Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002347
(1039 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777235.1| V-type proton ATPase subunit E 1 [Bos taurus]. 309 2e-84
Alignment gi|NP_001073081.1| V-type proton ATPase subunit E 2 [Bos taurus]. 212 5e-55
>ref|NP_777235.1| V-type proton ATPase subunit E 1 [Bos taurus].
Length = 226
Score = 309 bits (792), Expect = 2e-84
Identities = 170/226 (75%), Positives = 171/226 (75%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALSDADVQKQIKHMMAFIEQ FNIEKGRLVQTQRL
Sbjct: 1 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK 60
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
SNLMNQARLKVLRARDDLITDLLNEAKQRL KVVKDTTR
Sbjct: 61 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV 120
Query: 479 XXXXXXXXEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG 658
EPRMIVRCRKQDFPLVKAAVQKAIPVYK+ATKRDVDVQIDQEAYLPEEIAGG
Sbjct: 121 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKVATKRDVDVQIDQEAYLPEEIAGG 180
Query: 659 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 796
VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
Sbjct: 181 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 226
>ref|NP_001073081.1| V-type proton ATPase subunit E 2 [Bos taurus].
Length = 226
Score = 212 bits (539), Expect = 5e-55
Identities = 120/224 (53%), Positives = 141/224 (62%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALSD DVQKQIKHMMAFIEQ FNIEKGRLVQTQRL
Sbjct: 1 MALSDVDVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK 60
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
S L NQARLKVLRAR+DLI++LLN+AK RL ++V D
Sbjct: 61 EKQIEQQKKIQMSTLRNQARLKVLRARNDLISELLNDAKLRLSRIVTDPEFYQGLLDKLV 120
Query: 479 XXXXXXXXEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG 658
EP +IVRCR QD LV+AAVQ+AIP Y + R V+VQ+D+E L + GG
Sbjct: 121 LQGLLRLLEPVVIVRCRPQDHFLVEAAVQRAIPQYTAVSHRCVEVQVDKEVQLATDTTGG 180
Query: 659 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKF 790
VE+Y+ D++I VSNTLESRLDL++QQ MPE+R ALFGANANRKF
Sbjct: 181 VEVYSSDQRIMVSNTLESRLDLLSQQKMPEIRKALFGANANRKF 224
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,360,910
Number of extensions: 908247
Number of successful extensions: 2320
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2314
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002347
(1039 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534937.1| PREDICTED: similar to ATPase, H+ transporting, ... 306 2e-83
Alignment gi|XP_868167.1| PREDICTED: similar to ATPase, H+ transporting, ... 280 2e-75
Alignment gi|XP_868161.1| PREDICTED: similar to ATPase, H+ transporting, ... 263 2e-70
Alignment gi|XP_538480.1| PREDICTED: similar to ATPase, H+ transporting, ... 218 1e-56
Alignment gi|XP_850593.1| PREDICTED: similar to ATPase, H+ transporting, ... 179 3e-45
Alignment gi|XP_850783.1| PREDICTED: similar to ATPase, H+ transporting, ... 176 2e-44
Alignment gi|XP_868156.1| PREDICTED: similar to ATPase, H+ transporting, ... 155 8e-38
Alignment gi|XP_850887.1| PREDICTED: similar to ATPase, H+ transporting, ... 119 6e-27
Alignment gi|XP_849496.1| PREDICTED: similar to ATPase, H+ transporting, ... 117 2e-26
>ref|XP_534937.1| PREDICTED: similar to ATPase, H+ transporting, V1 subunit E isoform
1 isoform 1 [Canis familiaris].
Length = 226
Score = 306 bits (784), Expect = 2e-83
Identities = 168/226 (74%), Positives = 171/226 (75%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALSDADVQKQIKHMMAFIEQ FNIEKGRLVQTQRL
Sbjct: 1 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK 60
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
SNLMNQARLKVLRARDDLITDLLNEAKQRL KVVKDTTR
Sbjct: 61 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV 120
Query: 479 XXXXXXXXEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG 658
EPRMIVRCRKQDFPLVKAAVQKAIP+YKIATK+DVDVQIDQE+YLPEEIAGG
Sbjct: 121 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDVDVQIDQESYLPEEIAGG 180
Query: 659 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 796
VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
Sbjct: 181 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 226
>ref|XP_868167.1| PREDICTED: similar to ATPase, H+ transporting, V1 subunit E isoform
1 isoform 4 [Canis familiaris].
Length = 204
Score = 280 bits (715), Expect = 2e-75
Identities = 158/226 (69%), Positives = 162/226 (71%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALSDADVQKQ + FNIEKGRLVQTQRL
Sbjct: 1 MALSDADVQKQAEE----------------------EFNIEKGRLVQTQRLKIMEYYEKK 38
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
SNLMNQARLKVLRARDDLITDLLNEAKQRL KVVKDTTR
Sbjct: 39 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV 98
Query: 479 XXXXXXXXEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG 658
EPRMIVRCRKQDFPLVKAAVQKAIP+YKIATK+DVDVQIDQE+YLPEEIAGG
Sbjct: 99 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDVDVQIDQESYLPEEIAGG 158
Query: 659 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 796
VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
Sbjct: 159 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 204
>ref|XP_868161.1| PREDICTED: similar to ATPase, H+ transporting, V1 subunit E isoform
1 isoform 3 [Canis familiaris].
Length = 196
Score = 263 bits (673), Expect = 2e-70
Identities = 151/226 (66%), Positives = 154/226 (68%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALSDADVQKQIKHMMAFIEQ FNIEKGRLVQTQRL
Sbjct: 1 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK 60
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
SNLMNQARLKVLRARDDLIT L
Sbjct: 61 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITGLYQ------------------------ 96
Query: 479 XXXXXXXXEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG 658
EPRMIVRCRKQDFPLVKAAVQKAIP+YKIATK+DVDVQIDQE+YLPEEIAGG
Sbjct: 97 ------LLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDVDVQIDQESYLPEEIAGG 150
Query: 659 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 796
VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
Sbjct: 151 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 196
>ref|XP_538480.1| PREDICTED: similar to ATPase, H+ transporting, lysosomal 31kDa, V1
subunit E isoform 2 [Canis familiaris].
Length = 226
Score = 218 bits (554), Expect = 1e-56
Identities = 122/224 (54%), Positives = 143/224 (63%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALSD DVQKQIKHMMAFIEQ FNIEKGRLVQTQRL
Sbjct: 1 MALSDGDVQKQIKHMMAFIEQEANEKAEEIDAKSEEEFNIEKGRLVQTQRLKIMEYYEKK 60
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
S + NQARLKVLRARDDLI++LLN+AK RL ++V D
Sbjct: 61 EKQIEQQKKIQMSTMRNQARLKVLRARDDLISELLNDAKLRLSRIVADPEVYQGLLDKLV 120
Query: 479 XXXXXXXXEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG 658
EP +I+RCR QD LV+AAV KAIP Y + + V+VQ+DQE +L AGG
Sbjct: 121 LQGLLRLLEPVVIIRCRPQDLLLVEAAVLKAIPEYMAVSHKCVEVQVDQEVHLSMNAAGG 180
Query: 659 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKF 790
VE+Y+G+++IKVSNTLESRLDL+AQQ MPE+R ALFGANANRKF
Sbjct: 181 VEVYSGNQRIKVSNTLESRLDLLAQQKMPEIRKALFGANANRKF 224
>ref|XP_850593.1| PREDICTED: similar to ATPase, H+ transporting, V1 subunit E isoform
1 [Canis familiaris].
Length = 140
Score = 179 bits (455), Expect = 3e-45
Identities = 104/147 (70%), Positives = 109/147 (74%), Gaps = 5/147 (3%)
Frame = +2
Query: 335 SNLMNQARLK-----VLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXXXXXXXXX 499
SNLMNQARLK VLRA DDLITDLLNEAKQRL KVV+DTT
Sbjct: 20 SNLMNQARLKSNRCQVLRAIDDLITDLLNEAKQRLRKVVRDTT----------------- 62
Query: 500 XEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGGVEIYNGD 679
RKQDFPLVK AVQKAI +YKIATK+DVDVQIDQE+YLPEEIAGGVEIYNGD
Sbjct: 63 ---------RKQDFPLVKTAVQKAILMYKIATKKDVDVQIDQESYLPEEIAGGVEIYNGD 113
Query: 680 RKIKVSNTLESRLDLIAQQMMPEVRGA 760
K KV+NTLES LDLIAQQMMPEVRGA
Sbjct: 114 HKTKVANTLESLLDLIAQQMMPEVRGA 140
>ref|XP_850783.1| PREDICTED: similar to ATPase, H+ transporting, V1 subunit E isoform
1 [Canis familiaris].
Length = 220
Score = 176 bits (447), Expect = 2e-44
Identities = 97/144 (67%), Positives = 106/144 (73%)
Frame = +2
Query: 365 VLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXXXXXXXXXXEPRMIVRCRKQDFP 544
V +A+ DLI DLLNEAKQ+L KVVKDTT EP+M
Sbjct: 89 VQKAKGDLIADLLNEAKQKLSKVVKDTTNYQVLLDGLVFQGLHQLLEPQMT--------- 139
Query: 545 LVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGGVEIYNGDRKIKVSNTLESRLDL 724
A VQKAIP+YKIATK+DVDVQIDQE+YLPEE AGGVEIYNGDRKIKVSNTLESRLDL
Sbjct: 140 ---AEVQKAIPMYKIATKKDVDVQIDQESYLPEERAGGVEIYNGDRKIKVSNTLESRLDL 196
Query: 725 IAQQMMPEVRGALFGANANRKFLD 796
IAQQMMPEV+GALFG NA+RKFLD
Sbjct: 197 IAQQMMPEVQGALFGGNASRKFLD 220
>ref|XP_868156.1| PREDICTED: similar to ATPase, H+ transporting, V1 subunit E isoform
1 isoform 2 [Canis familiaris].
Length = 165
Score = 155 bits (391), Expect = 8e-38
Identities = 90/145 (62%), Positives = 90/145 (62%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALSDADVQKQIKHMMAFIEQ FNIEKGRLVQTQRL
Sbjct: 1 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK 60
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
SNLMNQARLKVLRARDDLITDLLNEAKQRL KVVKDTTR
Sbjct: 61 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV 120
Query: 479 XXXXXXXXEPRMIVRCRKQDFPLVK 553
EPRMIVRCRKQDFPLVK
Sbjct: 121 LQGLYQLLEPRMIVRCRKQDFPLVK 145
>ref|XP_850887.1| PREDICTED: similar to ATPase, H+ transporting, V1 subunit E isoform
1 [Canis familiaris].
Length = 125
Score = 119 bits (297), Expect = 6e-27
Identities = 69/111 (62%), Positives = 72/111 (64%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALS+A++QKQIKHMMAFIEQ FNIEKGRLVQTQRL
Sbjct: 1 MALSNANMQKQIKHMMAFIEQEASEKAEEIDAKSEEEFNIEKGRLVQTQRLKIMEYCEKK 60
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTR 451
SNLMNQARLKVLRARD LITDLLNEAKQRL KVVKDTTR
Sbjct: 61 EKQIEQQKKIQMSNLMNQARLKVLRARDGLITDLLNEAKQRLSKVVKDTTR 111
>ref|XP_849496.1| PREDICTED: similar to ATPase, H+ transporting, V1 subunit E isoform
1 [Canis familiaris].
Length = 143
Score = 117 bits (293), Expect = 2e-26
Identities = 75/143 (52%), Positives = 78/143 (54%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALSDADVQKQIKHMMAFIEQ FNIEKGRLVQTQRL
Sbjct: 1 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYDKK 60
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
SNLMNQARLKVLRARDDLITDLLNEAKQ + K +
Sbjct: 61 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQ-TQQSGKRYNQSPSVLDGLV 119
Query: 479 XXXXXXXXEPRMIVRCRKQDFPL 547
EP+MIVRCRKQ L
Sbjct: 120 LQGLYQLLEPQMIVRCRKQSLSL 142
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,947,700
Number of extensions: 936897
Number of successful extensions: 2322
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2298
Number of HSP's successfully gapped: 9
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002347
(1039 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001687.1| V-type proton ATPase subunit E 1 isoform a [Hom... 304 8e-83
Alignment gi|NP_001034455.1| V-type proton ATPase subunit E 1 isoform b [... 278 8e-75
Alignment gi|NP_001034456.1| V-type proton ATPase subunit E 1 isoform c [... 261 6e-70
Alignment gi|NP_542384.1| V-type proton ATPase subunit E 2 [Homo sapiens]. 219 4e-57
>ref|NP_001687.1| V-type proton ATPase subunit E 1 isoform a [Homo sapiens].
Length = 226
Score = 304 bits (779), Expect = 8e-83
Identities = 167/226 (73%), Positives = 170/226 (75%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALSDADVQKQIKHMMAFIEQ FNIEKGRLVQTQRL
Sbjct: 1 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK 60
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
SNLMNQARLKVLRARDDLITDLLNEAKQRL KVVKDTTR
Sbjct: 61 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV 120
Query: 479 XXXXXXXXEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG 658
EPRMIVRCRKQDFPLVKAAVQKAIP+YKIATK DVDVQIDQE+YLPE+IAGG
Sbjct: 121 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG 180
Query: 659 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 796
VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
Sbjct: 181 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 226
>ref|NP_001034455.1| V-type proton ATPase subunit E 1 isoform b [Homo sapiens].
Length = 204
Score = 278 bits (710), Expect = 8e-75
Identities = 157/226 (69%), Positives = 161/226 (71%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALSDADVQKQ + FNIEKGRLVQTQRL
Sbjct: 1 MALSDADVQKQAEE----------------------EFNIEKGRLVQTQRLKIMEYYEKK 38
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
SNLMNQARLKVLRARDDLITDLLNEAKQRL KVVKDTTR
Sbjct: 39 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV 98
Query: 479 XXXXXXXXEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG 658
EPRMIVRCRKQDFPLVKAAVQKAIP+YKIATK DVDVQIDQE+YLPE+IAGG
Sbjct: 99 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG 158
Query: 659 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 796
VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
Sbjct: 159 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 204
>ref|NP_001034456.1| V-type proton ATPase subunit E 1 isoform c [Homo sapiens].
Length = 196
Score = 261 bits (668), Expect = 6e-70
Identities = 150/226 (66%), Positives = 153/226 (67%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALSDADVQKQIKHMMAFIEQ FNIEKGRLVQTQRL
Sbjct: 1 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK 60
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
SNLMNQARLKVLRARDDLIT L
Sbjct: 61 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITGLYQ------------------------ 96
Query: 479 XXXXXXXXEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG 658
EPRMIVRCRKQDFPLVKAAVQKAIP+YKIATK DVDVQIDQE+YLPE+IAGG
Sbjct: 97 ------LLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDVDVQIDQESYLPEDIAGG 150
Query: 659 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 796
VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
Sbjct: 151 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 196
>ref|NP_542384.1| V-type proton ATPase subunit E 2 [Homo sapiens].
Length = 226
Score = 219 bits (557), Expect = 4e-57
Identities = 124/224 (55%), Positives = 145/224 (64%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALSD DV+KQIKHMMAFIEQ FNIEKGRLVQTQRL
Sbjct: 1 MALSDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK 60
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
S + NQARLKVLRAR+DLI+DLL+EAK RL ++V+D
Sbjct: 61 EKQIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLV 120
Query: 479 XXXXXXXXEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG 658
EP MIVRCR QD LV+AAVQKAIP Y +++ V+VQID+EAYL AGG
Sbjct: 121 LQGLLRLLEPVMIVRCRPQDLLLVEAAVQKAIPEYMTISQKHVEVQIDKEAYLAVNAAGG 180
Query: 659 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKF 790
VE+Y+G+++IKVSNTLESRLDL A+Q MPE+R ALFGAN NRKF
Sbjct: 181 VEVYSGNQRIKVSNTLESRLDLSAKQKMPEIRMALFGANTNRKF 224
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,235,013
Number of extensions: 920414
Number of successful extensions: 2279
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2265
Number of HSP's successfully gapped: 4
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002347
(1039 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031536.2| V-type proton ATPase subunit E 1 [Mus musculus]. 307 8e-84
Alignment gi|NP_083397.3| V-type proton ATPase subunit E 2 [Mus musculus]. 200 2e-51
>ref|NP_031536.2| V-type proton ATPase subunit E 1 [Mus musculus].
Length = 226
Score = 307 bits (787), Expect = 8e-84
Identities = 169/226 (74%), Positives = 171/226 (75%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALSDADVQKQIKHMMAFIEQ FNIEKGRLVQTQRL
Sbjct: 1 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK 60
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
SNLMNQARLKVLRARDDLITDLLNEAKQRL KVVKDTTR
Sbjct: 61 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV 120
Query: 479 XXXXXXXXEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG 658
EPRMIVRCRKQDFPLVKAAVQKAIP+YKIATK+DVDVQIDQEAYLPEEIAGG
Sbjct: 121 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDVDVQIDQEAYLPEEIAGG 180
Query: 659 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 796
VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD
Sbjct: 181 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKFLD 226
>ref|NP_083397.3| V-type proton ATPase subunit E 2 [Mus musculus].
Length = 226
Score = 200 bits (508), Expect = 2e-51
Identities = 112/224 (50%), Positives = 135/224 (60%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MAL+D DVQKQIKHMMAFIEQ FNIEKGRLVQTQRL
Sbjct: 1 MALTDIDVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMDYFEKK 60
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
S + NQAR+ VLRARD+LI +LL +AK RL ++V D
Sbjct: 61 EKQIEQQKKIQLSTMRNQARITVLRARDNLILELLKDAKMRLSRIVSDEEIYQDLLDKLV 120
Query: 479 XXXXXXXXEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG 658
EP MIVRCR QD LV++AV +AIP Y ++ ++VQ+DQ +LP AGG
Sbjct: 121 LQALLRLLEPVMIVRCRPQDLHLVESAVLRAIPQYMRLCQKHLEVQVDQTEHLPSNAAGG 180
Query: 659 VEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGALFGANANRKF 790
VE+Y+ D+KIKVSNTLESRL+L A Q MPE+RG LFG N +RKF
Sbjct: 181 VEVYSSDQKIKVSNTLESRLNLAAMQKMPEIRGILFGDNTSRKF 224
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,865,869
Number of extensions: 778495
Number of successful extensions: 1932
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1926
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002347
(1039 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126641.2| PREDICTED: v-type proton ATPase subunit E 1 ... 273 1e-73
>ref|XP_003126641.2| PREDICTED: v-type proton ATPase subunit E 1 isoform 2 [Sus scrofa].
Length = 211
Score = 273 bits (697), Expect = 1e-73
Identities = 152/207 (73%), Positives = 153/207 (73%)
Frame = +2
Query: 119 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQTQRLXXXXXXXXX 298
MALSDADVQKQIKHMMAFIEQ FNIEKGRLVQTQRL
Sbjct: 1 MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKK 60
Query: 299 XXXXXXXXXXXXSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRXXXXXXXXX 478
SNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTR
Sbjct: 61 EKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRYQVLLDGLV 120
Query: 479 XXXXXXXXEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG 658
EPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG
Sbjct: 121 LQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDVDVQIDQEAYLPEEIAGG 180
Query: 659 VEIYNGDRKIKVSNTLESRLDLIAQQM 739
VEIYNGDRKIKVSNTLESRLDLIAQQ+
Sbjct: 181 VEIYNGDRKIKVSNTLESRLDLIAQQV 207
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,759,051
Number of extensions: 581769
Number of successful extensions: 1526
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1522
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002347
(1039 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1306 0.0
Sscrofa_Chr03 264 9e-68
>Sscrofa_Chr05
|| Length = 111506441
Score = 1306 bits (659), Expect = 0.0
Identities = 921/1005 (91%), Gaps = 5/1005 (0%)
Strand = Plus / Plus
Query: 38 ggcttttctctcctcttcgcgagaggttctcatcagccttgagctccggcccgtatcccg 97
|||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||
Sbjct: 1367667 ggcttttctctcctcttcacgagaggttctcgtcagccttgagctccggcccatatcccg 1367726
Query: 98 ttgcctcacgtcgcttgcgctatggctctcagcgatgccgacgtgcagaagcagattaag 157
| ||||||| | ||||||||| |||||| ||| ||||| ||||||||||||||||||||
Sbjct: 1367727 tcgcctcacattgcttgcgctctggctc--agcaatgcccacgtgcagaagcagattaag 1367784
Query: 158 cacatgatggcttttattgaacaagaagccaatgagaaagcagaagaaatagatgcgaag 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1367785 cacatgatggcttttattgaacaagaagccaatgagaaagcagaagaaatagatgtgaag 1367844
Query: 218 gcagaagaggagttcaacattgagaaaggtcgtcttgtgcaaacccaaagactgaagatt 277
||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||||
Sbjct: 1367845 gcagaagaggagttcaacattgagaaaagtcgtcttgtacaaacccagagactggagatt 1367904
Query: 278 atggaatattacgagaagaaggaaaagcagattgaacagcagaagaaaattcagatgtct 337
||||||||||||||||| || |||||||||||||||||||||||| ||||||| ||||||
Sbjct: 1367905 atggaatattacgagaaaaaagaaaagcagattgaacagcagaaggaaattcaaatgtct 1367964
Query: 338 aatttgatgaatcaagcgaggctcaaagtcctcagagccagagatgacctcatcacagac 397
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 1367965 aatttgatgaatcaagcgaggctcaaagtcctcagagccagcagtgacctcgtcacagac 1368024
Query: 398 ctgctaaatgaagcgaaacagagactaggcaaagtggtaaaagatacaaccaggtaccaa 457
|||||||||||||| ||||||||||| |||||||||| |||||||||||||||| | |
Sbjct: 1368025 ctgctaaatgaagcaaaacagagactcagcaaagtggtgaaagatacaaccaggtgctga 1368084
Query: 458 gtgctgttggatggactggtcctccagggtttgtaccagttgttggagccccgaatgatc 517
||| || ||||||| |||||||||||| |||||||||||||||| |||||| || | ||
Sbjct: 1368085 gtgtcgtcggatggagtggtcctccaggctttgtaccagttgttgaagccccaaaggttc 1368144
Query: 518 gttcgatgcaggaaacaagatttccctctggtaaaggctgccgtgcagaaagcaatccct 577
|||| |||||||||||||||||||| |||||||||||||| |||||| |||| ||||||
Sbjct: 1368145 cttcgctgcaggaaacaagatttcccgctggtaaaggctgctgtgcaggaagccatccct 1368204
Query: 578 gtttacaaaatcgccaccaaaagagatgttgatgtccagattgatcaggaggcctacctg 637
||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||
Sbjct: 1368205 gtttacaaaatcgccaccaaaagagatgtcgctgtccagactgatcgggaggcctacctg 1368264
Query: 638 cctgaggaaatagctggtggggttgagatctataatggggatcgcaaaatcaaggtctcc 697
||||||||| ||||||| |||||||||||| ||| |||||||| ||||||||||| |||
Sbjct: 1368265 cctgaggaagtagctggcagggttgagatctgtaacggggatcgaaaaatcaaggtttcc 1368324
Query: 698 aataccttagagagccggctggacctcatagctcaacagatgatgccagaggtgcgggga 757
|||||||| |||| |||||||| |||||||||||| |||||| |||||||||||||||||
Sbjct: 1368325 aataccttggagaaccggctgggcctcatagctcagcagatggtgccagaggtgcgggga 1368384
Query: 758 gccttgtttggtgcaaatgccaacaggaagtttttggactaagcctgggaggtggcgttc 817
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1368385 gccttgtttggtgccaatgccaacaggaggtttttggactaagcctgggaggtggcgttc 1368444
Query: 818 atcccctgctctcctcctgggacgtgacgttctgacatttgaagacacccgcgtagcctc 877
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1368445 atcccctgttctcctcgtgggacgtgacgttctgacatttgaagacacccgcgtagcctc 1368504
Query: 878 ctcttcactgt--ttatattctgtgttgatcagtgggtacccttctgtagctaacacccc 935
||||||||||| ||| || ||||||| |||||||||||||||||||||| | |||||||
Sbjct: 1368505 ctcttcactgttcttacatcctgtgtttatcagtgggtacccttctgtagttcacacccc 1368564
Query: 936 tggctgatggtaaatgatggcagaaagattta-tttacatgataggaaacatttttctag 994
|||||||||||||||||||||||| || |||| |||||| ||||||||| ||| ||||
Sbjct: 1368565 tggctgatggtaaatgatggcagagagttttattttacagaataggaaacctttctctaa 1368624
Query: 995 cttatctgaaagtaacccagcttccagctggttccaaagcatgaa 1039
||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 1368625 cttatctgaaagtaacccagcctccagctggttctgaagcatgaa 1368669
Score = 1306 bits (659), Expect = 0.0
Identities = 921/1005 (91%), Gaps = 5/1005 (0%)
Strand = Plus / Plus
Query: 38 ggcttttctctcctcttcgcgagaggttctcatcagccttgagctccggcccgtatcccg 97
|||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||
Sbjct: 1444722 ggcttttctctcctcttcacgagaggttctcgtcagccttgagctccggcccatatcccg 1444781
Query: 98 ttgcctcacgtcgcttgcgctatggctctcagcgatgccgacgtgcagaagcagattaag 157
| ||||||| | ||||||||| |||||| ||| ||||| ||||||||||||||||||||
Sbjct: 1444782 tcgcctcacattgcttgcgctctggctc--agcaatgcccacgtgcagaagcagattaag 1444839
Query: 158 cacatgatggcttttattgaacaagaagccaatgagaaagcagaagaaatagatgcgaag 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1444840 cacatgatggcttttattgaacaagaagccaatgagaaagcagaagaaatagatgtgaag 1444899
Query: 218 gcagaagaggagttcaacattgagaaaggtcgtcttgtgcaaacccaaagactgaagatt 277
||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||||
Sbjct: 1444900 gcagaagaggagttcaacattgagaaaagtcgtcttgtacaaacccagagactggagatt 1444959
Query: 278 atggaatattacgagaagaaggaaaagcagattgaacagcagaagaaaattcagatgtct 337
||||||||||||||||| || |||||||||||||||||||||||| ||||||| ||||||
Sbjct: 1444960 atggaatattacgagaaaaaagaaaagcagattgaacagcagaaggaaattcaaatgtct 1445019
Query: 338 aatttgatgaatcaagcgaggctcaaagtcctcagagccagagatgacctcatcacagac 397
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 1445020 aatttgatgaatcaagcgaggctcaaagtcctcagagccagcagtgacctcgtcacagac 1445079
Query: 398 ctgctaaatgaagcgaaacagagactaggcaaagtggtaaaagatacaaccaggtaccaa 457
|||||||||||||| ||||||||||| |||||||||| |||||||||||||||| | |
Sbjct: 1445080 ctgctaaatgaagcaaaacagagactcagcaaagtggtgaaagatacaaccaggtgctga 1445139
Query: 458 gtgctgttggatggactggtcctccagggtttgtaccagttgttggagccccgaatgatc 517
||| || ||||||| |||||||||||| |||||||||||||||| |||||| || | ||
Sbjct: 1445140 gtgtcgtcggatggagtggtcctccaggctttgtaccagttgttgaagccccaaaggttc 1445199
Query: 518 gttcgatgcaggaaacaagatttccctctggtaaaggctgccgtgcagaaagcaatccct 577
|||| |||||||||||||||||||| |||||||||||||| |||||| |||| ||||||
Sbjct: 1445200 cttcgctgcaggaaacaagatttcccgctggtaaaggctgctgtgcaggaagccatccct 1445259
Query: 578 gtttacaaaatcgccaccaaaagagatgttgatgtccagattgatcaggaggcctacctg 637
||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||
Sbjct: 1445260 gtttacaaaatcgccaccaaaagagatgtcgctgtccagactgatcgggaggcctacctg 1445319
Query: 638 cctgaggaaatagctggtggggttgagatctataatggggatcgcaaaatcaaggtctcc 697
||||||||| ||||||| |||||||||||| ||| |||||||| ||||||||||| |||
Sbjct: 1445320 cctgaggaagtagctggcagggttgagatctgtaacggggatcgaaaaatcaaggtttcc 1445379
Query: 698 aataccttagagagccggctggacctcatagctcaacagatgatgccagaggtgcgggga 757
|||||||| |||| |||||||| |||||||||||| |||||| |||||||||||||||||
Sbjct: 1445380 aataccttggagaaccggctgggcctcatagctcagcagatggtgccagaggtgcgggga 1445439
Query: 758 gccttgtttggtgcaaatgccaacaggaagtttttggactaagcctgggaggtggcgttc 817
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1445440 gccttgtttggtgccaatgccaacaggaggtttttggactaagcctgggaggtggcgttc 1445499
Query: 818 atcccctgctctcctcctgggacgtgacgttctgacatttgaagacacccgcgtagcctc 877
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445500 atcccctgttctcctcgtgggacgtgacgttctgacatttgaagacacccgcgtagcctc 1445559
Query: 878 ctcttcactgt--ttatattctgtgttgatcagtgggtacccttctgtagctaacacccc 935
||||||||||| ||| || ||||||| |||||||||||||||||||||| | |||||||
Sbjct: 1445560 ctcttcactgttcttacatcctgtgtttatcagtgggtacccttctgtagttcacacccc 1445619
Query: 936 tggctgatggtaaatgatggcagaaagattta-tttacatgataggaaacatttttctag 994
|||||||||||||||||||||||| || |||| |||||| ||||||||| ||| ||||
Sbjct: 1445620 tggctgatggtaaatgatggcagagagttttattttacagaataggaaacctttctctaa 1445679
Query: 995 cttatctgaaagtaacccagcttccagctggttccaaagcatgaa 1039
||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 1445680 cttatctgaaagtaacccagcctccagctggttctgaagcatgaa 1445724
Score = 587 bits (296), Expect = e-165
Identities = 306/308 (99%), Gaps = 1/308 (0%)
Strand = Plus / Minus
Query: 733 acagatgatgccagaggtgcggggagccttgtttggtgcaaatgccaacaggaagttttt 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72026009 acagatgatgccagaggtgcggggagccttgtttggtgcaaatgccaacaggaagttttt 72025950
Query: 793 ggactaagcctgggaggtggcgttcatcccctgctctcctcctgggacgtgacgttctga 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72025949 ggactaagcctgggaggtggcgttcatcccctgctctcctcctgggacgtgacgttctga 72025890
Query: 853 catttgaagacacccgcgtagcctcctcttcactgtttatattctgtgttgatcagtggg 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72025889 catttgaagacacccgcgtagcctcctcttcactgtttatattctgtgttgatcagtggg 72025830
Query: 913 tacccttctgtagctaacacccctggctgatggtaaatgatggcagaaagatttattt-a 971
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 72025829 tacccttctgtagctaacacccctggctgatggtaaatgatggcagagagatttatttaa 72025770
Query: 972 catgataggaaacatttttctagcttatctgaaagtaacccagcttccagctggttccaa 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72025769 catgataggaaacatttttctagcttatctgaaagtaacccagcttccagctggttccaa 72025710
Query: 1032 agcatgaa 1039
||||||||
Sbjct: 72025709 agcatgaa 72025702
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 1 gtcactctcacaaaacagagaggccggaagctgcgccggcttttctctcctcttcgcgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72045327 gtcactctcacaaaacagagaggccggaagctgcgccggcttttctctcctcttcgcgag 72045268
Query: 61 aggttctcatcagccttgagctccggcccgtatcccgttgcctcacgtcgcttgcgctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72045267 aggttctcatcagccttgagctccggcccgtatcccgttgcctcacgtcgcttgcgctat 72045208
Query: 121 ggctctcagcgatgccgacgtgcagaagcag 151
|||||||||||||||||||||||||||||||
Sbjct: 72045207 ggctctcagcgatgccgacgtgcagaagcag 72045177
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 216 aggcagaagaggagttcaacattgagaaaggtcgtcttgtgcaaacccaaagactgaaga 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72035840 aggcagaagaggagttcaacattgagaaaggtcgtcttgtgcaaacccaaagactgaaga 72035781
Query: 276 ttatggaatattacgagaagaaggaaaagcagattgaacagcagaagaaaat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72035780 ttatggaatattacgagaagaaggaaaagcagattgaacagcagaagaaaat 72035729
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 552 aggctgccgtgcagaaagcaatccctgtttacaaaatcgccaccaaaagagatgttgatg 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72030877 aggctgccgtgcagaaagcaatccctgtttacaaaatcgccaccaaaagagatgttgatg 72030818
Query: 612 tccagattgatcaggaggcctacctgcctgaggaaat 648
|||||||||||||||||||||||||||||||||||||
Sbjct: 72030817 tccagattgatcaggaggcctacctgcctgaggaaat 72030781
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 395 gacctgctaaatgaagcgaaacagagactaggcaaagtggtaaaagatacaaccaggtac 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72032526 gacctgctaaatgaagcgaaacagagactaggcaaagtggtaaaagatacaaccaggtac 72032467
Query: 455 caagtgctgttggatggactggtcctccagg 485
|||||||||||||||||||||||||||||||
Sbjct: 72032466 caagtgctgttggatggactggtcctccagg 72032436
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 649 agctggtggggttgagatctataatggggatcgcaaaatcaaggtctccaataccttaga 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72027373 agctggtggggttgagatctataatggggatcgcaaaatcaaggtctccaataccttaga 72027314
Query: 709 gagccggctggacctcatagctcaacag 736
||||||||||||||||||||||||||||
Sbjct: 72027313 gagccggctggacctcatagctcaacag 72027286
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 483 agggtttgtaccagttgttggagccccgaatgatcgttcgatgcaggaaacaagatttcc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72031886 agggtttgtaccagttgttggagccccgaatgatcgttcgatgcaggaaacaagatttcc 72031827
Query: 543 ctctggtaaagg 554
||||||||||||
Sbjct: 72031826 ctctggtaaagg 72031815
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 150 agattaagcacatgatggcttttattgaacaagaagccaatgagaaagcagaagaaatag 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72039583 agattaagcacatgatggcttttattgaacaagaagccaatgagaaagcagaagaaatag 72039524
Query: 210 atgcgaagg 218
|||||||||
Sbjct: 72039523 atgcgaagg 72039515
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 328 tcagatgtctaatttgatgaatcaagcgaggctcaaagtcctcagagccagagatgacct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72035359 tcagatgtctaatttgatgaatcaagcgaggctcaaagtcctcagagccagagatgacct 72035300
Query: 388 catcacag 395
||||||||
Sbjct: 72035299 catcacag 72035292
>Sscrofa_Chr03
|| Length = 144787322
Score = 264 bits (133), Expect = 9e-68
Identities = 226/257 (87%)
Strand = Plus / Plus
Query: 140 gtgcagaagcagattaagcacatgatggcttttattgaacaagaagccaatgagaaagca 199
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct: 100117173 gtgcagaagcagattaagcacatgatggctttcattgagcaggaagccaatgagaaggca 100117232
Query: 200 gaagaaatagatgcgaaggcagaagaggagttcaacattgagaaaggtcgtcttgtgcaa 259
|||||||||||||| ||||| || || |||||||||||||||||||| || |||||||||
Sbjct: 100117233 gaagaaatagatgccaaggctgaggaagagttcaacattgagaaaggacgccttgtgcaa 100117292
Query: 260 acccaaagactgaagattatggaatattacgagaagaaggaaaagcagattgaacagcag 319
|||||| |||||||||||||||| ||||| |||||||| || |||||||| || ||||||
Sbjct: 100117293 acccaacgactgaagattatggagtattatgagaagaaagagaagcagatagagcagcag 100117352
Query: 320 aagaaaattcagatgtctaatttgatgaatcaagcgaggctcaaagtcctcagagccaga 379
|||||||| |||||||||| ||| |||||| || ||| | |||||||| |||||| ||
Sbjct: 100117353 aagaaaatccagatgtctaccatgaggaatcaggcaaggttgaaagtcctgagagcccga 100117412
Query: 380 gatgacctcatcacaga 396
|||| |||||| ||||
Sbjct: 100117413 aatgatctcatctcaga 100117429
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,509,785
Number of extensions: 174
Number of successful extensions: 174
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 12
Length of query: 1039
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1018
Effective length of database: 2,808,413,156
Effective search space: 2858964592808
Effective search space used: 2858964592808
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)