Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002369
(2010 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002697254.1| PREDICTED: hypothetical protein [Bos taurus]. 636 0.0
Alignment gi|XP_876296.3| PREDICTED: hypothetical protein [Bos taurus]. 636 0.0
>ref|XP_002697254.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 348
Score = 636 bits (1641), Expect = 0.0
Identities = 301/347 (86%), Positives = 315/347 (90%)
Frame = +1
Query: 91 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA 270
MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYP+LLA
Sbjct: 1 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLLA 60
Query: 271 VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK 450
+YKV ITLGLILLTAYFV+QPFS L PEPVLSGA+TWRSLIHHIRLMSLPITKKYMPENK
Sbjct: 61 MYKVFITLGLILLTAYFVVQPFSPLAPEPVLSGAYTWRSLIHHIRLMSLPITKKYMPENK 120
Query: 451 GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL 630
GVPL GG EDRPFPDFDPWWTNDCEQNESDP PANCTGC QKLPL+VMLLEDTP +FERL
Sbjct: 121 GVPLRGGKEDRPFPDFDPWWTNDCEQNESDPTPANCTGCAQKLPLQVMLLEDTPRRFERL 180
Query: 631 HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRS 810
HPLVIKTGQ LS+E LQ FLCQYPEVTEGFTE FF KWWRC LNRS
Sbjct: 181 HPLVIKTGQSLSTEGLQDFLCQYPEVTEGFTEGFFTKWWRCFPGRWFPFPYPWRRPLNRS 240
Query: 811 HILRELFPVFTFLPFPKDASLKKCFLLQPEPIAGSKMHRMHDLFTIGSGEAMLQLIPPFQ 990
HIL ELFP+FT+LPFPK+ASLKKCFLLQPEPI GSKMHRMHDLFTIGSGEAMLQL+PPFQ
Sbjct: 241 HILHELFPIFTYLPFPKEASLKKCFLLQPEPIVGSKMHRMHDLFTIGSGEAMLQLLPPFQ 300
Query: 991 CRRHCQSVAMPLEPGDVGYAGATHWKVYIIARGVQPLVICDGTIVSE 1131
CR HCQSVAMPLEPGD+GYAGATHWKVYIIARGVQPLV+CDGT +SE
Sbjct: 301 CRSHCQSVAMPLEPGDIGYAGATHWKVYIIARGVQPLVVCDGTTLSE 347
>ref|XP_876296.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 348
Score = 636 bits (1641), Expect = 0.0
Identities = 301/347 (86%), Positives = 315/347 (90%)
Frame = +1
Query: 91 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA 270
MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYP+LLA
Sbjct: 1 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLLA 60
Query: 271 VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK 450
+YKV ITLGLILLTAYFV+QPFS L PEPVLSGA+TWRSLIHHIRLMSLPITKKYMPENK
Sbjct: 61 MYKVFITLGLILLTAYFVVQPFSPLAPEPVLSGAYTWRSLIHHIRLMSLPITKKYMPENK 120
Query: 451 GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL 630
GVPL GG EDRPFPDFDPWWTNDCEQNESDP PANCTGC QKLPL+VMLLEDTP +FERL
Sbjct: 121 GVPLRGGKEDRPFPDFDPWWTNDCEQNESDPTPANCTGCAQKLPLQVMLLEDTPRRFERL 180
Query: 631 HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRS 810
HPLVIKTGQ LS+E LQ FLCQYPEVTEGFTE FF KWWRC LNRS
Sbjct: 181 HPLVIKTGQSLSTEGLQDFLCQYPEVTEGFTEGFFTKWWRCFPGRWFPFPYPWRRPLNRS 240
Query: 811 HILRELFPVFTFLPFPKDASLKKCFLLQPEPIAGSKMHRMHDLFTIGSGEAMLQLIPPFQ 990
HIL ELFP+FT+LPFPK+ASLKKCFLLQPEPI GSKMHRMHDLFTIGSGEAMLQL+PPFQ
Sbjct: 241 HILHELFPIFTYLPFPKEASLKKCFLLQPEPIVGSKMHRMHDLFTIGSGEAMLQLLPPFQ 300
Query: 991 CRRHCQSVAMPLEPGDVGYAGATHWKVYIIARGVQPLVICDGTIVSE 1131
CR HCQSVAMPLEPGD+GYAGATHWKVYIIARGVQPLV+CDGT +SE
Sbjct: 301 CRSHCQSVAMPLEPGDIGYAGATHWKVYIIARGVQPLVVCDGTTLSE 347
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 73,135,454
Number of extensions: 2324151
Number of successful extensions: 7174
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7165
Number of HSP's successfully gapped: 2
Length of query: 670
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 561
Effective length of database: 14,074,782
Effective search space: 7895952702
Effective search space used: 7895952702
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002369
(2010 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532127.1| PREDICTED: similar to cDNA sequence BC004004 is... 623 e-178
Alignment gi|XP_864615.1| PREDICTED: similar to cDNA sequence BC004004 is... 259 7e-69
>ref|XP_532127.1| PREDICTED: similar to cDNA sequence BC004004 isoform 1 [Canis
familiaris].
Length = 346
Score = 623 bits (1606), Expect = e-178
Identities = 300/347 (86%), Positives = 309/347 (89%)
Frame = +1
Query: 91 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA 270
MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYP+L+A
Sbjct: 1 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLIA 60
Query: 271 VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK 450
+YKVL+TLGLILLTAYFVIQPFS LPPEPVLSGAHTWRSLIHHIRLMSLPI KKYMPENK
Sbjct: 61 IYKVLVTLGLILLTAYFVIQPFSPLPPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMPENK 120
Query: 451 GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL 630
GVPLHGGDEDR FPDFDPWWTN CEQNES+PIPANCTGC QKLPLKVMLLEDTP KFER
Sbjct: 121 GVPLHGGDEDRLFPDFDPWWTNSCEQNESNPIPANCTGCAQKLPLKVMLLEDTPKKFERF 180
Query: 631 HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRS 810
HPLVIKTGQ L SEELQ FLC YPEVTEGF E FF KWWRC LNRS
Sbjct: 181 HPLVIKTGQLLLSEELQHFLCWYPEVTEGFNEGFFTKWWRCFPERWFPFPYPWRRPLNRS 240
Query: 811 HILRELFPVFTFLPFPKDASLKKCFLLQPEPIAGSKMHRMHDLFTIGSGEAMLQLIPPFQ 990
HILRELFPVFT+LPFPKDASLKKCFLLQPEPI GSKMHRMHDLF IGSGEAMLQ IPP Q
Sbjct: 241 HILRELFPVFTYLPFPKDASLKKCFLLQPEPIVGSKMHRMHDLFIIGSGEAMLQFIPPVQ 300
Query: 991 CRRHCQSVAMPLEPGDVGYAGATHWKVYIIARGVQPLVICDGTIVSE 1131
CRRHCQSVAMPLEPGD+GYAGA K Y+IARGVQPLVICDGT +SE
Sbjct: 301 CRRHCQSVAMPLEPGDIGYAGAR--KAYVIARGVQPLVICDGTTLSE 345
>ref|XP_864615.1| PREDICTED: similar to cDNA sequence BC004004 isoform 2 [Canis
familiaris].
Length = 167
Score = 259 bits (662), Expect = 7e-69
Identities = 126/162 (77%), Positives = 131/162 (80%)
Frame = +1
Query: 646 KTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRSHILRE 825
+TGQ L SEELQ FLC YPEVTEGF E FF KWWRC LNRSHILRE
Sbjct: 7 QTGQLLLSEELQHFLCWYPEVTEGFNEGFFTKWWRCFPERWFPFPYPWRRPLNRSHILRE 66
Query: 826 LFPVFTFLPFPKDASLKKCFLLQPEPIAGSKMHRMHDLFTIGSGEAMLQLIPPFQCRRHC 1005
LFPVFT+LPFPKDASLKKCFLLQPEPI GSKMHRMHDLF IGSGEAMLQ IPP QCRRHC
Sbjct: 67 LFPVFTYLPFPKDASLKKCFLLQPEPIVGSKMHRMHDLFIIGSGEAMLQFIPPVQCRRHC 126
Query: 1006 QSVAMPLEPGDVGYAGATHWKVYIIARGVQPLVICDGTIVSE 1131
QSVAMPLEPGD+GYAGA K Y+IARGVQPLVICDGT +SE
Sbjct: 127 QSVAMPLEPGDIGYAGAR--KAYVIARGVQPLVICDGTTLSE 166
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,783,582
Number of extensions: 2132885
Number of successful extensions: 7235
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7228
Number of HSP's successfully gapped: 2
Length of query: 670
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 561
Effective length of database: 15,240,880
Effective search space: 8550133680
Effective search space used: 8550133680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002369
(2010 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689947.2| hypothetical protein LOC221477 [Homo sapiens]. 613 e-175
>ref|NP_689947.2| hypothetical protein LOC221477 [Homo sapiens].
Length = 354
Score = 613 bits (1582), Expect = e-175
Identities = 293/354 (82%), Positives = 307/354 (86%)
Frame = +1
Query: 70 MDFVLGDMDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPP 249
MDF+L DMDLAANE+SIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQR PP
Sbjct: 1 MDFILEDMDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPP 60
Query: 250 QYPVLLAVYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITK 429
QYP+L+ VYKVL TLGLILLTAYFVIQPFS L PEPVLSGAHTWRSLIHHIRLMSLPI K
Sbjct: 61 QYPLLIVVYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAK 120
Query: 430 KYMPENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDT 609
KYM ENKGVPLHGGDEDRPFPDFDPWWTNDCEQNES+PIPANCTGC QK LKVMLLED
Sbjct: 121 KYMSENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQK-HLKVMLLEDA 179
Query: 610 PVKFERLHPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXX 789
P KFERLHPLVIKTG+PL EE+Q FLCQYPE TEGF+E FFAKWWRC
Sbjct: 180 PRKFERLHPLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPW 239
Query: 790 XXXLNRSHILRELFPVFTFLPFPKDASLKKCFLLQPEPIAGSKMHRMHDLFTIGSGEAML 969
LNRS +LRELFPVFT LPFPKDASL KC L PEP+ GSKMH+M DLF IGSGEAML
Sbjct: 240 RRPLNRSQMLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAML 299
Query: 970 QLIPPFQCRRHCQSVAMPLEPGDVGYAGATHWKVYIIARGVQPLVICDGTIVSE 1131
QLIPPFQCRRHCQSVAMP+EPGD+GY THWKVY+IARGVQPLVICDGT SE
Sbjct: 300 QLIPPFQCRRHCQSVAMPIEPGDIGYVDTTHWKVYVIARGVQPLVICDGTAFSE 353
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,418,060
Number of extensions: 2073756
Number of successful extensions: 7042
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7014
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 561
Effective length of database: 14,704,088
Effective search space: 8248993368
Effective search space used: 8248993368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002369
(2010 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_085038.3| hypothetical protein LOC80748 [Mus musculus]. 592 e-169
>ref|NP_085038.3| hypothetical protein LOC80748 [Mus musculus].
Length = 348
Score = 592 bits (1527), Expect = e-169
Identities = 280/347 (80%), Positives = 304/347 (87%)
Frame = +1
Query: 91 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA 270
MDLAANE+SIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYP+L+A
Sbjct: 1 MDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLIA 60
Query: 271 VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK 450
VYKVL+TLGLIL TAYFVIQPFSSL PEPVLSGA++WRSL+HHIRL+SLPITKKYMPENK
Sbjct: 61 VYKVLLTLGLILFTAYFVIQPFSSLAPEPVLSGANSWRSLVHHIRLVSLPITKKYMPENK 120
Query: 451 GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL 630
GVPL G ED+PFPDFDPW + +CEQNES+PIPANCTGC Q LPLKV L EDTP FERL
Sbjct: 121 GVPLQGSQEDKPFPDFDPWSSYNCEQNESEPIPANCTGCAQILPLKVTLPEDTPKNFERL 180
Query: 631 HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRS 810
PLVIKTGQPLSS E+Q F CQYPEVTEGFTE FF KWWRC LNRS
Sbjct: 181 RPLVIKTGQPLSSAEIQSFSCQYPEVTEGFTEGFFTKWWRCFPERWFPFPYPWRRPLNRS 240
Query: 811 HILRELFPVFTFLPFPKDASLKKCFLLQPEPIAGSKMHRMHDLFTIGSGEAMLQLIPPFQ 990
ILRELFPVFT LPFPKD+SL KCFL+QPEP+ GSKMH++HDLFT+GSGEAMLQLIPPFQ
Sbjct: 241 QILRELFPVFTQLPFPKDSSLNKCFLIQPEPVVGSKMHKVHDLFTLGSGEAMLQLIPPFQ 300
Query: 991 CRRHCQSVAMPLEPGDVGYAGATHWKVYIIARGVQPLVICDGTIVSE 1131
CR HCQSVAMP+E GD+GYA A HWKVYI+ARGVQPLVICDGT +S+
Sbjct: 301 CRTHCQSVAMPIESGDIGYADAAHWKVYIVARGVQPLVICDGTTLSD 347
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,364,378
Number of extensions: 1752481
Number of successful extensions: 5719
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5710
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 562
Effective length of database: 12,373,671
Effective search space: 6954003102
Effective search space used: 6954003102
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002369
(2010 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128415.1| PREDICTED: uncharacterized protein C6orf89 h... 704 0.0
>ref|XP_003128415.1| PREDICTED: uncharacterized protein C6orf89 homolog isoform 2 [Sus
scrofa].
Length = 355
Score = 704 bits (1818), Expect = 0.0
Identities = 339/355 (95%), Positives = 339/355 (95%)
Frame = +1
Query: 70 MDFVLGDMDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPP 249
MDFVLGDMDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPP
Sbjct: 1 MDFVLGDMDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPP 60
Query: 250 QYPVLLAVYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITK 429
QYPVLLAVYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITK
Sbjct: 61 QYPVLLAVYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITK 120
Query: 430 KYMPENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDT 609
KYMPENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDT
Sbjct: 121 KYMPENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDT 180
Query: 610 PVKFERLHPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXX 789
PVKFERLHPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRC
Sbjct: 181 PVKFERLHPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCFPHRWFPFPYPW 240
Query: 790 XXXLNRSHILRELFPVFTFLPFPKDASLKKCFLLQPEPIAGSKMHRMHDLFTIGSGEAML 969
LNRSHILRELFPVFTFLPFPKDASLKKCFLLQPEPIAGSKMHRMHDLFTIGSGEAML
Sbjct: 241 RRPLNRSHILRELFPVFTFLPFPKDASLKKCFLLQPEPIAGSKMHRMHDLFTIGSGEAML 300
Query: 970 QLIPPFQCRRHCQSVAMPLEPGDVGYAGATHWKVYIIARGVQPLVICDGTIVSEP 1134
QLIPPFQCRRHCQSVAMPLEPGDVGYAGATHWKVYIIARGVQPLVICDGT VSEP
Sbjct: 301 QLIPPFQCRRHCQSVAMPLEPGDVGYAGATHWKVYIIARGVQPLVICDGTTVSEP 355
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,513,893
Number of extensions: 1905344
Number of successful extensions: 4439
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4429
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 564
Effective length of database: 8,704,850
Effective search space: 4909535400
Effective search space used: 4909535400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002369
(2010 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1162 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1162 bits (586), Expect = 0.0
Identities = 641/666 (96%)
Strand = Plus / Plus
Query: 1042 ggctatgctggtgccactcactggaaggtctacattatagccagaggggtccagcctttg 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37482121 ggctatgctggtgccactcactggaaggtctacattatagccagaggggtccagcctttg 37482180
Query: 1102 gtcatctgcgatggaaccatcgtctcagaaccgtaggaaacaactgcatgaaagaacagc 1161
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 37482181 gtcatctgcgatggaaccaccgtctcagaaccataggaaacaactgcatgaaagaacagc 37482240
Query: 1162 tctgagagctgaagaccagattgaaaggggggaaatnnnnnnnnnnnnnnnnnnnncctg 1221
|||||||||||||||||||||||||||||||||||| ||||
Sbjct: 37482241 tctgagagctgaagaccagattgaaaggggggaaataaaaacaaacaaacaaaaaccctg 37482300
Query: 1222 atgaaaccacttcccaggggttggtcacttagttacctgccccatgcatgcatgtgtgag 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37482301 atgaaaccacttcccaggggttggtcacttagttacctgccccatgcatgcatgtgtgag 37482360
Query: 1282 ccagctgtgcgctggaggcaaaggccagagcttggtcctcccagctcttctagcccagct 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37482361 ccagctgtgcgctggaggcaaaggccagagcttggtcctcccagctcttctagcccagct 37482420
Query: 1342 gcttggcccggactttgccaatatccatctgtgagagactggcctcttccaggccttttg 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37482421 gcttggcccggactttgccaatatccatctgtgagagactggcctcttccaggccttttg 37482480
Query: 1402 gtaccgaagccttgaggctgccccttaggcagggaacagggttggtaccacccctcactt 1461
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37482481 gtaccgaatccttgaggctgccccttaggcagggaacagggttggtaccacccctcactt 37482540
Query: 1462 gcatgccgtggtctccccactggctccctggccctgcgaggacagtctgcaggccccaac 1521
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 37482541 gcatgccgtggtctccccactggctccctggccctgtgaggacagtctgcaggccccaac 37482600
Query: 1522 ttcggagccatcctctgccaggtgggtctgcccatcctgtcttcctcatcacactcccct 1581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37482601 ttcggagccatcctctgccaggtgggtctgcccatcctgtcttcctcatcacactcccct 37482660
Query: 1582 gtgctctgtttggaaagccacggatgattaaagaagtcactgcagtttctcaagcagatt 1641
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 37482661 gtgctctgtttggaaagccacgaatgattaaagaagtcactgcagtttctcaagcagatt 37482720
Query: 1642 ggaattaagaactagtgaaaagggatcaaataacctcagactgcactcaagaaatgcagt 1701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37482721 ggaattaagaactagtgaaaagggatcaaataacctcagactgcactcaagaaatgcagt 37482780
Query: 1702 tcttat 1707
||||||
Sbjct: 37482781 tcttat 37482786
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Plus
Query: 278 aggtcctcataaccctgggattaatcttgctcactgcctactttgtgattcaacctttca 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37463609 aggtcctcataaccctgggattaatcttgctcactgcctactttgtgattcaacctttca 37463668
Query: 338 gctcattaccacctgaaccagtgctttctggagctcacacctggcgttcactcatccatc 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37463669 gctcattaccacctgaaccagtgctttctggagctcacacctggcgttcactcatccatc 37463728
Query: 398 acatccggctgatgtctttgcccattaccaagaagtacatgccagaaaataaaggagttc 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37463729 acatccggctgatgtctttgcccattaccaagaagtacatgccagaaaataaaggagttc 37463788
Query: 458 ctttgcatgggggtgatgaagacagaccctttccag 493
||||||||||||||||||||||||||||||||||||
Sbjct: 37463789 ctttgcatgggggtgatgaagacagaccctttccag 37463824
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 72 ggattttgtattaggagacatggatcttgctgctaatgagctcagcatttatgacaaact 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37462945 ggattttgtattaggagacatggatcttgctgctaatgagctcagcatttatgacaaact 37463004
Query: 132 ttcggagactgtggatttagtgagacagacaggccatcagtgtggcatgtcagagaaggc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37463005 ttcggagactgtggatttagtgagacagacaggccatcagtgtggcatgtcagagaaggc 37463064
Query: 192 aattgaaaaatttatcagacagctgctggaaaagaatgaacctcagagggggccaccaca 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37463065 aattgaaaaatttatcagacagctgctggaaaagaatgaacctcagagggggccaccaca 37463124
Query: 252 gtatcccgtccttctagccgtgtacaaggt 281
||||||||||||||||||||||||||||||
Sbjct: 37463125 gtatcccgtccttctagccgtgtacaaggt 37463154
Score = 305 bits (154), Expect = 5e-80
Identities = 157/158 (99%)
Strand = Plus / Plus
Query: 491 cagactttgacccctggtggacaaatgactgtgagcagaatgagtcagaccccatccctg 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37471721 cagactttgacccctggtggacaaatgactgtgagcagaatgagtcagaccccatccctg 37471780
Query: 551 ccaactgcaccggctgcacccagaagttgcccctaaaagtaatgctcctggaagacaccc 610
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 37471781 ccaactgcaccggctgcacccagaagttgcccctgaaagtaatgctcctggaagacaccc 37471840
Query: 611 cagtgaagtttgagagactccatcctctggtgatcaag 648
||||||||||||||||||||||||||||||||||||||
Sbjct: 37471841 cagtgaagtttgagagactccatcctctggtgatcaag 37471878
Score = 287 bits (145), Expect = 1e-74
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 645 caagaccggacagcccctgtcatctgaggagcttcagcagtttttgtgccagtaccctga 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37472000 caagaccggacagcccctgtcatctgaggagcttcagcagtttttgtgccagtaccctga 37472059
Query: 705 ggtgacagaaggcttcaccgaagagtttttcgccaagtggtggcgctgctttcctcaccg 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37472060 ggtgacagaaggcttcaccgaagagtttttcgccaagtggtggcgctgctttcctcaccg 37472119
Query: 765 gtggttcccatttccttatccctgg 789
|||||||||||||||||||||||||
Sbjct: 37472120 gtggttcccatttccttatccctgg 37472144
Score = 260 bits (131), Expect = 3e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 788 ggagaagacctctgaacagatcacacattttacgtgagctttttcctgtcttcaccttcc 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37474243 ggagaagacctctgaacagatcacacattttacgtgagctttttcctgtcttcaccttcc 37474302
Query: 848 tgccgtttccaaaagacgcctccttgaaaaagtgcttccttcttcaaccggaacctattg 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37474303 tgccgtttccaaaagacgcctccttgaaaaagtgcttccttcttcaaccggaacctattg 37474362
Query: 908 cggggagtaag 918
|||||||||||
Sbjct: 37474363 cggggagtaag 37474373
Score = 252 bits (127), Expect = 6e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 917 agatgcataggatgcatgacctgtttaccatcggcagcggcgaggccatgttgcagctca 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37478135 agatgcataggatgcatgacctgtttaccatcggcagcggcgaggccatgttgcagctca 37478194
Query: 977 ttcctcccttccagtgccgaagacactgccaatctgtggcgatgccactggagccggggg 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37478195 ttcctcccttccagtgccgaagacactgccaatctgtggcgatgccactggagccggggg 37478254
Query: 1037 atgttgg 1043
|||||||
Sbjct: 37478255 atgttgg 37478261
Score = 129 bits (65), Expect = 6e-27
Identities = 72/73 (98%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gtcggcttcttc-cgcccggcggcttgctgtctccgaggcgggaggagcccgagggggca 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37451402 gtcggcttcttcacgcccggcggcttgctgtctccgaggcgggaggagcccgagggggca 37451461
Query: 60 cggtccccgcatg 72
|||||||||||||
Sbjct: 37451462 cggtccccgcatg 37451474
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,346,858
Number of extensions: 337
Number of successful extensions: 337
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 9
Length of query: 2010
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1988
Effective length of database: 2,808,408,574
Effective search space: 5583116245112
Effective search space used: 5583116245112
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)