Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002353
(1271 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069672.1| negative elongation factor E [Bos taurus]. 244 9e-65
>ref|NP_001069672.1| negative elongation factor E [Bos taurus].
Length = 374
Score = 244 bits (624), Expect = 9e-65
Identities = 132/172 (76%), Positives = 134/172 (77%)
Frame = +3
Query: 96 MLVIPPGLSEEEEXXXXXXXXXXXXXXXXXXXXXQSSSNTASQGGVKRSLSEQPVVDTAT 275
MLVIPPGLSEEEE QSSS+TASQGGVKRSLSEQPVVDTAT
Sbjct: 1 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTASQGGVKRSLSEQPVVDTAT 60
Query: 276 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL 455
ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRS+SADDDL
Sbjct: 61 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSVSADDDL 120
Query: 456 QESSRRPQRKSLYESFVSSSDRLRELXXXXXXXXXXXXXXXXXRSFDWGYEE 611
QESSRRPQRKSLYESFVSSSDRLREL RSFDWGYEE
Sbjct: 121 QESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEE 172
Score = 195 bits (495), Expect = 8e-50
Identities = 101/141 (71%), Positives = 109/141 (77%), Gaps = 4/141 (2%)
Frame = +3
Query: 819 GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE 998
GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE
Sbjct: 238 GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE 297
Query: 999 KMESADQAVAELTGPRWNPCSSRSALPESSPCWMPPLASLSGAPWLSRIAL----KGCHR 1166
KMESADQAVAEL G + + ++ P L + +G +A+ KGCHR
Sbjct: 298 KMESADQAVAELNGTQVESVQLKVSIARKQPM----LDAATGKSVWGSLAVQNSPKGCHR 353
Query: 1167 XKRTQIVYSDDVYKENLVDXF 1229
KRTQIVYSDDVYKENLVD F
Sbjct: 354 DKRTQIVYSDDVYKENLVDGF 374
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,490,929
Number of extensions: 1103788
Number of successful extensions: 3952
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3944
Number of HSP's successfully gapped: 2
Length of query: 423
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 318
Effective length of database: 14,207,134
Effective search space: 4517868612
Effective search space used: 4517868612
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002353
(1271 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532087.1| PREDICTED: similar to Negative elongation facto... 245 7e-65
>ref|XP_532087.1| PREDICTED: similar to Negative elongation factor E (NELF-E) (RD
protein) [Canis familiaris].
Length = 374
Score = 245 bits (625), Expect = 7e-65
Identities = 133/172 (77%), Positives = 134/172 (77%)
Frame = +3
Query: 96 MLVIPPGLSEEEEXXXXXXXXXXXXXXXXXXXXXQSSSNTASQGGVKRSLSEQPVVDTAT 275
MLVIPPGLSEEEE QSSS+TASQGGVKRSLSEQPVVDTAT
Sbjct: 1 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTASQGGVKRSLSEQPVVDTAT 60
Query: 276 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL 455
ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL
Sbjct: 61 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL 120
Query: 456 QESSRRPQRKSLYESFVSSSDRLRELXXXXXXXXXXXXXXXXXRSFDWGYEE 611
QESSRRPQRKSLYESFVSSSDRLREL RSFDWGYEE
Sbjct: 121 QESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEE 172
Score = 195 bits (495), Expect = 9e-50
Identities = 101/141 (71%), Positives = 109/141 (77%), Gaps = 4/141 (2%)
Frame = +3
Query: 819 GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE 998
GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE
Sbjct: 238 GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE 297
Query: 999 KMESADQAVAELTGPRWNPCSSRSALPESSPCWMPPLASLSGAPWLSRIAL----KGCHR 1166
KMESADQAVAEL G + + ++ P L + +G +A+ KGCHR
Sbjct: 298 KMESADQAVAELNGTQVESVQLKVSIARKQPM----LDAATGKSVWGSLAVQNSPKGCHR 353
Query: 1167 XKRTQIVYSDDVYKENLVDXF 1229
KRTQIVYSDDVYKENLVD F
Sbjct: 354 DKRTQIVYSDDVYKENLVDGF 374
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,658,113
Number of extensions: 1012307
Number of successful extensions: 4164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4157
Number of HSP's successfully gapped: 2
Length of query: 423
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 318
Effective length of database: 15,374,224
Effective search space: 4889003232
Effective search space used: 4889003232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002353
(1271 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002895.3| negative elongation factor E [Homo sapiens]. 242 5e-64
>ref|NP_002895.3| negative elongation factor E [Homo sapiens].
Length = 380
Score = 242 bits (618), Expect = 5e-64
Identities = 131/172 (76%), Positives = 133/172 (77%)
Frame = +3
Query: 96 MLVIPPGLSEEEEXXXXXXXXXXXXXXXXXXXXXQSSSNTASQGGVKRSLSEQPVVDTAT 275
MLVIPPGLSEEEE QSSS+T SQGGVKRSLSEQPV+DTAT
Sbjct: 1 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTAT 60
Query: 276 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL 455
ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL
Sbjct: 61 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL 120
Query: 456 QESSRRPQRKSLYESFVSSSDRLRELXXXXXXXXXXXXXXXXXRSFDWGYEE 611
QESSRRPQRKSLYESFVSSSDRLREL RSFDWGYEE
Sbjct: 121 QESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEE 172
Score = 194 bits (492), Expect = 2e-49
Identities = 101/141 (71%), Positives = 108/141 (76%), Gaps = 4/141 (2%)
Frame = +3
Query: 819 GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE 998
GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE
Sbjct: 244 GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE 303
Query: 999 KMESADQAVAELTGPRWNPCSSRSALPESSPCWMPPLASLSGAPWLSRIAL----KGCHR 1166
KMESADQAVAEL G + + + P L + +G +A+ KGCHR
Sbjct: 304 KMESADQAVAELNGTQVESVQLKVNIARKQPM----LDAATGKSVWGSLAVQNSPKGCHR 359
Query: 1167 XKRTQIVYSDDVYKENLVDXF 1229
KRTQIVYSDDVYKENLVD F
Sbjct: 360 DKRTQIVYSDDVYKENLVDGF 380
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,709,003
Number of extensions: 979357
Number of successful extensions: 4000
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3982
Number of HSP's successfully gapped: 2
Length of query: 423
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 318
Effective length of database: 14,835,944
Effective search space: 4717830192
Effective search space used: 4717830192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002353
(1271 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039329.1| negative elongation factor E [Mus musculus]. 234 1e-61
Alignment gi|NP_001039328.1| negative elongation factor E [Mus musculus]. 234 1e-61
Alignment gi|NP_613046.2| negative elongation factor E [Mus musculus]. 234 1e-61
>ref|NP_001039329.1| negative elongation factor E [Mus musculus].
Length = 367
Score = 234 bits (596), Expect = 1e-61
Identities = 127/172 (73%), Positives = 129/172 (75%)
Frame = +3
Query: 96 MLVIPPGLSEEEEXXXXXXXXXXXXXXXXXXXXXQSSSNTASQGGVKRSLSEQPVVDTAT 275
MLVIPPGLSEEEE QSSS ASQGGVKRSLSEQPVVDTAT
Sbjct: 1 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSGPASQGGVKRSLSEQPVVDTAT 60
Query: 276 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL 455
ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRS+SAD+DL
Sbjct: 61 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSMSADEDL 120
Query: 456 QESSRRPQRKSLYESFVSSSDRLRELXXXXXXXXXXXXXXXXXRSFDWGYEE 611
QE SRRPQRKSLYESFVSSSDRLREL R FDW YEE
Sbjct: 121 QEPSRRPQRKSLYESFVSSSDRLRELGQDGEEAEAPGAGDGPPRGFDWSYEE 172
Score = 176 bits (447), Expect = 3e-44
Identities = 92/132 (69%), Positives = 100/132 (75%), Gaps = 4/132 (3%)
Frame = +3
Query: 819 GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE 998
GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE
Sbjct: 240 GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE 299
Query: 999 KMESADQAVAELTGPRWNPCSSRSALPESSPCWMPPLASLSGAPWLSRIAL----KGCHR 1166
KMESADQAVAEL G + + + P L + +G +A+ KGCHR
Sbjct: 300 KMESADQAVAELNGTQVESVQLKVNIARKQPM----LDAATGKSVWGSLAVQNSPKGCHR 355
Query: 1167 XKRTQIVYSDDV 1202
KRTQIVYSDD+
Sbjct: 356 DKRTQIVYSDDL 367
>ref|NP_001039328.1| negative elongation factor E [Mus musculus].
Length = 367
Score = 234 bits (596), Expect = 1e-61
Identities = 127/172 (73%), Positives = 129/172 (75%)
Frame = +3
Query: 96 MLVIPPGLSEEEEXXXXXXXXXXXXXXXXXXXXXQSSSNTASQGGVKRSLSEQPVVDTAT 275
MLVIPPGLSEEEE QSSS ASQGGVKRSLSEQPVVDTAT
Sbjct: 1 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSGPASQGGVKRSLSEQPVVDTAT 60
Query: 276 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL 455
ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRS+SAD+DL
Sbjct: 61 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSMSADEDL 120
Query: 456 QESSRRPQRKSLYESFVSSSDRLRELXXXXXXXXXXXXXXXXXRSFDWGYEE 611
QE SRRPQRKSLYESFVSSSDRLREL R FDW YEE
Sbjct: 121 QEPSRRPQRKSLYESFVSSSDRLRELGQDGEEAEAPGAGDGPPRGFDWSYEE 172
Score = 176 bits (447), Expect = 3e-44
Identities = 92/132 (69%), Positives = 100/132 (75%), Gaps = 4/132 (3%)
Frame = +3
Query: 819 GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE 998
GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE
Sbjct: 240 GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE 299
Query: 999 KMESADQAVAELTGPRWNPCSSRSALPESSPCWMPPLASLSGAPWLSRIAL----KGCHR 1166
KMESADQAVAEL G + + + P L + +G +A+ KGCHR
Sbjct: 300 KMESADQAVAELNGTQVESVQLKVNIARKQPM----LDAATGKSVWGSLAVQNSPKGCHR 355
Query: 1167 XKRTQIVYSDDV 1202
KRTQIVYSDD+
Sbjct: 356 DKRTQIVYSDDL 367
>ref|NP_613046.2| negative elongation factor E [Mus musculus].
Length = 367
Score = 234 bits (596), Expect = 1e-61
Identities = 127/172 (73%), Positives = 129/172 (75%)
Frame = +3
Query: 96 MLVIPPGLSEEEEXXXXXXXXXXXXXXXXXXXXXQSSSNTASQGGVKRSLSEQPVVDTAT 275
MLVIPPGLSEEEE QSSS ASQGGVKRSLSEQPVVDTAT
Sbjct: 1 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSGPASQGGVKRSLSEQPVVDTAT 60
Query: 276 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL 455
ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRS+SAD+DL
Sbjct: 61 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSMSADEDL 120
Query: 456 QESSRRPQRKSLYESFVSSSDRLRELXXXXXXXXXXXXXXXXXRSFDWGYEE 611
QE SRRPQRKSLYESFVSSSDRLREL R FDW YEE
Sbjct: 121 QEPSRRPQRKSLYESFVSSSDRLRELGQDGEEAEAPGAGDGPPRGFDWSYEE 172
Score = 176 bits (447), Expect = 3e-44
Identities = 92/132 (69%), Positives = 100/132 (75%), Gaps = 4/132 (3%)
Frame = +3
Query: 819 GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE 998
GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE
Sbjct: 240 GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE 299
Query: 999 KMESADQAVAELTGPRWNPCSSRSALPESSPCWMPPLASLSGAPWLSRIAL----KGCHR 1166
KMESADQAVAEL G + + + P L + +G +A+ KGCHR
Sbjct: 300 KMESADQAVAELNGTQVESVQLKVNIARKQPM----LDAATGKSVWGSLAVQNSPKGCHR 355
Query: 1167 XKRTQIVYSDDV 1202
KRTQIVYSDD+
Sbjct: 356 DKRTQIVYSDDL 367
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,488,871
Number of extensions: 822105
Number of successful extensions: 3172
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3147
Number of HSP's successfully gapped: 6
Length of query: 423
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 319
Effective length of database: 12,493,815
Effective search space: 3985526985
Effective search space used: 3985526985
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002353
(1271 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095295.1| negative elongation factor E [Sus scrofa]. 247 1e-65
>ref|NP_001095295.1| negative elongation factor E [Sus scrofa].
Length = 378
Score = 247 bits (630), Expect = 1e-65
Identities = 134/172 (77%), Positives = 134/172 (77%)
Frame = +3
Query: 96 MLVIPPGLSEEEEXXXXXXXXXXXXXXXXXXXXXQSSSNTASQGGVKRSLSEQPVVDTAT 275
MLVIPPGLSEEEE QSSSNTASQGGVKRSLSEQPVVDTAT
Sbjct: 1 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSNTASQGGVKRSLSEQPVVDTAT 60
Query: 276 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL 455
ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL
Sbjct: 61 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL 120
Query: 456 QESSRRPQRKSLYESFVSSSDRLRELXXXXXXXXXXXXXXXXXRSFDWGYEE 611
QESSRRPQRKSLYESFVSSSDRLREL RSFDWGYEE
Sbjct: 121 QESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEE 172
Score = 195 bits (495), Expect = 5e-50
Identities = 101/141 (71%), Positives = 109/141 (77%), Gaps = 4/141 (2%)
Frame = +3
Query: 819 GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE 998
GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE
Sbjct: 242 GPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYE 301
Query: 999 KMESADQAVAELTGPRWNPCSSRSALPESSPCWMPPLASLSGAPWLSRIAL----KGCHR 1166
KMESADQAVAEL G + + ++ P L + +G +A+ KGCHR
Sbjct: 302 KMESADQAVAELNGTQVESVQLKVSIARKQPM----LDAATGKSVWGSLAVQNSPKGCHR 357
Query: 1167 XKRTQIVYSDDVYKENLVDXF 1229
KRTQIVYSDDVYKENLVD F
Sbjct: 358 DKRTQIVYSDDVYKENLVDGF 378
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,674,444
Number of extensions: 908851
Number of successful extensions: 2495
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2488
Number of HSP's successfully gapped: 2
Length of query: 423
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 321
Effective length of database: 8,804,438
Effective search space: 2826224598
Effective search space used: 2826224598
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002353
(1271 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 359 2e-96
>Sscrofa_Chr07
|| Length = 134764511
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 498 agcttcgtgtcatccagtgaccggcttcgggaactggggccagacggggaagaggcagag 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27768937 agcttcgtgtcatccagtgaccggcttcgggaactggggccagacggggaagaggcagag 27768996
Query: 558 ggcccaggggctggcgatggcccccctcgaagctttgactggggctacgaagaacgcggc 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27768997 ggcccaggggctggcgatggcccccctcgaagctttgactggggctacgaagaacgcggc 27769056
Query: 618 agcgcccgctcctcaacctcccctccccgaagccgcagccgggaccgcagtcgtgagcgg 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27769057 agcgcccgctcctcaacctcccctccccgaagccgcagccgggaccgcagtcgtgagcgg 27769116
Query: 678 a 678
|
Sbjct: 27769117 a 27769117
Score = 291 bits (147), Expect = 5e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 241 ctctgtcagagcagcccgtggtggacacggccacagcaactgagcaagcaaagcagctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27767772 ctctgtcagagcagcccgtggtggacacggccacagcaactgagcaagcaaagcagctgg 27767831
Query: 301 tgaagtcaggagccatcagtgccatcaaggccgagaccaagaactcgggcttcaaacgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27767832 tgaagtcaggagccatcagtgccatcaaggccgagaccaagaactcgggcttcaaacgtt 27767891
Query: 361 ctcgaactctagaggggaagttaaagg 387
|||||||||||||||||||||||||||
Sbjct: 27767892 ctcgaactctagaggggaagttaaagg 27767918
Score = 287 bits (145), Expect = 7e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 832 ggtcggactcgttccctgagcgccgggcccctcggaaggggaacactctctacgtctatg 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27769388 ggtcggactcgttccctgagcgccgggcccctcggaaggggaacactctctacgtctatg 27769447
Query: 892 gagaagacatgacacccacgcttctccgtggggccttctctccctttggaaacatcattg 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27769448 gagaagacatgacacccacgcttctccgtggggccttctctccctttggaaacatcattg 27769507
Query: 952 acctctccatggacccacccagaaa 976
|||||||||||||||||||||||||
Sbjct: 27769508 acctctccatggacccacccagaaa 27769532
Score = 218 bits (110), Expect = 6e-54
Identities = 138/144 (95%), Gaps = 3/144 (2%)
Strand = Plus / Plus
Query: 1126 ctccctggctgtccagaatagccctaaagggttgccaccggnacaagaggactcagattg 1185
|||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 27771355 ctccctagctgtccagaatagccctaa-gggttgccaccgggacaagaggactcagattg 27771413
Query: 1186 tctacagtgatgacgtctacaaggaaaaccttgtggacngctttcta-ggaatggagctg 1244
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct: 27771414 tctacagtgatgacgtctacaaggaaaaccttgtggacggc-ttctagggaatggagctg 27771472
Query: 1245 gattccgtgtgcctcacctgcccc 1268
||||||||||||||||||||||||
Sbjct: 27771473 gattccgtgtgcctcacctgcccc 27771496
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1035 acgggacccaggtggaatccgtgcagctcaaggtcagcattgcccgaaagcagcccatgc 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27769979 acgggacccaggtggaatccgtgcagctcaaggtcagcattgcccgaaagcagcccatgc 27770038
Query: 1095 tggatgccgccactggcaagtctgtctggggctccctgg 1133
|||||||||||||||||||||||||||||||||||||||
Sbjct: 27770039 tggatgccgccactggcaagtctgtctggggctccctgg 27770077
Score = 174 bits (88), Expect = 8e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ctcgctacgtcatcgctccgagccagcgatccgctgcccgcgcgggcgccgcccgagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27765292 ctcgctacgtcatcgctccgagccagcgatccgctgcccgcgcgggcgccgcccgagacc 27765351
Query: 61 gtggggctccggttgccgccccctcagg 88
||||||||||||||||||||||||||||
Sbjct: 27765352 gtggggctccggttgccgccccctcagg 27765379
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 85 caggagccaccatgttggtgataccccccggactgagcgaggaggaggaggctctgcaga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27765815 caggagccaccatgttggtgataccccccggactgagcgaggaggaggaggctctgcaga 27765874
Query: 145 agaaattcaacaaactcaagaaaaag 170
||||||||||||||||||||||||||
Sbjct: 27765875 agaaattcaacaaactcaagaaaaag 27765900
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 385 aggaccctgagaaggggccagtccccactttccagccgttccagcggagtatatctgccg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27768525 aggaccctgagaaggggccagtccccactttccagccgttccagcggagtatatctgccg 27768584
Query: 445 acgacgatctacaggag 461
|||||||||||||||||
Sbjct: 27768585 acgacgatctacaggag 27768601
Score = 135 bits (68), Expect = 7e-29
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 169 agaaaaaggcattgctggctctgaagaagcaaagcagcagcaacactgccagccaaggtg 228
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 27767599 agaaaaaggcattgctggctctgaagaagcaaagcagcagcagcactgccagccaaggtg 27767658
Query: 229 gtgtcaaacgct 240
||||||||||||
Sbjct: 27767659 gtgtcaaacgct 27767670
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 977 ctgtgccttcgtcacctatgaaaagatggagtcagcagatcaggccgttgctgag 1031
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27769687 ctgtgccttcgtcacctatgaaaagatggagtcagcagatcaggccgttgctgag 27769741
Score = 79.8 bits (40), Expect = 3e-12
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 460 agtcatccagacgtccccagaggaaatctctgtatgagag 499
||||||||||||||||||||||||||||||||||||||||
Sbjct: 27768720 agtcatccagacgtccccagaggaaatctctgtatgagag 27768759
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,854,646
Number of extensions: 255
Number of successful extensions: 255
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 11
Length of query: 1271
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1250
Effective length of database: 2,808,413,156
Effective search space: 3510516445000
Effective search space used: 3510516445000
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)