Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002337
(1166 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106725.1| Wilms tumor 1 associated protein isoform 1 [... 526 e-149
Alignment gi|NP_001039806.1| Wilms tumor 1 associated protein isoform 2 [... 261 8e-70
>ref|NP_001106725.1| Wilms tumor 1 associated protein isoform 1 [Bos taurus].
Length = 396
Score = 526 bits (1354), Expect = e-149
Identities = 277/320 (86%), Positives = 281/320 (87%), Gaps = 1/320 (0%)
Frame = +1
Query: 175 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 354
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 355 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 534
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRS MVDPAINL
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSAMVDPAINLL 120
Query: 535 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 714
FLKMK ELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI
Sbjct: 121 FLKMKSELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 180
Query: 715 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRXXXXXXX 894
AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETR
Sbjct: 181 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ 240
Query: 895 XXXXXAPGPSTSR-TPSEPGGQAKATGKDCSRLANGPSNGSSSRQKTSGSGFHREGDTTE 1071
A GPSTSR T SEP GQA+ATGKDCSRLANGPSNGSSSRQ+TSGSGFHREGDT E
Sbjct: 241 QQQSQAAGPSTSRTTSSEPVGQAEATGKDCSRLANGPSNGSSSRQRTSGSGFHREGDTAE 300
Query: 1072 DDFPLSRGTGNKASTPPRKR 1131
DDFP S G GNKAS+ +R
Sbjct: 301 DDFPSSPGNGNKASSSSEER 320
>ref|NP_001039806.1| Wilms tumor 1 associated protein isoform 2 [Bos taurus].
Length = 151
Score = 261 bits (667), Expect = 8e-70
Identities = 134/150 (89%), Positives = 134/150 (89%)
Frame = +1
Query: 175 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 354
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 355 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 534
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRS MVDPAINL
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSAMVDPAINLL 120
Query: 535 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 624
FLKMK ELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKSELEQTKDKLEQAQNELSAWKFTPD 150
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,779,479
Number of extensions: 960777
Number of successful extensions: 4198
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4176
Number of HSP's successfully gapped: 2
Length of query: 388
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,240,222
Effective search space: 4044223048
Effective search space used: 4044223048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002337
(1166 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533464.2| PREDICTED: similar to Wilms tumour 1-associatin... 533 e-151
Alignment gi|XP_849342.1| PREDICTED: similar to Wilms tumor 1-associating... 278 9e-75
Alignment gi|XP_849116.1| PREDICTED: similar to Wilms tumour 1-associatin... 246 4e-65
Alignment gi|XP_858471.1| PREDICTED: similar to Wilms tumour 1-associatin... 213 4e-55
Alignment gi|XP_539133.2| PREDICTED: similar to Wilms tumour 1-associatin... 126 5e-29
>ref|XP_533464.2| PREDICTED: similar to Wilms tumour 1-associating protein isoform 1
[Canis familiaris].
Length = 396
Score = 533 bits (1372), Expect = e-151
Identities = 280/320 (87%), Positives = 283/320 (88%), Gaps = 1/320 (0%)
Frame = +1
Query: 175 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 354
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 355 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 534
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 535 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 714
FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 180
Query: 715 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRXXXXXXX 894
AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETR
Sbjct: 181 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ 240
Query: 895 XXXXXAPGPSTSR-TPSEPGGQAKATGKDCSRLANGPSNGSSSRQKTSGSGFHREGDTTE 1071
AP PSTSR T SEP GQA+ATGKDCSRLANGPSNGSSSRQ+TSGSGFHREGDT E
Sbjct: 241 QQQSQAPAPSTSRTTSSEPVGQAEATGKDCSRLANGPSNGSSSRQRTSGSGFHREGDTAE 300
Query: 1072 DDFPLSRGTGNKASTPPRKR 1131
DDFP S G GNKAS +R
Sbjct: 301 DDFPSSPGNGNKASNSSEER 320
>ref|XP_849342.1| PREDICTED: similar to Wilms tumor 1-associating protein
(WT1-associated protein) (Putative pre-mRNA splicing
regulator female-lethal(2D) homolog) isoform 1 [Canis
familiaris].
Length = 181
Score = 278 bits (710), Expect = 9e-75
Identities = 148/156 (94%), Positives = 149/156 (95%)
Frame = +1
Query: 406 MRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQ 585
MRLAT+EQEMQ TTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQ
Sbjct: 1 MRLATQEQEMQGSTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQ 60
Query: 586 AQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEEL 765
AQNELSAWKF PDSQTGKK MAKCRMLIQENQELGRQLSQG IAQLEAELALQKKYSEEL
Sbjct: 61 AQNELSAWKFMPDSQTGKKFMAKCRMLIQENQELGRQLSQGCIAQLEAELALQKKYSEEL 120
Query: 766 KSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETR 873
KSSQDELND IIQLD EVEGMQSTILVLQQQLKETR
Sbjct: 121 KSSQDELNDLIIQLD-EVEGMQSTILVLQQQLKETR 155
>ref|XP_849116.1| PREDICTED: similar to Wilms tumour 1-associating protein [Canis
familiaris].
Length = 216
Score = 246 bits (627), Expect = 4e-65
Identities = 129/160 (80%), Positives = 135/160 (84%)
Frame = +1
Query: 145 RAASVRRGFKMTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSN 324
R +R GFK+TNEEPLPKKVRLSETD KVMAR+E ILRWKQYEAYVQALEGKYTDLNSN
Sbjct: 40 RTCGLRLGFKVTNEEPLPKKVRLSETDIKVMAREEFILRWKQYEAYVQALEGKYTDLNSN 99
Query: 325 DVTGLRXXXXXXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRS 504
D GLR ARRE+ILVMRL TKEQE+QECTTQIQY KQVQQP+VAQLRS
Sbjct: 100 D--GLRESEEKLKQQQES-ARRESILVMRLETKEQEVQECTTQIQYFKQVQQPNVAQLRS 156
Query: 505 TMVDPAINLFFLKMKGELEQTKDKLEQAQNELSAWKFTPD 624
TMVDPAINLFFLKMKGELEQTKD LEQAQNELSAWKF PD
Sbjct: 157 TMVDPAINLFFLKMKGELEQTKDNLEQAQNELSAWKFMPD 196
>ref|XP_858471.1| PREDICTED: similar to Wilms tumour 1-associating protein isoform 2
[Canis familiaris].
Length = 150
Score = 213 bits (541), Expect = 4e-55
Identities = 110/130 (84%), Positives = 112/130 (86%)
Frame = +1
Query: 235 MARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXXXXXXXXXXXARRENILVMRL 414
MARDELILRWKQYEAYVQA EG+YTDLNSND TGLR ARRENILVMRL
Sbjct: 1 MARDELILRWKQYEAYVQAWEGEYTDLNSNDATGLRESEEKLKQQQQESARRENILVMRL 60
Query: 415 ATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN 594
AT+EQEMQ TTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN
Sbjct: 61 ATQEQEMQGSTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN 120
Query: 595 ELSAWKFTPD 624
ELSAWKF PD
Sbjct: 121 ELSAWKFMPD 130
>ref|XP_539133.2| PREDICTED: similar to Wilms tumour 1-associating protein [Canis
familiaris].
Length = 84
Score = 126 bits (316), Expect = 5e-29
Identities = 61/64 (95%), Positives = 63/64 (98%)
Frame = +1
Query: 433 MQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQNELSAWK 612
MQECTTQIQYLKQVQQPS+AQ+RSTMVD AINLFFLKMKGELEQTKDKLEQAQNELSAWK
Sbjct: 1 MQECTTQIQYLKQVQQPSIAQMRSTMVDRAINLFFLKMKGELEQTKDKLEQAQNELSAWK 60
Query: 613 FTPD 624
FTPD
Sbjct: 61 FTPD 64
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,301,177
Number of extensions: 944258
Number of successful extensions: 4480
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4431
Number of HSP's successfully gapped: 5
Length of query: 388
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 283
Effective length of database: 15,374,224
Effective search space: 4350905392
Effective search space used: 4350905392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002337
(1166 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004897.2| pre-mRNA-splicing regulator WTAP isoform 1 [Hom... 520 e-148
Alignment gi|NP_690597.1| pre-mRNA-splicing regulator WTAP isoform 2 [Hom... 268 9e-72
Alignment gi|NP_690596.1| pre-mRNA-splicing regulator WTAP isoform 2 [Hom... 268 9e-72
>ref|NP_004897.2| pre-mRNA-splicing regulator WTAP isoform 1 [Homo sapiens].
Length = 396
Score = 520 bits (1340), Expect = e-148
Identities = 274/320 (85%), Positives = 280/320 (87%), Gaps = 1/320 (0%)
Frame = +1
Query: 175 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 354
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 355 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 534
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 535 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 714
FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 180
Query: 715 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRXXXXXXX 894
AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETR
Sbjct: 181 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ 240
Query: 895 XXXXXAPGPSTSR-TPSEPGGQAKATGKDCSRLANGPSNGSSSRQKTSGSGFHREGDTTE 1071
A PSTSR T SEP Q++AT KDCSRL NGPSNGSSSRQ+TSGSGFHREG+TTE
Sbjct: 241 QQQSQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNGSSSRQRTSGSGFHREGNTTE 300
Query: 1072 DDFPLSRGTGNKASTPPRKR 1131
DDFP S G GNK+S +R
Sbjct: 301 DDFPSSPGNGNKSSNSSEER 320
>ref|NP_690597.1| pre-mRNA-splicing regulator WTAP isoform 2 [Homo sapiens].
Length = 151
Score = 268 bits (684), Expect = 9e-72
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +1
Query: 175 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 354
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 355 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 534
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 535 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 624
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
>ref|NP_690596.1| pre-mRNA-splicing regulator WTAP isoform 2 [Homo sapiens].
Length = 151
Score = 268 bits (684), Expect = 9e-72
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +1
Query: 175 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 354
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 355 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 534
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 535 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 624
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,471,812
Number of extensions: 921633
Number of successful extensions: 4120
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4092
Number of HSP's successfully gapped: 3
Length of query: 388
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,868,908
Effective search space: 4222769872
Effective search space used: 4222769872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002337
(1166 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001107005.1| pre-mRNA-splicing regulator WTAP isoform a [... 521 e-148
Alignment gi|NP_001107004.1| pre-mRNA-splicing regulator WTAP isoform b [... 268 8e-72
Alignment gi|NP_780603.1| pre-mRNA-splicing regulator WTAP isoform b [Mus... 268 8e-72
>ref|NP_001107005.1| pre-mRNA-splicing regulator WTAP isoform a [Mus musculus].
Length = 396
Score = 521 bits (1341), Expect = e-148
Identities = 275/320 (85%), Positives = 278/320 (86%), Gaps = 1/320 (0%)
Frame = +1
Query: 175 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 354
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 355 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 534
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 535 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 714
FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 180
Query: 715 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRXXXXXXX 894
AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETR
Sbjct: 181 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ 240
Query: 895 XXXXXAPGPSTSR-TPSEPGGQAKATGKDCSRLANGPSNGSSSRQKTSGSGFHREGDTTE 1071
A PSTSR T SEP QA+ T KDCSRLANGPSNGSSSRQ+TSGSGFHREG T E
Sbjct: 241 QQQSQASAPSTSRTTSSEPVDQAEVTSKDCSRLANGPSNGSSSRQRTSGSGFHREGSTPE 300
Query: 1072 DDFPLSRGTGNKASTPPRKR 1131
DDFP S G GNKAS +R
Sbjct: 301 DDFPSSSGNGNKASNSSEER 320
>ref|NP_001107004.1| pre-mRNA-splicing regulator WTAP isoform b [Mus musculus].
Length = 151
Score = 268 bits (684), Expect = 8e-72
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +1
Query: 175 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 354
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 355 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 534
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 535 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 624
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
>ref|NP_780603.1| pre-mRNA-splicing regulator WTAP isoform b [Mus musculus].
Length = 151
Score = 268 bits (684), Expect = 8e-72
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +1
Query: 175 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 354
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 355 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 534
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 535 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 624
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,462,296
Number of extensions: 776484
Number of successful extensions: 3525
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3501
Number of HSP's successfully gapped: 3
Length of query: 388
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 285
Effective length of database: 12,523,851
Effective search space: 3569297535
Effective search space used: 3569297535
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002337
(1166 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353211.1| PREDICTED: pre-mRNA-splicing regulator WTAP-... 285 4e-77
Alignment gi|XP_003121158.2| PREDICTED: pre-mRNA-splicing regulator WTAP ... 268 6e-72
Alignment gi|XP_001928418.2| PREDICTED: pre-mRNA-splicing regulator WTAP ... 268 6e-72
>ref|XP_003353211.1| PREDICTED: pre-mRNA-splicing regulator WTAP-like [Sus scrofa].
Length = 252
Score = 285 bits (728), Expect = 4e-77
Identities = 147/169 (86%), Positives = 151/169 (89%)
Frame = +1
Query: 625 SQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQ 804
SQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQ
Sbjct: 8 SQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQ 67
Query: 805 LDEEVEGMQSTILVLQQQLKETRXXXXXXXXXXXXAPGPSTSRTPSEPGGQAKATGKDCS 984
LDEEVEGMQSTILVLQQQLKETR APGPSTSRTPSEPGGQA+ATGKDCS
Sbjct: 68 LDEEVEGMQSTILVLQQQLKETRQQLAQYQQQQSQAPGPSTSRTPSEPGGQAEATGKDCS 127
Query: 985 RLANGPSNGSSSRQKTSGSGFHREGDTTEDDFPLSRGTGNKASTPPRKR 1131
RLANGPSNGSSSRQ+TSGSGFHREGDTTEDDFP S G+GNKAS +R
Sbjct: 128 RLANGPSNGSSSRQRTSGSGFHREGDTTEDDFPPSPGSGNKASNSSEER 176
>ref|XP_003121158.2| PREDICTED: pre-mRNA-splicing regulator WTAP isoform 2 [Sus scrofa].
Length = 151
Score = 268 bits (684), Expect = 6e-72
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +1
Query: 175 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 354
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 355 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 534
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 535 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 624
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
>ref|XP_001928418.2| PREDICTED: pre-mRNA-splicing regulator WTAP isoform 1 [Sus scrofa].
Length = 151
Score = 268 bits (684), Expect = 6e-72
Identities = 137/150 (91%), Positives = 137/150 (91%)
Frame = +1
Query: 175 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRXXXX 354
MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLR
Sbjct: 1 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 60
Query: 355 XXXXXXXXXARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 534
ARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF
Sbjct: 61 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 120
Query: 535 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 624
FLKMKGELEQTKDKLEQAQNELSAWKFTPD
Sbjct: 121 FLKMKGELEQTKDKLEQAQNELSAWKFTPD 150
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,478,552
Number of extensions: 696003
Number of successful extensions: 2656
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2643
Number of HSP's successfully gapped: 3
Length of query: 388
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 287
Effective length of database: 8,829,335
Effective search space: 2534019145
Effective search space used: 2534019145
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002337
(1166 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 620 e-175
>Sscrofa_Chr01
|| Length = 315321322
Score = 620 bits (313), Expect = e-175
Identities = 372/388 (95%), Gaps = 3/388 (0%)
Strand = Plus / Minus
Query: 781 gaactgaatgacttcatcattcaacttgacgaagaagtagagggtatgcagagtaccatt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9421155 gaactgaatgacttcatcattcaacttgacgaagaagtagagggtatgcagagtaccatt 9421096
Query: 841 ctagtccttcaacagcagctgaaggagacccgccagcagctggctcagtaccaacagcag 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9421095 ctagtccttcaacagcagctgaaggagacccgccagcagctggctcagtaccaacagcag 9421036
Query: 901 cagtctcaagccccaggcccgagcaccagcaggactccgtctgagcctggaggacaggca 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9421035 cagtctcaagccccaggcccgagcaccagcaggactccgtctgagcctggaggacaggca 9420976
Query: 961 aaagccacagggaaagactgcagtcgtctggccaacggaccaagtaatggcagctcctcc 1020
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420975 gaggccacagggaaagactgcagtcgtctggccaacggaccaagtaatggcagctcctcc 9420916
Query: 1021 cggcagaagacgtctgggtctgggtttcacagggagggcgacacgaccgaagatgacttt 1080
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420915 cggcagaggacgtctgggtctgggtttcacagggagggcgacacgaccgaagatgacttt 9420856
Query: 1081 cctctttctc-ggggaacgggaaataaggcct-caacacctccaaggaaaagactggcag 1138
|||| ||||| ||||| |||||| |||||||| ||||| ||| |||| | ||||||||
Sbjct: 9420855 cctccttctccggggagcgggaa-taaggcctccaacagctcagaggagagaactggcag 9420797
Query: 1139 aggaggtantatttacgtaaaccaactc 1166
|||||||| || ||||||||||||||||
Sbjct: 9420796 aggaggtagtagttacgtaaaccaactc 9420769
Score = 355 bits (179), Expect = 3e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 448 actcaaatccagtacctcaagcaagtccagcagcctagcgttgcccaactgagatcaaca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9428077 actcaaatccagtacctcaagcaagtccagcagcctagcgttgcccaactgagatcaaca 9428018
Query: 508 atggtcgacccagcgatcaacttgtttttcctaaaaatgaaaggtgaactggaacagact 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9428017 atggtcgacccagcgatcaacttgtttttcctaaaaatgaaaggtgaactggaacagact 9427958
Query: 568 aaagacaaactggaacaagcccaaaatgaactgagtgcctggaagtttacgcctgatag 626
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9427957 aaagacaaactggaacaagcccaaaatgaactgagtgcctggaagtttacgcctgatag 9427899
Score = 311 bits (157), Expect = 5e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 625 agccaaacaggcaaaaagttaatggcgaagtgtcgaatgcttatccaggagaatcaagag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9422245 agccaaacaggcaaaaagttaatggcgaagtgtcgaatgcttatccaggagaatcaagag 9422186
Query: 685 cttggaaggcagctgtcccagggacgtattgcacaacttgaagcagagttggctttacag 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9422185 cttggaaggcagctgtcccagggacgtattgcacaacttgaagcagagttggctttacag 9422126
Query: 745 aagaaatatagtgaggagcttaaaagcagtcaggatg 781
|||||||||||||||||||||||||||||||||||||
Sbjct: 9422125 aagaaatatagtgaggagcttaaaagcagtcaggatg 9422089
Score = 254 bits (128), Expect = 9e-65
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 320 ctaatgatgtaactggcttaagggagtctgaagaaaaactaaagcaacaacagcaagaat 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9432633 ctaatgatgtaactggcttaagggagtctgaagaaaaactaaagcaacaacagcaagaat 9432574
Query: 380 ctgcacgcagggaaaacatccttgtaatgcgcctagcaaccaaggagcaagagatgcaag 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9432573 ctgcacgcagggaaaacatccttgtaatgcgcctagcaaccaaggagcaagagatgcaag 9432514
Query: 440 agtgtact 447
||||||||
Sbjct: 9432513 agtgtact 9432506
Score = 121 bits (61), Expect = 9e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 259 aggtggaaacaatacgaagcatacgtgcaagctttggagggcaagtacacagatcttaac 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9433970 aggtggaaacaatacgaagcatacgtgcaagctttggagggcaagtacacagatcttaac 9433911
Query: 319 t 319
|
Sbjct: 9433910 t 9433910
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 203 aggttcgactgagtgagacagacttcaaagttatggcacgagacgaattgattctaaggt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9437450 aggttcgactgagtgagacagacttcaaagttatggcacgagacgaattgattctaaggt 9437391
Score = 115 bits (58), Expect = 6e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 1 cattttgtggcagcgagacccgcaaataaaggggagcgccagggctgcggcgggagga 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9447338 cattttgtggcagcgagacccgcaaataaaggggagcgccagggctgcggcgggagga 9447281
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 120 tcggcctatgtgactgggcggcgcccgcgcggcctccgtccggagagg 167
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9447219 tcggcctatgtgactgggcggcgcccgcgcggcctccgtccggagagg 9447172
Score = 85.7 bits (43), Expect = 5e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 165 aggattcaagatgaccaacgaggaacctcttcccaaaaaggtt 207
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9440205 aggattcaagatgaccaacgaggaacctcttcccaaaaaggtt 9440163
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,107,033
Number of extensions: 180
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 9
Length of query: 1166
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1145
Effective length of database: 2,808,413,156
Effective search space: 3215633063620
Effective search space used: 3215633063620
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)