Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002341
(1048 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776567.1| phytanoyl-CoA dioxygenase, peroxisomal precurso... 546 e-155
Alignment gi|NP_001069711.1| phytanoyl-CoA dioxygenase domain-containing ... 57 4e-08
>ref|NP_776567.1| phytanoyl-CoA dioxygenase, peroxisomal precursor [Bos taurus].
Length = 337
Score = 546 bits (1406), Expect = e-155
Identities = 257/326 (78%), Positives = 289/326 (88%), Gaps = 3/326 (0%)
Frame = +3
Query: 78 MERGRAYTRLNTLLQHLGGSSAGAVTAHPTSGA---AKFQPQQFQYTRDNNVLSLEQRQF 248
M+R R RL LL+HLG SAG + AH TSG A F PQQFQYTR+NNVLSLEQR+F
Sbjct: 1 MDRNRXSARLTVLLRHLGCRSAGTIIAHHTSGVGSLASFHPQQFQYTRENNVLSLEQRKF 60
Query: 249 YEENGFLVIKNLVSDADIERFRVQFERICREEVKPLGLMLMRDVSIGKSEYVPCEKMVSK 428
YEENGFLVIKNLVSDADI+RFR +FERICR+EVKPLGL +MRDV+I KSEYVP EK+VSK
Sbjct: 61 YEENGFLVIKNLVSDADIQRFRNEFERICRKEVKPLGLSVMRDVTITKSEYVPSEKVVSK 120
Query: 429 VQNFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDTGKKTSRHPLHQDLHY 608
VQ+FQED+ELFRYCTLPEILKYVECFTGPNIMAMHT LINKPPD+ KKTSRHPLHQDLHY
Sbjct: 121 VQDFQEDEELFRYCTLPEILKYVECFTGPNIMAMHTXLINKPPDSXKKTSRHPLHQDLHY 180
Query: 609 FPFRPSNNIVCAWTAMEHIDRKNGCLVVFPGTHKGTLKPHDYPQWDGGVNLMFHGIQDYD 788
FPFRPSN+IVCAWTAMEHIDR NGCLVV PGTHKG L+PHDYPQW+GGVN+MFHGIQDYD
Sbjct: 181 FPFRPSNSIVCAWTAMEHIDRNNGCLVVLPGTHKGPLQPHDYPQWEGGVNIMFHGIQDYD 240
Query: 789 KNNTRVYVTMEKGDTVFFHPLLIHGSGRNKTEGFRKAISCHFAASDCKYIDVKGTSQEKI 968
KNN RV++ MEKGDTVFFHPLLIHGSGRNK++GFRKAISCHFA ++C YIDV+GTSQE I
Sbjct: 241 KNNARVHLVMEKGDTVFFHPLLIHGSGRNKSQGFRKAISCHFADANCHYIDVEGTSQENI 300
Query: 969 EKEIVDLTHKFYGLETGSLKNVWTWK 1046
EKE+VD+ K YG + +LK+VWT++
Sbjct: 301 EKEVVDIVRKKYGFKDVTLKDVWTFR 326
>ref|NP_001069711.1| phytanoyl-CoA dioxygenase domain-containing protein 1 [Bos taurus].
Length = 291
Score = 56.6 bits (135), Expect = 4e-08
Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 36/265 (13%)
Frame = +3
Query: 225 LSLEQRQFYEENGFLVIKNLVSDADIERFRVQFERI---------CREEVKPLGLMLMRD 377
LS Q Q ++E+GFLV++ +S + E + + + I CR E +R
Sbjct: 4 LSPSQLQKFQEDGFLVLEGFLSADECEAMQRRIDEIVAKMDVPLHCRTEFSTQEEEQLR- 62
Query: 378 VSIGKSEY------------------------VPCEKMVSKVQNFQEDKE-LFRYCTLPE 482
+ G ++Y VP EK ++K+ + + +FR T
Sbjct: 63 -AQGSTDYFLSSGDKIRFFFEKGVFDKQGNFLVPPEKSINKIGHALHALDPIFRCVTHSH 121
Query: 483 ILKYVECFTGPNI-MAMHTMLINKPPDTGKKTSRHPLHQDLHYFPFRPSNNIVCAWTAME 659
++ + G + + + +M I K P G + + H QD + P ++ W A+E
Sbjct: 122 KVQALARSLGLQMPVVVQSMYIFKQPHFGGEVAPH---QDASFLYTEPLGRVLGLWIALE 178
Query: 660 HIDRKNGCLVVFPGTHKGTLKPHDYPQWDGGV-NLMFHGIQDYDKNNTRVYVTMEKGDTV 836
+NGCL PG+H G + G V F G + N+ V + +G V
Sbjct: 179 DAMLENGCLWFIPGSHTGGVSRRMVRTPAGSVPGTSFLGSEPIRDNSLFVPTPVLRGALV 238
Query: 837 FFHPLLIHGSGRNKTEGFRKAISCH 911
H ++H S +N ++ R+A + H
Sbjct: 239 LIHGEVVHKSEQNLSDRSRQAYTFH 263
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,890,867
Number of extensions: 1281923
Number of successful extensions: 3875
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3868
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,273,310
Effective search space: 3511234260
Effective search space used: 3511234260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002341
(1048 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849313.1| PREDICTED: similar to phytanoyl-CoA hydroxylase... 517 e-147
Alignment gi|XP_535184.2| PREDICTED: similar to phytanoyl-CoA hydroxylase... 504 e-143
Alignment gi|XP_849299.1| PREDICTED: similar to phytanoyl-CoA hydroxylase... 416 e-116
Alignment gi|XP_851122.1| PREDICTED: similar to phytanoyl-CoA dioxygenase... 62 9e-10
>ref|XP_849313.1| PREDICTED: similar to phytanoyl-CoA hydroxylase precursor [Canis
familiaris].
Length = 438
Score = 517 bits (1332), Expect = e-147
Identities = 245/337 (72%), Positives = 282/337 (83%), Gaps = 3/337 (0%)
Frame = +3
Query: 9 PEAGSPAELNWAAARQPGVPTEAMERGRAYTRLNTLLQHLGGSSAGAVTAHPTSGAAK-- 182
P PA + +P P AM + +A RL +L HLG +SA A+PTSGA
Sbjct: 79 PTPPRPALQQLSGPAEPS-PVAAMNQRQAAARLRVVLGHLGQTSARTGVAYPTSGAVSPN 137
Query: 183 -FQPQQFQYTRDNNVLSLEQRQFYEENGFLVIKNLVSDADIERFRVQFERICREEVKPLG 359
F P QFQYTRDN+VLSLEQR+FYEENGFLVIKNLVSDADI+RFR QFERICR EVKP
Sbjct: 138 SFHPPQFQYTRDNDVLSLEQRKFYEENGFLVIKNLVSDADIQRFRDQFERICRGEVKPEQ 197
Query: 360 LMLMRDVSIGKSEYVPCEKMVSKVQNFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTM 539
+M+MRDVSI KSEY+P E+M+SK+Q F++DKELFRYCTLPEILKYVECFTGPNIMAMHTM
Sbjct: 198 MMIMRDVSIAKSEYIPSERMISKIQYFEDDKELFRYCTLPEILKYVECFTGPNIMAMHTM 257
Query: 540 LINKPPDTGKKTSRHPLHQDLHYFPFRPSNNIVCAWTAMEHIDRKNGCLVVFPGTHKGTL 719
LINKPPD+GKKTSRHPLHQDLHYFPFRP+N IVCAWTAMEHIDR NGCL V PGTHKG L
Sbjct: 258 LINKPPDSGKKTSRHPLHQDLHYFPFRPNNKIVCAWTAMEHIDRNNGCLCVLPGTHKGPL 317
Query: 720 KPHDYPQWDGGVNLMFHGIQDYDKNNTRVYVTMEKGDTVFFHPLLIHGSGRNKTEGFRKA 899
KPHDYP W+GGVNLMF+GIQDYD+N+ V++ MEKGDTVFFHPLLIHGSG NKT+G+RKA
Sbjct: 318 KPHDYPNWEGGVNLMFYGIQDYDENSPCVHLVMEKGDTVFFHPLLIHGSGWNKTQGYRKA 377
Query: 900 ISCHFAASDCKYIDVKGTSQEKIEKEIVDLTHKFYGL 1010
ISCHFA++DC YIDVKGTSQE +E+E+++L H+ YG+
Sbjct: 378 ISCHFASADCHYIDVKGTSQEIVEREVMELVHRLYGI 414
>ref|XP_535184.2| PREDICTED: similar to phytanoyl-CoA hydroxylase precursor [Canis
familiaris].
Length = 540
Score = 504 bits (1299), Expect = e-143
Identities = 250/347 (72%), Positives = 285/347 (82%), Gaps = 6/347 (1%)
Frame = +3
Query: 12 EAGSPAELNWAAARQPGVPTE--AMERGRAYTRLNTLLQHLGGSSAGAVTAHPTSGAAK- 182
EA + AE A AR P P+ AM + +A RL +L HLG +SA A+ TS A
Sbjct: 182 EAEAEAE---ADARDPAEPSPVAAMNQRQAAARLRVVLGHLGQTSARTGVAYSTSRAVSP 238
Query: 183 --FQPQQFQYTRDNNVLSLEQRQFYEENGFLVIKNLVSDADIERFRVQFERICREEVKPL 356
F P QFQYT+ N VLSLEQR+FYEENGFLVIK+LVSDADI+RFR QFERICR EVKP
Sbjct: 239 NSFHPPQFQYTQHNAVLSLEQRKFYEENGFLVIKSLVSDADIQRFRDQFERICRGEVKPE 298
Query: 357 GLMLMRDVSIGKSEYVPCEKMVSKVQNFQEDKELFRYCTLPEILKYVECFTGPNIMAMHT 536
+M+MRDVSI KSEY+P E+M+SK+Q+FQEDKELFRYCTLPEILKYVECFTGPNIMAMHT
Sbjct: 299 QMMIMRDVSIAKSEYIPSERMISKIQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHT 358
Query: 537 MLINKPPDTGKKTSRHPLHQDLHYFPFRPSNNIVCAWTAMEHIDRKNGCLVVFPGTHKGT 716
MLINKPPD+GKKTSRHPLHQDL YFPFRPSN IVCAWTAMEHIDR NGCL V PGTHKG
Sbjct: 359 MLINKPPDSGKKTSRHPLHQDLLYFPFRPSNKIVCAWTAMEHIDRNNGCLCVLPGTHKGP 418
Query: 717 LKPHDYPQWDGGVNLMFHGIQDYDKNNTRVYVTMEKGDTVFFHPLLIHGSGRNKTEGFRK 896
LKPHDYPQW+GGVNLMF+GIQDYD+ RV++ MEKGDTVFFHPLLIHGSG N+T+G+RK
Sbjct: 419 LKPHDYPQWEGGVNLMFYGIQDYDEKTPRVHLVMEKGDTVFFHPLLIHGSGWNRTQGYRK 478
Query: 897 AISCHFAASDCKYIDVKGTSQEKIEKEIVDLTHKFYGL-ETGSLKNV 1034
AISCHFA++DC YIDVKGTSQ+ E++IV + HK YG+ + SLK V
Sbjct: 479 AISCHFASADCHYIDVKGTSQDVTERDIVGIGHKLYGIPKDTSLKEV 525
>ref|XP_849299.1| PREDICTED: similar to phytanoyl-CoA hydroxylase precursor [Canis
familiaris].
Length = 269
Score = 416 bits (1068), Expect = e-116
Identities = 185/231 (80%), Positives = 212/231 (91%)
Frame = +3
Query: 318 QFERICREEVKPLGLMLMRDVSIGKSEYVPCEKMVSKVQNFQEDKELFRYCTLPEILKYV 497
QFERICR EVKP +++MRDVSI KSEY+P E+M+SK+Q FQEDKELFRYCTLPEILKYV
Sbjct: 7 QFERICRGEVKPKQMIIMRDVSIAKSEYIPSERMISKIQGFQEDKELFRYCTLPEILKYV 66
Query: 498 ECFTGPNIMAMHTMLINKPPDTGKKTSRHPLHQDLHYFPFRPSNNIVCAWTAMEHIDRKN 677
CFTGPNIMAMH MLINKPPD+GKKTSRHPLHQDLHYFPFRPSN IVCAWTAMEHIDR N
Sbjct: 67 VCFTGPNIMAMHAMLINKPPDSGKKTSRHPLHQDLHYFPFRPSNKIVCAWTAMEHIDRNN 126
Query: 678 GCLVVFPGTHKGTLKPHDYPQWDGGVNLMFHGIQDYDKNNTRVYVTMEKGDTVFFHPLLI 857
GCL VFPGTHKG LKPH+YPQW+GGVNLMF+GIQDYD+N+ RV++ MEKGDTVFFHPLLI
Sbjct: 127 GCLCVFPGTHKGYLKPHNYPQWEGGVNLMFYGIQDYDENSPRVHLVMEKGDTVFFHPLLI 186
Query: 858 HGSGRNKTEGFRKAISCHFAASDCKYIDVKGTSQEKIEKEIVDLTHKFYGL 1010
HGSG N+T+G+RKAISCHFA++DC YIDVKGTSQE +E+E+++L H+ YG+
Sbjct: 187 HGSGWNRTQGYRKAISCHFASADCHYIDVKGTSQEIVEREVMELVHRLYGI 237
>ref|XP_851122.1| PREDICTED: similar to phytanoyl-CoA dioxygenase domain containing 1
(predicted) [Canis familiaris].
Length = 312
Score = 62.0 bits (149), Expect = 9e-10
Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 34/267 (12%)
Frame = +3
Query: 225 LSLEQRQFYEENGFLVIKN----------------LVSDADIE-RFRVQFERICREEVKP 353
LS Q Q ++E+GFLV++ LV+D D+ R++F E+++
Sbjct: 25 LSPSQLQKFQEDGFLVLEGFLSADECVAMQQRIGELVADMDVPLHCRIEFSTQEEEQLRS 84
Query: 354 LG-------------LMLMRDVSIGKSEY-VPCEKMVSKVQN-FQEDKELFRYCT-LPEI 485
G + V K + VP EK ++K+ + +FR+ T P++
Sbjct: 85 QGKKDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFRHVTHSPKV 144
Query: 486 LKYVECFTGPNIMAMHTMLINKPPDTGKKTSRHPLHQDLHYFPFRPSNNIVCAWTAMEHI 665
+ + + +M I K P G + S H QD + P ++ W A+E
Sbjct: 145 QALAKSLGLQMPVVVQSMYIFKQPHFGGEVSPH---QDSTFLYTEPLGRVLGIWIALEDA 201
Query: 666 DRKNGCLVVFPGTHKGTLKPHDYPQWDG-GVNLMFHGIQDYDKNNTRVYVTMEKGDTVFF 842
+NGCL PG+H G + + G +N F G + ++ V +++G +
Sbjct: 202 TLENGCLWFIPGSHTGGVSRRMVRAFAGLKLNTRFLGSEPVWDDSLFVPTPVQRGALILI 261
Query: 843 HPLLIHGSGRNKTEGFRKAISCHFAAS 923
H ++H S +N ++ R A + H S
Sbjct: 262 HGEVVHKSEQNLSDRSRHAYTFHLMES 288
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,752,852
Number of extensions: 1322406
Number of successful extensions: 4004
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3995
Number of HSP's successfully gapped: 4
Length of query: 349
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 245
Effective length of database: 15,407,560
Effective search space: 3774852200
Effective search space used: 3774852200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002341
(1048 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006205.1| phytanoyl-CoA dioxygenase, peroxisomal isoform ... 540 e-154
Alignment gi|NP_001032626.1| phytanoyl-CoA dioxygenase, peroxisomal isofo... 404 e-113
Alignment gi|NP_001094346.1| phytanoyl-CoA dioxygenase domain-containing ... 50 3e-06
>ref|NP_006205.1| phytanoyl-CoA dioxygenase, peroxisomal isoform a precursor [Homo
sapiens].
Length = 338
Score = 540 bits (1392), Expect = e-154
Identities = 254/327 (77%), Positives = 289/327 (88%), Gaps = 4/327 (1%)
Frame = +3
Query: 78 MERGRAYTRLNTLLQHLGGSSAGAVTAHPTSG---AAKFQPQQFQYTRDNNVLSLEQRQF 248
ME+ RA RL +L HLG SAGAV AHPTSG +A F PQQFQYT DNNVL+LEQR+F
Sbjct: 1 MEQLRAAARLQIVLGHLGRPSAGAVVAHPTSGTISSASFHPQQFQYTLDNNVLTLEQRKF 60
Query: 249 YEENGFLVIKNLVSDADIERFRVQFERICREEVKPLGLMLMRDVSIGKSEYVPCEKMVSK 428
YEENGFLVIKNLV DADI+RFR +FE+ICR+EVKPLGL +MRDV+I KSEY P EKM++K
Sbjct: 61 YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITK 120
Query: 429 VQNFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDTGKKTSRHPLHQDLHY 608
VQ+FQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPD+GKKTSRHPLHQDLHY
Sbjct: 121 VQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHY 180
Query: 609 FPFRPSNNIVCAWTAMEHIDRKNGCLVVFPGTHKGTLKPHDYPQWDGGVNLMFHGIQDYD 788
FPFRPS+ IVCAWTAMEHI R NGCLVV PGTHKG+LKPHDYP+W+GGVN MFHGIQDY+
Sbjct: 181 FPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYE 240
Query: 789 KNNTRVYVTMEKGDTVFFHPLLIHGSGRNKTEGFRKAISCHFAASDCKYIDVKGTSQEKI 968
+N RV++ MEKGDTVFFHPLLIHGSG+NKT+GFRKAISCHFA++DC YIDVKGTSQE I
Sbjct: 241 ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENI 300
Query: 969 EKEIVDLTHKFYGLETG-SLKNVWTWK 1046
EKE+V + HKF+G E +LK++W ++
Sbjct: 301 EKEVVGIAHKFFGAENSVNLKDIWMFR 327
>ref|NP_001032626.1| phytanoyl-CoA dioxygenase, peroxisomal isoform b precursor [Homo
sapiens].
Length = 238
Score = 404 bits (1039), Expect = e-113
Identities = 182/227 (80%), Positives = 207/227 (91%), Gaps = 1/227 (0%)
Frame = +3
Query: 369 MRDVSIGKSEYVPCEKMVSKVQNFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLIN 548
MRDV+I KSEY P EKM++KVQ+FQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLIN
Sbjct: 1 MRDVTISKSEYAPSEKMITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLIN 60
Query: 549 KPPDTGKKTSRHPLHQDLHYFPFRPSNNIVCAWTAMEHIDRKNGCLVVFPGTHKGTLKPH 728
KPPD+GKKTSRHPLHQDLHYFPFRPS+ IVCAWTAMEHI R NGCLVV PGTHKG+LKPH
Sbjct: 61 KPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPH 120
Query: 729 DYPQWDGGVNLMFHGIQDYDKNNTRVYVTMEKGDTVFFHPLLIHGSGRNKTEGFRKAISC 908
DYP+W+GGVN MFHGIQDY++N RV++ MEKGDTVFFHPLLIHGSG+NKT+GFRKAISC
Sbjct: 121 DYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISC 180
Query: 909 HFAASDCKYIDVKGTSQEKIEKEIVDLTHKFYGLETG-SLKNVWTWK 1046
HFA++DC YIDVKGTSQE IEKE+V + HKF+G E +LK++W ++
Sbjct: 181 HFASADCHYIDVKGTSQENIEKEVVGIAHKFFGAENSVNLKDIWMFR 227
>ref|NP_001094346.1| phytanoyl-CoA dioxygenase domain-containing protein 1 isoform a
[Homo sapiens].
Length = 291
Score = 50.1 bits (118), Expect = 3e-06
Identities = 58/263 (22%), Positives = 107/263 (40%), Gaps = 34/263 (12%)
Frame = +3
Query: 225 LSLEQRQFYEENGFLVIKN----------------LVSDADIE-RFRVQFERICREEVKP 353
LS Q Q ++++GFLV++ +V++ D+ R +F E+++
Sbjct: 4 LSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRA 63
Query: 354 LG-------------LMLMRDVSIGKSEY-VPCEKMVSKVQN-FQEDKELFRYCTLPEIL 488
G + V K + VP EK ++K+ + +F+ T +
Sbjct: 64 QGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKV 123
Query: 489 KYVECFTGPNI-MAMHTMLINKPPDTGKKTSRHPLHQDLHYFPFRPSNNIVCAWTAMEHI 665
+ + G + + + +M I K P G + S H QD + P ++ W A+E
Sbjct: 124 QTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPH---QDASFLYTEPLGRVLGVWIAVEDA 180
Query: 666 DRKNGCLVVFPGTH-KGTLKPHDYPQWDGGVNLMFHGIQDYDKNNTRVYVTMEKGDTVFF 842
+NGCL PG+H G + F G + N+ V +++G V
Sbjct: 181 TLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLI 240
Query: 843 HPLLIHGSGRNKTEGFRKAISCH 911
H ++H S +N ++ R+A + H
Sbjct: 241 HGEVVHKSKQNLSDRSRQAYTFH 263
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,983,291
Number of extensions: 1304254
Number of successful extensions: 3934
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3928
Number of HSP's successfully gapped: 3
Length of query: 349
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,901,872
Effective search space: 3665860512
Effective search space used: 3665860512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002341
(1048 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034856.1| phytanoyl-CoA dioxygenase, peroxisomal precurso... 508 e-144
Alignment gi|NP_758471.1| phytanoyl-CoA dioxygenase domain-containing pro... 59 8e-09
>ref|NP_034856.1| phytanoyl-CoA dioxygenase, peroxisomal precursor [Mus musculus].
Length = 338
Score = 508 bits (1307), Expect = e-144
Identities = 238/327 (72%), Positives = 274/327 (83%), Gaps = 4/327 (1%)
Frame = +3
Query: 78 MERGRAYTRLNTLLQHLGGSSAGAVTAHPTSGAAK---FQPQQFQYTRDNNVLSLEQRQF 248
M RA RL LL HLG SA + A P SG A FQP+QFQYT DNNVL+LEQR+F
Sbjct: 1 MNLTRAGARLQVLLGHLGRPSAPTIVAQPVSGLASPASFQPEQFQYTLDNNVLTLEQRKF 60
Query: 249 YEENGFLVIKNLVSDADIERFRVQFERICREEVKPLGLMLMRDVSIGKSEYVPCEKMVSK 428
YEENGFLVIKNLVSD DI+RFR +FERICREEVKP G+++MRDV++ K +Y+P ++MVSK
Sbjct: 61 YEENGFLVIKNLVSDDDIQRFRAEFERICREEVKPPGIVIMRDVALAKQDYMPSDRMVSK 120
Query: 429 VQNFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDTGKKTSRHPLHQDLHY 608
+Q+FQED+ELFRYC LPEILKYVECFTGPNIMA+H MLINKPPD GKKTSRHPLHQDLHY
Sbjct: 121 IQDFQEDEELFRYCLLPEILKYVECFTGPNIMALHGMLINKPPDVGKKTSRHPLHQDLHY 180
Query: 609 FPFRPSNNIVCAWTAMEHIDRKNGCLVVFPGTHKGTLKPHDYPQWDGGVNLMFHGIQDYD 788
FPFRPSN IVCAWTAMEHIDR NGCLVV PGTHKGTLKPHDYP+W+GGVN M+HGIQDYD
Sbjct: 181 FPFRPSNLIVCAWTAMEHIDRNNGCLVVLPGTHKGTLKPHDYPKWEGGVNKMYHGIQDYD 240
Query: 789 KNNTRVYVTMEKGDTVFFHPLLIHGSGRNKTEGFRKAISCHFAASDCKYIDVKGTSQEKI 968
N+ RV++ MEKGDTVFFHPLLIHGSGRNKT+GFRKAISCHF +SDC+ IDV GTSQE I
Sbjct: 241 PNSPRVHLVMEKGDTVFFHPLLIHGSGRNKTQGFRKAISCHFGSSDCQCIDVSGTSQENI 300
Query: 969 EKEIVDLTHKFYGLE-TGSLKNVWTWK 1046
+E+V++ K YG + K+ W ++
Sbjct: 301 AREVVEMAEKKYGFQGVMDFKDTWIFR 327
>ref|NP_758471.1| phytanoyl-CoA dioxygenase domain-containing protein 1 [Mus
musculus].
Length = 311
Score = 58.5 bits (140), Expect = 8e-09
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 3/173 (1%)
Frame = +3
Query: 402 VPCEKMVSKVQN-FQEDKELFRYCT-LPEILKYVECFTGPNIMAMHTMLINKPPDTGKKT 575
VP EK ++K+ + +FR T P++ V + + +M I K P G +
Sbjct: 114 VPPEKSINKIGHALHAHDPVFRSITHSPKVQALVRSLGLQMPVVVQSMYIFKQPHFGGEV 173
Query: 576 SRHPLHQDLHYFPFRPSNNIVCAWTAMEHIDRKNGCLVVFPGTH-KGTLKPHDYPQWDGG 752
S H QD + P ++ W AME +NGCL PG+H +G + D G
Sbjct: 174 SPH---QDATFLYTEPLGRVLGLWIAMEDAMLENGCLWFIPGSHTRGVSRRMIRAPSDSG 230
Query: 753 VNLMFHGIQDYDKNNTRVYVTMEKGDTVFFHPLLIHGSGRNKTEGFRKAISCH 911
F G +N V + + +G V H ++H S +N ++ R+A + H
Sbjct: 231 PGTSFLGSDPAWASNLFVPLPVRRGGLVLIHGEVVHKSEQNHSDHSRQAYTVH 283
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,225,447
Number of extensions: 1102069
Number of successful extensions: 3095
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3090
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 247
Effective length of database: 12,553,887
Effective search space: 3100810089
Effective search space used: 3100810089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002341
(1048 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106918.1| phytanoyl-CoA dioxygenase, peroxisomal [Sus ... 486 e-137
Alignment gi|XP_001928876.1| PREDICTED: phytanoyl-CoA dioxygenase domain-... 60 2e-09
Alignment gi|XP_003122259.1| PREDICTED: phytanoyl-CoA dioxygenase domain-... 53 2e-07
>ref|NP_001106918.1| phytanoyl-CoA dioxygenase, peroxisomal [Sus scrofa].
Length = 237
Score = 486 bits (1250), Expect = e-137
Identities = 225/226 (99%), Positives = 225/226 (99%)
Frame = +3
Query: 369 MRDVSIGKSEYVPCEKMVSKVQNFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLIN 548
MRDVSIGKSEYVPCEKMVSKVQNFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLIN
Sbjct: 1 MRDVSIGKSEYVPCEKMVSKVQNFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLIN 60
Query: 549 KPPDTGKKTSRHPLHQDLHYFPFRPSNNIVCAWTAMEHIDRKNGCLVVFPGTHKGTLKPH 728
KPPDTGKKTSRHPLHQDLHYFPFRPSNNIVCAW AMEHIDRKNGCLVVFPGTHKGTLKPH
Sbjct: 61 KPPDTGKKTSRHPLHQDLHYFPFRPSNNIVCAWAAMEHIDRKNGCLVVFPGTHKGTLKPH 120
Query: 729 DYPQWDGGVNLMFHGIQDYDKNNTRVYVTMEKGDTVFFHPLLIHGSGRNKTEGFRKAISC 908
DYPQWDGGVNLMFHGIQDYDKNNTRVYVTMEKGDTVFFHPLLIHGSGRNKTEGFRKAISC
Sbjct: 121 DYPQWDGGVNLMFHGIQDYDKNNTRVYVTMEKGDTVFFHPLLIHGSGRNKTEGFRKAISC 180
Query: 909 HFAASDCKYIDVKGTSQEKIEKEIVDLTHKFYGLETGSLKNVWTWK 1046
HFAASDCKYIDVKGTSQEKIEKEIVDLTHKFYGLETGSLKNVWTWK
Sbjct: 181 HFAASDCKYIDVKGTSQEKIEKEIVDLTHKFYGLETGSLKNVWTWK 226
>ref|XP_001928876.1| PREDICTED: phytanoyl-CoA dioxygenase domain-containing protein 1
isoform 1 [Sus scrofa].
Length = 291
Score = 60.5 bits (145), Expect = 2e-09
Identities = 64/263 (24%), Positives = 106/263 (40%), Gaps = 34/263 (12%)
Frame = +3
Query: 225 LSLEQRQFYEENGFLVIKN----------------LVSDADIERF-RVQFERICREEVKP 353
LS Q Q ++E+GFLV++ LV++ D+ R R +F E+++
Sbjct: 4 LSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQLRA 63
Query: 354 LG-------------LMLMRDVSIGKSEY-VPCEKMVSKVQN-FQEDKELFRYCT-LPEI 485
G + V K + VP EK ++K+ + +FR T P++
Sbjct: 64 QGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHSPKV 123
Query: 486 LKYVECFTGPNIMAMHTMLINKPPDTGKKTSRHPLHQDLHYFPFRPSNNIVCAWTAMEHI 665
+ + +M I K P G + S H QD + P ++ W A+E
Sbjct: 124 QALARSLGLQMPVVVQSMYIFKQPHFGGEVSPH---QDASFLYTEPLGRVLGMWMALEDA 180
Query: 666 DRKNGCLVVFPGTHKGTLKPHDYPQWDGGV-NLMFHGIQDYDKNNTRVYVTMEKGDTVFF 842
+NGCL PG+H G + G F G + NN V + +G V
Sbjct: 181 TLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLI 240
Query: 843 HPLLIHGSGRNKTEGFRKAISCH 911
H ++H S +N ++ R+A + H
Sbjct: 241 HGEVVHKSEQNLSDRSRQAYTFH 263
>ref|XP_003122259.1| PREDICTED: phytanoyl-CoA dioxygenase domain-containing protein 1
isoform 2 [Sus scrofa].
Length = 270
Score = 53.1 bits (126), Expect = 2e-07
Identities = 61/262 (23%), Positives = 102/262 (38%), Gaps = 33/262 (12%)
Frame = +3
Query: 225 LSLEQRQFYEENGFLVIKN----------------LVSDADIERF-RVQFERICREEVKP 353
LS Q Q ++E+GFLV++ LV++ D+ R R +F E+++
Sbjct: 4 LSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQLRA 63
Query: 354 LG-------------LMLMRDVSIGKSEY-VPCEKMVSKVQN-FQEDKELFRYCTLPEIL 488
G + V K + VP EK ++K+ + +FR
Sbjct: 64 QGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFR-------- 115
Query: 489 KYVECFTGPNIMAMHTMLINKPPDTGKKTSRHPLHQDLHYFPFRPSNNIVCAWTAMEHID 668
C T H+ + +P G+ + HQD + P ++ W A+E
Sbjct: 116 ----CIT-------HSPKVQQPHFGGEVSP----HQDASFLYTEPLGRVLGMWMALEDAT 160
Query: 669 RKNGCLVVFPGTHKGTLKPHDYPQWDGGV-NLMFHGIQDYDKNNTRVYVTMEKGDTVFFH 845
+NGCL PG+H G + G F G + NN V + +G V H
Sbjct: 161 LENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLIH 220
Query: 846 PLLIHGSGRNKTEGFRKAISCH 911
++H S +N ++ R+A + H
Sbjct: 221 GEVVHKSEQNLSDRSRQAYTFH 242
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,262,264
Number of extensions: 824684
Number of successful extensions: 2521
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2518
Number of HSP's successfully gapped: 3
Length of query: 349
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 249
Effective length of database: 8,854,232
Effective search space: 2204703768
Effective search space used: 2204703768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002341
(1048 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894817.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 341 5e-91
gb|GL896181.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 105 5e-20
>gb|GL894817.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3444
Length = 35093
Score = 341 bits (172), Expect = 5e-91
Identities = 181/184 (98%)
Strand = Plus / Plus
Query: 564 ggcaagaagacatcccgtcaccccttgcaccaggatctgcactatttccccttcaggccc 623
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9782 ggcaagaagacatcccgtcaccccttgcaccaggatctgcactatttccccttgaggccc 9841
Query: 624 agcaataacattgtttgtgcctggacggccatggagcacattgaccggaaaaatggctgt 683
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 9842 agcaataacattgtttgtgcctggacggccatggagcacatcgaccggaaaaatggctgt 9901
Query: 684 ctggttgtgttcccaggaactcacaaaggcaccttgaaaccgcatgattatccccagtgg 743
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9902 ctggttgtgttcccaggaactcacaaaggcaccttgaaaccgcacgattatccccagtgg 9961
Query: 744 gacg 747
||||
Sbjct: 9962 gacg 9965
Score = 325 bits (164), Expect = 3e-86
Identities = 170/172 (98%)
Strand = Plus / Plus
Query: 311 tagggttcagtttgaaagaatctgcagagaggaggtgaaaccactgggattgatgctgat 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4719 tagggttcagtttgaaagaatctgcagagaggaggtgaaaccactgggattgatgctgat 4778
Query: 371 gagagatgtgtccattggcaaatctgaatatgttccatgtgagaaaatggtctccaaggt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4779 gagagatgtgtccattggcaaatctgaatatgttccatgtgagaaaatggtctccaaggt 4838
Query: 431 ccaaaatttccaagaagataaagaactcttcagatactgcacccttcctgag 482
||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 4839 ccaaaatttccaagaagataaggagctcttcagatactgcacccttcctgag 4890
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 747 ggaggagttaacctcatgtttcatgggatccaggactatgacaaaaataacacccgggtg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12342 ggaggagttaacctcatgtttcatgggatccaggactatgacaaaaataacacccgggtg 12401
Query: 807 tatgtcacaatggagaaaggagacactgttttctttcatcctctgctcatccatggatct 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12402 tatgtcacaatggagaaaggagacactgttttctttcatcctctgctcatccatggatct 12461
Query: 867 ggtcggaacaaaactgaaggattccggaagg 897
|||||||||||||||||||||||||||||||
Sbjct: 12462 ggtcggaacaaaactgaaggattccggaagg 12492
Score = 270 bits (136), Expect = 1e-69
Identities = 148/152 (97%)
Strand = Plus / Plus
Query: 1 cacaccacccggaggcggggtcgccagcagagttaaactgggcggcggcccggcagcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 cacaccacccggaggcggggtcgccagcagagttaaactgggcggcggcccggcagcctg 924
Query: 61 gggtccccaccgaggccatggagagaggccgggcgtacacccgcctgaacaccttgctgc 120
|||||||||||||| |||||||||||||||| | |||||||||||| |||||||||||||
Sbjct: 925 gggtccccaccgagcccatggagagaggccgcgagtacacccgcctcaacaccttgctgc 984
Query: 121 aacaccttggcggcagctccgctggggccgtc 152
||||||||||||||||||||||||||||||||
Sbjct: 985 aacaccttggcggcagctccgctggggccgtc 1016
Score = 254 bits (128), Expect = 8e-65
Identities = 131/132 (99%)
Strand = Plus / Plus
Query: 896 ggcaatttcctgccattttgcagcttccgactgcaaatacattgacgtaaagggcaccag 955
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 14694 ggcaatttcctgccattttgcagcttctgactgcaaatacattgacgtaaagggcaccag 14753
Query: 956 tcaagaaaagattgaaaaggaaattgtagacttaacccataaattctatggtttggaaac 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14754 tcaagaaaagattgaaaaggaaattgtagacttaacccataaattctatggtttggaaac 14813
Query: 1016 tggcagtctgaa 1027
||||||||||||
Sbjct: 14814 tggcagtctgaa 14825
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 203 gtatactcgggataataatgttctaagcctagaacagagacaattttatgaagaaaatgg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3997 gtatactcgggataataatgttctaagcctagaacagagacaattttatgaagaaaatgg 4056
Query: 263 gtttcttgtcattaaaaatttggtatctgatgctgatattgaacgctttagg 314
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4057 gtttcttgtcattaaaaatttggtatctgatgctgatattgaacgctttagg 4108
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 481 agattctgaagtatgtggagtgcttcactggacccaatattatggccatgcatacaatgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8084 agattctgaagtatgtggagtgcttcactggacccaatattatggccatgcatacaatgc 8143
Query: 541 tgataaacaaacctccagatactgg 565
|||||||||||||||||||||||||
Sbjct: 8144 tgataaacaaacctccagatactgg 8168
>gb|GL896181.1| Sus scrofa unplaced genomic scaffold chrU_scaffold547
Length = 760
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 153 acagctcatcccacttcaggggctgccaagttccaacctcaacaattccagta 205
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 acagctcatcccacttcaggggctgccaagttccaacctcaacaattccagta 532
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,790,892
Number of extensions: 240
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 8
Length of query: 1048
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1027
Effective length of database: 2,808,413,156
Effective search space: 2884240311212
Effective search space used: 2884240311212
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)