Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002367
(1180 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002697254.1| PREDICTED: hypothetical protein [Bos taurus]. 444 e-136
Alignment gi|XP_876296.3| PREDICTED: hypothetical protein [Bos taurus]. 444 e-136
>ref|XP_002697254.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 348
Score = 444 bits (1141), Expect(2) = e-136
Identities = 224/318 (70%), Positives = 236/318 (74%), Gaps = 1/318 (0%)
Frame = +2
Query: 125 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA 304
MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYP+LLA
Sbjct: 1 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLLA 60
Query: 305 VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK 484
+YKV ITLGLILLTAYFV+QPFS L PEPVLSGA+TWRSLIHHIRLMSLPITKKYMPENK
Sbjct: 61 MYKVFITLGLILLTAYFVVQPFSPLAPEPVLSGAYTWRSLIHHIRLMSLPITKKYMPENK 120
Query: 485 GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL 664
GVPL GG EDRPFPDFDPWWTNDCEQNESDP PANCTGC QKLPL+VMLLEDTP +FERL
Sbjct: 121 GVPLRGGKEDRPFPDFDPWWTNDCEQNESDPTPANCTGCAQKLPLQVMLLEDTPRRFERL 180
Query: 665 HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRS 844
HPLVIKTGQ LS+E LQ FLCQYPEVTEGFTE FF KWWRC LNRS
Sbjct: 181 HPLVIKTGQSLSTEGLQDFLCQYPEVTEGFTEGFFTKWWRCFPGRWFPFPYPWRRPLNRS 240
Query: 845 HILREXXXXXXXXXXXXXXXXXSASFFNRNLLRGVRCIGCMTCLPSAAARPCCSSFLPSV 1024
HIL E + G + + P
Sbjct: 241 HILHELFPIFTYLPFPKEASLKKCFLLQPEPIVGSKMHRMHDLFTIGSGEAMLQLLPPFQ 300
Query: 1025 PRT-CQSVAMPLEPGECG 1075
R+ CQSVAMPLEPG+ G
Sbjct: 301 CRSHCQSVAMPLEPGDIG 318
Score = 61.2 bits (147), Expect(2) = e-136
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = +3
Query: 1065 GNVGYAGATHWKVYIIXRGVQPLVICDGNIVPE 1163
G++GYAGATHWKVYII RGVQPLV+CDG + E
Sbjct: 315 GDIGYAGATHWKVYIIARGVQPLVVCDGTTLSE 347
>ref|XP_876296.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 348
Score = 444 bits (1141), Expect(2) = e-136
Identities = 224/318 (70%), Positives = 236/318 (74%), Gaps = 1/318 (0%)
Frame = +2
Query: 125 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA 304
MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYP+LLA
Sbjct: 1 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLLA 60
Query: 305 VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK 484
+YKV ITLGLILLTAYFV+QPFS L PEPVLSGA+TWRSLIHHIRLMSLPITKKYMPENK
Sbjct: 61 MYKVFITLGLILLTAYFVVQPFSPLAPEPVLSGAYTWRSLIHHIRLMSLPITKKYMPENK 120
Query: 485 GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL 664
GVPL GG EDRPFPDFDPWWTNDCEQNESDP PANCTGC QKLPL+VMLLEDTP +FERL
Sbjct: 121 GVPLRGGKEDRPFPDFDPWWTNDCEQNESDPTPANCTGCAQKLPLQVMLLEDTPRRFERL 180
Query: 665 HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRS 844
HPLVIKTGQ LS+E LQ FLCQYPEVTEGFTE FF KWWRC LNRS
Sbjct: 181 HPLVIKTGQSLSTEGLQDFLCQYPEVTEGFTEGFFTKWWRCFPGRWFPFPYPWRRPLNRS 240
Query: 845 HILREXXXXXXXXXXXXXXXXXSASFFNRNLLRGVRCIGCMTCLPSAAARPCCSSFLPSV 1024
HIL E + G + + P
Sbjct: 241 HILHELFPIFTYLPFPKEASLKKCFLLQPEPIVGSKMHRMHDLFTIGSGEAMLQLLPPFQ 300
Query: 1025 PRT-CQSVAMPLEPGECG 1075
R+ CQSVAMPLEPG+ G
Sbjct: 301 CRSHCQSVAMPLEPGDIG 318
Score = 61.2 bits (147), Expect(2) = e-136
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = +3
Query: 1065 GNVGYAGATHWKVYIIXRGVQPLVICDGNIVPE 1163
G++GYAGATHWKVYII RGVQPLV+CDG + E
Sbjct: 315 GDIGYAGATHWKVYIIARGVQPLVVCDGTTLSE 347
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,275,690
Number of extensions: 1348095
Number of successful extensions: 4278
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4276
Number of HSP's successfully gapped: 8
Length of query: 393
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 289
Effective length of database: 14,240,222
Effective search space: 4115424158
Effective search space used: 4115424158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002367
(1180 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532127.1| PREDICTED: similar to cDNA sequence BC004004 is... 452 e-134
Alignment gi|XP_864615.1| PREDICTED: similar to cDNA sequence BC004004 is... 89 4e-25
>ref|XP_532127.1| PREDICTED: similar to cDNA sequence BC004004 isoform 1 [Canis
familiaris].
Length = 346
Score = 452 bits (1163), Expect(2) = e-134
Identities = 234/323 (72%), Positives = 244/323 (75%), Gaps = 6/323 (1%)
Frame = +2
Query: 125 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA 304
MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYP+L+A
Sbjct: 1 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLIA 60
Query: 305 VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK 484
+YKVL+TLGLILLTAYFVIQPFS LPPEPVLSGAHTWRSLIHHIRLMSLPI KKYMPENK
Sbjct: 61 IYKVLVTLGLILLTAYFVIQPFSPLPPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMPENK 120
Query: 485 GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL 664
GVPLHGGDEDR FPDFDPWWTN CEQNES+PIPANCTGC QKLPLKVMLLEDTP KFER
Sbjct: 121 GVPLHGGDEDRLFPDFDPWWTNSCEQNESNPIPANCTGCAQKLPLKVMLLEDTPKKFERF 180
Query: 665 HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRS 844
HPLVIKTGQ L SEELQ FLC YPEVTEGF E FF KWWRC LNRS
Sbjct: 181 HPLVIKTGQLLLSEELQHFLCWYPEVTEGFNEGFFTKWWRCFPERWFPFPYPWRRPLNRS 240
Query: 845 HILREXXXXXXXXXXXXXXXXXSASFFNRNLLRGVRCIGC----MTCLPSAAARPCCSSF 1012
HILRE AS LL+ +G M L + F
Sbjct: 241 HILRE-----LFPVFTYLPFPKDASLKKCFLLQPEPIVGSKMHRMHDLFIIGSGEAMLQF 295
Query: 1013 LPSVP--RTCQSVAMPLEPGECG 1075
+P V R CQSVAMPLEPG+ G
Sbjct: 296 IPPVQCRRHCQSVAMPLEPGDIG 318
Score = 45.1 bits (105), Expect(2) = e-134
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = +3
Query: 1065 GNVGYAGATHWKVYIIXRGVQPLVICDGNIVPE 1163
G++GYAGA K Y+I RGVQPLVICDG + E
Sbjct: 315 GDIGYAGAR--KAYVIARGVQPLVICDGTTLSE 345
>ref|XP_864615.1| PREDICTED: similar to cDNA sequence BC004004 isoform 2 [Canis
familiaris].
Length = 167
Score = 89.0 bits (219), Expect(2) = 4e-25
Identities = 60/138 (43%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Frame = +2
Query: 680 KTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRSHILRE 859
+TGQ L SEELQ FLC YPEVTEGF E FF KWWRC LNRSHILRE
Sbjct: 7 QTGQLLLSEELQHFLCWYPEVTEGFNEGFFTKWWRCFPERWFPFPYPWRRPLNRSHILRE 66
Query: 860 XXXXXXXXXXXXXXXXXSASFFNRNLLRGVRCIGC----MTCLPSAAARPCCSSFLPSVP 1027
AS LL+ +G M L + F+P V
Sbjct: 67 -----LFPVFTYLPFPKDASLKKCFLLQPEPIVGSKMHRMHDLFIIGSGEAMLQFIPPVQ 121
Query: 1028 --RTCQSVAMPLEPGECG 1075
R CQSVAMPLEPG+ G
Sbjct: 122 CRRHCQSVAMPLEPGDIG 139
Score = 45.1 bits (105), Expect(2) = 4e-25
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = +3
Query: 1065 GNVGYAGATHWKVYIIXRGVQPLVICDGNIVPE 1163
G++GYAGA K Y+I RGVQPLVICDG + E
Sbjct: 136 GDIGYAGAR--KAYVIARGVQPLVICDGTTLSE 166
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,280,524
Number of extensions: 1387156
Number of successful extensions: 4140
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4133
Number of HSP's successfully gapped: 8
Length of query: 393
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 288
Effective length of database: 15,374,224
Effective search space: 4427776512
Effective search space used: 4427776512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002367
(1180 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689947.2| hypothetical protein LOC221477 [Homo sapiens]. 447 e-135
>ref|NP_689947.2| hypothetical protein LOC221477 [Homo sapiens].
Length = 354
Score = 447 bits (1151), Expect(2) = e-135
Identities = 228/329 (69%), Positives = 245/329 (74%), Gaps = 5/329 (1%)
Frame = +2
Query: 104 MDFVLGDMDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPP 283
MDF+L DMDLAANE+SIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQR PP
Sbjct: 1 MDFILEDMDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPP 60
Query: 284 QYPVLLAVYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITK 463
QYP+L+ VYKVL TLGLILLTAYFVIQPFS L PEPVLSGAHTWRSLIHHIRLMSLPI K
Sbjct: 61 QYPLLIVVYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAK 120
Query: 464 KYMPENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDT 643
KYM ENKGVPLHGGDEDRPFPDFDPWWTNDCEQNES+PIPANCTGC QK LKVMLLED
Sbjct: 121 KYMSENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQK-HLKVMLLEDA 179
Query: 644 PVKFERLHPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXX 823
P KFERLHPLVIKTG+PL EE+Q FLCQYPE TEGF+E FFAKWWRC
Sbjct: 180 PRKFERLHPLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPW 239
Query: 824 XXXLNRSHILREXXXXXXXXXXXXXXXXXSASFFNRNLLRGVRCIGCMTCLPSAAARPCC 1003
LNRS +LRE SF + + G + M +P
Sbjct: 240 RRPLNRSQMLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSK----MHKMPDLFIIGSG 295
Query: 1004 SSFLPSVP-----RTCQSVAMPLEPGECG 1075
+ L +P R CQSVAMP+EPG+ G
Sbjct: 296 EAMLQLIPPFQCRRHCQSVAMPIEPGDIG 324
Score = 54.7 bits (130), Expect(2) = e-135
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +3
Query: 1065 GNVGYAGATHWKVYIIXRGVQPLVICDGNIVPE 1163
G++GY THWKVY+I RGVQPLVICDG E
Sbjct: 321 GDIGYVDTTHWKVYVIARGVQPLVICDGTAFSE 353
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,431,419
Number of extensions: 1367764
Number of successful extensions: 4135
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4118
Number of HSP's successfully gapped: 2
Length of query: 393
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 288
Effective length of database: 14,835,944
Effective search space: 4272751872
Effective search space used: 4272751872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002367
(1180 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_085038.3| hypothetical protein LOC80748 [Mus musculus]. 414 e-125
>ref|NP_085038.3| hypothetical protein LOC80748 [Mus musculus].
Length = 348
Score = 414 bits (1064), Expect(2) = e-125
Identities = 211/318 (66%), Positives = 229/318 (72%), Gaps = 1/318 (0%)
Frame = +2
Query: 125 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA 304
MDLAANE+SIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYP+L+A
Sbjct: 1 MDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLIA 60
Query: 305 VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK 484
VYKVL+TLGLIL TAYFVIQPFSSL PEPVLSGA++WRSL+HHIRL+SLPITKKYMPENK
Sbjct: 61 VYKVLLTLGLILFTAYFVIQPFSSLAPEPVLSGANSWRSLVHHIRLVSLPITKKYMPENK 120
Query: 485 GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL 664
GVPL G ED+PFPDFDPW + +CEQNES+PIPANCTGC Q LPLKV L EDTP FERL
Sbjct: 121 GVPLQGSQEDKPFPDFDPWSSYNCEQNESEPIPANCTGCAQILPLKVTLPEDTPKNFERL 180
Query: 665 HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRS 844
PLVIKTGQPLSS E+Q F CQYPEVTEGFTE FF KWWRC LNRS
Sbjct: 181 RPLVIKTGQPLSSAEIQSFSCQYPEVTEGFTEGFFTKWWRCFPERWFPFPYPWRRPLNRS 240
Query: 845 HILREXXXXXXXXXXXXXXXXXSASFFNRNLLRGVRCIGCMTCLPSAAARPCCSSFLPSV 1024
ILRE + G + + P
Sbjct: 241 QILRELFPVFTQLPFPKDSSLNKCFLIQPEPVVGSKMHKVHDLFTLGSGEAMLQLIPPFQ 300
Query: 1025 PRT-CQSVAMPLEPGECG 1075
RT CQSVAMP+E G+ G
Sbjct: 301 CRTHCQSVAMPIESGDIG 318
Score = 55.5 bits (132), Expect(2) = e-125
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +3
Query: 1065 GNVGYAGATHWKVYIIXRGVQPLVICDGNIVPE 1163
G++GYA A HWKVYI+ RGVQPLVICDG + +
Sbjct: 315 GDIGYADAAHWKVYIVARGVQPLVICDGTTLSD 347
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,112,401
Number of extensions: 1149500
Number of successful extensions: 3699
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3659
Number of HSP's successfully gapped: 4
Length of query: 393
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 290
Effective length of database: 12,523,851
Effective search space: 3631916790
Effective search space used: 3631916790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002367
(1180 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128415.1| PREDICTED: uncharacterized protein C6orf89 h... 501 e-155
>ref|XP_003128415.1| PREDICTED: uncharacterized protein C6orf89 homolog isoform 2 [Sus
scrofa].
Length = 355
Score = 501 bits (1290), Expect(2) = e-155
Identities = 254/326 (77%), Positives = 261/326 (80%), Gaps = 2/326 (0%)
Frame = +2
Query: 104 MDFVLGDMDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPP 283
MDFVLGDMDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPP
Sbjct: 1 MDFVLGDMDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPP 60
Query: 284 QYPVLLAVYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITK 463
QYPVLLAVYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITK
Sbjct: 61 QYPVLLAVYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITK 120
Query: 464 KYMPENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDT 643
KYMPENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDT
Sbjct: 121 KYMPENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDT 180
Query: 644 PVKFERLHPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXX 823
PVKFERLHPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRC
Sbjct: 181 PVKFERLHPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCFPHRWFPFPYPW 240
Query: 824 XXXLNRSHILREXXXXXXXXXXXXXXXXXSASFFNRNLLRGVRCIGCMTCLPSAAARPCC 1003
LNRSHILRE + G + + M L + +
Sbjct: 241 RRPLNRSHILRELFPVFTFLPFPKDASLKKCFLLQPEPIAGSK-MHRMHDLFTIGSGEAM 299
Query: 1004 SSFLP--SVPRTCQSVAMPLEPGECG 1075
+P R CQSVAMPLEPG+ G
Sbjct: 300 LQLIPPFQCRRHCQSVAMPLEPGDVG 325
Score = 65.9 bits (159), Expect(2) = e-155
Identities = 29/34 (85%), Positives = 30/34 (88%)
Frame = +3
Query: 1065 GNVGYAGATHWKVYIIXRGVQPLVICDGNIVPEP 1166
G+VGYAGATHWKVYII RGVQPLVICDG V EP
Sbjct: 322 GDVGYAGATHWKVYIIARGVQPLVICDGTTVSEP 355
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,434,794
Number of extensions: 862762
Number of successful extensions: 2528
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2526
Number of HSP's successfully gapped: 4
Length of query: 393
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,829,335
Effective search space: 2578165820
Effective search space used: 2578165820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002367
(1180 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 428 e-117
>Sscrofa_Chr07
|| Length = 134764511
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Plus
Query: 312 aggtcctcataaccctgggattaatcttgctcactgcctactttgtgattcaacctttca 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37463609 aggtcctcataaccctgggattaatcttgctcactgcctactttgtgattcaacctttca 37463668
Query: 372 gctcattaccacctgaaccagtgctttctggagctcacacctggcgttcactcatccatc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37463669 gctcattaccacctgaaccagtgctttctggagctcacacctggcgttcactcatccatc 37463728
Query: 432 acatccggctgatgtctttgcccattaccaagaagtacatgccagaaaataaaggagttc 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37463729 acatccggctgatgtctttgcccattaccaagaagtacatgccagaaaataaaggagttc 37463788
Query: 492 ctttgcatgggggtgatgaagacagaccctttccag 527
||||||||||||||||||||||||||||||||||||
Sbjct: 37463789 ctttgcatgggggtgatgaagacagaccctttccag 37463824
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 106 ggattttgtattaggagacatggatcttgctgctaatgagctcagcatttatgacaaact 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37462945 ggattttgtattaggagacatggatcttgctgctaatgagctcagcatttatgacaaact 37463004
Query: 166 ttcggagactgtggatttagtgagacagacaggccatcagtgtggcatgtcagagaaggc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37463005 ttcggagactgtggatttagtgagacagacaggccatcagtgtggcatgtcagagaaggc 37463064
Query: 226 aattgaaaaatttatcagacagctgctggaaaagaatgaacctcagagggggccaccaca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37463065 aattgaaaaatttatcagacagctgctggaaaagaatgaacctcagagggggccaccaca 37463124
Query: 286 gtatcccgtccttctagccgtgtacaaggt 315
||||||||||||||||||||||||||||||
Sbjct: 37463125 gtatcccgtccttctagccgtgtacaaggt 37463154
Score = 305 bits (154), Expect = 3e-80
Identities = 157/158 (99%)
Strand = Plus / Plus
Query: 525 cagactttgacccctggtggacaaatgactgtgagcagaatgagtcagaccccatccctg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37471721 cagactttgacccctggtggacaaatgactgtgagcagaatgagtcagaccccatccctg 37471780
Query: 585 ccaactgcaccggctgcacccagaagttgcccctaaaagtaatgctcctggaagacaccc 644
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 37471781 ccaactgcaccggctgcacccagaagttgcccctgaaagtaatgctcctggaagacaccc 37471840
Query: 645 cagtgaagtttgagagactccatcctctggtgatcaag 682
||||||||||||||||||||||||||||||||||||||
Sbjct: 37471841 cagtgaagtttgagagactccatcctctggtgatcaag 37471878
Score = 287 bits (145), Expect = 7e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 679 caagaccggacagcccctgtcatctgaggagcttcagcagtttttgtgccagtaccctga 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37472000 caagaccggacagcccctgtcatctgaggagcttcagcagtttttgtgccagtaccctga 37472059
Query: 739 ggtgacagaaggcttcaccgaagagtttttcgccaagtggtggcgctgctttcctcaccg 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37472060 ggtgacagaaggcttcaccgaagagtttttcgccaagtggtggcgctgctttcctcaccg 37472119
Query: 799 gtggttcccatttccttatccctgg 823
|||||||||||||||||||||||||
Sbjct: 37472120 gtggttcccatttccttatccctgg 37472144
Score = 244 bits (123), Expect = 9e-62
Identities = 130/131 (99%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 822 ggagaagacctctgaacagatcacacattttacgtgagctttttcctgtcttcaccttcc 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37474243 ggagaagacctctgaacagatcacacattttacgtgagctttttcctgtcttcaccttcc 37474302
Query: 882 tgccgtttcc-aaagacgcctccttgaaaaagtgcttccttcttcaaccggaacctattg 940
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37474303 tgccgtttccaaaagacgcctccttgaaaaagtgcttccttcttcaaccggaacctattg 37474362
Query: 941 cggggagtaag 951
|||||||||||
Sbjct: 37474363 cggggagtaag 37474373
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 gcttccgggttacgcgcccggaatcaggaagttgtcggcttcttcacgcccggcggcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37451369 gcttccgggttacgcgcccggaatcaggaagttgtcggcttcttcacgcccggcggcttg 37451428
Query: 61 ctgtctccgaggcgggaggagcccgagggggcacggtccccgcatg 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37451429 ctgtctccgaggcgggaggagcccgagggggcacggtccccgcatg 37451474
Score = 184 bits (93), Expect = 7e-44
Identities = 116/121 (95%), Gaps = 2/121 (1%)
Strand = Plus / Plus
Query: 950 agatgcataggatgcatgacctgtttaccatcggcagcggcgaggccatgttgcagctca 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37478135 agatgcataggatgcatgacctgtttaccatcggcagcggcgaggccatgttgcagctca 37478194
Query: 1010 ttcctcccttcc-gtgcc-aagaacctgccaatctgtggcgatgccactggaaccggggg 1067
|||||||||||| ||||| |||| ||||||||||||||||||||||||||| |||||||
Sbjct: 37478195 ttcctcccttccagtgccgaagacactgccaatctgtggcgatgccactggagccggggg 37478254
Query: 1068 a 1068
|
Sbjct: 37478255 a 37478255
Score = 151 bits (76), Expect = 1e-33
Identities = 99/107 (92%)
Strand = Plus / Plus
Query: 1074 ggctatgctggtgccactcactggaaggtctacattatanccagaggggtccagcctttg 1133
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 37482121 ggctatgctggtgccactcactggaaggtctacattatagccagaggggtccagcctttg 37482180
Query: 1134 gtcatctgcgatggaaacatcgttcccgaaccgtaggaaaccactgc 1180
|||||||||||||||| || ||| | ||||| |||||||| |||||
Sbjct: 37482181 gtcatctgcgatggaaccaccgtctcagaaccataggaaacaactgc 37482227
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,908,056
Number of extensions: 224
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 8
Length of query: 1180
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1159
Effective length of database: 2,808,413,156
Effective search space: 3254950847804
Effective search space used: 3254950847804
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)