Animal-Genome cDNA 20110601C-002356


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002356
         (1177 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029931.2| 15 kDa selenoprotein precursor [Bos taurus].      234   1e-61

>ref|NP_001029931.2| 15 kDa selenoprotein precursor [Bos taurus].
          Length = 162

 Score =  234 bits (597), Expect = 1e-61
 Identities = 117/139 (84%), Positives = 121/139 (87%)
 Frame = +2

Query: 275 QMVSAFGAEFSSESCRELGFSSNLLCGSCXXXXXXXXXXXXXXCRGCCQEEAQFETKKLY 454
           Q VSA GAEFSSESCRELGFSSNLLC SC              CRGCCQEEAQFETKKLY
Sbjct: 24  QTVSALGAEFSSESCRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKLY 83

Query: 455 AGAILEVCG*KLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSI 634
           AGAILEVCG KLGRFPQVQAFVRSDKPKLF+GLQIKYVRGSDPVLKLLDD+GNIAEELSI
Sbjct: 84  AGAILEVCGUKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSI 143

Query: 635 LKWNTDSVEEFLSEKLQRV 691
           LKWNTDSVEEFLSEKL+R+
Sbjct: 144 LKWNTDSVEEFLSEKLERI 162


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,969,143
Number of extensions: 1127662
Number of successful extensions: 3662
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3661
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 288
Effective length of database: 14,240,222
Effective search space: 4101183936
Effective search space used: 4101183936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002356
         (1177 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001108232.1| 15 kDa selenoprotein [Canis lupus familiaris].    234   2e-61

>ref|NP_001108232.1| 15 kDa selenoprotein [Canis lupus familiaris].
          Length = 162

 Score =  234 bits (596), Expect = 2e-61
 Identities = 117/139 (84%), Positives = 120/139 (86%)
 Frame = +2

Query: 275 QMVSAFGAEFSSESCRELGFSSNLLCGSCXXXXXXXXXXXXXXCRGCCQEEAQFETKKLY 454
           Q VS FGAEFSSE+CRELGFSSNLLC SC              CR CCQEEAQFETKKLY
Sbjct: 24  QAVSTFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRRCCQEEAQFETKKLY 83

Query: 455 AGAILEVCG*KLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSI 634
           AGAILEVCG KLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSI
Sbjct: 84  AGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSI 143

Query: 635 LKWNTDSVEEFLSEKLQRV 691
           LKWNTDSVEEFLSEKL+R+
Sbjct: 144 LKWNTDSVEEFLSEKLERI 162


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,697,484
Number of extensions: 1158852
Number of successful extensions: 3636
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3622
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 287
Effective length of database: 15,374,224
Effective search space: 4412402288
Effective search space used: 4412402288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002356
         (1177 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004252.2| 15 kDa selenoprotein isoform 1 precursor [Homo ...   238   6e-63
Alignment   gi|NP_976086.1| 15 kDa selenoprotein isoform 2 precursor [Homo ...   124   1e-32

>ref|NP_004252.2| 15 kDa selenoprotein isoform 1 precursor [Homo sapiens].
          Length = 165

 Score =  238 bits (608), Expect = 6e-63
 Identities = 119/139 (85%), Positives = 122/139 (87%)
 Frame = +2

Query: 275 QMVSAFGAEFSSESCRELGFSSNLLCGSCXXXXXXXXXXXXXXCRGCCQEEAQFETKKLY 454
           Q VSAFGAEFSSE+CRELGFSSNLLC SC              CRGCCQEEAQFETKKLY
Sbjct: 27  QAVSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKLY 86

Query: 455 AGAILEVCG*KLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSI 634
           AGAILEVCG KLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSI
Sbjct: 87  AGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSI 146

Query: 635 LKWNTDSVEEFLSEKLQRV 691
           LKWNTDSVEEFLSEKL+R+
Sbjct: 147 LKWNTDSVEEFLSEKLERI 165


>ref|NP_976086.1| 15 kDa selenoprotein isoform 2 precursor [Homo sapiens].
          Length = 124

 Score =  124 bits (310), Expect(2) = 1e-32
 Identities = 61/79 (77%), Positives = 62/79 (78%)
 Frame = +2

Query: 275 QMVSAFGAEFSSESCRELGFSSNLLCGSCXXXXXXXXXXXXXXCRGCCQEEAQFETKKLY 454
           Q VSAFGAEFSSE+CRELGFSSNLLC SC              CRGCCQEEAQFETKKLY
Sbjct: 27  QAVSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKLY 86

Query: 455 AGAILEVCG*KLGRFPQVQ 511
           AGAILEVCG KLGRFPQVQ
Sbjct: 87  AGAILEVCGUKLGRFPQVQ 105



 Score = 35.0 bits (79), Expect(2) = 1e-32
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 559 QVCSWLGPCAQASGRQREHC 618
           QVC W  PC +A GRQ EHC
Sbjct: 105 QVCPWFRPCIKAFGRQWEHC 124


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,891,697
Number of extensions: 1131535
Number of successful extensions: 3537
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3537
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 287
Effective length of database: 14,835,944
Effective search space: 4257915928
Effective search space used: 4257915928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002356
         (1177 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_444332.1| 15 kDa selenoprotein precursor [Mus musculus].       233   2e-61

>ref|NP_444332.1| 15 kDa selenoprotein precursor [Mus musculus].
          Length = 162

 Score =  233 bits (595), Expect = 2e-61
 Identities = 116/139 (83%), Positives = 120/139 (86%)
 Frame = +2

Query: 275 QMVSAFGAEFSSESCRELGFSSNLLCGSCXXXXXXXXXXXXXXCRGCCQEEAQFETKKLY 454
           Q  SA GAEF+SE+CRELGFSSNLLC SC              CRGCCQEEAQFETKKLY
Sbjct: 24  QAASALGAEFASEACRELGFSSNLLCSSCDLLGQFNLLPLDPVCRGCCQEEAQFETKKLY 83

Query: 455 AGAILEVCG*KLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSI 634
           AGAILEVCG KLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSI
Sbjct: 84  AGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSI 143

Query: 635 LKWNTDSVEEFLSEKLQRV 691
           LKWNTDSVEEFLSEKL+R+
Sbjct: 144 LKWNTDSVEEFLSEKLERI 162


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,266,227
Number of extensions: 953006
Number of successful extensions: 2753
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2753
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 289
Effective length of database: 12,523,851
Effective search space: 3619392939
Effective search space used: 3619392939
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002356
         (1177 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001078912.1| 15 kDa selenoprotein precursor [Sus scrofa].      246   2e-65

>ref|NP_001078912.1| 15 kDa selenoprotein precursor [Sus scrofa].
          Length = 162

 Score =  246 bits (627), Expect = 2e-65
 Identities = 124/139 (89%), Positives = 124/139 (89%)
 Frame = +2

Query: 275 QMVSAFGAEFSSESCRELGFSSNLLCGSCXXXXXXXXXXXXXXCRGCCQEEAQFETKKLY 454
           QMVSAFGAEFSSESCRELGFSSNLLCGSC              CRGCCQEEAQFETKKLY
Sbjct: 24  QMVSAFGAEFSSESCRELGFSSNLLCGSCDLLGQFDLLQLDPDCRGCCQEEAQFETKKLY 83

Query: 455 AGAILEVCG*KLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSI 634
           AGAILEVCG KLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSI
Sbjct: 84  AGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSI 143

Query: 635 LKWNTDSVEEFLSEKLQRV 691
           LKWNTDSVEEFLSEKLQRV
Sbjct: 144 LKWNTDSVEEFLSEKLQRV 162


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,676,487
Number of extensions: 724753
Number of successful extensions: 2409
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2409
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 291
Effective length of database: 8,829,335
Effective search space: 2569336485
Effective search space used: 2569336485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002356
         (1177 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                        1166   0.0  

>Sscrofa_Chr04 
||          Length = 143465943

 Score = 1166 bits (588), Expect = 0.0
 Identities = 602/604 (99%), Gaps = 2/604 (0%)
 Strand = Plus / Plus

                                                                             
Query: 561       agtatgttcgtggctcggaccctgtgctcaagcttctggacgacaacgggaacattgctg 620
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141734704 agtatgttcgtggctcggaccctgtgctcaagcttctggacgacaacgggaacattgctg 141734763

                                                                             
Query: 621       aagaactgagtatcctcaagtggaacacagacagcgtggaagaattcctgagtgaaaagc 680
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141734764 aagaactgagtatcctcaagtggaacacagacagcgtggaagaattcctgagtgaaaagc 141734823

                                                                             
Query: 681       tgcagcgcgtctaaatcttgcttaaatttcgtcctgtccttttgttaccttgtcagatga 740
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141734824 tgcagcgcgtctaaatcttgcttaaatttcgtcctgtccttttgttaccttgtcagatga 141734883

                                                                             
Query: 741       aacagcgcctaggaaatagttttggcttcttccattgatcagtctcttaccgtgaggcat 800
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141734884 aacagcgcctaggaaatagttttggcttcttccattgatcagtctcttaccgtgaggcat 141734943

                                                                             
Query: 801       tcggcattgaattagaagacggaagtggccgcagagcccagggtaggtaaggaaggggca 860
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141734944 tcggcattgaattagaagacggaagtggccgcagagcccagggtaggtaaggaaggggca 141735003

                                                                             
Query: 861       agcttcgcatcatctacttgtaaagctccgtcctccagcacctgttgctaccactaacag 920
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141735004 agcttcgcatcatctacttgtaaagctccgtcctccagcacctgttgctaccactaacag 141735063

                                                                             
Query: 921       tgcttggtgataaccttgtggctaattaatgcaaatgatagtttgtgataattggtccag 980
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141735064 tgcttggtgataaccttgtggctaattaatgcaaatgatagtttgtgataattggtccag 141735123

                                                                             
Query: 981       tttttaaatgaggggggttaataaggaagatgcttgccgtgcctcatgggctgtgtgctc 1040
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141735124 tttttaaatgaggggggttaataaggaagatgcttgccgtgcctcatgggctgtgtgctc 141735183

                                                                             
Query: 1041      ccggcaggtaatgacagccctgccaagcagatgagggatcctgggcctccgcaggtggcc 1100
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141735184 ccggcaggtaatgacagccctgccaagcagatgagggatcctgggcctccgcaggtggcc 141735243

                                                                             
Query: 1101      agcctctcagagcctcatggttttgtgttacccagcctccctg-taatag-agcattgtc 1158
                 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 141735244 agcctctcagagcctcatggttttgtgttacccagcctccctgttaatagaagcattgtc 141735303

                     
Query: 1159      attt 1162
                 ||||
Sbjct: 141735304 attt 141735307



 Score =  391 bits (197), Expect = e-106
 Identities = 197/197 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1         ggagcccgcgacttcaggcttccgtcacatgtaaaggcacgtggtcccctttaagctggc 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141706182 ggagcccgcgacttcaggcttccgtcacatgtaaaggcacgtggtcccctttaagctggc 141706241

                                                                             
Query: 61        atacgctcttcgctcacgcgcgtctatgcagaataagaaacttgaggccaacggcccttg 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141706242 atacgctcttcgctcacgcgcgtctatgcagaataagaaacttgaggccaacggcccttg 141706301

                                                                             
Query: 121       cagcctgttttggatcaggctctggagtggacgcccctcgcacaagggtcctcgggcggc 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141706302 cagcctgttttggatcaggctctggagtggacgcccctcgcacaagggtcctcgggcggc 141706361

                                  
Query: 181       cggagacccacgggaga 197
                 |||||||||||||||||
Sbjct: 141706362 cggagacccacgggaga 141706378



 Score =  335 bits (169), Expect = 3e-89
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                             
Query: 280       ggtgtctgcgttcggggcagagttttcctcggagtcctgcagggagctgggcttctccag 339
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141715619 ggtgtctgcgttcggggcagagttttcctcggagtcctgcagggagctgggcttctccag 141715678

                                                                             
Query: 340       caatttgctttgcggctcctgtgaccttctcggacagttcgaccttctccagctggaccc 399
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141715679 caatttgctttgcggctcctgtgaccttctcggacagttcgaccttctccagctggaccc 141715738

                                                                  
Query: 400       cgactgtagagggtgctgtcaggaagaagcacagtttgaaaccaagaag 448
                 |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141715739 cgactgtagagggtgctgtcaggaagaagcacagtttgaaaccaagaag 141715787



 Score =  131 bits (66), Expect = 9e-28
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                             
Query: 447       agctgtatgcaggagctatcctcgaagtctgcggatgaaagttggggaggttcccgcaag 506
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141730613 agctgtatgcaggagctatcctcgaagtctgcggatgaaagttggggaggttcccgcaag 141730672

                       
Query: 507       tccaag 512
                 ||||||
Sbjct: 141730673 tccaag 141730678



 Score =  105 bits (53), Expect = 5e-20
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                      
Query: 510       aagctttcgtcaggagtgataagcccaaactattcagaggactacaaatcaag 562
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141732964 aagctttcgtcaggagtgataagcccaaactattcagaggactacaaatcaag 141733016


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,766,845
Number of extensions: 147
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 5
Length of query: 1177
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1156
Effective length of database: 2,808,413,156
Effective search space: 3246525608336
Effective search space used: 3246525608336
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)