacttcaaagttatggcacgagacgaattgattctaaggt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9437450 aggttcgactgagtgagacagacttcaaagttatggcacgagacgaattgattctaaggt 9437391
Score = 97.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 1 gcgccattttgtggcagcgagacccgcaaataaaggggagcgccagggc 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9447342 gcgccattttgtggcagcgagacccgcaaataaaggggagcgccagggc 9447294
Score = 85.7 bits (43), Expect = 8e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 67 aggattcaagatgaccaacgaggaacctcttcccaaaaaggtt 109
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9440205 aggattcaagatgaccaacgaggaacctcttcccaaaaaggtt 9440163
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 53,609,880
Number of extensions: 358
Number of successful extensions: 358
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 10
Length of query: 1820
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1798
Effective length of database: 2,808,408,574
Effective search space: 5049518616052
Effective search space used: 5049518616052
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)