Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002355
(2076 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001165510.1| heterogeneous nuclear ribonucleoprotein G [B... 397 e-110
Alignment gi|NP_001040075.1| heterogeneous nuclear ribonucleoprotein G [B... 278 1e-74
Alignment gi|XP_001250252.1| PREDICTED: heterogeneous nuclear ribonucleop... 278 1e-74
Alignment gi|NP_001029450.1| cold-inducible RNA-binding protein [Bos taur... 108 2e-23
Alignment gi|NP_001029535.1| RNA binding motif protein 3 [Bos taurus]. 83 8e-16
Alignment gi|XP_002689220.1| PREDICTED: DAZ associated protein 1 [Bos tau... 69 1e-11
Alignment gi|NP_001029948.1| transformer-2 protein homolog beta [Bos taur... 69 2e-11
Alignment gi|NP_001179960.1| DAZ-associated protein 1 [Bos taurus]. 67 5e-11
Alignment gi|NP_001029490.1| serine/arginine-rich splicing factor 2 [Bos ... 67 5e-11
Alignment gi|XP_002704874.1| PREDICTED: DAZ associated protein 1 [Bos tau... 67 5e-11
>ref|NP_001165510.1| heterogeneous nuclear ribonucleoprotein G [Bos taurus].
Length = 391
Score = 397 bits (1021), Expect = e-110
Identities = 219/354 (61%), Positives = 219/354 (61%), Gaps = 1/354 (0%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
Query: 549 XXXXXX-HMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGR 725
HMDDGGYSMNFNMSSSRGPL RSSSGMGGR
Sbjct: 121 GPPSHGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR 180
Query: 726 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRD 905
APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK APPPRD
Sbjct: 181 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Query: 906 YTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPTRGP 1085
YTYRDYGHSSSRDDYP HPSGGSYRDSYESYGNSRSAPPTRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGP 300
Query: 1086 PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRQERGLPPSME 1247
PP VGRQERGLPPSME
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 354
>ref|NP_001040075.1| heterogeneous nuclear ribonucleoprotein G [Bos taurus].
Length = 396
Score = 278 bits (712), Expect = 1e-74
Identities = 157/305 (51%), Positives = 174/305 (57%), Gaps = 4/305 (1%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLN ET+EK+LEA FGKYGRI EVLLMKDRETNKSRGFAF+TFESPA
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAK A RDMNGKSLDGKAIKV QATKP+FE
Sbjct: 61 DAKAAVRDMNGKSLDGKAIKVAQATKPAFESGRRGPPLSRSRGRSRGLRGARGGGPRRPP 120
Query: 549 XXXXXXHMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXR---SSSGMG 719
DDGGY+ +F++ SR PL S GM
Sbjct: 121 SRGGP--ADDGGYAGDFDLRPSRAPLPMKRGPPPPRRAGPPPKRAAPSGPARSGSGGGMR 178
Query: 720 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPP 899
GRAP +RGRD Y GPPRR+P P RRD YL R+ GYS + AP P
Sbjct: 179 GRAPAARGRDGYEGPPRRDPPPPRRDPYLGSREGGYSPRDGYSSRDYSSARDARDFAPSP 238
Query: 900 RDYTYRDYGHSSSRDDYP-XXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPT 1076
R+YTYRDYGHSS+RD+ P HPSGGSYRD +ESYG+ RSA P
Sbjct: 239 REYTYRDYGHSSARDECPSRGYGDRDGYGGRDRDYADHPSGGSYRDPFESYGDPRSAAPA 298
Query: 1077 RGPPP 1091
RGPPP
Sbjct: 299 RGPPP 303
>ref|XP_001250252.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like [Bos
taurus].
Length = 396
Score = 278 bits (712), Expect = 1e-74
Identities = 157/305 (51%), Positives = 174/305 (57%), Gaps = 4/305 (1%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLN ET+EK+LEA FGKYGRI EVLLMKDRETNKSRGFAF+TFESPA
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAK A RDMNGKSLDGKAIKV QATKP+FE
Sbjct: 61 DAKAAVRDMNGKSLDGKAIKVAQATKPAFESGRRGPPLSRSRGRSRGLRGARGGGPRRPP 120
Query: 549 XXXXXXHMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXR---SSSGMG 719
DDGGY+ +F++ SR PL S GM
Sbjct: 121 SRGGP--ADDGGYAGDFDLRPSRAPLPMKRGPPPPRRAGPPPKRAAPSGPARSGSGGGMR 178
Query: 720 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPP 899
GRAP +RGRD Y GPPRR+P P RRD YL R+ GYS + AP P
Sbjct: 179 GRAPAARGRDGYEGPPRRDPPPPRRDPYLGSREGGYSPRDGYSSRDYSSARDARDFAPSP 238
Query: 900 RDYTYRDYGHSSSRDDYP-XXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPT 1076
R+YTYRDYGHSS+RD+ P HPSGGSYRD +ESYG+ RSA P
Sbjct: 239 REYTYRDYGHSSARDECPSRGYGDRDGYGGRDRDYADHPSGGSYRDPFESYGDPRSAAPA 298
Query: 1077 RGPPP 1091
RGPPP
Sbjct: 299 RGPPP 303
>ref|NP_001029450.1| cold-inducible RNA-binding protein [Bos taurus].
Length = 213
Score = 108 bits (270), Expect = 2e-23
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +3
Query: 198 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 377
A GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 378 DAARDMNGKSLDGKAIKVEQATKPS 452
DA MNGKS+DG+ I+V+QA K S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSS 86
>ref|NP_001029535.1| RNA binding motif protein 3 [Bos taurus].
Length = 90
Score = 83.2 bits (204), Expect = 8e-16
Identities = 38/69 (55%), Positives = 52/69 (75%)
Frame = +3
Query: 210 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 389
GKLF+GGLN T+E+ALE F +G I EV+++KDRET +SRGF F+TF +P A +A R
Sbjct: 6 GKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMR 65
Query: 390 DMNGKSLDG 416
MNG+ ++G
Sbjct: 66 AMNGEGVEG 74
>ref|XP_002689220.1| PREDICTED: DAZ associated protein 1 [Bos taurus].
Length = 444
Score = 69.3 bits (168), Expect = 1e-11
Identities = 36/96 (37%), Positives = 55/96 (57%)
Frame = +3
Query: 156 CHPSDLYQGRKMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSR 335
C S L +G V+ P KLF+GGL+ T ++ L + F +YG +V+ ++MKD+ TN+SR
Sbjct: 30 CFVSRLCKGGLAVDRIAPRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSR 89
Query: 336 GFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQAT 443
GF FV F+ P + +LDG+ I + T
Sbjct: 90 GFGFVKFKDP-NCVGTVLASRPHTLDGRNIDPKPCT 124
Score = 58.5 bits (140), Expect = 2e-08
Identities = 30/97 (30%), Positives = 53/97 (54%)
Frame = +3
Query: 150 DRCHPSDLYQGRKMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNK 329
+R P + +Q + + K+F+GG+ E L F K+G + EV+++ D E +
Sbjct: 131 ERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 190
Query: 330 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 440
RGF F+TFE + D A +M+ + GK ++V++A
Sbjct: 191 PRGFGFITFED-EQSVDQAVNMHFHDIMGKKVEVKRA 226
>ref|NP_001029948.1| transformer-2 protein homolog beta [Bos taurus].
Length = 288
Score = 68.9 bits (167), Expect = 2e-11
Identities = 34/73 (46%), Positives = 49/73 (67%)
Frame = +3
Query: 216 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 395
L + GL+ T E+ L VF KYG I +V ++ D+++ +SRGFAFV FE+ DAK+A
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 396 NGKSLDGKAIKVE 434
NG LDG+ I+V+
Sbjct: 180 NGMELDGRRIRVD 192
>ref|NP_001179960.1| DAZ-associated protein 1 [Bos taurus].
Length = 406
Score = 67.4 bits (163), Expect = 5e-11
Identities = 33/82 (40%), Positives = 50/82 (60%)
Frame = +3
Query: 198 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 377
AD GKLF+GGL+ T ++ L + F +YG +V+ ++MKD+ TN+SRGF FV F+ P +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCV 64
Query: 378 DAARDMNGKSLDGKAIKVEQAT 443
+LDG+ I + T
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCT 86
Score = 58.5 bits (140), Expect = 2e-08
Identities = 30/97 (30%), Positives = 53/97 (54%)
Frame = +3
Query: 150 DRCHPSDLYQGRKMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNK 329
+R P + +Q + + K+F+GG+ E L F K+G + EV+++ D E +
Sbjct: 93 ERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 152
Query: 330 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 440
RGF F+TFE + D A +M+ + GK ++V++A
Sbjct: 153 PRGFGFITFED-EQSVDQAVNMHFHDIMGKKVEVKRA 188
>ref|NP_001029490.1| serine/arginine-rich splicing factor 2 [Bos taurus].
Length = 221
Score = 67.4 bits (163), Expect = 5e-11
Identities = 35/87 (40%), Positives = 50/87 (57%)
Frame = +3
Query: 180 GRKMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFE 359
GR + + L + L T+ L VF KYGR+ +V + +DR T +SRGFAFV F
Sbjct: 4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63
Query: 360 SPADAKDAARDMNGKSLDGKAIKVEQA 440
DA+DA M+G LDG+ ++V+ A
Sbjct: 64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90
>ref|XP_002704874.1| PREDICTED: DAZ associated protein 1 [Bos taurus].
Length = 378
Score = 67.4 bits (163), Expect = 5e-11
Identities = 33/82 (40%), Positives = 50/82 (60%)
Frame = +3
Query: 198 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 377
AD GKLF+GGL+ T ++ L + F +YG +V+ ++MKD+ TN+SRGF FV F+ P +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCV 64
Query: 378 DAARDMNGKSLDGKAIKVEQAT 443
+LDG+ I + T
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCT 86
Score = 58.5 bits (140), Expect = 2e-08
Identities = 30/97 (30%), Positives = 53/97 (54%)
Frame = +3
Query: 150 DRCHPSDLYQGRKMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNK 329
+R P + +Q + + K+F+GG+ E L F K+G + EV+++ D E +
Sbjct: 93 ERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 152
Query: 330 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 440
RGF F+TFE + D A +M+ + GK ++V++A
Sbjct: 153 PRGFGFITFED-EQSVDQAVNMHFHDIMGKKVEVKRA 188
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,414,598
Number of extensions: 1316756
Number of successful extensions: 3908
Number of sequences better than 1.0e-05: 105
Number of HSP's gapped: 3847
Number of HSP's successfully gapped: 141
Length of query: 692
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 583
Effective length of database: 14,074,782
Effective search space: 8205597906
Effective search space used: 8205597906
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002355
(2076 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853786.1| PREDICTED: similar to Heterogeneous nuclear rib... 376 e-171
Alignment gi|XP_866434.1| PREDICTED: similar to Heterogeneous nuclear rib... 397 e-110
Alignment gi|XP_852809.1| PREDICTED: similar to Heterogeneous nuclear rib... 397 e-110
Alignment gi|XP_866411.1| PREDICTED: similar to Heterogeneous nuclear rib... 358 1e-98
Alignment gi|XP_866389.1| PREDICTED: similar to Heterogeneous nuclear rib... 358 1e-98
Alignment gi|XP_866399.1| PREDICTED: similar to Heterogeneous nuclear rib... 288 1e-77
Alignment gi|XP_866424.1| PREDICTED: similar to Heterogeneous nuclear rib... 238 1e-62
Alignment gi|XP_868602.1| PREDICTED: similar to cold inducible RNA bindin... 110 5e-24
Alignment gi|XP_868601.1| PREDICTED: similar to cold inducible RNA bindin... 108 2e-23
Alignment gi|XP_868600.1| PREDICTED: similar to cold inducible RNA bindin... 108 2e-23
>ref|XP_853786.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43) [Canis familiaris].
Length = 588
Score = 376 bits (966), Expect(2) = e-171
Identities = 205/315 (65%), Positives = 207/315 (65%), Gaps = 1/315 (0%)
Frame = +3
Query: 150 DRCHPSDLYQGRKMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNK 329
+R P L G KMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNK
Sbjct: 107 ERLSPLRLSPGGKMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNK 166
Query: 330 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXX 509
SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 167 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 226
Query: 510 XXXXXXXXXXXXXXXXXXX-HMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXX 686
HMDDGGYSMNFNMSSSRGPL
Sbjct: 227 GLRGGRGGSRGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRTGGPPPKRSAP 286
Query: 687 XXXXRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXX 866
RSSS MGGRAPVS GRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK
Sbjct: 287 SGPVRSSSRMGGRAPVSCGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPS 346
Query: 867 XXXXXXXAPPPRDYTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYES 1046
APPPRDYTY DYGHSSSRDDYP HPSGGSYR+SYES
Sbjct: 347 SRDTRDYAPPPRDYTYCDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRNSYES 406
Query: 1047 YGNSRSAPPTRGPPP 1091
YGNS SAPPTRGP P
Sbjct: 407 YGNSHSAPPTRGPLP 421
Score = 247 bits (631), Expect(2) = e-171
Identities = 128/167 (76%), Positives = 132/167 (79%), Gaps = 2/167 (1%)
Frame = +1
Query: 1090 HLMVEAVAMMITAAHVTDMXXXXXXXXXXXXISTQVVVIGLADKKEGFPLLWKGGTLLHE 1269
HLMVEAVAMMITAAHVTDM ISTQVVVIGLADKKEGFPLLWKGGTLLH
Sbjct: 422 HLMVEAVAMMITAAHVTDMVEVQTVTQAAEVISTQVVVIGLADKKEGFPLLWKGGTLLHV 481
Query: 1270 IPTXXXXXXXXXXXXXXXXDLIEGEAEADIKKQTKLWTKIPVQRNK-QKWNLFCHNYPRT 1446
IPT DLIEGEAEADIK +TKLWTKIPVQR + +KWNLFCHNYPRT
Sbjct: 482 IPTAVQAVEHQEVVAVEEADLIEGEAEADIKNKTKLWTKIPVQRKQTKKWNLFCHNYPRT 541
Query: 1447 TKRKNCVTFLKFPVKFPFHNFYVLVRKKVK-CLILFDFMTLLSISKC 1584
T RKNCVTFLKFPVKFPFHNFYVLVR+K K CLILFDFMTLLSISKC
Sbjct: 542 TNRKNCVTFLKFPVKFPFHNFYVLVREKSKTCLILFDFMTLLSISKC 588
>ref|XP_866434.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43) isoform 6 [Canis familiaris].
Length = 391
Score = 397 bits (1021), Expect = e-110
Identities = 219/354 (61%), Positives = 219/354 (61%), Gaps = 1/354 (0%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
Query: 549 XXXXXX-HMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGR 725
HMDDGGYSMNFNMSSSRGPL RSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR 180
Query: 726 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRD 905
APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK APPPRD
Sbjct: 181 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Query: 906 YTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPTRGP 1085
YTYRDYGHSSSRDDYP HPSGGSYRDSYESYGNSRSAPPTRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGP 300
Query: 1086 PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRQERGLPPSME 1247
PP VGRQERGLPPSME
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 354
>ref|XP_852809.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43) isoform 1 [Canis familiaris].
Length = 391
Score = 397 bits (1021), Expect = e-110
Identities = 219/354 (61%), Positives = 219/354 (61%), Gaps = 1/354 (0%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
Query: 549 XXXXXX-HMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGR 725
HMDDGGYSMNFNMSSSRGPL RSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR 180
Query: 726 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRD 905
APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK APPPRD
Sbjct: 181 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Query: 906 YTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPTRGP 1085
YTYRDYGHSSSRDDYP HPSGGSYRDSYESYGNSRSAPPTRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGP 300
Query: 1086 PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRQERGLPPSME 1247
PP VGRQERGLPPSME
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 354
>ref|XP_866411.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43) isoform 4 [Canis familiaris].
Length = 296
Score = 358 bits (918), Expect = 1e-98
Identities = 193/289 (66%), Positives = 193/289 (66%), Gaps = 1/289 (0%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
Query: 549 XXXXXX-HMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGR 725
HMDDGGYSMNFNMSSSRGPL RSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR 180
Query: 726 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRD 905
APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK APPPRD
Sbjct: 181 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Query: 906 YTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYG 1052
YTYRDYGHSSSRDDYP HPSGGSYRDSYESYG
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYG 289
>ref|XP_866389.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43) isoform 2 [Canis familiaris].
Length = 289
Score = 358 bits (918), Expect = 1e-98
Identities = 193/289 (66%), Positives = 193/289 (66%), Gaps = 1/289 (0%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
Query: 549 XXXXXX-HMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGR 725
HMDDGGYSMNFNMSSSRGPL RSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR 180
Query: 726 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRD 905
APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK APPPRD
Sbjct: 181 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Query: 906 YTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYG 1052
YTYRDYGHSSSRDDYP HPSGGSYRDSYESYG
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYG 289
>ref|XP_866399.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43) isoform 3 [Canis familiaris].
Length = 220
Score = 288 bits (737), Expect = 1e-77
Identities = 156/217 (71%), Positives = 156/217 (71%), Gaps = 1/217 (0%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFE-XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 545
DAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
Query: 546 XXXXXXXHMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGR 725
HMDDGGYSMNFNMSSSRGPL RSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR 180
Query: 726 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK 836
APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK
Sbjct: 181 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK 217
>ref|XP_866424.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G
(hnRNP G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43) isoform 5 [Canis familiaris].
Length = 263
Score = 238 bits (608), Expect = 1e-62
Identities = 128/226 (56%), Positives = 128/226 (56%)
Frame = +3
Query: 570 MDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGRAPVSRGRD 749
MDDGGYSMNFNMSSSRGPL RSSSGMGGRAPVSRGRD
Sbjct: 1 MDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRD 60
Query: 750 SYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRDYTYRDYGH 929
SYGGPPRREPLPSRRDVYLSPRDDGYSTK APPPRDYTYRDYGH
Sbjct: 61 SYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGH 120
Query: 930 SSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPTRGPPPXXXXXX 1109
SSSRDDYP HPSGGSYRDSYESYGNSRSAPPTRGPPP
Sbjct: 121 SSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSS 180
Query: 1110 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRQERGLPPSME 1247
VGRQERGLPPSME
Sbjct: 181 RYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 226
>ref|XP_868602.1| PREDICTED: similar to cold inducible RNA binding protein isoform 4
[Canis familiaris].
Length = 219
Score = 110 bits (275), Expect = 5e-24
Identities = 55/96 (57%), Positives = 74/96 (77%)
Frame = +3
Query: 165 SDLYQGRKMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFA 344
S + G+ + +D GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF
Sbjct: 39 SQAHHGKATMASDE-GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFG 97
Query: 345 FVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPS 452
FVTFE+ DAKDA MNGKS+DG+ I+V+QA K S
Sbjct: 98 FVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 133
>ref|XP_868601.1| PREDICTED: similar to cold inducible RNA binding protein isoform 3
[Canis familiaris].
Length = 164
Score = 108 bits (270), Expect = 2e-23
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +3
Query: 198 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 377
A GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 378 DAARDMNGKSLDGKAIKVEQATKPS 452
DA MNGKS+DG+ I+V+QA K S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSS 86
>ref|XP_868600.1| PREDICTED: similar to cold inducible RNA binding protein isoform 2
[Canis familiaris].
Length = 185
Score = 108 bits (270), Expect = 2e-23
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +3
Query: 198 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 377
A GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 378 DAARDMNGKSLDGKAIKVEQATKPS 452
DA MNGKS+DG+ I+V+QA K S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSS 86
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 62,302,306
Number of extensions: 1369710
Number of successful extensions: 5189
Number of sequences better than 1.0e-05: 346
Number of HSP's gapped: 4988
Number of HSP's successfully gapped: 503
Length of query: 692
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 582
Effective length of database: 15,207,544
Effective search space: 8850790608
Effective search space used: 8850790608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002355
(2076 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002130.2| heterogeneous nuclear ribonucleoprotein G isofo... 397 e-110
Alignment gi|NP_001156008.1| heterogeneous nuclear ribonucleoprotein G-li... 384 e-106
Alignment gi|NP_062556.2| heterogeneous nuclear ribonucleoprotein G-like ... 384 e-106
Alignment gi|NP_055284.3| RNA-binding motif protein, X-linked-like-2 [Hom... 272 1e-72
Alignment gi|NP_001006120.2| RNA-binding motif protein, Y chromosome, fam... 201 3e-51
Alignment gi|NP_001006118.2| RNA-binding motif protein, Y chromosome, fam... 201 3e-51
Alignment gi|NP_001006121.1| RNA-binding motif protein, Y chromosome, fam... 201 3e-51
Alignment gi|NP_005049.1| RNA-binding motif protein, Y chromosome, family... 201 3e-51
Alignment gi|NP_001006117.2| RNA-binding motif protein, Y chromosome, fam... 198 1e-50
Alignment gi|NP_689798.1| RNA-binding motif protein, Y chromosome, family... 198 1e-50
>ref|NP_002130.2| heterogeneous nuclear ribonucleoprotein G isoform 1 [Homo sapiens].
Length = 391
Score = 397 bits (1021), Expect = e-110
Identities = 219/354 (61%), Positives = 219/354 (61%), Gaps = 1/354 (0%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
Query: 549 XXXXXX-HMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGR 725
HMDDGGYSMNFNMSSSRGPL RSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR 180
Query: 726 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRD 905
APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK APPPRD
Sbjct: 181 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Query: 906 YTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPTRGP 1085
YTYRDYGHSSSRDDYP HPSGGSYRDSYESYGNSRSAPPTRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGP 300
Query: 1086 PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRQERGLPPSME 1247
PP VGRQERGLPPSME
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 354
>ref|NP_001156008.1| heterogeneous nuclear ribonucleoprotein G-like 1 [Homo sapiens].
Length = 390
Score = 384 bits (985), Expect = e-106
Identities = 214/354 (60%), Positives = 217/354 (61%), Gaps = 1/354 (0%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLNTETNEKALE VFGKYGRIVEVLL+KDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
Query: 549 XXXXXX-HMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGR 725
HMDDGGYSMNFNMSSSRGPL RSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
Query: 726 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRD 905
AP+SRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK APPPRD
Sbjct: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Query: 906 YTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPTRGP 1085
YTYRDYGHSSSRDDYP HPSGGSYRDSYESYGNSRSAP TRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP 300
Query: 1086 PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRQERGLPPSME 1247
PP VGRQERGLPPS+E
Sbjct: 301 PP-SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVE 353
>ref|NP_062556.2| heterogeneous nuclear ribonucleoprotein G-like 1 [Homo sapiens].
Length = 390
Score = 384 bits (985), Expect = e-106
Identities = 214/354 (60%), Positives = 217/354 (61%), Gaps = 1/354 (0%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLNTETNEKALE VFGKYGRIVEVLL+KDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
Query: 549 XXXXXX-HMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGR 725
HMDDGGYSMNFNMSSSRGPL RSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
Query: 726 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRD 905
AP+SRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK APPPRD
Sbjct: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Query: 906 YTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPTRGP 1085
YTYRDYGHSSSRDDYP HPSGGSYRDSYESYGNSRSAP TRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP 300
Query: 1086 PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRQERGLPPSME 1247
PP VGRQERGLPPS+E
Sbjct: 301 PP-SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVE 353
>ref|NP_055284.3| RNA-binding motif protein, X-linked-like-2 [Homo sapiens].
Length = 392
Score = 272 bits (695), Expect = 1e-72
Identities = 158/303 (52%), Positives = 173/303 (57%), Gaps = 2/303 (0%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLN ET+EKALEA FGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAK AARDMNGKSLDGKAIKV QATKP+FE
Sbjct: 61 DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRR 120
Query: 549 XXXXXXHMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSS-SGMGGR 725
DDGGY+ +F++ SR P+ RSS GM GR
Sbjct: 121 SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGR 180
Query: 726 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRD 905
A RGRD Y GPPRREPLP RRD YL PRD+GYS++ AP P +
Sbjct: 181 ALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSR---DGYSSRDYREPRGFAPSPGE 237
Query: 906 YTYRDYGHSSSRDDYP-XXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPTRG 1082
YT+RDYGHSS RDD P H S GS+R+ +ESYG R A P RG
Sbjct: 238 YTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGRG 297
Query: 1083 PPP 1091
PP
Sbjct: 298 TPP 300
>ref|NP_001006120.2| RNA-binding motif protein, Y chromosome, family 1 member D [Homo
sapiens].
Length = 496
Score = 201 bits (510), Expect = 3e-51
Identities = 134/317 (42%), Positives = 162/317 (51%), Gaps = 19/317 (5%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEAD PGKLFIGGLN ETNEK L+AVFGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFE---XXXXXXXXXXXXXXXXXXXXXXXXXXX 539
DAK+AA+DMNGKSL GKAIKVEQA KPSF+
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
Query: 540 XXXXXXXXXHMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMG 719
H+DDGGY+ + MS SRG + RS+S MG
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 720 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPP 899
+ P+S+ R++YG PPRR + S R+ +S R DGY+T APP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATN----DGNHPSCQETRDYAPPS 235
Query: 900 RDYTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRD--------SY-ESYG 1052
R Y YRD GH S+RD++ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 1053 NSRS-------APPTRG 1082
N RS APP+RG
Sbjct: 295 NRRSSRETREYAPPSRG 311
Score = 57.4 bits (137), Expect = 5e-08
Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 888 APPPRDYTYRDYGHSS-SRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRS 1064
APP RDY YRDYGHSS H SG SYRD+ + YG S
Sbjct: 343 APPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHG 402
Query: 1065 APPTRGP 1085
APP RGP
Sbjct: 403 APPARGP 409
>ref|NP_001006118.2| RNA-binding motif protein, Y chromosome, family 1 member E [Homo
sapiens].
Length = 496
Score = 201 bits (510), Expect = 3e-51
Identities = 134/317 (42%), Positives = 162/317 (51%), Gaps = 19/317 (5%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEAD PGKLFIGGLN ETNEK L+AVFGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFE---XXXXXXXXXXXXXXXXXXXXXXXXXXX 539
DAK+AA+DMNGKSL GKAIKVEQA KPSF+
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
Query: 540 XXXXXXXXXHMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMG 719
H+DDGGY+ + MS SRG + RS+S MG
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 720 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPP 899
+ P+S+ R++YG PPRR + S R+ +S R DGY+T APP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATN----DGNHPSCQETRDYAPPS 235
Query: 900 RDYTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRD--------SY-ESYG 1052
R Y YRD GH S+RD++ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 1053 NSRS-------APPTRG 1082
N RS APP+RG
Sbjct: 295 NRRSSRETREYAPPSRG 311
Score = 56.2 bits (134), Expect = 1e-07
Identities = 29/67 (43%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 888 APPPRDYTYRDYGHSS-SRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRS 1064
APP RDY YRDYGHSS H SG SYRD+ + YG +
Sbjct: 343 APPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTAHG 402
Query: 1065 APPTRGP 1085
APP RGP
Sbjct: 403 APPARGP 409
>ref|NP_001006121.1| RNA-binding motif protein, Y chromosome, family 1 member B [Homo
sapiens].
Length = 496
Score = 201 bits (510), Expect = 3e-51
Identities = 134/317 (42%), Positives = 162/317 (51%), Gaps = 19/317 (5%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEAD PGKLFIGGLN ETNEK L+AVFGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFE---XXXXXXXXXXXXXXXXXXXXXXXXXXX 539
DAK+AA+DMNGKSL GKAIKVEQA KPSF+
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
Query: 540 XXXXXXXXXHMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMG 719
H+DDGGY+ + MS SRG + RS+S MG
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 720 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPP 899
+ P+S+ R++YG PPRR + S R+ +S R DGY+T APP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATN----DGNHPSCQETRDYAPPS 235
Query: 900 RDYTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRD--------SY-ESYG 1052
R Y YRD GH S+RD++ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 1053 NSRS-------APPTRG 1082
N RS APP+RG
Sbjct: 295 NRRSSRETREYAPPSRG 311
Score = 57.4 bits (137), Expect = 5e-08
Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 888 APPPRDYTYRDYGHSS-SRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRS 1064
APP RDY YRDYGHSS H SG SYRD+ + YG S
Sbjct: 343 APPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHG 402
Query: 1065 APPTRGP 1085
APP RGP
Sbjct: 403 APPARGP 409
>ref|NP_005049.1| RNA-binding motif protein, Y chromosome, family 1 member A1/C [Homo
sapiens].
Length = 496
Score = 201 bits (510), Expect = 3e-51
Identities = 134/317 (42%), Positives = 162/317 (51%), Gaps = 19/317 (5%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEAD PGKLFIGGLN ETNEK L+AVFGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFE---XXXXXXXXXXXXXXXXXXXXXXXXXXX 539
DAK+AA+DMNGKSL GKAIKVEQA KPSF+
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
Query: 540 XXXXXXXXXHMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMG 719
H+DDGGY+ + MS SRG + RS+S MG
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 720 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPP 899
+ P+S+ R++YG PPRR + S R+ +S R DGY+T APP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATN----DGNHPSCQETRDYAPPS 235
Query: 900 RDYTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRD--------SY-ESYG 1052
R Y YRD GH S+RD++ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 1053 NSRS-------APPTRG 1082
N RS APP+RG
Sbjct: 295 NRRSSRETREYAPPSRG 311
Score = 57.4 bits (137), Expect = 5e-08
Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 888 APPPRDYTYRDYGHSS-SRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRS 1064
APP RDY YRDYGHSS H SG SYRD+ + YG S
Sbjct: 343 APPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHG 402
Query: 1065 APPTRGP 1085
APP RGP
Sbjct: 403 APPARGP 409
>ref|NP_001006117.2| RNA-binding motif protein, Y chromosome, family 1 member F/J [Homo
sapiens].
Length = 496
Score = 198 bits (504), Expect = 1e-50
Identities = 133/317 (41%), Positives = 161/317 (50%), Gaps = 19/317 (5%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEAD PGKLFIGGLN ETNEK L+AVFGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFE---XXXXXXXXXXXXXXXXXXXXXXXXXXX 539
DAK+AA+DMNG SL GKAIKVEQA KPSF+
Sbjct: 60 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119
Query: 540 XXXXXXXXXHMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMG 719
H+DDGGY+ + MS SRG + RS+S MG
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 720 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPP 899
+ P+S+ R++YG PPRR + S R+ +S R DGY+T APP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATN----DGNHPSCQETRDYAPPS 235
Query: 900 RDYTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRD--------SY-ESYG 1052
R Y YRD GH S+RD++ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 1053 NSRS-------APPTRG 1082
N RS APP+RG
Sbjct: 295 NHRSSRETREYAPPSRG 311
Score = 57.4 bits (137), Expect = 5e-08
Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 888 APPPRDYTYRDYGHSS-SRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRS 1064
APP RDY YRDYGHSS H SG SYRD+ + YG S
Sbjct: 343 APPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHG 402
Query: 1065 APPTRGP 1085
APP RGP
Sbjct: 403 APPARGP 409
>ref|NP_689798.1| RNA-binding motif protein, Y chromosome, family 1 member F/J [Homo
sapiens].
Length = 496
Score = 198 bits (504), Expect = 1e-50
Identities = 133/317 (41%), Positives = 161/317 (50%), Gaps = 19/317 (5%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEAD PGKLFIGGLN ETNEK L+AVFGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFE---XXXXXXXXXXXXXXXXXXXXXXXXXXX 539
DAK+AA+DMNG SL GKAIKVEQA KPSF+
Sbjct: 60 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119
Query: 540 XXXXXXXXXHMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMG 719
H+DDGGY+ + MS SRG + RS+S MG
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 720 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPP 899
+ P+S+ R++YG PPRR + S R+ +S R DGY+T APP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATN----DGNHPSCQETRDYAPPS 235
Query: 900 RDYTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRD--------SY-ESYG 1052
R Y YRD GH S+RD++ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 1053 NSRS-------APPTRG 1082
N RS APP+RG
Sbjct: 295 NHRSSRETREYAPPSRG 311
Score = 57.4 bits (137), Expect = 5e-08
Identities = 30/67 (44%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 888 APPPRDYTYRDYGHSS-SRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRS 1064
APP RDY YRDYGHSS H SG SYRD+ + YG S
Sbjct: 343 APPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHG 402
Query: 1065 APPTRGP 1085
APP RGP
Sbjct: 403 APPARGP 409
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,024,194
Number of extensions: 1346302
Number of successful extensions: 4430
Number of sequences better than 1.0e-05: 144
Number of HSP's gapped: 4312
Number of HSP's successfully gapped: 205
Length of query: 692
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 583
Effective length of database: 14,704,088
Effective search space: 8572483304
Effective search space used: 8572483304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002355
(2076 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001160095.1| RNA binding motif protein, X-linked [Mus mus... 392 e-109
Alignment gi|NP_035382.1| RNA binding motif protein, X-linked [Mus muscul... 392 e-109
Alignment gi|NP_033059.2| heterogeneous nuclear ribonucleoprotein G [Mus ... 391 e-108
Alignment gi|NP_083936.1| RNA-binding motif protein, X-linked-like-2 [Mus... 290 4e-78
Alignment gi|XP_001475856.1| PREDICTED: RNA-binding motif protein, Y chro... 150 3e-36
Alignment gi|XP_001478418.1| PREDICTED: RNA-binding motif protein, Y chro... 147 4e-35
Alignment gi|XP_001478396.1| PREDICTED: RNA-binding motif protein, Y chro... 147 4e-35
Alignment gi|NP_035383.2| RNA-binding motif protein, Y chromosome, family... 145 2e-34
Alignment gi|NP_001159856.1| RNA-binding motif protein, Y chromosome, fam... 145 2e-34
Alignment gi|XP_001478357.1| PREDICTED: RNA-binding motif protein, Y chro... 144 2e-34
>ref|NP_001160095.1| RNA binding motif protein, X-linked [Mus musculus].
Length = 391
Score = 392 bits (1008), Expect = e-109
Identities = 216/354 (61%), Positives = 217/354 (61%), Gaps = 1/354 (0%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGLPPPPRSRGPPRGLRGGRGGSGGTR 120
Query: 549 XXXXXX-HMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGR 725
HMDDGGYSMNF MSSSRGPL RSSSG+GGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFTMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGLGGR 180
Query: 726 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRD 905
APVSRGRD YGGPPRREPLPSRRDVYLSPRDDGYSTK APPPRD
Sbjct: 181 APVSRGRDGYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSREYPSSRDTRDYAPPPRD 240
Query: 906 YTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPTRGP 1085
YTYRDYGHSSSRDDYP HPSGGSYRDSYESYGNSRSAPPTRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGP 300
Query: 1086 PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRQERGLPPSME 1247
PP VGRQERGLPPSME
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 354
>ref|NP_035382.1| RNA binding motif protein, X-linked [Mus musculus].
Length = 391
Score = 392 bits (1008), Expect = e-109
Identities = 216/354 (61%), Positives = 217/354 (61%), Gaps = 1/354 (0%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGLPPPPRSRGPPRGLRGGRGGSGGTR 120
Query: 549 XXXXXX-HMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGR 725
HMDDGGYSMNF MSSSRGPL RSSSG+GGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFTMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGLGGR 180
Query: 726 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRD 905
APVSRGRD YGGPPRREPLPSRRDVYLSPRDDGYSTK APPPRD
Sbjct: 181 APVSRGRDGYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSREYPSSRDTRDYAPPPRD 240
Query: 906 YTYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPTRGP 1085
YTYRDYGHSSSRDDYP HPSGGSYRDSYESYGNSRSAPPTRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGP 300
Query: 1086 PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRQERGLPPSME 1247
PP VGRQERGLPPSME
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 354
>ref|NP_033059.2| heterogeneous nuclear ribonucleoprotein G [Mus musculus].
Length = 388
Score = 391 bits (1005), Expect = e-108
Identities = 215/353 (60%), Positives = 217/353 (61%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVE+LLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGSGGTRGPP 120
Query: 549 XXXXXXHMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGRA 728
+MDDGGYSMNFNMSSSRGPL RSSSGMGGR
Sbjct: 121 SRGG--YMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSTPSGPVRSSSGMGGRT 178
Query: 729 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRDY 908
PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK APPPRDY
Sbjct: 179 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDY 238
Query: 909 TYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPTRGPP 1088
TYRDY HSSSRDDYP HPSGGSYRDSYESYGNSRSAPPTRGPP
Sbjct: 239 TYRDYSHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPP 298
Query: 1089 PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRQERGLPPSME 1247
P VGRQERGLPPSME
Sbjct: 299 PSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 351
>ref|NP_083936.1| RNA-binding motif protein, X-linked-like-2 [Mus musculus].
Length = 385
Score = 290 bits (741), Expect = 4e-78
Identities = 167/353 (47%), Positives = 187/353 (52%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLN ET+EK LE FGKYGRI+EVLLMKDRET+KSRGFAFVTFE+PA
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKGLETAFGKYGRIIEVLLMKDRETSKSRGFAFVTFENPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAK AARDMNGKSLDGKAIKV QATKP FE
Sbjct: 61 DAKAAARDMNGKSLDGKAIKVAQATKPVFE--SGRRGPPPPRSRGRPRGLRGTRGGGPRR 118
Query: 549 XXXXXXHMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGRA 728
D+GGY+ +F++ SR P+ RS +G+ GRA
Sbjct: 119 PPSRGGSADEGGYTGDFDLRPSRAPMPLKRGPPPRRAGPPPKRAAPSGPARSGAGIRGRA 178
Query: 729 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRDY 908
SRGRD YGGPPRRE P RRD YL PRD+GYS + AP PRDY
Sbjct: 179 AGSRGRDGYGGPPRRELPPPRRDPYLGPRDEGYSPRESYSSRDYPSARDPRDFAPSPRDY 238
Query: 909 TYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPTRGPP 1088
TYRDYGHSS+RD+ P HPSGGSYRD ++SYG+ R A P RGPP
Sbjct: 239 TYRDYGHSSARDECPSRGYCERDGYGGRERDYEHPSGGSYRDPFDSYGDPRGAGPARGPP 298
Query: 1089 PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRQERGLPPSME 1247
P VGR ERGLPPS+E
Sbjct: 299 P----SYGGGRYDEYRGCSPDGYGGRDSYRSERYSSGRERVGRPERGLPPSVE 347
>ref|XP_001475856.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
B-like isoform 2 [Mus musculus].
Length = 380
Score = 150 bits (380), Expect = 3e-36
Identities = 105/303 (34%), Positives = 135/303 (44%), Gaps = 5/303 (1%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
M E D+PGK+FIGGLN +T +K L+ +FG++G + V+LM+DRET KSRGFAF+TF PA
Sbjct: 1 MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKP-SFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 545
DAK+A ++MNG LDGK IKV+QA +P S E
Sbjct: 61 DAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSR 120
Query: 546 XXXXXXXHMDDGG--YSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMG 719
+ GG Y+ NFN+SSS RS++G+
Sbjct: 121 ARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDGPPSKRSATSAQTRSNTGLR 180
Query: 720 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPP 899
GR P R+ PR EP SRRD Y PRD G S+
Sbjct: 181 GREP--HRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRG----------- 227
Query: 900 RDYTYRDYGHSSSRDD--YPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPP 1073
Y DYG+ SR++ + SG SYRD+Y SYG AP
Sbjct: 228 ----YCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPS 283
Query: 1074 TRG 1082
RG
Sbjct: 284 ARG 286
>ref|XP_001478418.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
A1-like isoform 2 [Mus musculus].
Length = 380
Score = 147 bits (370), Expect = 4e-35
Identities = 104/303 (34%), Positives = 134/303 (44%), Gaps = 5/303 (1%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
M E D+PGK+FIGGLN +T +K L+ +FG++G + V+LM+DRET KSRGFAF+TF A
Sbjct: 1 MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKP-SFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 545
DAK+A ++MNG LDGK IKV+QA +P S E
Sbjct: 61 DAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSR 120
Query: 546 XXXXXXXHMDDGG--YSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMG 719
+ GG Y+ NFN+SSS RS++G+
Sbjct: 121 ARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLR 180
Query: 720 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPP 899
GR P R+ PR EP SRRD Y PRD G S+
Sbjct: 181 GREP--HRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRG----------- 227
Query: 900 RDYTYRDYGHSSSRDD--YPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPP 1073
Y DYG+ SR++ + SG SYRD+Y SYG AP
Sbjct: 228 ----YCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPS 283
Query: 1074 TRG 1082
RG
Sbjct: 284 ARG 286
>ref|XP_001478396.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
A1-like isoform 2 [Mus musculus].
Length = 380
Score = 147 bits (370), Expect = 4e-35
Identities = 104/303 (34%), Positives = 134/303 (44%), Gaps = 5/303 (1%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
M E D+PGK+FIGGLN +T +K L+ +FG++G + V+LM+DRET KSRGFAF+TF A
Sbjct: 1 MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKP-SFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 545
DAK+A ++MNG LDGK IKV+QA +P S E
Sbjct: 61 DAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSR 120
Query: 546 XXXXXXXHMDDGG--YSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMG 719
+ GG Y+ NFN+SSS RS++G+
Sbjct: 121 ARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLR 180
Query: 720 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPP 899
GR P R+ PR EP SRRD Y PRD G S+
Sbjct: 181 GREP--HRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRG----------- 227
Query: 900 RDYTYRDYGHSSSRDD--YPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPP 1073
Y DYG+ SR++ + SG SYRD+Y SYG AP
Sbjct: 228 ----YCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPS 283
Query: 1074 TRG 1082
RG
Sbjct: 284 ARG 286
>ref|NP_035383.2| RNA-binding motif protein, Y chromosome, family 1 member B [Mus
musculus].
Length = 380
Score = 145 bits (365), Expect = 2e-34
Identities = 103/303 (33%), Positives = 134/303 (44%), Gaps = 5/303 (1%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
M E ++PGK+FIGGLN +T +K L+ +FG++G + V+LM+DRET KSRGFAF+TF A
Sbjct: 1 MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKP-SFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 545
DAK+A ++MNG LDGK IKV+QA +P S E
Sbjct: 61 DAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSR 120
Query: 546 XXXXXXXHMDDGG--YSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMG 719
+ GG Y+ NFN+SSS RS++G+
Sbjct: 121 ARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLR 180
Query: 720 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPP 899
GR P R+ PR EP SRRD Y PRD G S+
Sbjct: 181 GREP--HRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRG----------- 227
Query: 900 RDYTYRDYGHSSSRDD--YPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPP 1073
Y DYG+ SR++ + SG SYRD+Y SYG AP
Sbjct: 228 ----YCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPS 283
Query: 1074 TRG 1082
RG
Sbjct: 284 ARG 286
>ref|NP_001159856.1| RNA-binding motif protein, Y chromosome, family 1 member B [Mus
musculus].
Length = 380
Score = 145 bits (365), Expect = 2e-34
Identities = 103/303 (33%), Positives = 134/303 (44%), Gaps = 5/303 (1%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
M E ++PGK+FIGGLN +T +K L+ +FG++G + V+LM+DRET KSRGFAF+TF A
Sbjct: 1 MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKP-SFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 545
DAK+A ++MNG LDGK IKV+QA +P S E
Sbjct: 61 DAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSR 120
Query: 546 XXXXXXXHMDDGG--YSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMG 719
+ GG Y+ NFN+SSS RS++G+
Sbjct: 121 ARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLR 180
Query: 720 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPP 899
GR P R+ PR EP SRRD Y PRD G S+
Sbjct: 181 GREP--HRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRG----------- 227
Query: 900 RDYTYRDYGHSSSRDD--YPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPP 1073
Y DYG+ SR++ + SG SYRD+Y SYG AP
Sbjct: 228 ----YCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPS 283
Query: 1074 TRG 1082
RG
Sbjct: 284 ARG 286
>ref|XP_001478357.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
A1-like isoform 2 [Mus musculus].
Length = 380
Score = 144 bits (364), Expect = 2e-34
Identities = 103/303 (33%), Positives = 133/303 (43%), Gaps = 5/303 (1%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
M E D+PGK+FIGGLN +T +K L+ +FG++G + V+LM+DRET KSRGFAF+TF A
Sbjct: 1 MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKP-SFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 545
DAK+A ++MNG LDGK IKV+QA +P S E
Sbjct: 61 DAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSR 120
Query: 546 XXXXXXXHMDDGG--YSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMG 719
+ GG Y+ NFN+SSS RS++G+
Sbjct: 121 ARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLR 180
Query: 720 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPP 899
GR P R+ PR EP SRRD Y PRD G S+
Sbjct: 181 GREP--HRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGNC--------- 229
Query: 900 RDYTYRDYGHSSSRDD--YPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPP 1073
DYG+ SR++ + SG SYRD+Y SYG AP
Sbjct: 230 ------DYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPS 283
Query: 1074 TRG 1082
RG
Sbjct: 284 ARG 286
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,870,574
Number of extensions: 1136016
Number of successful extensions: 3628
Number of sequences better than 1.0e-05: 146
Number of HSP's gapped: 3544
Number of HSP's successfully gapped: 205
Length of query: 692
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 584
Effective length of database: 12,373,671
Effective search space: 7226223864
Effective search space used: 7226223864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002355
(2076 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360509.1| PREDICTED: heterogeneous nuclear ribonucleop... 402 e-112
Alignment gi|XP_003360508.1| PREDICTED: heterogeneous nuclear ribonucleop... 402 e-112
Alignment gi|XP_003354018.1| PREDICTED: cold-inducible RNA-binding protei... 108 1e-23
Alignment gi|XP_003354017.1| PREDICTED: cold-inducible RNA-binding protei... 108 1e-23
Alignment gi|XP_003123036.2| PREDICTED: cold-inducible RNA-binding protei... 108 1e-23
Alignment gi|NP_001230348.1| RNA binding motif (RNP1, RRM) protein 3 [Sus... 95 2e-19
Alignment gi|XP_003353461.1| PREDICTED: putative RNA-binding protein 3-li... 84 3e-16
Alignment gi|NP_001070689.1| transformer-2 protein homolog beta [Sus scro... 69 1e-11
Alignment gi|NP_001070697.1| serine/arginine-rich splicing factor 2 [Sus ... 67 3e-11
Alignment gi|XP_003354022.1| PREDICTED: DAZ-associated protein 1-like iso... 67 3e-11
>ref|XP_003360509.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1 [Sus
scrofa].
Length = 390
Score = 402 bits (1033), Expect = e-112
Identities = 219/353 (62%), Positives = 219/353 (62%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGSGGTRG 120
Query: 549 XXXXXXHMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGRA 728
HMDDGGYSMNFNMSSSRGPL RSSSGMGGRA
Sbjct: 121 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRA 180
Query: 729 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRDY 908
PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK APPPRDY
Sbjct: 181 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDY 240
Query: 909 TYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPTRGPP 1088
TYRDYGHSSSRDDYP HPSGGSYRDSYESYGNSRSAPPTRGPP
Sbjct: 241 TYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPP 300
Query: 1089 PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRQERGLPPSME 1247
P VGRQERGLPPSME
Sbjct: 301 PSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 353
>ref|XP_003360508.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like [Sus
scrofa].
Length = 390
Score = 402 bits (1033), Expect = e-112
Identities = 219/353 (62%), Positives = 219/353 (62%)
Frame = +3
Query: 189 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 368
MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 369 DAKDAARDMNGKSLDGKAIKVEQATKPSFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 548
DAKDAARDMNGKSLDGKAIKVEQATKPSFE
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGSGGTRG 120
Query: 549 XXXXXXHMDDGGYSMNFNMSSSRGPLXXXXXXXXXXXXXXXXXXXXXXXXRSSSGMGGRA 728
HMDDGGYSMNFNMSSSRGPL RSSSGMGGRA
Sbjct: 121 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRA 180
Query: 729 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKXXXXXXXXXXXXXXXXXAPPPRDY 908
PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK APPPRDY
Sbjct: 181 PVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDY 240
Query: 909 TYRDYGHSSSRDDYPXXXXXXXXXXXXXXXXXXHPSGGSYRDSYESYGNSRSAPPTRGPP 1088
TYRDYGHSSSRDDYP HPSGGSYRDSYESYGNSRSAPPTRGPP
Sbjct: 241 TYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGPP 300
Query: 1089 PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRQERGLPPSME 1247
P VGRQERGLPPSME
Sbjct: 301 PSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 353
>ref|XP_003354018.1| PREDICTED: cold-inducible RNA-binding protein isoform 3 [Sus
scrofa].
Length = 168
Score = 108 bits (270), Expect = 1e-23
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +3
Query: 198 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 377
A GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 378 DAARDMNGKSLDGKAIKVEQATKPS 452
DA MNGKS+DG+ I+V+QA K S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSS 86
>ref|XP_003354017.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Sus
scrofa].
Length = 168
Score = 108 bits (270), Expect = 1e-23
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +3
Query: 198 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 377
A GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 378 DAARDMNGKSLDGKAIKVEQATKPS 452
DA MNGKS+DG+ I+V+QA K S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSS 86
>ref|XP_003123036.2| PREDICTED: cold-inducible RNA-binding protein isoform 1 [Sus
scrofa].
Length = 172
Score = 108 bits (270), Expect = 1e-23
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +3
Query: 198 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 377
A GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 378 DAARDMNGKSLDGKAIKVEQATKPS 452
DA MNGKS+DG+ I+V+QA K S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSS 86
>ref|NP_001230348.1| RNA binding motif (RNP1, RRM) protein 3 [Sus scrofa].
Length = 156
Score = 94.7 bits (234), Expect = 2e-19
Identities = 45/79 (56%), Positives = 60/79 (75%)
Frame = +3
Query: 210 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 389
GKLF+GGLN T+E+ALE F +G I EV+++KDRET +SRGF F+TF +P A +A R
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMR 65
Query: 390 DMNGKSLDGKAIKVEQATK 446
MNG+SLDG+ I+V+ A K
Sbjct: 66 AMNGESLDGRQIRVDHAGK 84
>ref|XP_003353461.1| PREDICTED: putative RNA-binding protein 3-like [Sus scrofa].
Length = 156
Score = 84.0 bits (206), Expect = 3e-16
Identities = 40/79 (50%), Positives = 56/79 (70%)
Frame = +3
Query: 210 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 389
GKLF+GGLN ++++ALE + I EV+++KDRET +SRGF F+TF +P A + R
Sbjct: 6 GKLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMR 65
Query: 390 DMNGKSLDGKAIKVEQATK 446
MNG+SLDG+ I V+ A K
Sbjct: 66 AMNGESLDGRQIHVDHAGK 84
>ref|NP_001070689.1| transformer-2 protein homolog beta [Sus scrofa].
Length = 288
Score = 68.9 bits (167), Expect = 1e-11
Identities = 34/73 (46%), Positives = 49/73 (67%)
Frame = +3
Query: 216 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 395
L + GL+ T E+ L VF KYG I +V ++ D+++ +SRGFAFV FE+ DAK+A
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 396 NGKSLDGKAIKVE 434
NG LDG+ I+V+
Sbjct: 180 NGMELDGRRIRVD 192
>ref|NP_001070697.1| serine/arginine-rich splicing factor 2 [Sus scrofa].
Length = 221
Score = 67.4 bits (163), Expect = 3e-11
Identities = 35/87 (40%), Positives = 50/87 (57%)
Frame = +3
Query: 180 GRKMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFE 359
GR + + L + L T+ L VF KYGR+ +V + +DR T +SRGFAFV F
Sbjct: 4 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 63
Query: 360 SPADAKDAARDMNGKSLDGKAIKVEQA 440
DA+DA M+G LDG+ ++V+ A
Sbjct: 64 DKRDAEDAMDAMDGAVLDGRELRVQMA 90
>ref|XP_003354022.1| PREDICTED: DAZ-associated protein 1-like isoform 2 [Sus scrofa].
Length = 378
Score = 67.4 bits (163), Expect = 3e-11
Identities = 33/82 (40%), Positives = 50/82 (60%)
Frame = +3
Query: 198 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 377
AD GKLF+GGL+ T ++ L + F +YG +V+ ++MKD+ TN+SRGF FV F+ P +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCV 64
Query: 378 DAARDMNGKSLDGKAIKVEQAT 443
+LDG+ I + T
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCT 86
Score = 58.5 bits (140), Expect = 1e-08
Identities = 30/97 (30%), Positives = 53/97 (54%)
Frame = +3
Query: 150 DRCHPSDLYQGRKMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNK 329
+R P + +Q + + K+F+GG+ E L F K+G + EV+++ D E +
Sbjct: 93 ERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 152
Query: 330 SRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 440
RGF F+TFE + D A +M+ + GK ++V++A
Sbjct: 153 PRGFGFITFED-EQSVDQAVNMHFHDIMGKKVEVKRA 188
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,285,099
Number of extensions: 846812
Number of successful extensions: 2631
Number of sequences better than 1.0e-05: 87
Number of HSP's gapped: 2579
Number of HSP's successfully gapped: 113
Length of query: 692
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 586
Effective length of database: 8,704,850
Effective search space: 5101042100
Effective search space used: 5101042100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002355
(2076 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 1080 0.0
Sscrofa_Chr07 561 e-157
>Sscrofa_ChrX
|| Length = 144288218
Score = 1080 bits (545), Expect = 0.0
Identities = 621/646 (96%), Gaps = 2/646 (0%)
Strand = Plus / Plus
Query: 1413 gtggaacctattctgtcataactacccaaggactactaaaaggaaaaattgtgttacctt 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127901279 gtggaacctattctgtcataactacccaaggactactaaaaggaaaaattgtgttacctt 127901338
Query: 1473 tttaaaatttcctgttaagttccccttccacaatttttatgttcttgtgaggaaaaaagt 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127901339 tttaaaatttcctgttaagttccccttccacaatttttatgttcttgtgaggaaaaaagt 127901398
Query: 1533 aaaatgtttaatcttatttgattttatgacattgctttcaataagcaaatgttaaatgtg 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127901399 aaaatgtttaatcttatttgattttatgacattgctttcaataagcaaatgttaaatgtg 127901458
Query: 1593 ttaagacttgacatgtgtgctagtgttgtaattttccaagtaaaagtgtccgtaaaggcc 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127901459 ttaagacttgacatgtgtgctagtgttgtaattttccaagtaaaagtgtccgtaaaggcc 127901518
Query: 1653 acttcctctaagatttttcccagtaaatgatgaggcaagcaattctaagatcttccacaa 1712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127901519 acttcctctaagatttttcccagtaaatgatgaggcaagcaattctaagatcttccacaa 127901578
Query: 1713 actgtctagccacctaaaatggagcgatgaatcctcctcctgcctattcaaacaagctag 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127901579 actgtctagccacctaaaatggagcgatgaatcctcctcctgcctattcaaacaagctag 127901638
Query: 1773 ctgttagagggtggtcggggttatgctactcttaggatttcagaatgtcttcaaactgaa 1832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127901639 ctgttagagggtggtcggggttatgctactcttaggatttcagaatgtcttcaaactgaa 127901698
Query: 1833 atctcaatgttctcagtatgaaaacctgagatcagatgcttatatgtaaggaaagtgcta 1892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127901699 atctcaatgttctcagtatgaaaacctgagatcagatgcttatatgtaaggaaagtgcta 127901758
Query: 1893 ttcccccagtaa-cactcnnnnnnngcaaatggataatgcccataatttgcctttctgac 1951
||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 127901759 ttcgcccagtaaacactcaaaaaaagcaaatggataatggccatattttgcctttctgac 127901818
Query: 1952 atttccttgggaatctacaaggaaaccccctttccccttcccccgat-agaacatttaag 2010
||||||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||
Sbjct: 127901819 atttccttgggaatctacaaggaaaacccctttccccctcccccgataagaccatttaag 127901878
Query: 2011 ggggtggttagccacttccgaatacctaataaaaagttgggccaaa 2056
| ||| | ||| ||| | |||||| ||||||||||| |||||||
Sbjct: 127901879 tgtgtgttaagcaactacagaatactaaataaaaagtttggccaaa 127901924
Score = 615 bits (310), Expect = e-173
Identities = 310/310 (100%)
Strand = Plus / Plus
Query: 1050 ggtaactcacgtagtgctccacctacacgagggcccccgccatcttatggtggaagcagt 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127900916 ggtaactcacgtagtgctccacctacacgagggcccccgccatcttatggtggaagcagt 127900975
Query: 1110 cgctatgatgattacagcagctcacgtgacggatatggtggaagtcgagacagttactca 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127900976 cgctatgatgattacagcagctcacgtgacggatatggtggaagtcgagacagttactca 127901035
Query: 1170 agcagccgaagtgatctctactcaagtggtcgtgatcgggttggcagacaagaaagaggg 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127901036 agcagccgaagtgatctctactcaagtggtcgtgatcgggttggcagacaagaaagaggg 127901095
Query: 1230 cttcccccttctatggaaagggggtaccctcctccacgagattcctacagcagttcaagc 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127901096 cttcccccttctatggaaagggggtaccctcctccacgagattcctacagcagttcaagc 127901155
Query: 1290 cgcggagcaccaagaggtggtggccgtggaggaagccgatctgatagagggggaggcaga 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127901156 cgcggagcaccaagaggtggtggccgtggaggaagccgatctgatagagggggaggcaga 127901215
Query: 1350 agcagatatt 1359
||||||||||
Sbjct: 127901216 agcagatatt 127901225
Score = 339 bits (171), Expect = 4e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 403 agtccttagatggaaaagctatcaaagtagaacaagccactaaaccatcatttgaaagtg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127898619 agtccttagatggaaaagctatcaaagtagaacaagccactaaaccatcatttgaaagtg 127898678
Query: 463 gtagacgtggaccacctccacctccaagaagcagaggccctccaagaggccttagaggcg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127898679 gtagacgtggaccacctccacctccaagaagcagaggccctccaagaggccttagaggcg 127898738
Query: 523 gaagaggaagtggaggaaccaggggacctccctcacgtggagggcacatgg 573
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127898739 gaagaggaagtggaggaaccaggggacctccctcacgtggagggcacatgg 127898789
Score = 325 bits (164), Expect = 6e-86
Identities = 167/168 (99%)
Strand = Plus / Plus
Query: 1 gagcctcgttcccgggcagtataaagtttgctgtctcctttgttcgcgctcgttgcgcag 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 127896437 gagcctcgttcccgggcagtataaagtttgctgtctcctttgttcgccctcgttgcgcag 127896496
Query: 61 tagtgcgagccgcttctcccttccgtcttcgagaccggccgccctcccgcgtcccgagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127896497 tagtgcgagccgcttctcccttccgtcttcgagaccggccgccctcccgcgtcccgagct 127896556
Query: 121 gctaggaagccgctgtcgcaggagcctgggaccgttgtcacccctccg 168
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127896557 gctaggaagccgctgtcgcaggagcctgggaccgttgtcacccctccg 127896604
Score = 305 bits (154), Expect = 5e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 573 gatgatggtggctattccatgaattttaacatgagttcttccaggggaccacttccagta 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127899293 gatgatggtggctattccatgaattttaacatgagttcttccaggggaccacttccagta 127899352
Query: 633 aaaagaggaccaccaccacgaagtgggggtcctcctcctaaaagatctgccccttcagga 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127899353 aaaagaggaccaccaccacgaagtgggggtcctcctcctaaaagatctgccccttcagga 127899412
Query: 693 ccagttcgcagtagcagtggaatgggaggaagag 726
||||||||||||||||||||||||||||||||||
Sbjct: 127899413 ccagttcgcagtagcagtggaatgggaggaagag 127899446
Score = 258 bits (130), Expect = 1e-65
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 168 gacttataccaggggagaaaaatggttgaagcagatcgccctgggaagctcttcattggt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127897716 gacttataccaggggagaaaaatggttgaagcagatcgccctgggaagctcttcattggt 127897775
Query: 228 ggcctcaatactgaaacaaatgagaaggcccttgaggcagtatttggcaaatatggacga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127897776 ggcctcaatactgaaacaaatgagaaggcccttgaggcagtatttggcaaatatggacga 127897835
Query: 288 atagtggaag 297
||||||||||
Sbjct: 127897836 atagtggaag 127897845
Score = 254 bits (128), Expect = 2e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 840 agctattcaagcagagattacccaagttctcgtgatacaagagattacgcaccaccacca 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127899950 agctattcaagcagagattacccaagttctcgtgatacaagagattacgcaccaccacca 127900009
Query: 900 agagattatacttaccgtgattacggtcattccagttcacgtgatgactatccatcaaga 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127900010 agagattatacttaccgtgattacggtcattccagttcacgtgatgactatccatcaaga 127900069
Query: 960 ggctatag 967
||||||||
Sbjct: 127900070 ggctatag 127900077
Score = 232 bits (117), Expect = 6e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 725 agctcctgtatcacgtggaagagatagttatggaggcccacctcgaagggaacccctgcc 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127899740 agctcctgtatcacgtggaagagatagttatggaggcccacctcgaagggaacccctgcc 127899799
Query: 785 ctctcgtcgagatgtttatttgtccccaagagatgatggctattctactaaagacag 841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127899800 ctctcgtcgagatgtttatttgtccccaagagatgatggctattctactaaagacag 127899856
Score = 216 bits (109), Expect = 4e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 296 agttctcttgatgaaagatcgtgaaactaacaagtccagaggatttgcttttgtcacctt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127898042 agttctcttgatgaaagatcgtgaaactaacaagtccagaggatttgcttttgtcacctt 127898101
Query: 356 tgaaagcccagcagatgctaaggatgcagccagagacatgaacggaaag 404
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127898102 tgaaagcccagcagatgctaaggatgcagccagagacatgaacggaaag 127898150
Score = 178 bits (90), Expect = 8e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 965 tagtgatagagatggctatggtcgtgatcgtgactattcagatcatccaagcggaggttc 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127900203 tagtgatagagatggctatggtcgtgatcgtgactattcagatcatccaagcggaggttc 127900262
Query: 1025 ctacagagactcatatgagagttatggtaa 1054
||||||||||||||||||||||||||||||
Sbjct: 127900263 ctacagagactcatatgagagttatggtaa 127900292
>Sscrofa_Chr07
|| Length = 134764511
Score = 561 bits (283), Expect = e-157
Identities = 535/614 (87%), Gaps = 13/614 (2%)
Strand = Plus / Minus
Query: 1447 actaaaaggaaaaattgtgttacctttttaaaatttcctgttaagttccccttccacaat 1506
|||||||||||||| |||||| ||||||| |||||||||||||||||||||| ||| |||
Sbjct: 44992988 actaaaaggaaaaagtgtgttgcctttttcaaatttcctgttaagttcccctgccataat 44992929
Query: 1507 ttttatgttcttgtgaggaaaaaagtaaaatgtttaatcttatttgattttatgacattg 1566
||||||||||||||||||||||| ||| ||||| |||| ||||||| ||||||||||||
Sbjct: 44992928 ttttatgttcttgtgaggaaaaacataacatgttaaatcatatttgagtttatgacattg 44992869
Query: 1567 ctttcaataagcaaatgttaaatgtgttaagacttgacatgtgtgctagtgttgtaattt 1626
||||||| ||||| |||||||||||||||||| |||||||||| |||| ||||||||||
Sbjct: 44992868 ctttcaacaagcacatgttaaatgtgttaagatgtgacatgtgtactagcgttgtaattt 44992809
Query: 1627 tccaagtaaaagtgtccgtaaaggccacttcctctaagatttttcccagtaaatgatgag 1686
|||||| || ||||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 44992808 tccaaggaagggtgtcgctaaaggccacttcctttaagatttttccccgtaaatgatgag 44992749
Query: 1687 gcaagcaattctaagatcttccacaaactgtctagccacctaaaatggagcgatgaatcc 1746
||||||||||||||| ||||||||||| | |||||||||||||||| ||||||
Sbjct: 44992748 gcaagcaattctaagctcttccacaaaatatctagccacctaaaat----agatgaa--- 44992696
Query: 1747 tcctcctgcctattcaaacaagctagctgttagagggtggtcggggttatgctactctta 1806
|||||||||||||||||||||||||||| |||||||||||| |||| ||||| ||||||
Sbjct: 44992695 tcctcctgcctattcaaacaagctagctattagagggtggttgggg-aatgctcctctta 44992637
Query: 1807 ggatttcagaatgtcttcaaactgaaatctcaatgttctcagtatgaaa-acctgagatc 1865
||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||
Sbjct: 44992636 ggatttccaaatgtcttcaaacaaaaatctccatgttctcagtatgaaacacctgagatc 44992577
Query: 1866 agatgcttatatgtaaggaaagtgctattcccccagt-aacactcnnnnnnngcaaatgg 1924
|||||||||||||||||||||||||| ||| |||||| ||||||| |||||||
Sbjct: 44992576 agatgcttatatgtaaggaaagtgctgttcgcccagtaaacactcaaaaaaa-caaatgg 44992518
Query: 1925 ataatgcccataatttgcctttctgacatttccttgggaatctacaaggaaaccc--cct 1982
| |||| || || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 44992517 acaatggccgtattttgcctttctgacatttccttgggaatctacaaggaaacccttcct 44992458
Query: 1983 ttccccttcccccgatagaacatttaagggggtggttagccacttccgaatacctaataa 2042
|||||| |||| | ||| || |||||| | ||| | ||| ||| | |||||| |||||
Sbjct: 44992457 ttccccctccctcaataagacctttaagtgtgtgttaagcaactacagaatactaaataa 44992398
Query: 2043 aaagttgggccaaa 2056
|||||| |||||||
Sbjct: 44992397 aaagtttggccaaa 44992384
Score = 192 bits (97), Expect = 5e-46
Identities = 139/153 (90%)
Strand = Plus / Minus
Query: 1207 gggttggcagacaagaaagagggcttcccccttctatggaaagggggtaccctcctccac 1266
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 44993225 gggttggcagacaagaaagagggcttcccccttcgatggaaagggggtaccctcctccac 44993166
Query: 1267 gagattcctacagcagttcaagccgcggagcaccaagaggtggtggccgtggaggaagcc 1326
||| ||| | |||| ||||||| | |||||| |||||||||||||||||||||||||
Sbjct: 44993165 gagggtcccatggcaggtcaagcctcagagcacggagaggtggtggccgtggaggaagcc 44993106
Query: 1327 gatctgatagagggggaggcagaagcagatatt 1359
|||||||||||||| |||| ||||||||||||
Sbjct: 44993105 aatctgatagaggggaaggcggaagcagatatt 44993073
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 59,625,511
Number of extensions: 426
Number of successful extensions: 426
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 13
Length of query: 2076
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2054
Effective length of database: 2,808,408,574
Effective search space: 5768471210996
Effective search space used: 5768471210996
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)