Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002336
(926 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039806.1| Wilms tumor 1 associated protein isoform 2 [... 263 2e-70
Alignment gi|NP_001106725.1| Wilms tumor 1 associated protein isoform 1 [... 261 6e-70
>ref|NP_001039806.1| Wilms tumor 1 associated protein isoform 2 [Bos taurus].
Length = 151
Score = 263 bits (672), Expect = 2e-70
Identities = 135/151 (89%), Positives = 135/151 (89%)
Frame = +3
Query: 177 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 356
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 357 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 536
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRS MVDPAINL
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSAMVDPAINLL 120
Query: 537 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 629
FLKMK ELEQTKDKLEQAQNELSAWKFTPDR
Sbjct: 121 FLKMKSELEQTKDKLEQAQNELSAWKFTPDR 151
>ref|NP_001106725.1| Wilms tumor 1 associated protein isoform 1 [Bos taurus].
Length = 396
Score = 261 bits (667), Expect = 6e-70
Identities = 134/150 (89%), Positives = 134/150 (89%)
Frame = +3
Query: 177 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 356
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 357 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 536
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRS MVDPAINL
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSAMVDPAINLL 120
Query: 537 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 626
FLKMK ELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKSELEQTKDKLEQAQNELSAWKFTPD 150
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,911,887
Number of extensions: 657326
Number of successful extensions: 1587
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1587
Number of HSP's successfully gapped: 2
Length of query: 308
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 206
Effective length of database: 14,306,398
Effective search space: 2947117988
Effective search space used: 2947117988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002336
(926 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533464.2| PREDICTED: similar to Wilms tumour 1-associatin... 268 7e-72
Alignment gi|XP_849116.1| PREDICTED: similar to Wilms tumour 1-associatin... 248 8e-66
Alignment gi|XP_858471.1| PREDICTED: similar to Wilms tumour 1-associatin... 214 7e-56
Alignment gi|XP_849342.1| PREDICTED: similar to Wilms tumor 1-associating... 137 2e-32
Alignment gi|XP_539133.2| PREDICTED: similar to Wilms tumour 1-associatin... 128 9e-30
>ref|XP_533464.2| PREDICTED: similar to Wilms tumour 1-associating protein isoform 1
[Canis familiaris].
Length = 396
Score = 268 bits (684), Expect = 7e-72
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +3
Query: 177 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 356
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 357 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 536
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 537 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 626
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
>ref|XP_849116.1| PREDICTED: similar to Wilms tumour 1-associating protein [Canis
familiaris].
Length = 216
Score = 248 bits (632), Expect = 8e-66
Identities = 130/161 (80%), Positives = 136/161 (84%)
Frame = +3
Query: 147 RAASVRRGFKMTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSN 326
R +R GFK+TNEEPLPKKVRLSETD KVMAR+E ILRWKQYEAYVQALEGKYTDLNSN
Sbjct: 40 RTCGLRLGFKVTNEEPLPKKVRLSETDIKVMAREEFILRWKQYEAYVQALEGKYTDLNSN 99
Query: 327 DVTGLRXXXXXXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRS 506
D GLR ARRE+ILVMRL TKEQE+QECTTQIQY KQVQQP+VAQLRS
Sbjct: 100 D--GLRESEEKLKQQQES-ARRESILVMRLETKEQEVQECTTQIQYFKQVQQPNVAQLRS 156
Query: 507 TMVDPAINLFFLKMKGELEQTKDKLEQAQNELSAWKFTPDR 629
TMVDPAINLFFLKMKGELEQTKD LEQAQNELSAWKF PDR
Sbjct: 157 TMVDPAINLFFLKMKGELEQTKDNLEQAQNELSAWKFMPDR 197
>ref|XP_858471.1| PREDICTED: similar to Wilms tumour 1-associating protein isoform 2
[Canis familiaris].
Length = 150
Score = 214 bits (546), Expect = 7e-56
Identities = 111/131 (84%), Positives = 113/131 (86%)
Frame = +3
Query: 237 MARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXXXXXXXXXXXARRENILVMRL 416
MARDELILRWKQYEAYVQA EG+YTDLNSND TGLR ARRENILVMRL
Sbjct: 1 MARDELILRWKQYEAYVQAWEGEYTDLNSNDATGLRESEEKLKQQQQESARRENILVMRL 60
Query: 417 ATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN 596
AT+EQEMQ TTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN
Sbjct: 61 ATQEQEMQGSTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN 120
Query: 597 ELSAWKFTPDR 629
ELSAWKF PDR
Sbjct: 121 ELSAWKFMPDR 131
>ref|XP_849342.1| PREDICTED: similar to Wilms tumor 1-associating protein
(WT1-associated protein) (Putative pre-mRNA splicing
regulator female-lethal(2D) homolog) isoform 1 [Canis
familiaris].
Length = 181
Score = 137 bits (344), Expect = 2e-32
Identities = 69/73 (94%), Positives = 70/73 (95%)
Frame = +3
Query: 408 MRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQ 587
MRLAT+EQEMQ TTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQ
Sbjct: 1 MRLATQEQEMQGSTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQ 60
Query: 588 AQNELSAWKFTPD 626
AQNELSAWKF PD
Sbjct: 61 AQNELSAWKFMPD 73
>ref|XP_539133.2| PREDICTED: similar to Wilms tumour 1-associating protein [Canis
familiaris].
Length = 84
Score = 128 bits (321), Expect = 9e-30
Identities = 62/65 (95%), Positives = 64/65 (98%)
Frame = +3
Query: 435 MQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQNELSAWK 614
MQECTTQIQYLKQVQQPS+AQ+RSTMVD AINLFFLKMKGELEQTKDKLEQAQNELSAWK
Sbjct: 1 MQECTTQIQYLKQVQQPSIAQMRSTMVDRAINLFFLKMKGELEQTKDKLEQAQNELSAWK 60
Query: 615 FTPDR 629
FTPDR
Sbjct: 61 FTPDR 65
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,013,297
Number of extensions: 630257
Number of successful extensions: 1573
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1572
Number of HSP's successfully gapped: 5
Length of query: 308
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 206
Effective length of database: 15,474,232
Effective search space: 3187691792
Effective search space used: 3187691792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002336
(926 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_690597.1| pre-mRNA-splicing regulator WTAP isoform 2 [Hom... 270 2e-72
Alignment gi|NP_690596.1| pre-mRNA-splicing regulator WTAP isoform 2 [Hom... 270 2e-72
Alignment gi|NP_004897.2| pre-mRNA-splicing regulator WTAP isoform 1 [Hom... 268 7e-72
>ref|NP_690597.1| pre-mRNA-splicing regulator WTAP isoform 2 [Homo sapiens].
Length = 151
Score = 270 bits (689), Expect = 2e-72
Identities = 138/151 (91%), Positives = 138/151 (91%)
Frame = +3
Query: 177 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 356
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 357 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 536
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 537 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 629
FLKMKGELEQTKDKLEQAQNELSAWKFTPDR
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 151
>ref|NP_690596.1| pre-mRNA-splicing regulator WTAP isoform 2 [Homo sapiens].
Length = 151
Score = 270 bits (689), Expect = 2e-72
Identities = 138/151 (91%), Positives = 138/151 (91%)
Frame = +3
Query: 177 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 356
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 357 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 536
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 537 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 629
FLKMKGELEQTKDKLEQAQNELSAWKFTPDR
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 151
>ref|NP_004897.2| pre-mRNA-splicing regulator WTAP isoform 1 [Homo sapiens].
Length = 396
Score = 268 bits (684), Expect = 7e-72
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +3
Query: 177 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 356
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 357 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 536
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 537 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 626
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,397,141
Number of extensions: 615091
Number of successful extensions: 1593
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1593
Number of HSP's successfully gapped: 3
Length of query: 308
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 206
Effective length of database: 14,934,836
Effective search space: 3076576216
Effective search space used: 3076576216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002336
(926 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001107004.1| pre-mRNA-splicing regulator WTAP isoform b [... 270 2e-72
Alignment gi|NP_780603.1| pre-mRNA-splicing regulator WTAP isoform b [Mus... 270 2e-72
Alignment gi|NP_001107005.1| pre-mRNA-splicing regulator WTAP isoform a [... 268 6e-72
>ref|NP_001107004.1| pre-mRNA-splicing regulator WTAP isoform b [Mus musculus].
Length = 151
Score = 270 bits (689), Expect = 2e-72
Identities = 138/151 (91%), Positives = 138/151 (91%)
Frame = +3
Query: 177 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 356
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 357 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 536
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 537 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 629
FLKMKGELEQTKDKLEQAQNELSAWKFTPDR
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 151
>ref|NP_780603.1| pre-mRNA-splicing regulator WTAP isoform b [Mus musculus].
Length = 151
Score = 270 bits (689), Expect = 2e-72
Identities = 138/151 (91%), Positives = 138/151 (91%)
Frame = +3
Query: 177 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 356
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 357 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 536
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 537 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 629
FLKMKGELEQTKDKLEQAQNELSAWKFTPDR
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 151
>ref|NP_001107005.1| pre-mRNA-splicing regulator WTAP isoform a [Mus musculus].
Length = 396
Score = 268 bits (684), Expect = 6e-72
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +3
Query: 177 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 356
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 357 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 536
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 537 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 626
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,969,751
Number of extensions: 522770
Number of successful extensions: 1291
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1291
Number of HSP's successfully gapped: 3
Length of query: 308
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 207
Effective length of database: 12,583,923
Effective search space: 2604872061
Effective search space used: 2604872061
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002336
(926 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121158.2| PREDICTED: pre-mRNA-splicing regulator WTAP ... 270 1e-72
Alignment gi|XP_001928418.2| PREDICTED: pre-mRNA-splicing regulator WTAP ... 270 1e-72
>ref|XP_003121158.2| PREDICTED: pre-mRNA-splicing regulator WTAP isoform 2 [Sus scrofa].
Length = 151
Score = 270 bits (689), Expect = 1e-72
Identities = 138/151 (91%), Positives = 138/151 (91%)
Frame = +3
Query: 177 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 356
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 357 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 536
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 537 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 629
FLKMKGELEQTKDKLEQAQNELSAWKFTPDR
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 151
>ref|XP_001928418.2| PREDICTED: pre-mRNA-splicing regulator WTAP isoform 1 [Sus scrofa].
Length = 151
Score = 270 bits (689), Expect = 1e-72
Identities = 138/151 (91%), Positives = 138/151 (91%)
Frame = +3
Query: 177 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 356
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 357 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 536
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 537 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 629
FLKMKGELEQTKDKLEQAQNELSAWKFTPDR
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 151
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,106,618
Number of extensions: 500134
Number of successful extensions: 979
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 977
Number of HSP's successfully gapped: 2
Length of query: 308
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 209
Effective length of database: 8,879,129
Effective search space: 1855737961
Effective search space used: 1855737961
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002336
(926 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 922 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 922 bits (465), Expect = 0.0
Identities = 474/477 (99%)
Strand = Plus / Minus
Query: 450 actcaaatccagtacctcaagcaagtccagcagcctagcgttgcccaactgagatcaaca 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9428077 actcaaatccagtacctcaagcaagtccagcagcctagcgttgcccaactgagatcaaca 9428018
Query: 510 atggtcgacccagcgatcaacttgtttttcctaaaaatgaaaggtgaactggaacagact 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9428017 atggtcgacccagcgatcaacttgtttttcctaaaaatgaaaggtgaactggaacagact 9427958
Query: 570 aaagacaaactggaacaagcccaaaatgaactgagtgcctggaagtttacgcctgatagg 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9427957 aaagacaaactggaacaagcccaaaatgaactgagtgcctggaagtttacgcctgatagg 9427898
Query: 630 taaacaaatcatactccccagtcaagacttccctgacagtcccactgcgagaaagctgtg 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9427897 taaacaaatcatactccccagtcaagacttccctgacagtcccactgcgagaaagctgtg 9427838
Query: 690 gtgggacagccacgtactcgtttccacaccaagactcagactttttgagccaaaaaagcc 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9427837 gtgggacagccacgtactcgtttccacaccaagactcagactttttgagccaaaaaagcc 9427778
Query: 750 acattcttatactatccagcttgttatggttaatgtaaaacttaccagatgaaccttgtg 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9427777 acattcttatactatccagcttgttatggttaatgtaaaacttaccagatgaaccttgtg 9427718
Query: 810 tttcagcttttttctcttccccctccccttgcttcagaggcctgatggcgtccgactatt 869
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 9427717 tttcagctttttcctcttccccctccccttgcttcagaggcctgatggcgtcggactatt 9427658
Query: 870 ccgaagaagtggccccctccgaaaaattccccttctagaacattagacacttgagaa 926
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9427657 ccgaagaagtggccacctccgaaaaattccccttctagaacattagacacttgagaa 9427601
Score = 246 bits (124), Expect = 2e-62
Identities = 127/128 (99%)
Strand = Plus / Minus
Query: 322 ctaatgatgtaactggcttaagggagtctgaagaaaaactaaagcagcaacagcaagaat 381
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 9432633 ctaatgatgtaactggcttaagggagtctgaagaaaaactaaagcaacaacagcaagaat 9432574
Query: 382 ctgcacgcagggaaaacatccttgtaatgcgcctagcaaccaaggagcaagagatgcaag 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9432573 ctgcacgcagggaaaacatccttgtaatgcgcctagcaaccaaggagcaagagatgcaag 9432514
Query: 442 agtgtact 449
||||||||
Sbjct: 9432513 agtgtact 9432506
Score = 121 bits (61), Expect = 7e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 261 aggtggaaacaatacgaagcatacgtgcaagctttggagggcaagtacacagatcttaac 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9433970 aggtggaaacaatacgaagcatacgtgcaagctttggagggcaagtacacagatcttaac 9433911
Query: 321 t 321
|
Sbjct: 9433910 t 9433910
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 205 aggttcgactgagtgagacagacttcaaagttatggcacgagacgaattgattctaaggt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9437450 aggttcgactgagtgagacagacttcaaagttatggcacgagacgaattgattctaaggt 9437391
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 1 gccattttgtggcagcgagacccgcaaataaaggggagcgccagggctgcggcgggagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9447340 gccattttgtggcagcgagacccgcaaataaaggggagcgccagggctgcggcgggagga 9447281
Score = 95.6 bits (48), Expect = 4e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 122 tcggcctatgtgactgggcggcgcccgcgcggcctccgtccggagagg 169
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9447219 tcggcctatgtgactgggcggcgcccgcgcggcctccgtccggagagg 9447172
Score = 85.7 bits (43), Expect = 4e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 167 aggattcaagatgaccaacgaggaacctcttcccaaaaaggtt 209
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9440205 aggattcaagatgaccaacgaggaacctcttcccaaaaaggtt 9440163
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,991,328
Number of extensions: 168
Number of successful extensions: 168
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 7
Length of query: 926
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 905
Effective length of database: 2,808,413,156
Effective search space: 2541613906180
Effective search space used: 2541613906180
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)