Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002360
(1306 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069917.1| small ubiquitin-related modifier 3 precursor... 193 3e-49
Alignment gi|XP_002693106.1| PREDICTED: small ubiquitin-related modifier ... 187 1e-47
Alignment gi|XP_001252307.1| PREDICTED: small ubiquitin-related modifier ... 187 1e-47
Alignment gi|XP_002684384.1| PREDICTED: small ubiquitin-related modifier ... 187 1e-47
Alignment gi|NP_777194.1| small ubiquitin-related modifier 2 precursor [B... 180 3e-45
Alignment gi|XP_002699644.1| PREDICTED: SMT3 supressor of mif two 3 homol... 178 1e-44
Alignment gi|XP_002706832.1| PREDICTED: SMT3 supressor of mif two 3 homol... 178 1e-44
Alignment gi|XP_002699645.1| PREDICTED: SMT3 supressor of mif two 3 homol... 132 7e-31
Alignment gi|XP_002706833.1| PREDICTED: SMT3 supressor of mif two 3 homol... 132 7e-31
Alignment gi|NP_001030535.1| small ubiquitin-related modifier 1 precursor... 96 9e-20
>ref|NP_001069917.1| small ubiquitin-related modifier 3 precursor [Bos taurus].
Length = 104
Score = 193 bits (490), Expect = 3e-49
Identities = 97/104 (93%), Positives = 97/104 (93%)
Frame = +3
Query: 231 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 410
MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR
Sbjct: 1 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 60
Query: 411 FDGQPINEADTPAQLEMEDEDTIDVFQQQTGGSRRAGRLSGCRL 542
FDGQPINE DTPAQLEMEDEDTIDVFQQQTGGSR A L G L
Sbjct: 61 FDGQPINETDTPAQLEMEDEDTIDVFQQQTGGSRVASCLLGSGL 104
>ref|XP_002693106.1| PREDICTED: small ubiquitin-related modifier 3-like [Bos taurus].
Length = 104
Score = 187 bits (476), Expect = 1e-47
Identities = 94/104 (90%), Positives = 96/104 (92%)
Frame = +3
Query: 231 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 410
MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR
Sbjct: 1 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 60
Query: 411 FDGQPINEADTPAQLEMEDEDTIDVFQQQTGGSRRAGRLSGCRL 542
FDGQPINE DTPAQLEME+EDTID+FQQQ GGSR A L G L
Sbjct: 61 FDGQPINETDTPAQLEMENEDTIDMFQQQMGGSRVASCLLGSGL 104
>ref|XP_001252307.1| PREDICTED: small ubiquitin-related modifier 3-like [Bos taurus].
Length = 104
Score = 187 bits (476), Expect = 1e-47
Identities = 94/104 (90%), Positives = 96/104 (92%)
Frame = +3
Query: 231 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 410
MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR
Sbjct: 1 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 60
Query: 411 FDGQPINEADTPAQLEMEDEDTIDVFQQQTGGSRRAGRLSGCRL 542
FDGQPINE DTPAQLEME+EDTID+FQQQ GGSR A L G L
Sbjct: 61 FDGQPINETDTPAQLEMENEDTIDMFQQQMGGSRVASCLLGSGL 104
>ref|XP_002684384.1| PREDICTED: small ubiquitin-related modifier 3-like [Bos taurus].
Length = 104
Score = 187 bits (476), Expect = 1e-47
Identities = 94/104 (90%), Positives = 96/104 (92%)
Frame = +3
Query: 231 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 410
MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR
Sbjct: 1 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 60
Query: 411 FDGQPINEADTPAQLEMEDEDTIDVFQQQTGGSRRAGRLSGCRL 542
FDGQPINE DTPAQLEME+EDTID+FQQQ GGSR A L G L
Sbjct: 61 FDGQPINETDTPAQLEMENEDTIDMFQQQMGGSRVASCLLGSGL 104
>ref|NP_777194.1| small ubiquitin-related modifier 2 precursor [Bos taurus].
Length = 95
Score = 180 bits (456), Expect = 3e-45
Identities = 89/93 (95%), Positives = 91/93 (97%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>ref|XP_002699644.1| PREDICTED: SMT3 supressor of mif two 3 homolog 2-like isoform 1
[Bos taurus].
Length = 95
Score = 178 bits (451), Expect = 1e-44
Identities = 88/93 (94%), Positives = 90/93 (96%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR IRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRHIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>ref|XP_002706832.1| PREDICTED: SMT3 supressor of mif two 3 homolog 2-like isoform 1
[Bos taurus].
Length = 95
Score = 178 bits (451), Expect = 1e-44
Identities = 88/93 (94%), Positives = 90/93 (96%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR IRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRHIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>ref|XP_002699645.1| PREDICTED: SMT3 supressor of mif two 3 homolog 2-like isoform 2
[Bos taurus].
Length = 76
Score = 132 bits (332), Expect = 7e-31
Identities = 71/93 (76%), Positives = 73/93 (78%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ--------- 51
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 52 ----------DTPAQLEMEDEDTIDVFQQQTGG 74
>ref|XP_002706833.1| PREDICTED: SMT3 supressor of mif two 3 homolog 2-like isoform 2
[Bos taurus].
Length = 76
Score = 132 bits (332), Expect = 7e-31
Identities = 71/93 (76%), Positives = 73/93 (78%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ--------- 51
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 52 ----------DTPAQLEMEDEDTIDVFQQQTGG 74
>ref|NP_001030535.1| small ubiquitin-related modifier 1 precursor [Bos taurus].
Length = 101
Score = 95.5 bits (236), Expect = 9e-20
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Frame = +3
Query: 237 EEKPKE---GVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
E KP G K E ++I LKV GQD S + FK+K T L KL ++YC+RQG+ M +RF
Sbjct: 5 EAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF 64
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
F+GQ I + TP +L ME+ED I+V+Q+QTGG
Sbjct: 65 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,099,240
Number of extensions: 1471337
Number of successful extensions: 7637
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 7597
Number of HSP's successfully gapped: 13
Length of query: 435
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 330
Effective length of database: 14,207,134
Effective search space: 4688354220
Effective search space used: 4688354220
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002360
(1306 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859404.1| PREDICTED: similar to SMT3 suppressor of mif tw... 180 3e-45
Alignment gi|XP_859368.1| PREDICTED: similar to SMT3 suppressor of mif tw... 180 3e-45
Alignment gi|XP_859299.1| PREDICTED: similar to SMT3 suppressor of mif tw... 180 3e-45
Alignment gi|XP_532198.2| PREDICTED: similar to SMT3 suppressor of mif tw... 180 3e-45
Alignment gi|XP_547417.1| PREDICTED: similar to SMT3 suppressor of mif tw... 172 5e-43
Alignment gi|XP_851402.1| PREDICTED: similar to SMT3 suppressor of mif tw... 144 2e-34
Alignment gi|XP_858453.1| PREDICTED: similar to SMT3 suppressor of mif tw... 125 1e-28
Alignment gi|XP_859334.1| PREDICTED: similar to small ubiquitin-like modi... 120 4e-27
Alignment gi|XP_536034.1| PREDICTED: similar to SMT3 suppressor of mif tw... 96 1e-19
Alignment gi|XP_851233.1| PREDICTED: similar to small ubiquitin-like modi... 95 1e-19
>ref|XP_859404.1| PREDICTED: similar to SMT3 suppressor of mif two 3 homolog 2
isoform 9 [Canis familiaris].
Length = 95
Score = 180 bits (456), Expect = 3e-45
Identities = 89/93 (95%), Positives = 91/93 (97%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>ref|XP_859368.1| PREDICTED: similar to SMT3 suppressor of mif two 3 homolog 2
isoform 8 [Canis familiaris].
Length = 95
Score = 180 bits (456), Expect = 3e-45
Identities = 89/93 (95%), Positives = 91/93 (97%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>ref|XP_859299.1| PREDICTED: similar to SMT3 suppressor of mif two 3 homolog 2
isoform 6 [Canis familiaris].
Length = 95
Score = 180 bits (456), Expect = 3e-45
Identities = 89/93 (95%), Positives = 91/93 (97%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>ref|XP_532198.2| PREDICTED: similar to SMT3 suppressor of mif two 3 homolog 2
isoform 5 [Canis familiaris].
Length = 95
Score = 180 bits (456), Expect = 3e-45
Identities = 89/93 (95%), Positives = 91/93 (97%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>ref|XP_547417.1| PREDICTED: similar to SMT3 suppressor of mif two 3 homolog 2
isoform 1 [Canis familiaris].
Length = 95
Score = 172 bits (437), Expect = 5e-43
Identities = 86/93 (92%), Positives = 87/93 (93%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M+ EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPL KL KAYCERQGLSMRQIRF
Sbjct: 1 MANEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLRKLTKAYCERQGLSMRQIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDGQPINE DTPAQL MEDEDTIDVFQQQTGG
Sbjct: 61 RFDGQPINETDTPAQLAMEDEDTIDVFQQQTGG 93
>ref|XP_851402.1| PREDICTED: similar to SMT3 suppressor of mif two 3 homolog 2 [Canis
familiaris].
Length = 95
Score = 144 bits (362), Expect = 2e-34
Identities = 72/93 (77%), Positives = 80/93 (86%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M+E KPKE V TEN +HI+LKVAGQDGSVV FKIK+HT LSKLMKAYCERQGL++ Q+RF
Sbjct: 1 MAEGKPKEEVMTENNEHIHLKVAGQDGSVVYFKIKKHTLLSKLMKAYCERQGLAVTQVRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDG PI DTPA LEM+DED IDVFQQQTGG
Sbjct: 61 RFDGHPIKGTDTPALLEMQDEDIIDVFQQQTGG 93
>ref|XP_858453.1| PREDICTED: similar to SMT3 suppressor of mif two 3 homolog 2
isoform 2 [Canis familiaris].
Length = 76
Score = 125 bits (313), Expect = 1e-28
Identities = 68/93 (73%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M+ EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPL KL KAYCERQ
Sbjct: 1 MANEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLRKLTKAYCERQ--------- 51
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
DTPAQL MEDEDTIDVFQQQTGG
Sbjct: 52 ----------DTPAQLAMEDEDTIDVFQQQTGG 74
>ref|XP_859334.1| PREDICTED: similar to small ubiquitin-like modifier 2 isoform b
precursor isoform 7 [Canis familiaris].
Length = 71
Score = 120 bits (300), Expect = 4e-27
Identities = 66/93 (70%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER---------- 50
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
QLEMEDEDTIDVFQQQTGG
Sbjct: 51 --------------QLEMEDEDTIDVFQQQTGG 69
>ref|XP_536034.1| PREDICTED: similar to SMT3 suppressor of mif two 3 homolog 1 [Canis
familiaris].
Length = 101
Score = 95.5 bits (236), Expect = 1e-19
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Frame = +3
Query: 237 EEKPKE---GVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
E KP G K E ++I LKV GQD S + FK+K T L KL ++YC+RQG+ M +RF
Sbjct: 5 EAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF 64
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
F+GQ I + TP +L ME+ED I+V+Q+QTGG
Sbjct: 65 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
>ref|XP_851233.1| PREDICTED: similar to small ubiquitin-like modifier 2 isoform b
precursor [Canis familiaris].
Length = 167
Score = 95.1 bits (235), Expect = 1e-19
Identities = 57/96 (59%), Positives = 64/96 (66%), Gaps = 3/96 (3%)
Frame = +3
Query: 228 AMSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHT--PLSKLMKAYCERQGLSMRQ 398
+M+++K KEGV+ EN DHINLKVAG DGSVVQFKIKR T PLSKLMKAYCE+Q
Sbjct: 93 SMADQKAKEGVEPENNDHINLKVAGHDGSVVQFKIKRDTPSPLSKLMKAYCEQQ------ 146
Query: 399 IRFRFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
+LEME EDTI VFQQQTGG
Sbjct: 147 -----------------ELEMEAEDTIVVFQQQTGG 165
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,281,891
Number of extensions: 1500720
Number of successful extensions: 8142
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 8098
Number of HSP's successfully gapped: 11
Length of query: 435
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 329
Effective length of database: 15,340,888
Effective search space: 5047152152
Effective search space used: 5047152152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002360
(1306 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008867.2| small ubiquitin-related modifier 3 precursor [H... 187 2e-47
Alignment gi|NP_008868.3| small ubiquitin-related modifier 2 isoform a pr... 180 3e-45
Alignment gi|NP_001002255.1| small ubiquitin-related modifier 4 precursor... 150 3e-36
Alignment gi|NP_001005849.1| small ubiquitin-related modifier 2 isoform b... 120 4e-27
Alignment gi|NP_001005781.1| small ubiquitin-related modifier 1 isoform a... 96 1e-19
Alignment gi|NP_003343.1| small ubiquitin-related modifier 1 isoform a pr... 96 1e-19
Alignment gi|NP_001005782.1| small ubiquitin-related modifier 1 isoform b... 81 2e-15
>ref|NP_008867.2| small ubiquitin-related modifier 3 precursor [Homo sapiens].
Length = 103
Score = 187 bits (474), Expect = 2e-47
Identities = 91/92 (98%), Positives = 91/92 (98%)
Frame = +3
Query: 231 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 410
MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR
Sbjct: 1 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 60
Query: 411 FDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
FDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 61 FDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92
>ref|NP_008868.3| small ubiquitin-related modifier 2 isoform a precursor [Homo
sapiens].
Length = 95
Score = 180 bits (456), Expect = 3e-45
Identities = 89/93 (95%), Positives = 91/93 (97%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>ref|NP_001002255.1| small ubiquitin-related modifier 4 precursor [Homo sapiens].
Length = 95
Score = 150 bits (378), Expect = 3e-36
Identities = 76/93 (81%), Positives = 82/93 (88%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEND-HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M+ EKP E VKTEN+ HINLKVAGQDGSVVQFKIKR TPLSKLMKAYCE +GLS++QIRF
Sbjct: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RF GQPI+ D PAQLEMEDEDTIDVFQQ TGG
Sbjct: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGG 93
>ref|NP_001005849.1| small ubiquitin-related modifier 2 isoform b precursor [Homo
sapiens].
Length = 71
Score = 120 bits (300), Expect = 4e-27
Identities = 66/93 (70%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCER---------- 50
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
QLEMEDEDTIDVFQQQTGG
Sbjct: 51 --------------QLEMEDEDTIDVFQQQTGG 69
>ref|NP_001005781.1| small ubiquitin-related modifier 1 isoform a precursor [Homo
sapiens].
Length = 101
Score = 95.5 bits (236), Expect = 1e-19
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Frame = +3
Query: 237 EEKPKE---GVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
E KP G K E ++I LKV GQD S + FK+K T L KL ++YC+RQG+ M +RF
Sbjct: 5 EAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF 64
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
F+GQ I + TP +L ME+ED I+V+Q+QTGG
Sbjct: 65 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
>ref|NP_003343.1| small ubiquitin-related modifier 1 isoform a precursor [Homo
sapiens].
Length = 101
Score = 95.5 bits (236), Expect = 1e-19
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Frame = +3
Query: 237 EEKPKE---GVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
E KP G K E ++I LKV GQD S + FK+K T L KL ++YC+RQG+ M +RF
Sbjct: 5 EAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF 64
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
F+GQ I + TP +L ME+ED I+V+Q+QTGG
Sbjct: 65 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
>ref|NP_001005782.1| small ubiquitin-related modifier 1 isoform b precursor [Homo
sapiens].
Length = 76
Score = 80.9 bits (198), Expect = 2e-15
Identities = 36/72 (50%), Positives = 52/72 (72%)
Frame = +3
Query: 291 VAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINEADTPAQLEMEDE 470
++ QD S + FK+K T L KL ++YC+RQG+ M +RF F+GQ I + TP +L ME+E
Sbjct: 1 MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEE 60
Query: 471 DTIDVFQQQTGG 506
D I+V+Q+QTGG
Sbjct: 61 DVIEVYQEQTGG 72
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,877,567
Number of extensions: 1446767
Number of successful extensions: 6901
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6877
Number of HSP's successfully gapped: 7
Length of query: 435
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 329
Effective length of database: 14,802,980
Effective search space: 4870180420
Effective search space used: 4870180420
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002360
(1306 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064313.1| small ubiquitin-related modifier 3 precursor [M... 189 3e-48
Alignment gi|XP_003086189.1| PREDICTED: small ubiquitin-related modifier ... 181 9e-46
Alignment gi|NP_579932.1| small ubiquitin-related modifier 2 precursor [M... 180 2e-45
Alignment gi|XP_001480781.1| PREDICTED: small ubiquitin-related modifier ... 180 2e-45
Alignment gi|XP_003086313.1| PREDICTED: small ubiquitin-related modifier ... 180 2e-45
Alignment gi|XP_003086069.1| PREDICTED: small ubiquitin-related modifier ... 180 2e-45
Alignment gi|NP_033486.1| small ubiquitin-related modifier 1 precursor [M... 96 8e-20
Alignment gi|XP_621219.1| PREDICTED: small ubiquitin-related modifier 1 [... 77 4e-14
Alignment gi|XP_916268.1| PREDICTED: small ubiquitin-related modifier 1 [... 77 4e-14
>ref|NP_064313.1| small ubiquitin-related modifier 3 precursor [Mus musculus].
Length = 110
Score = 189 bits (481), Expect = 3e-48
Identities = 93/97 (95%), Positives = 93/97 (95%)
Frame = +3
Query: 231 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 410
MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR
Sbjct: 1 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 60
Query: 411 FDGQPINEADTPAQLEMEDEDTIDVFQQQTGGSRRAG 521
FDGQPINE DTPAQLEMEDEDTIDVFQQQTGGS G
Sbjct: 61 FDGQPINETDTPAQLEMEDEDTIDVFQQQTGGSASRG 97
>ref|XP_003086189.1| PREDICTED: small ubiquitin-related modifier 2-like [Mus musculus].
Length = 132
Score = 181 bits (460), Expect = 9e-46
Identities = 90/94 (95%), Positives = 92/94 (97%), Gaps = 1/94 (1%)
Frame = +3
Query: 228 AMSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIR 404
AM++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIR
Sbjct: 37 AMADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIR 96
Query: 405 FRFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
FRFDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 97 FRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 130
>ref|NP_579932.1| small ubiquitin-related modifier 2 precursor [Mus musculus].
Length = 95
Score = 180 bits (456), Expect = 2e-45
Identities = 89/93 (95%), Positives = 91/93 (97%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>ref|XP_001480781.1| PREDICTED: small ubiquitin-related modifier 2-like isoform 1 [Mus
musculus].
Length = 95
Score = 180 bits (456), Expect = 2e-45
Identities = 89/93 (95%), Positives = 91/93 (97%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>ref|XP_003086313.1| PREDICTED: small ubiquitin-related modifier 2-like [Mus musculus].
Length = 95
Score = 180 bits (456), Expect = 2e-45
Identities = 89/93 (95%), Positives = 91/93 (97%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>ref|XP_003086069.1| PREDICTED: small ubiquitin-related modifier 2-like [Mus musculus].
Length = 95
Score = 180 bits (456), Expect = 2e-45
Identities = 89/93 (95%), Positives = 91/93 (97%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>ref|NP_033486.1| small ubiquitin-related modifier 1 precursor [Mus musculus].
Length = 101
Score = 95.5 bits (236), Expect = 8e-20
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Frame = +3
Query: 237 EEKPKE---GVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
E KP G K E ++I LKV GQD S + FK+K T L KL ++YC+RQG+ M +RF
Sbjct: 5 EAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF 64
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
F+GQ I + TP +L ME+ED I+V+Q+QTGG
Sbjct: 65 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
>ref|XP_621219.1| PREDICTED: small ubiquitin-related modifier 1 [Mus musculus].
Length = 117
Score = 76.6 bits (187), Expect = 4e-14
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Frame = +3
Query: 237 EEKPKEGVKTEN--DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 410
E KP GV + D I +KV G+D S + F++K T L KL +Y R LS+ +RF
Sbjct: 5 EAKPSSGVLEDEKKDVIKVKVIGEDRSEIHFRLKMTTRLKKLKDSYSRRLDLSVNSLRFL 64
Query: 411 FDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
F+GQ I + T +L ME+ED I+V Q+QTGG
Sbjct: 65 FEGQKIADDHTAEELGMEEEDVIEVHQEQTGG 96
>ref|XP_916268.1| PREDICTED: small ubiquitin-related modifier 1 [Mus musculus].
Length = 117
Score = 76.6 bits (187), Expect = 4e-14
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Frame = +3
Query: 237 EEKPKEGVKTEN--DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 410
E KP GV + D I +KV G+D S + F++K T L KL +Y R LS+ +RF
Sbjct: 5 EAKPSSGVLEDEKKDVIKVKVIGEDRSEIHFRLKMTTRLKKLKDSYSRRLDLSVNSLRFL 64
Query: 411 FDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
F+GQ I + T +L ME+ED I+V Q+QTGG
Sbjct: 65 FEGQKIADDHTAEELGMEEEDVIEVHQEQTGG 96
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,656,472
Number of extensions: 1189901
Number of successful extensions: 5506
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5477
Number of HSP's successfully gapped: 9
Length of query: 435
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 331
Effective length of database: 12,493,815
Effective search space: 4135452765
Effective search space used: 4135452765
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002360
(1306 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359058.1| PREDICTED: small ubiquitin-related modifier ... 212 4e-55
Alignment gi|NP_999149.1| small ubiquitin-related modifier 2 precursor [S... 180 2e-45
Alignment gi|NP_001106147.1| small ubiquitin-related modifier 4 precursor... 167 2e-41
Alignment gi|NP_001106146.1| small ubiquitin-related modifier 1 precursor... 96 6e-20
Alignment gi|XP_003125309.2| PREDICTED: small ubiquitin-related modifier ... 87 2e-17
>ref|XP_003359058.1| PREDICTED: small ubiquitin-related modifier 3-like [Sus scrofa].
Length = 104
Score = 212 bits (539), Expect = 4e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +3
Query: 231 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 410
MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR
Sbjct: 1 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 60
Query: 411 FDGQPINEADTPAQLEMEDEDTIDVFQQQTGGSRRAGRLSGCRL 542
FDGQPINEADTPAQLEMEDEDTIDVFQQQTGGSRRAGRLSGCRL
Sbjct: 61 FDGQPINEADTPAQLEMEDEDTIDVFQQQTGGSRRAGRLSGCRL 104
>ref|NP_999149.1| small ubiquitin-related modifier 2 precursor [Sus scrofa].
Length = 95
Score = 180 bits (456), Expect = 2e-45
Identities = 89/93 (95%), Positives = 91/93 (97%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
RFDGQPINE DTPAQLEMEDEDTIDVFQQQTGG
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>ref|NP_001106147.1| small ubiquitin-related modifier 4 precursor [Sus scrofa].
Length = 95
Score = 167 bits (422), Expect = 2e-41
Identities = 82/93 (88%), Positives = 87/93 (93%), Gaps = 1/93 (1%)
Frame = +3
Query: 231 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
M++EKPKEGVKTEN DHINLKVAGQDGSV QFKI+RHTPLSKLMKAYCERQGLS+RQIRF
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIRRHTPLSKLMKAYCERQGLSIRQIRF 60
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
R DGQPINE TPAQLE+EDEDTIDV QQQTGG
Sbjct: 61 RVDGQPINETHTPAQLELEDEDTIDVLQQQTGG 93
>ref|NP_001106146.1| small ubiquitin-related modifier 1 precursor [Sus scrofa].
Length = 101
Score = 95.5 bits (236), Expect = 6e-20
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Frame = +3
Query: 237 EEKPKE---GVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
E KP G K E ++I LKV GQD S + FK+K T L KL ++YC+RQG+ M +RF
Sbjct: 5 EAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF 64
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTGG 506
F+GQ I + TP +L ME+ED I+V+Q+QTGG
Sbjct: 65 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
>ref|XP_003125309.2| PREDICTED: small ubiquitin-related modifier 1-like, partial [Sus
scrofa].
Length = 126
Score = 87.0 bits (214), Expect = 2e-17
Identities = 43/92 (46%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Frame = +3
Query: 237 EEKPKE---GVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 407
E KP G + E ++I LKV GQD S + FK+K T L KL ++YC+RQG+ M +RF
Sbjct: 30 EAKPSTEELGDEKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMISLRF 89
Query: 408 RFDGQPINEADTPAQLEMEDEDTIDVFQQQTG 503
F+GQ I + P +L ME+ED I+++Q+QTG
Sbjct: 90 LFEGQRIADNHPPKELGMEEEDGIEIYQEQTG 121
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,543,880
Number of extensions: 969507
Number of successful extensions: 4793
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4770
Number of HSP's successfully gapped: 5
Length of query: 435
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 333
Effective length of database: 8,804,438
Effective search space: 2931877854
Effective search space used: 2931877854
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002360
(1306 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1651 0.0
Sscrofa_Chr08 70 3e-09
Sscrofa_Chr05 68 1e-08
Sscrofa_ChrX 60 3e-06
Sscrofa_Chr04 60 3e-06
>Sscrofa_Chr13
|| Length = 218635234
Score = 1651 bits (833), Expect = 0.0
Identities = 853/857 (99%), Gaps = 2/857 (0%)
Strand = Plus / Minus
Query: 450 cagctggagatggaggacgaggacaccatcgacgtgttccagcagcagacggggggctcg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217407649 cagctggagatggaggacgaggacaccatcgacgtgttccagcagcagacggggggctcg 217407590
Query: 510 aggcgagccggccgcctctcggggtgccgcctctagagggactgtccccgggtcaccgcg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217407589 aggcgagccggccgcctctcggggtgccgcctctagagggactgtccccgggtcaccgcg 217407530
Query: 570 cctggttgctgttgaacggtgaagcgtgaccacgccgaccaggaaggaggctgcagacac 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217407529 cctggttgctgttgaacggtgaagcgtgaccacgccgaccaggaaggaggctgcagacac 217407470
Query: 630 ccggggaccttcagccaagggctttcctcggtgacacgcgtcgagcgcggctccgctcgg 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217407469 ccggggaccttcagccaagggctttcctcggtgacacgcgtcgagcgcggctccgctcgg 217407410
Query: 690 cccgtctcggcgggtacctttgttcgggtaaaatgcagcgccagggctttggggttggct 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217407409 cccgtctcggcgggtacctttgttcgggtaaaatgcagcgccagggctttggggttggct 217407350
Query: 750 tttcctttcatttttggtttttcttcctctgataccgtttccttcaaacccgaggcctga 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217407349 tttcctttcatttttggtttttcttcctctgataccgtttccttcaaacccgaggcctga 217407290
Query: 810 ccgtccaccctgggcgccggccccttgtcccaatcatgcagcgagctccccgcccgcccg 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217407289 ccgtccaccctgggcgccggccccttgtcccaatcatgcagcgagctccccgcccgcccg 217407230
Query: 870 gctgcgctgcgcctggggccgtgctttgggggcacagctggggtgggagacagacgcctt 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217407229 gctgcgctgcgcctggggccgtgctttgggggcacagctggggtgggagacagacgcctt 217407170
Query: 930 tcttgtgagcacaggacttttcaatgctaaatgttacacagggaagctttgacagaatag 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217407169 tcttgtgagcacaggacttttcaatgctaaatgttacacagggaagctttgacagaatag 217407110
Query: 990 agtcaagttgcagggaaaacactggaatgtttcttaaaaggtaagaagtttttcagggac 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217407109 agtcaagttgcagggaaaacactggaatgtttcttaaaaggtaagaagtttttcagggac 217407050
Query: 1050 gtggccccggggggcctggggcccaggccctaccacggcccaccgcccacggcccagcgc 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217407049 gtggccccggggggcctggggcccaggccctaccacggcccaccgcccacggcccagcgc 217406990
Query: 1110 cgctgcccgggcacagcttggtgcagagaaaaattggctttcccccttttctgagttagc 1169
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 217406989 cgctgcccgggcacagcttggtgcagag-aaaattggctttcccccttttctgagttagc 217406931
Query: 1170 aggaagtctttcccacatttctcacgggtcataatgccagggcctcagatttcttctggt 1229
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 217406930 aggaagtcattcccacatttctcacgggtcatagtgccagggcctcagatttcttctggt 217406871
Query: 1230 gttttctctctgatgagtaatgatggtctgtacataaaaaggaagatgaacattgctggg 1289
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217406870 gttttct-tctgatgagtaatgatggtctgtacataaaaaggaagatgaacattgctggg 217406812
Query: 1290 tttgcggttgggttttt 1306
|||||||||||||||||
Sbjct: 217406811 tttgcggttgggttttt 217406795
Score = 402 bits (203), Expect = e-109
Identities = 203/203 (100%)
Strand = Plus / Minus
Query: 3 tttccaaccgccaggaacctcggccggcaggccaggcgcgcgtccgacgccccggggtcg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217415481 tttccaaccgccaggaacctcggccggcaggccaggcgcgcgtccgacgccccggggtcg 217415422
Query: 63 cgcctcgtgcacgcgcgcccaccacgtgacccgcgccggccaaccggcgcgcagggattt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217415421 cgcctcgtgcacgcgcgcccaccacgtgacccgcgccggccaaccggcgcgcagggattt 217415362
Query: 123 gggggcaaagcgcggccccgagagcagttgcggcgggagagcggcgggccgagagcgtga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217415361 gggggcaaagcgcggccccgagagcagttgcggcgggagagcggcgggccgagagcgtga 217415302
Query: 183 gtcgcccgcccggcgctgctgct 205
|||||||||||||||||||||||
Sbjct: 217415301 gtcgcccgcccggcgctgctgct 217415279
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 250 aggagggggtgaagacggagaatgaccacatcaacctgaaggtggccgggcaggacggct 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217412270 aggagggggtgaagacggagaatgaccacatcaacctgaaggtggccgggcaggacggct 217412211
Query: 310 ccgtggtccagttcaagatcaagagacacacgccgctcagcaagctgatgaaggcctact 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217412210 ccgtggtccagttcaagatcaagagacacacgccgctcagcaagctgatgaaggcctact 217412151
Query: 370 gcgagcgccagg 381
||||||||||||
Sbjct: 217412150 gcgagcgccagg 217412139
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 378 cagggcttgtcgatgagacagattcggttcaggtttgacggacagccgatcaatgaagca 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217409212 cagggcttgtcgatgagacagattcggttcaggtttgacggacagccgatcaatgaagca 217409153
Query: 438 gacaccccagcacag 452
|||||||||||||||
Sbjct: 217409152 gacaccccagcacag 217409138
>Sscrofa_Chr08
|| Length = 148491826
Score = 69.9 bits (35), Expect = 3e-09
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 357 atgaaggcctactgcgagcgccagggcttgtcgatgagacagattcggttcaggtttgac 416
||||| ||||| || || || ||||| ||||| ||||| ||||| | ||| | ||||||
Sbjct: 58341670 atgaaagcctattgtgaacgacagggtttgtcaatgaggcagatcagattctgatttgac 58341729
Query: 417 ggacagccgatcaatgaagcagacaccccagcacagctggagatggaggacgaggacacc 476
|| ||||| ||||||||| |||||| || |||||| |||| |||||||| || || ||
Sbjct: 58341730 gggcagccaatcaatgaaacagacatacctgcacagttggaaatggaggatgaagataca 58341789
Query: 477 atcgacgtgttccagcagcagac 499
|| || |||||||||||||||||
Sbjct: 58341790 attgatgtgttccagcagcagac 58341812
>Sscrofa_Chr05
|| Length = 111506441
Score = 67.9 bits (34), Expect = 1e-08
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 378 cagggcttgtcgatgagacagattcggttcaggtttgacggacagccgatcaatgaagca 437
||||| ||||| ||||| ||||| | ||| | |||||||| ||||| ||||||||| ||
Sbjct: 42758696 cagggtttgtcaatgaggcagatcagattctgatttgacgggcagccaatcaatgaaaca 42758637
Query: 438 gacaccccagcacagctggagatggaggacgaggacaccatcgacgtgttccagcagcag 497
||||| || |||||| |||| ||||||| || || || || || |||||||||||||||
Sbjct: 42758636 gacacacctgcacagttggaaatggaggctgaagatacaattgatgtgttccagcagcag 42758577
Query: 498 ac 499
||
Sbjct: 42758576 ac 42758575
>Sscrofa_ChrX
|| Length = 144288218
Score = 60.0 bits (30), Expect = 3e-06
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 418 gacagccgatcaatgaagcagacaccccagcacagctggagatggaggacgaggacacca 477
||||||| ||||||||| ||||||| | |||||| |||| |||||||| || || || |
Sbjct: 31459511 gacagccaatcaatgaaacagacacatctgcacagttggaaatggaggatgaagatacaa 31459570
Query: 478 tcgacgtgttccagcagcagac 499
| || |||||||||||||||||
Sbjct: 31459571 ttgatgtgttccagcagcagac 31459592
>Sscrofa_Chr04
|| Length = 143465943
Score = 60.0 bits (30), Expect = 3e-06
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 378 cagggcttgtcgatgagacagattcggttcaggtttgacggacagccgatcaatgaagca 437
||||| ||||| ||||| ||||| | ||| | |||||||| ||||| ||||||||| ||
Sbjct: 121969829 cagggtttgtcaatgaggcagatcagattccgatttgacgggcagcccatcaatgaaaca 121969888
Query: 438 gacaccccagcacagctggagatggaggacgaggacaccatcgacgtgttccagcagcag 497
||||| || | ||| |||| | ||||||||| ||||| || | |||||||||||||||
Sbjct: 121969889 gacacacctgtgcagttggacagggaggacgaagacacaattgctgtgttccagcagcag 121969948
Query: 498 ac 499
||
Sbjct: 121969949 ac 121969950
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,999,264
Number of extensions: 309
Number of successful extensions: 309
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 8
Length of query: 1306
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1285
Effective length of database: 2,808,413,156
Effective search space: 3608810905460
Effective search space used: 3608810905460
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)