Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002371
(2239 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028934.1| rab GDP dissociation inhibitor beta [Bos tau... 836 0.0
Alignment gi|NP_776489.1| rab GDP dissociation inhibitor alpha [Bos tauru... 750 0.0
Alignment gi|NP_001192318.1| rab proteins geranylgeranyltransferase compo... 84 5e-16
Alignment gi|XP_002694003.1| PREDICTED: choroideremia-like [Bos taurus]. 82 2e-15
Alignment gi|XP_610836.1| PREDICTED: choroideremia [Bos taurus]. 82 2e-15
>ref|NP_001028934.1| rab GDP dissociation inhibitor beta [Bos taurus].
Length = 445
Score = 836 bits (2159), Expect = 0.0
Identities = 418/445 (93%), Positives = 424/445 (95%)
Frame = +2
Query: 227 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 406
MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRF IPG
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 407 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 586
APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP
Sbjct: 61 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 587 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 766
STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEG+DPKKT+MREVYKKFDLGQD
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGIDPKKTSMREVYKKFDLGQD 180
Query: 767 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 946
VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 947 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 1126
LSAIYGGTYMLNKPIEEII+QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
Sbjct: 241 LSAIYGGTYMLNKPIEEIIMQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 1127 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 1306
ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 360
Query: 1307 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDI 1486
EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGT+SQIFISRTYDATTHFETTCDDIKDI
Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKDI 420
Query: 1487 YKRMTGSEFDFEEMKRKKNDIYGED 1561
YKRM GSEFDFEEMKRKKNDIYGE+
Sbjct: 421 YKRMMGSEFDFEEMKRKKNDIYGEE 445
>ref|NP_776489.1| rab GDP dissociation inhibitor alpha [Bos taurus].
Length = 447
Score = 750 bits (1937), Expect = 0.0
Identities = 366/444 (82%), Positives = 401/444 (90%)
Frame = +2
Query: 227 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 406
M+EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGES+SITPLE+LYKRF +
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 407 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 586
PP +MGRGRDWNVDLIPKFLMANGQLVKMLL+TEVTRYLDFKV EGSFVYKGGKIYKVP
Sbjct: 61 GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 587 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 766
STE EALAS+LMG+FEKRRFRKFLV+VANFDENDP+TFEGVDP+ T+MR+VY+KFDLGQD
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180
Query: 767 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 946
VIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 947 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 1126
LSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSYV DRV K GQVIR+
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRI 300
Query: 1127 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 1306
ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAIASTTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 360
Query: 1307 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDI 1486
+PEKE+ PALELLEPI+QKFV+ISDL P D G++SQ+F S +YDATTHFETTC+DIKDI
Sbjct: 361 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDI 420
Query: 1487 YKRMTGSEFDFEEMKRKKNDIYGE 1558
YKRM GS FDFE MKRK+ND++GE
Sbjct: 421 YKRMAGSAFDFENMKRKQNDVFGE 444
>ref|NP_001192318.1| rab proteins geranylgeranyltransferase component A 1 [Bos taurus].
Length = 653
Score = 84.0 bits (206), Expect = 5e-16
Identities = 66/311 (21%), Positives = 134/311 (43%), Gaps = 6/311 (1%)
Frame = +2
Query: 431 GRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALA 610
GR +N+DL+ K L + G L+ +L+ + V+RY +FK ++ G++ +VP + A+
Sbjct: 224 GRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVKQVPCSRADVFN 283
Query: 611 SSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHA 790
S + + EKR KFL + ++E+ P ++ + + E K L ++ F H+
Sbjct: 284 SKQLTMVEKRMLMKFLTFCMEYEEH-PDEYKAYE--EITFSEYLKTQKLTPNLQYFVLHS 340
Query: 791 LALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFARLSAIYGGT 970
+A+ + + K + SL R F R+ A++GG
Sbjct: 341 MAM---TSETGSSTIDGLKATKNFLHSLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGI 397
Query: 971 YMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVKDRV---EKVGQVIRVIC 1132
Y L ++ ++V ++GK + + G+ K + + SY+ + + Q+ R I
Sbjct: 398 YCLRHSVQCLVVDKESGKCKAIIDQYGQRIISKHFLVEDSYLSENTCAHVQYRQISRAIL 457
Query: 1133 ILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEP 1312
I + T I+ + + V + S+ +G Y+ + T +K
Sbjct: 458 ITDRSVLKTDSDQQISILTVPAEEPGTFAVRVIELCSSTMTCMKGSYL-VHLTCTSSKTA 516
Query: 1313 EKEIRPALELL 1345
+++ P ++ L
Sbjct: 517 REDLEPVVQKL 527
Score = 51.2 bits (121), Expect = 4e-06
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +2
Query: 236 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 367
E+DVIV+GTGL E I++ S +G++VLH+D YYGG AS +
Sbjct: 8 EFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS 51
>ref|XP_002694003.1| PREDICTED: choroideremia-like [Bos taurus].
Length = 651
Score = 82.4 bits (202), Expect = 2e-15
Identities = 61/264 (23%), Positives = 121/264 (45%), Gaps = 10/264 (3%)
Frame = +2
Query: 431 GRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALA 610
GR +N+DL K L + G L+ +L+ + V+RY +FK ++ GK+ +VP + A+
Sbjct: 221 GRRFNIDLSSKLLYSQGLLIDLLIKSNVSRYAEFKNVTRILAFREGKVEQVPCSRADVFN 280
Query: 611 SSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHA 790
S + + EKR KFL + +++++ P ++ + + E K +L + F H+
Sbjct: 281 SKELTMVEKRMLMKFLTFCLDYEQH-PEEYQAF--TQCSFSEYLKTKNLTPSLQHFILHS 337
Query: 791 LALYRTDDYLDQPCCETINRI---KLYSESLARXXXXXXXXXXXXXXXXXXXFARLSAIY 961
+A+ + + C T++ + K + + L R F R+ A++
Sbjct: 338 IAM------MSESSCTTVDGLKATKTFLQCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVF 391
Query: 962 GGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVKDRV---EKVGQVIR 1123
GG Y L ++ ++V ++G+ + G+ K I + SY+ + + Q+ R
Sbjct: 392 GGIYCLRHKVQCLVVDRESGRCKAIIDHLGQRINAKYFIVEDSYLSEETCSSVQYKQISR 451
Query: 1124 VICILSHPI-KNTSDANSCQIIIP 1192
+ I + K SD +I+P
Sbjct: 452 AVLITDQSVLKTDSDQQISILIVP 475
Score = 52.4 bits (124), Expect = 2e-06
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +2
Query: 236 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 367
E+DVIV+GTGL E IL+ S +G++VLH+D YYGG AS +
Sbjct: 8 EFDVIVMGTGLPESILAAACSRSGQRVLHLDSRSYYGGNWASFS 51
>ref|XP_610836.1| PREDICTED: choroideremia [Bos taurus].
Length = 651
Score = 82.4 bits (202), Expect = 2e-15
Identities = 61/264 (23%), Positives = 121/264 (45%), Gaps = 10/264 (3%)
Frame = +2
Query: 431 GRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALA 610
GR +N+DL K L + G L+ +L+ + V+RY +FK ++ GK+ +VP + A+
Sbjct: 221 GRRFNIDLSSKLLYSQGLLIDLLIKSNVSRYAEFKNVTRILAFREGKVEQVPCSRADVFN 280
Query: 611 SSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHA 790
S + + EKR KFL + +++++ P ++ + + E K +L + F H+
Sbjct: 281 SKELTMVEKRMLMKFLTFCLDYEQH-PEEYQAF--TQCSFSEYLKTKNLTPSLQHFILHS 337
Query: 791 LALYRTDDYLDQPCCETINRI---KLYSESLARXXXXXXXXXXXXXXXXXXXFARLSAIY 961
+A+ + + C T++ + K + + L R F R+ A++
Sbjct: 338 IAM------MSESSCTTVDGLKATKTFLQCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVF 391
Query: 962 GGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVKDRV---EKVGQVIR 1123
GG Y L ++ ++V ++G+ + G+ K I + SY+ + + Q+ R
Sbjct: 392 GGIYCLRHKVQCLVVDRESGRCKAIIDHLGQRINAKYFIVEDSYLSEETCSSVQYKQISR 451
Query: 1124 VICILSHPI-KNTSDANSCQIIIP 1192
+ I + K SD +I+P
Sbjct: 452 AVLITDQSVLKTDSDQQISILIVP 475
Score = 52.4 bits (124), Expect = 2e-06
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +2
Query: 236 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 367
E+DVIV+GTGL E IL+ S +G++VLH+D YYGG AS +
Sbjct: 8 EFDVIVMGTGLPESILAAACSRSGQRVLHLDSRSYYGGNWASFS 51
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 76,322,017
Number of extensions: 2016818
Number of successful extensions: 7341
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7306
Number of HSP's successfully gapped: 8
Length of query: 746
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 636
Effective length of database: 14,041,694
Effective search space: 8930517384
Effective search space used: 8930517384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002371
(2239 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003184.1| rab GDP dissociation inhibitor beta [Canis l... 827 0.0
Alignment gi|NP_001003185.1| rab GDP dissociation inhibitor alpha [Canis ... 751 0.0
Alignment gi|XP_850923.1| PREDICTED: similar to Rab GDP dissociation inhi... 350 3e-96
Alignment gi|XP_538092.2| PREDICTED: similar to Rab proteins geranylgeran... 77 9e-14
Alignment gi|XP_863080.1| PREDICTED: similar to Rab proteins geranylgeran... 75 2e-13
Alignment gi|XP_863055.1| PREDICTED: similar to Rab proteins geranylgeran... 75 2e-13
Alignment gi|XP_537217.1| PREDICTED: similar to Rab proteins geranylgeran... 75 2e-13
>ref|NP_001003184.1| rab GDP dissociation inhibitor beta [Canis lupus familiaris].
Length = 445
Score = 827 bits (2135), Expect = 0.0
Identities = 412/445 (92%), Positives = 421/445 (94%)
Frame = +2
Query: 227 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 406
MNEEYDVIVLGTGLTECILSGIM+VNGKKVLHMDRNPYYGGESASITPLEDLYKRF IPG
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMTVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 407 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 586
APPASMGRGRDWN+DLIPKFLMANGQLVKMLL+TEVTRYLDFKVTEGSFVYKGGKIYKVP
Sbjct: 61 APPASMGRGRDWNLDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 587 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 766
STEAEALASSLMGLFEKRRFRKFLVYVANFDE DPRTFEG+DPKKTA+ EVYKKFDLGQD
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTAIGEVYKKFDLGQD 180
Query: 767 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 946
VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 947 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 1126
LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGE+ARCKQLICDPSYVKDRVEKVGQVIRV
Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEVARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 1127 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 1306
ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAI STT ETK
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIVSTTAETK 360
Query: 1307 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDI 1486
EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGT+SQIFISRTYDATTHFETTCDDIK+I
Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 420
Query: 1487 YKRMTGSEFDFEEMKRKKNDIYGED 1561
YKRMTGSEFDFEEMKRKKNDIYGED
Sbjct: 421 YKRMTGSEFDFEEMKRKKNDIYGED 445
>ref|NP_001003185.1| rab GDP dissociation inhibitor alpha [Canis lupus familiaris].
Length = 447
Score = 751 bits (1938), Expect = 0.0
Identities = 365/444 (82%), Positives = 401/444 (90%)
Frame = +2
Query: 227 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 406
M+EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGES+SITPLE+LYKRF +
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 407 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 586
PP +MGRGRDWNVDLIPKFLMANGQLVKMLL+TEVTRYLDFKV EGSF+YKGGKIYKVP
Sbjct: 61 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVP 120
Query: 587 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 766
STE EALAS+LMG+FEKRRFRKFLV+VANFDENDP+TFEGVDP+ T+MR+VY+KFDLGQD
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180
Query: 767 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 946
VIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 947 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 1126
LSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSY+ DRV K GQVIR+
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300
Query: 1127 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 1306
ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAIASTTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 360
Query: 1307 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDI 1486
EPEKE+ PALELLEPI+QKFV+ISDL P D G++SQ+F S +YDATTHFETTC+DIKDI
Sbjct: 361 EPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDI 420
Query: 1487 YKRMTGSEFDFEEMKRKKNDIYGE 1558
YKRM GS FDFE MKRK+ND++GE
Sbjct: 421 YKRMAGSAFDFENMKRKQNDVFGE 444
>ref|XP_850923.1| PREDICTED: similar to Rab GDP dissociation inhibitor beta (Rab GDI
beta) (GDI-2) [Canis familiaris].
Length = 287
Score = 350 bits (899), Expect = 3e-96
Identities = 171/183 (93%), Positives = 180/183 (98%)
Frame = +2
Query: 1013 GKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIP 1192
G VIGVKSEGE+ARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIP
Sbjct: 105 GPVIGVKSEGEVARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIP 164
Query: 1193 QNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVS 1372
QNQVNRKSD+YVCMISSAHNVAAQGKYIA+ STTVETK+PEKEIRPALELLEPIE+KFVS
Sbjct: 165 QNQVNRKSDVYVCMISSAHNVAAQGKYIAVVSTTVETKDPEKEIRPALELLEPIERKFVS 224
Query: 1373 ISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRKKNDIY 1552
ISD+LVPKDLGT+SQIFISRTY ATTHFETTCDDIK+IYKRMTGSEFDFEEMKR+KNDIY
Sbjct: 225 ISDVLVPKDLGTESQIFISRTYHATTHFETTCDDIKNIYKRMTGSEFDFEEMKRRKNDIY 284
Query: 1553 GED 1561
GED
Sbjct: 285 GED 287
>ref|XP_538092.2| PREDICTED: similar to Rab proteins geranylgeranyltransferase
component A 1 (Rab escort protein 1) (REP-1)
(Choroideraemia protein) (TCD protein) [Canis
familiaris].
Length = 652
Score = 76.6 bits (187), Expect = 9e-14
Identities = 66/315 (20%), Positives = 131/315 (41%), Gaps = 10/315 (3%)
Frame = +2
Query: 431 GRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALA 610
GR +N+DL+ K L + G L+ +L+ + V+RY +FK ++ G++ +VP + A+
Sbjct: 223 GRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFN 282
Query: 611 SSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHA 790
S + + EKR KFL + + E P ++ + + E K L ++ F H+
Sbjct: 283 SKQLTMVEKRMLMKFLTFCMEY-EKHPDEYKAYE--EITFSEYLKTQKLTPNLQYFVLHS 339
Query: 791 LALYRTDDYLDQPCCETINRIKL---YSESLARXXXXXXXXXXXXXXXXXXXFARLSAIY 961
+A+ + TI+ +K + L R F R+ A++
Sbjct: 340 IAM------TSETASNTIDGLKATKNFLHCLGRYGNTPFLFPLYGQGELPQCFCRMCAVF 393
Query: 962 GGTYMLNKPIEEIIV----QNGKVIGVKSEGEIARCKQLICDPSYVKDRV---EKVGQVI 1120
GG Y L ++ ++V + K I + G+ K + + SY + + Q+
Sbjct: 394 GGIYCLRHSVQCLVVDKESRKCKAI-IDQFGQRIISKHFLVEDSYFSENTCSHVQYRQIS 452
Query: 1121 RVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVE 1300
R + I + T I+ + + V + S+ +G Y+ + T
Sbjct: 453 RSVLITDRSVLKTDSDQQISILTVPGEEPGTFAVRVIELCSSTMTCMKGTYL-VHLTCTS 511
Query: 1301 TKEPEKEIRPALELL 1345
+K +++ P ++ L
Sbjct: 512 SKTAREDLEPVVQKL 526
Score = 51.2 bits (121), Expect = 4e-06
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +2
Query: 236 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 367
E+DVIV+GTGL E I++ S +G++VLH+D YYGG AS +
Sbjct: 8 EFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS 51
>ref|XP_863080.1| PREDICTED: similar to Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) (REP-2)
(Choroideraemia-like protein) isoform 4 [Canis
familiaris].
Length = 639
Score = 75.5 bits (184), Expect = 2e-13
Identities = 62/265 (23%), Positives = 118/265 (44%), Gaps = 11/265 (4%)
Frame = +2
Query: 431 GRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALA 610
GR +N+DL+ K L + G L+ +L+ + V+RY +FK ++ GK+ +VP + A+
Sbjct: 209 GRRFNIDLVSKLLYSQGLLIDLLIKSNVSRYAEFKNVTRILAFREGKVEQVPCSRADVFN 268
Query: 611 SSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHA 790
S + + EKR KFL + +++++ P ++ + + K L ++ F H+
Sbjct: 269 SKELTMVEKRILMKFLTFCLDYEQH-PDQYQAF--VHCSFSDYLKTKKLTPNLQHFVLHS 325
Query: 791 LALYRTDDYLDQPCCETINRIKL---YSESLARXXXXXXXXXXXXXXXXXXXFARLSAIY 961
+A + + C TI+ +K + L R F R+ A++
Sbjct: 326 IA-------MTESSCTTIDGLKATKNFLRCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVF 378
Query: 962 GGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVKDRV---EKVGQVIR 1123
GG Y L ++ +IV ++G+ + + K I + SY+ + + Q+ R
Sbjct: 379 GGIYCLRHKVQCLIVDKESGRCKAIIDHLDQRINAKYFIVEDSYLSEETCSNVQYKQISR 438
Query: 1124 VICILSHPI--KNTSDANSCQIIIP 1192
+ I I K SD +I+P
Sbjct: 439 AVLITDQSILKKADSDQQISILIVP 463
Score = 51.6 bits (122), Expect = 3e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +2
Query: 236 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 367
E+DV+++GTGL E IL+ S +G++VLH+D YYGG AS +
Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHLDSRSYYGGNWASFS 51
>ref|XP_863055.1| PREDICTED: similar to Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) (REP-2)
(Choroideraemia-like protein) isoform 3 [Canis
familiaris].
Length = 619
Score = 75.5 bits (184), Expect = 2e-13
Identities = 62/265 (23%), Positives = 118/265 (44%), Gaps = 11/265 (4%)
Frame = +2
Query: 431 GRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALA 610
GR +N+DL+ K L + G L+ +L+ + V+RY +FK ++ GK+ +VP + A+
Sbjct: 189 GRRFNIDLVSKLLYSQGLLIDLLIKSNVSRYAEFKNVTRILAFREGKVEQVPCSRADVFN 248
Query: 611 SSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHA 790
S + + EKR KFL + +++++ P ++ + + K L ++ F H+
Sbjct: 249 SKELTMVEKRILMKFLTFCLDYEQH-PDQYQAF--VHCSFSDYLKTKKLTPNLQHFVLHS 305
Query: 791 LALYRTDDYLDQPCCETINRIKL---YSESLARXXXXXXXXXXXXXXXXXXXFARLSAIY 961
+A + + C TI+ +K + L R F R+ A++
Sbjct: 306 IA-------MTESSCTTIDGLKATKNFLRCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVF 358
Query: 962 GGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVKDRV---EKVGQVIR 1123
GG Y L ++ +IV ++G+ + + K I + SY+ + + Q+ R
Sbjct: 359 GGIYCLRHKVQCLIVDKESGRCKAIIDHLDQRINAKYFIVEDSYLSEETCSNVQYKQISR 418
Query: 1124 VICILSHPI--KNTSDANSCQIIIP 1192
+ I I K SD +I+P
Sbjct: 419 AVLITDQSILKKADSDQQISILIVP 443
Score = 51.6 bits (122), Expect = 3e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +2
Query: 236 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 367
E+DV+++GTGL E IL+ S +G++VLH+D YYGG AS +
Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHLDSRSYYGGNWASFS 51
>ref|XP_537217.1| PREDICTED: similar to Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) (REP-2)
(Choroideraemia-like protein) isoform 1 [Canis
familiaris].
Length = 651
Score = 75.5 bits (184), Expect = 2e-13
Identities = 62/265 (23%), Positives = 118/265 (44%), Gaps = 11/265 (4%)
Frame = +2
Query: 431 GRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALA 610
GR +N+DL+ K L + G L+ +L+ + V+RY +FK ++ GK+ +VP + A+
Sbjct: 221 GRRFNIDLVSKLLYSQGLLIDLLIKSNVSRYAEFKNVTRILAFREGKVEQVPCSRADVFN 280
Query: 611 SSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHA 790
S + + EKR KFL + +++++ P ++ + + K L ++ F H+
Sbjct: 281 SKELTMVEKRILMKFLTFCLDYEQH-PDQYQAF--VHCSFSDYLKTKKLTPNLQHFVLHS 337
Query: 791 LALYRTDDYLDQPCCETINRIKL---YSESLARXXXXXXXXXXXXXXXXXXXFARLSAIY 961
+A + + C TI+ +K + L R F R+ A++
Sbjct: 338 IA-------MTESSCTTIDGLKATKNFLRCLGRFGNTPFLFPLYGQGEIPQCFCRMCAVF 390
Query: 962 GGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVKDRV---EKVGQVIR 1123
GG Y L ++ +IV ++G+ + + K I + SY+ + + Q+ R
Sbjct: 391 GGIYCLRHKVQCLIVDKESGRCKAIIDHLDQRINAKYFIVEDSYLSEETCSNVQYKQISR 450
Query: 1124 VICILSHPI--KNTSDANSCQIIIP 1192
+ I I K SD +I+P
Sbjct: 451 AVLITDQSILKKADSDQQISILIVP 475
Score = 51.6 bits (122), Expect = 3e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +2
Query: 236 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 367
E+DV+++GTGL E IL+ S +G++VLH+D YYGG AS +
Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHLDSRSYYGGNWASFS 51
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 79,909,352
Number of extensions: 2095842
Number of successful extensions: 7913
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7878
Number of HSP's successfully gapped: 11
Length of query: 746
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 636
Effective length of database: 15,207,544
Effective search space: 9671997984
Effective search space used: 9671997984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002371
(2239 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001485.2| rab GDP dissociation inhibitor beta isoform 1 [... 823 0.0
Alignment gi|NP_001484.1| rab GDP dissociation inhibitor alpha [Homo sapi... 748 0.0
Alignment gi|NP_001108628.1| rab GDP dissociation inhibitor beta isoform ... 717 0.0
Alignment gi|NP_001812.2| rab proteins geranylgeranyltransferase componen... 84 4e-16
Alignment gi|NP_000381.1| rab proteins geranylgeranyltransferase componen... 72 3e-12
Alignment gi|NP_001138886.1| rab proteins geranylgeranyltransferase compo... 52 3e-06
>ref|NP_001485.2| rab GDP dissociation inhibitor beta isoform 1 [Homo sapiens].
Length = 445
Score = 823 bits (2125), Expect = 0.0
Identities = 412/445 (92%), Positives = 419/445 (94%)
Frame = +2
Query: 227 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 406
MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRF IPG
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 407 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 586
+PP SMGRGRDWNVDLIPKFLMANGQLVKMLL+TEVTRYLDFKVTEGSFVYKGGKIYKVP
Sbjct: 61 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 587 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 766
STEAEALASSLMGLFEKRRFRKFLVYVANFDE DPRTFEG+DPKKT MR+VYKKFDLGQD
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180
Query: 767 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 946
VIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 947 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 1126
LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 1127 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 1306
ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAI STTVETK
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 360
Query: 1307 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDI 1486
EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGT+SQIFISRTYDATTHFETTCDDIK+I
Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 420
Query: 1487 YKRMTGSEFDFEEMKRKKNDIYGED 1561
YKRMTGSEFDFEEMKRKKNDIYGED
Sbjct: 421 YKRMTGSEFDFEEMKRKKNDIYGED 445
>ref|NP_001484.1| rab GDP dissociation inhibitor alpha [Homo sapiens].
Length = 447
Score = 748 bits (1932), Expect = 0.0
Identities = 364/444 (81%), Positives = 400/444 (90%)
Frame = +2
Query: 227 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 406
M+EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGES+SITPLE+LYKRF +
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 407 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 586
PP SMGRGRDWNVDLIPKFLMANGQLVKMLL+TEVTRYLDFKV EGSFVYKGGKIYKVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 587 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 766
STE EALAS+LMG+FEKRRFRKFLV+VANFDENDP+TFEGVDP+ T+MR+VY+KFDLGQD
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 767 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 946
VIDFTGHALALYRTDDYLDQPC ET+NRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 947 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 1126
LSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSY+ DRV K GQVIR+
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300
Query: 1127 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 1306
ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAIASTTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 360
Query: 1307 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDI 1486
+PEKE+ PALELLEPI+QKFV+ISDL P D G +SQ+F S +YDATTHFETTC+DIKDI
Sbjct: 361 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI 420
Query: 1487 YKRMTGSEFDFEEMKRKKNDIYGE 1558
YKRM G+ FDFE MKRK+ND++GE
Sbjct: 421 YKRMAGTAFDFENMKRKQNDVFGE 444
>ref|NP_001108628.1| rab GDP dissociation inhibitor beta isoform 2 [Homo sapiens].
Length = 400
Score = 717 bits (1850), Expect = 0.0
Identities = 368/445 (82%), Positives = 374/445 (84%)
Frame = +2
Query: 227 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 406
MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRF IPG
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 407 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 586
+PP SMGRGRDWNVDLIPKFLMANG
Sbjct: 61 SPPESMGRGRDWNVDLIPKFLMANG----------------------------------- 85
Query: 587 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 766
LMGLFEKRRFRKFLVYVANFDE DPRTFEG+DPKKT MR+VYKKFDLGQD
Sbjct: 86 ----------LMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 135
Query: 767 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 946
VIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR FAR
Sbjct: 136 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 195
Query: 947 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 1126
LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
Sbjct: 196 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 255
Query: 1127 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 1306
ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAI STTVETK
Sbjct: 256 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 315
Query: 1307 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDI 1486
EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGT+SQIFISRTYDATTHFETTCDDIK+I
Sbjct: 316 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 375
Query: 1487 YKRMTGSEFDFEEMKRKKNDIYGED 1561
YKRMTGSEFDFEEMKRKKNDIYGED
Sbjct: 376 YKRMTGSEFDFEEMKRKKNDIYGED 400
>ref|NP_001812.2| rab proteins geranylgeranyltransferase component A 2 [Homo sapiens].
Length = 656
Score = 84.3 bits (207), Expect = 4e-16
Identities = 63/264 (23%), Positives = 121/264 (45%), Gaps = 10/264 (3%)
Frame = +2
Query: 431 GRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALA 610
GR +N+DL+ K L + G L+ +L+ ++V+RY++FK ++ GK+ +VP + A+
Sbjct: 226 GRRFNIDLVSKLLYSQGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFN 285
Query: 611 SSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHA 790
S + + EKR KFL + ++++ P ++ ++ + E K L ++ F H+
Sbjct: 286 SKELTMVEKRMLMKFLTFCLEYEQH-PDEYQAF--RQCSFSEYLKTKKLTPNLQHFVLHS 342
Query: 791 LALYRTDDYLDQPCCETI---NRIKLYSESLARXXXXXXXXXXXXXXXXXXXFARLSAIY 961
+A+ + C TI N K + + L R F R+ A++
Sbjct: 343 IAM------TSESSCTTIDGLNATKNFLQCLGRFGNTPFLFPLYGQGEIPQGFCRMCAVF 396
Query: 962 GGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVKDRV---EKVGQVIR 1123
GG Y L ++ +V ++G+ + G+ K I + SY+ + + Q+ R
Sbjct: 397 GGIYCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSYLSEETCSNVQYKQISR 456
Query: 1124 VICILSHPIKNTS-DANSCQIIIP 1192
+ I I T D + +I+P
Sbjct: 457 AVLITDQSILKTDLDQQTSILIVP 480
Score = 51.2 bits (121), Expect = 4e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +2
Query: 236 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 367
E+DV+++GTGL E IL+ S +G++VLH+D YYGG AS +
Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFS 51
>ref|NP_000381.1| rab proteins geranylgeranyltransferase component A 1 isoform a [Homo
sapiens].
Length = 653
Score = 71.6 bits (174), Expect = 3e-12
Identities = 70/334 (20%), Positives = 138/334 (41%), Gaps = 11/334 (3%)
Frame = +2
Query: 431 GRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALA 610
GR +N+DL+ K L + G L+ +L+ + V+RY +FK ++ G++ +VP + A+
Sbjct: 224 GRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFN 283
Query: 611 SSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHA 790
S + + EKR KFL + + E P ++G + + E K L ++ H+
Sbjct: 284 SKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEYLKTQKLTPNLQYIVMHS 340
Query: 791 LALYRTDDYLDQPCCETINRIKL---YSESLARXXXXXXXXXXXXXXXXXXXFARLSAIY 961
+A+ + TI+ +K + L R F R+ A++
Sbjct: 341 IAM------TSETASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQGELPQCFCRMCAVF 394
Query: 962 GGTYMLNKPIEEIIV----QNGKVIGVKSEGEIARCKQLICDPSYVKDRV---EKVGQVI 1120
GG Y L ++ ++V + K I + G+ + + + SY + + + Q+
Sbjct: 395 GGIYCLRHSVQCLVVDKESRKCKAI-IDQFGQRIISEHFLVEDSYFPENMCSRVQYRQIS 453
Query: 1121 RVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVE 1300
R + I + T I+ + + V + S+ +G Y+ + T
Sbjct: 454 RAVLITDRSVLKTDSDQQISILTVPAEEPGTFAVRVIELCSSTMTCMKGTYLVHLTCT-- 511
Query: 1301 TKEPEKEIRPALELLEPIEQK-FVSISDLLVPKD 1399
+ A E LE + QK FV +++ + +
Sbjct: 512 ------SSKTAREDLESVVQKLFVPYTEMEIENE 539
Score = 51.6 bits (122), Expect = 3e-06
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +2
Query: 236 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 367
E+DVIV+GTGL E I++ S +G++VLH+D YYGG AS +
Sbjct: 8 EFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFS 51
>ref|NP_001138886.1| rab proteins geranylgeranyltransferase component A 1 isoform b
[Homo sapiens].
Length = 110
Score = 51.6 bits (122), Expect = 3e-06
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +2
Query: 236 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 367
E+DVIV+GTGL E I++ S +G++VLH+D YYGG AS +
Sbjct: 8 EFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFS 51
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 78,060,475
Number of extensions: 2037055
Number of successful extensions: 7236
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7195
Number of HSP's successfully gapped: 9
Length of query: 746
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 636
Effective length of database: 14,671,124
Effective search space: 9330834864
Effective search space used: 9330834864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002371
(2239 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032138.3| rab GDP dissociation inhibitor beta [Mus muscul... 823 0.0
Alignment gi|NP_034403.1| rab GDP dissociation inhibitor alpha [Mus muscu... 754 0.0
Alignment gi|NP_067325.2| rab proteins geranylgeranyltransferase componen... 82 2e-15
Alignment gi|NP_061288.2| rab proteins geranylgeranyltransferase componen... 76 1e-13
>ref|NP_032138.3| rab GDP dissociation inhibitor beta [Mus musculus].
Length = 445
Score = 823 bits (2126), Expect = 0.0
Identities = 410/445 (92%), Positives = 418/445 (93%)
Frame = +2
Query: 227 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 406
MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMD+NPYYGGESASITPLEDLYKRF +PG
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPG 60
Query: 407 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 586
PPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRY+DFKV EGSFVYKGGKIYKVP
Sbjct: 61 QPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVP 120
Query: 587 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 766
STEAEALASSLMGLFEKRRFRKFLVYVANFDE DPRTFEGVDPKKT+MR+VYKKFDLGQD
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQD 180
Query: 767 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 946
VIDFTGH+LALYRTDDYLDQPCCETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 947 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 1126
LSAIYGGTYMLNKPIEEIIVQNGKV+GVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 1127 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 1306
ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAI STTVETK
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 360
Query: 1307 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDI 1486
EPEKEIRPALELLEPIEQKFVSISDL VPKDLGTDSQIFISR YDATTHFETTCDDIKDI
Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDI 420
Query: 1487 YKRMTGSEFDFEEMKRKKNDIYGED 1561
YKRMTGSEFDFEEMKRKKNDIYGED
Sbjct: 421 YKRMTGSEFDFEEMKRKKNDIYGED 445
>ref|NP_034403.1| rab GDP dissociation inhibitor alpha [Mus musculus].
Length = 447
Score = 754 bits (1946), Expect = 0.0
Identities = 368/444 (82%), Positives = 402/444 (90%)
Frame = +2
Query: 227 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 406
M+EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGES+SITPLE+LYKRF I
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILE 60
Query: 407 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 586
PP SMGRGRDWNVDLIPKFLMANGQLVKMLL+TEVTRYLDFKV EGSFVYKGGKIYKVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 587 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 766
STE EALAS+LMG+FEKRRFRKFLV+VANFDENDP+TFEGVDP+ T+MR+VY+KFDLGQD
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180
Query: 767 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 946
VIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 947 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 1126
LSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSY+ DRV+K GQVIR+
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVIRI 300
Query: 1127 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 1306
ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAIASTTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 360
Query: 1307 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDI 1486
EPEKE+ PALELLEPI+QKFV+ISDL P D G++SQ+F S +YDATTHFETTC+DIKDI
Sbjct: 361 EPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDI 420
Query: 1487 YKRMTGSEFDFEEMKRKKNDIYGE 1558
YKRM GS FDFE MKRK+ND++GE
Sbjct: 421 YKRMAGSAFDFENMKRKQNDVFGE 444
>ref|NP_067325.2| rab proteins geranylgeranyltransferase component A 2 [Mus musculus].
Length = 621
Score = 81.6 bits (200), Expect = 2e-15
Identities = 68/313 (21%), Positives = 137/313 (43%), Gaps = 9/313 (2%)
Frame = +2
Query: 434 RDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALAS 613
R +N+DL+ K L + G L+ +L+ + V+RY +FK + GK+ +VP + A+ S
Sbjct: 226 RRFNIDLVSKPLYSQGSLIDLLIKSNVSRYAEFKNVTRILAFWEGKVEQVPCSRADVFNS 285
Query: 614 SLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHAL 793
+ + EKR KFL + +++++ E D K+ + + K L ++ F H++
Sbjct: 286 KELSMVEKRMLMKFLTFCLDYEQHSD---EYQDFKQCSFSDYLKTKKLTPNLQHFILHSI 342
Query: 794 ALYRTDDYLDQPCCETINRI---KLYSESLARXXXXXXXXXXXXXXXXXXXFARLSAIYG 964
A+ + C T++ + K + + L R F R+ A++G
Sbjct: 343 AM------TSESSCTTLDGLQATKTFLQCLGRFGNTPFIFPLYGHGEIPQCFCRMCAVFG 396
Query: 965 GTYMLNKPIEEIIV--QNGKVIG-VKSEGEIARCKQLICDPSYV-KDRVEKV--GQVIRV 1126
G Y L ++ ++V +G+ G + + G+ I + SY+ K+ V Q+ R
Sbjct: 397 GVYCLRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSYLPKETCSNVQYKQISRA 456
Query: 1127 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 1306
+ I I T I++ + + V + S+ + Y+ + T +K
Sbjct: 457 VLITDQSILKTDSDQQISILVVPPLEPGTTSVRVMELCSSTMTCMKDSYL-VHLTCSSSK 515
Query: 1307 EPEKEIRPALELL 1345
+++ P ++ L
Sbjct: 516 TAREDLEPVVKQL 528
Score = 51.2 bits (121), Expect = 3e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +2
Query: 236 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 367
E+DV+++GTGL E IL+ S +G++VLH+D YYGG AS +
Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHVDSRSYYGGNWASFS 51
>ref|NP_061288.2| rab proteins geranylgeranyltransferase component A 1 [Mus musculus].
Length = 662
Score = 75.9 bits (185), Expect = 1e-13
Identities = 64/312 (20%), Positives = 131/312 (41%), Gaps = 7/312 (2%)
Frame = +2
Query: 431 GRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALA 610
GR +N+DL+ K L + G L+ +L+ + V+RY +FK ++ G + +VP + A+
Sbjct: 233 GRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFN 292
Query: 611 SSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHA 790
S + + EKR KFL + + E+ P ++ + +T E K L ++ F H+
Sbjct: 293 SKQLTMVEKRMLMKFLTFCVEY-EDHPDEYKAYE--ETTFSEYLKTQKLTPNLQYFVLHS 349
Query: 791 LALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFARLSAIYGGT 970
+A+ + + K + + L R F R+ A++GG
Sbjct: 350 IAM---TSETTSSTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGI 406
Query: 971 YMLNKPIEEIIV----QNGKVIGVKSEGEIARCKQLICDPSYVKDRV---EKVGQVIRVI 1129
Y L ++ ++V + K I V G+ K + + SY+ + + Q+ R +
Sbjct: 407 YCLRHSVQCLVVDKESRKCKAI-VDQFGQRIISKHFVIEDSYLSENTCSGVQYRQISRAV 465
Query: 1130 CILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKE 1309
I + I+ + + + V + S+ +G Y+ + T + +K
Sbjct: 466 LITDGSVLKPDSDQQVSILTVPAEESGSFAVRVIELCSSTMTCMKGTYL-VHLTCMSSKT 524
Query: 1310 PEKEIRPALELL 1345
+++ ++ L
Sbjct: 525 AREDLERVVQKL 536
Score = 50.1 bits (118), Expect = 7e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +2
Query: 236 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 367
++DVIV+GTGL E I++ S +G++VLH+D YYGG AS +
Sbjct: 8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS 51
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 65,937,945
Number of extensions: 1690081
Number of successful extensions: 5908
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5883
Number of HSP's successfully gapped: 6
Length of query: 746
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 637
Effective length of database: 12,343,635
Effective search space: 7862895495
Effective search space used: 7862895495
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002371
(2239 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001643.1| rab GDP dissociation inhibitor beta [Sus scr... 843 0.0
Alignment gi|XP_003360570.1| PREDICTED: rab GDP dissociation inhibitor al... 752 0.0
Alignment gi|XP_003360571.1| PREDICTED: rab GDP dissociation inhibitor al... 646 0.0
Alignment gi|XP_003135267.2| PREDICTED: rab proteins geranylgeranyltransf... 81 2e-15
Alignment gi|XP_003357684.1| PREDICTED: rab proteins geranylgeranyltransf... 77 5e-14
>ref|NP_001001643.1| rab GDP dissociation inhibitor beta [Sus scrofa].
Length = 445
Score = 843 bits (2178), Expect = 0.0
Identities = 424/445 (95%), Positives = 425/445 (95%)
Frame = +2
Query: 227 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 406
MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 60
Query: 407 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 586
APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP
Sbjct: 61 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 587 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 766
STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 180
Query: 767 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 946
VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 947 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 1126
LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 1127 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 1306
ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK
Sbjct: 301 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 360
Query: 1307 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDI 1486
EPEKEIRPALELL+PIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC DIKDI
Sbjct: 361 EPEKEIRPALELLKPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCGDIKDI 420
Query: 1487 YKRMTGSEFDFEEMKRKKNDIYGED 1561
YKRMTGSEFDFEEMKRKKNDIYGED
Sbjct: 421 YKRMTGSEFDFEEMKRKKNDIYGED 445
>ref|XP_003360570.1| PREDICTED: rab GDP dissociation inhibitor alpha-like isoform 1 [Sus
scrofa].
Length = 447
Score = 752 bits (1941), Expect = 0.0
Identities = 367/444 (82%), Positives = 401/444 (90%)
Frame = +2
Query: 227 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 406
M+EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGES+SITPLE+LYKRF +
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 407 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 586
PP +MGRGRDWNVDLIPKFLMANGQLVKMLL+TEVTRYLDFKV EGSFVYKGGKIYKVP
Sbjct: 61 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 587 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 766
STE EALAS+LMG+FEKRRFRKFLV+VANFDENDP+TFEGVDP+ T+MR+VY+KFDLGQD
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180
Query: 767 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 946
VIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 947 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 1126
LSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSYV DRV K GQVIR+
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRI 300
Query: 1127 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 1306
ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAIASTTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 360
Query: 1307 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDI 1486
EPEKE+ PALELLEPI+QKFV+ISDL P D G++SQ+F S +YDATTHFETTC+DIKDI
Sbjct: 361 EPEKEVEPALELLEPIDQKFVAISDLYEPVDDGSESQVFCSCSYDATTHFETTCNDIKDI 420
Query: 1487 YKRMTGSEFDFEEMKRKKNDIYGE 1558
YKRM GS FDFE MKRK+ND++GE
Sbjct: 421 YKRMVGSAFDFENMKRKQNDVFGE 444
>ref|XP_003360571.1| PREDICTED: rab GDP dissociation inhibitor alpha-like isoform 2 [Sus
scrofa].
Length = 402
Score = 646 bits (1667), Expect = 0.0
Identities = 324/444 (72%), Positives = 357/444 (80%)
Frame = +2
Query: 227 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 406
M+EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGES+SITPLE+LYKRF +
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 407 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 586
PP +MGRGRDWNVDLIPKFLM
Sbjct: 61 GPPEAMGRGRDWNVDLIPKFLM-------------------------------------- 82
Query: 587 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 766
A+ LMG+FEKRRFRKFLV+VANFDENDP+TFEGVDP+ T+MR+VY+KFDLGQD
Sbjct: 83 -------ANDLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 135
Query: 767 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXXXXXFAR 946
VIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR FAR
Sbjct: 136 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 195
Query: 947 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 1126
LSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSYV DRV K GQVIR+
Sbjct: 196 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRI 255
Query: 1127 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 1306
ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAIASTTVET
Sbjct: 256 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 315
Query: 1307 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDI 1486
EPEKE+ PALELLEPI+QKFV+ISDL P D G++SQ+F S +YDATTHFETTC+DIKDI
Sbjct: 316 EPEKEVEPALELLEPIDQKFVAISDLYEPVDDGSESQVFCSCSYDATTHFETTCNDIKDI 375
Query: 1487 YKRMTGSEFDFEEMKRKKNDIYGE 1558
YKRM GS FDFE MKRK+ND++GE
Sbjct: 376 YKRMVGSAFDFENMKRKQNDVFGE 399
>ref|XP_003135267.2| PREDICTED: rab proteins geranylgeranyltransferase component A 1 [Sus
scrofa].
Length = 653
Score = 81.3 bits (199), Expect = 2e-15
Identities = 68/315 (21%), Positives = 141/315 (44%), Gaps = 10/315 (3%)
Frame = +2
Query: 431 GRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALA 610
GR +N+DL+ K L + G L+ +L+ + V+RY +FK ++ G++ +VP + A+
Sbjct: 224 GRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFN 283
Query: 611 SSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHA 790
S + + EKR KFL + +++E P ++ + + + E K L ++ F H+
Sbjct: 284 SKQLTMVEKRMLMKFLTFCMDYEEY-PDEYKAYE--EISFSEYLKTQKLTPNLQYFVLHS 340
Query: 791 LALYRTDDYLDQPCCETINRIKL---YSESLARXXXXXXXXXXXXXXXXXXXFARLSAIY 961
+A+ + TI+ +K + L R F R+ A++
Sbjct: 341 IAM------TSETASSTIDGLKATQNFLHCLGRYGNTPFLFPLYGQGELPQCFCRMCAVF 394
Query: 962 GGTYMLNKPIEEIIV--QNGKVIGVKSE-GEIARCKQLICDPSYVKDRV---EKVGQVIR 1123
GG Y L ++ ++V ++GK + G+ K I + SY + + Q+ R
Sbjct: 395 GGIYCLRHSVQCLVVDKESGKCKAIIDHFGQRIIAKHFIVEDSYFSENTCSRVQYRQISR 454
Query: 1124 VICILSHPI-KNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVE 1300
+ + + K+ SD + +P ++ + + V + S+ +G Y+ + T
Sbjct: 455 AVLVTDKSVLKSNSDQQISILTVPADEPGAFA-VRVIELCSSTMTCMKGTYL-VHLTCTS 512
Query: 1301 TKEPEKEIRPALELL 1345
+K +++ P ++ L
Sbjct: 513 SKTAREDLEPVVQKL 527
Score = 51.2 bits (121), Expect = 2e-06
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +2
Query: 236 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASIT 367
E+DVIV+GTGL E I++ S +G++VLH+D YYGG AS +
Sbjct: 8 EFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS 51
>ref|XP_003357684.1| PREDICTED: rab proteins geranylgeranyltransferase component A 2 [Sus
scrofa].
Length = 653
Score = 76.6 bits (187), Expect = 5e-14
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 3/215 (1%)
Frame = +2
Query: 434 RDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALAS 613
R +N+DL+ K L + G L+ +L+ + V+RY +FK ++ GK+ +VP + A+ S
Sbjct: 224 RRFNIDLVSKLLYSQGLLIDLLIKSNVSRYAEFKNVTRILAFREGKVEQVPCSRADVFNS 283
Query: 614 SLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHAL 793
+ + EKR KFL + ++ E P ++ D + + E K L + F H++
Sbjct: 284 KALTMVEKRMLMKFLTFCLDY-ERHPDEYQ--DFMQCSFSEYLKAKKLTPSLQHFVLHSI 340
Query: 794 ALYRTDDYLDQPCCETINRIKL---YSESLARXXXXXXXXXXXXXXXXXXXFARLSAIYG 964
A+ + C TI+ +K + + L R F R+ A++G
Sbjct: 341 AM------TSESSCTTIDGLKATKNFLQCLGRFGNTPFLFPLYGQGEVPQCFCRMCAVFG 394
Query: 965 GTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLI 1069
G Y L ++ ++V + E RCK +I
Sbjct: 395 GIYCLRHKVQCLVV----------DKESGRCKAII 419
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,274,636
Number of extensions: 1302350
Number of successful extensions: 5093
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5060
Number of HSP's successfully gapped: 7
Length of query: 746
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 640
Effective length of database: 8,704,850
Effective search space: 5571104000
Effective search space used: 5571104000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002371
(2239 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 1526 0.0
Sscrofa_Chr01 190 2e-45
Sscrofa_ChrX 170 2e-39
>Sscrofa_Chr10
|| Length = 79102373
Score = 1526 bits (770), Expect = 0.0
Identities = 820/830 (98%), Gaps = 5/830 (0%)
Strand = Plus / Plus
Query: 1414 ccagatcttcatatcccgcacgtacgacgccaccactcacttcgagaccacctgtgacga 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311234 ccagatcttcatatcccgcacgtacgacgccaccactcacttcgagaccacctgtgacga 71311293
Query: 1474 catcaaggacatctataagaggatgacggggtccgagtttgacttcgaggaaatgaagcg 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311294 catcaaggacatctataagaggatgacggggtccgagtttgacttcgaggaaatgaagcg 71311353
Query: 1534 caagaaaaacgacatctacggggaggactaagggccgtgcccggcgctcagttaggacgc 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311354 caagaaaaacgacatctacggggaggactaagggccgtgcccggcgctcagttaggacgc 71311413
Query: 1594 cttccggcctggcggggacgcgcagcggaggacgtcactctcgcgaggctgctctcgtaa 1653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311414 cttccggcctggcggggacgcgcagcggaggacgtcactctcgcgaggctgctctcgtaa 71311473
Query: 1654 ccaggccgggcggcggcagggccctgtgcccgtcaagaccctcccctcctaatatcatgt 1713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311474 ccaggccgggcggcggcagggccctgtgcccgtcaagaccctcccctcctaatatcatgt 71311533
Query: 1714 attaacttgttccaccgcgtggctcttcagaattggcgggttcccacatcccatccatgt 1773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311534 attaacttgttccaccgcgtggctcttcagaattggcgggttcccacatcccatccatgt 71311593
Query: 1774 aaccaatactggcttgttttttctagtgaaggatcagttttaacacattgtgataccgac 1833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311594 aaccaatactggcttgttttttctagtgaaggatcagttttaacacattgtgataccgac 71311653
Query: 1834 acagaactcgatacagcactcgtatcttttaatcagcctggcctttgcccttgcgagctg 1893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311654 acagaactcgatacagcactcgtatcttttaatcagcctggcctttgcccttgcgagctg 71311713
Query: 1894 ctgctgctgctcgcgagctgggcgctggggctgtgtgcagtttgcgacagttggcgtgcg 1953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311714 ctgctgctgctcgcgagctgggcgctggggctgtgtgcagtttgcgacagttggcgtgcg 71311773
Query: 1954 cctgtcctctagacattcaggaaactcggaatccgacattccctcagccgggacagcatc 2013
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 71311774 cctgtcctctagacattcaggagactcggaatccgacattccctcagccgggacagcatc 71311833
Query: 2014 cccgacccctgctcaccctgtacctttaccgcaggcgtgacgaccctgcccgggcagcac 2073
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 71311834 cccgacccctgctcaccctgtacctttacggcaggcgtgacgaccctgcccgggcagcac 71311893
Query: 2074 agctacgcgtttggttcacgtgggcctccactttctaa-ccagctccagacttggagagt 2132
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 71311894 agctacgcgtttggttcacgtgggcctccac-ttctaacccagctccagacttggagagt 71311952
Query: 2133 cgttttggcggaagccgagtgcggtgttttacccctatg-aatggatgcgagcagaggga 2191
||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 71311953 cgttttggcggaagccgagtgcggtgttttaacctaatgaaatggatgcgagcagaggga 71312012
Query: 2192 gg-aacctctcctgaagcaggt-aatacagaagctgcgtttgtgccccag 2239
|| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 71312013 ggaaacctctcctgaagcaggtaaatacagaagctgcgtttgtgccccag 71312062
Score = 529 bits (267), Expect = e-147
Identities = 270/271 (99%)
Strand = Plus / Plus
Query: 2 ccccgtcctctctccctcccccgccccgctcttctcttcccgtctgaggtggcggccggc 61
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71276409 ccccgtcctccctccctcccccgccccgctcttctcttcccgtctgaggtggcggccggc 71276468
Query: 62 tccgtcctcgccagctccgtgttccctgtgctcccgcttccctttcccctcgggcccggg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71276469 tccgtcctcgccagctccgtgttccctgtgctcccgcttccctttcccctcgggcccggg 71276528
Query: 122 ccggcctgcgtgctcccctgcctcctcagggtggccgcctagcccccgaccctagcgggc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71276529 ccggcctgcgtgctcccctgcctcctcagggtggccgcctagcccccgaccctagcgggc 71276588
Query: 182 tgcgccttcggctttctctgggcttccgtccgccccggccccgccatgaatgaggagtac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71276589 tgcgccttcggctttctctgggcttccgtccgccccggccccgccatgaatgaggagtac 71276648
Query: 242 gacgtgatcgtgctgggcaccggcctgacgg 272
|||||||||||||||||||||||||||||||
Sbjct: 71276649 gacgtgatcgtgctgggcaccggcctgacgg 71276679
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 615 gcttaatggggctgtttgaaaaacgtcgcttcagaaaattcctggtgtatgttgccaact 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71303539 gcttaatggggctgtttgaaaaacgtcgcttcagaaaattcctggtgtatgttgccaact 71303598
Query: 675 ttgatgagaacgatcccaggacgtttgagggggttgaccctaagaagacggcgatgcgag 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71303599 ttgatgagaacgatcccaggacgtttgagggggttgaccctaagaagacggcgatgcgag 71303658
Query: 735 aggtgtataagaaatttgacttgggccaagatgttattgattttactgggcatgccctgg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71303659 aggtgtataagaaatttgacttgggccaagatgttattgattttactgggcatgccctgg 71303718
Query: 795 ccctttacagaactgatga 813
|||||||||||||||||||
Sbjct: 71303719 ccctttacagaactgatga 71303737
Score = 345 bits (174), Expect = 6e-92
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 1044 agatcgcgcgctgcaagcagctcatctgcgaccccagctacgtgaaagaccgcgtggaga 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71309206 agatcgcgcgctgcaagcagctcatctgcgaccccagctacgtgaaagaccgcgtggaga 71309265
Query: 1104 aggtgggccaggtgatccgtgtcatctgcatcctgagccaccccatcaagaacaccagtg 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71309266 aggtgggccaggtgatccgtgtcatctgcatcctgagccaccccatcaagaacaccagtg 71309325
Query: 1164 acgccaactcctgccagatcatcattccccagaaccaagtcaaccgcaagtccg 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71309326 acgccaactcctgccagatcatcattccccagaaccaagtcaaccgcaagtccg 71309379
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 1217 gacatctacgtctgcatgatctcctcggcgcacaacgtggctgcgcagggcaagtacatc 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71310810 gacatctacgtctgcatgatctcctcggcgcacaacgtggctgcgcagggcaagtacatc 71310869
Query: 1277 gccatcgccagcaccaccgtggagaccaaggaacccgagaaggagatcagaccggccctg 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71310870 gccatcgccagcaccaccgtggagaccaaggaacccgagaaggagatcagaccggccctg 71310929
Query: 1337 gagctcctggagccgattgagcagaa 1362
||||||||||||||||||||||||||
Sbjct: 71310930 gagctcctggagccgattgagcagaa 71310955
Score = 272 bits (137), Expect = 8e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 479 ggtcagctggttaagatgctgctttttaccgaggtcactcgctacctggatttcaaggtg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71294816 ggtcagctggttaagatgctgctttttaccgaggtcactcgctacctggatttcaaggtg 71294875
Query: 539 accgaagggagcttcgtctacaagggagggaagatctacaaggttccttccactgaggca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71294876 accgaagggagcttcgtctacaagggagggaagatctacaaggttccttccactgaggca 71294935
Query: 599 gaggccctggcgtcgag 615
|||||||||||||||||
Sbjct: 71294936 gaggccctggcgtcgag 71294952
Score = 264 bits (133), Expect = 2e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 814 ctatttagatcaaccatgttgtgaaaccattaataggattaagctttacagtgagtcttt 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71304251 ctatttagatcaaccatgttgtgaaaccattaataggattaagctttacagtgagtcttt 71304310
Query: 874 ggcaagatatggcaaaagcccatacctttatccgctctacggccttggagaactgcctca 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71304311 ggcaagatatggcaaaagcccatacctttatccgctctacggccttggagaactgcctca 71304370
Query: 934 aggatttgcaagg 946
|||||||||||||
Sbjct: 71304371 aggatttgcaagg 71304383
Score = 216 bits (109), Expect = 4e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 271 ggaatgcattctgtcgggtattatgtcagtgaatgggaagaaggttcttcacatggatag 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71290207 ggaatgcattctgtcgggtattatgtcagtgaatgggaagaaggttcttcacatggatag 71290266
Query: 331 aaacccctattacggaggagaaagtgcctcgattacacccctggaagac 379
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71290267 aaacccctattacggaggagaaagtgcctcgattacacccctggaagac 71290315
Score = 202 bits (102), Expect = 6e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 380 ttgtacaaaagatttaatatacctggagccccaccagcctcaatggggagaggaagagac 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71292008 ttgtacaaaagatttaatatacctggagccccaccagcctcaatggggagaggaagagac 71292067
Query: 440 tggaacgttgacctcatccccaagttcctcatggctaatggt 481
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71292068 tggaacgttgacctcatccccaagttcctcatggctaatggt 71292109
Score = 202 bits (102), Expect = 6e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 944 aggctaagtgctatttacggaggtacctacatgctgaataaacccatcgaagaaatcatt 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71307525 aggctaagtgctatttacggaggtacctacatgctgaataaacccatcgaagaaatcatt 71307584
Query: 1004 gtgcagaatggaaaagtgattggtgtaaaatctgaaggagag 1045
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71307585 gtgcagaatggaaaagtgattggtgtaaaatctgaaggagag 71307626
Score = 109 bits (55), Expect = 7e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 1363 attcgtcagcatcagcgacctccttgtcccgaaagatctgggaacagacagccag 1417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311097 attcgtcagcatcagcgacctccttgtcccgaaagatctgggaacagacagccag 71311151
>Sscrofa_Chr01
|| Length = 315321322
Score = 190 bits (96), Expect = 2e-45
Identities = 188/216 (87%), Gaps = 2/216 (0%)
Strand = Plus / Minus
Query: 1668 ggcagggccctgtgcccgtcaagaccctcccctc-ctaatatcatgtattaacttgttcc 1726
||||| ||||||| || || ||||||||||||| |||||||||||||||||||||||||
Sbjct: 234205109 ggcagagccctgtacctgtaaagaccctcccctttctaatatcatgtattaacttgttcc 234205050
Query: 1727 accgcgtggctcttcagaattggcgggttcccacatcc-catccatgtaaccaatactgg 1785
| | ||| ||||||||||||||| ||||| || || | | || || |||||||||||||
Sbjct: 234205049 atggagtgactcttcagaattggcaggttcacatattctcttcaatttaaccaatactgg 234204990
Query: 1786 cttgttttttctagtgaaggatcagttttaacacattgtgataccgacacagaactcgat 1845
||||||||||| |||||||||| |||||||||| ||||||||||||| |||||||| |||
Sbjct: 234204989 cttgttttttccagtgaaggattagttttaacatattgtgataccgatacagaacttgat 234204930
Query: 1846 acagcactcgtatcttttaatcagcctggcctttgc 1881
| |||| | ||||||||||||||||| ||||||||
Sbjct: 234204929 atagcatccctatcttttaatcagcctagcctttgc 234204894
Score = 103 bits (52), Expect = 4e-19
Identities = 127/148 (85%), Gaps = 3/148 (2%)
Strand = Plus / Minus
Query: 2003 gggacagcatccccgacccctgctcaccc-tgtacctttaccgcaggcgtgacgaccctg 2061
||||||||||||| |||| |||||||||| ||||| ||||| ||||| |||||||| |
Sbjct: 234204781 gggacagcatccctgacctctgctcacccctgtacttttacgtcaggcatgacgaccacg 234204722
Query: 2062 cccgggcagcacagctacgcgtttggttcacgtgggcctccactttctaa-ccagctcca 2120
||| |||||||||| ||| ||||||||||| |||||||| || |||||| ||| |||||
Sbjct: 234204721 cccaggcagcacagatacacgtttggttcatgtgggcct-caaattctaacccaactcca 234204663
Query: 2121 gacttggagagtcgttttggcggaagcc 2148
||||| ||||||| |||||| |||||||
Sbjct: 234204662 gactttgagagtcattttggaggaagcc 234204635
>Sscrofa_ChrX
|| Length = 144288218
Score = 170 bits (86), Expect = 2e-39
Identities = 131/146 (89%)
Strand = Plus / Minus
Query: 1217 gacatctacgtctgcatgatctcctcggcgcacaacgtggctgcgcagggcaagtacatc 1276
||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 143688571 gacatctacgtgtgcatgatctcctacgcgcacaacgtggccgcgcagggcaagtacatc 143688512
Query: 1277 gccatcgccagcaccaccgtggagaccaaggaacccgagaaggagatcagaccggccctg 1336
||||||||||||||||||||||||||| ||| ||||| |||||| || |||||||||
Sbjct: 143688511 gccatcgccagcaccaccgtggagaccgcggagcccgaaaaggaggtcgagccggccctg 143688452
Query: 1337 gagctcctggagccgattgagcagaa 1362
||||| |||||||| ||||| |||||
Sbjct: 143688451 gagctgctggagcccattgaccagaa 143688426
Score = 167 bits (84), Expect = 3e-38
Identities = 138/156 (88%)
Strand = Plus / Minus
Query: 1052 cgctgcaagcagctcatctgcgaccccagctacgtgaaagaccgcgtggagaaggtgggc 1111
|||||||||||||| |||||||| ||||||||||| |||||| ||| ||||| |||
Sbjct: 143689006 cgctgcaagcagctgatctgcgatcccagctacgtcccagaccgtgtgcggaaggccggc 143688947
Query: 1112 caggtgatccgtgtcatctgcatcctgagccaccccatcaagaacaccagtgacgccaac 1171
||||| |||||| ||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct: 143688946 caggtcatccgtatcatctgcatcctcagccaccccatcaagaacacgaacgacgccaac 143688887
Query: 1172 tcctgccagatcatcattccccagaaccaagtcaac 1207
||||||||||||||||| ||||||||||| ||||||
Sbjct: 143688886 tcctgccagatcatcatcccccagaaccaggtcaac 143688851
Score = 89.7 bits (45), Expect = 6e-15
Identities = 87/101 (86%)
Strand = Plus / Minus
Query: 1436 tacgacgccaccactcacttcgagaccacctgtgacgacatcaaggacatctataagagg 1495
|||||||||||||| |||||||||||||||||| |||||||||| |||||||| ||| |
Sbjct: 143688146 tacgacgccaccacacacttcgagaccacctgtaacgacatcaaagacatctacaagcgc 143688087
Query: 1496 atgacggggtccgagtttgacttcgaggaaatgaagcgcaa 1536
||| ||| |||| || ||||||||| | |||||||||||
Sbjct: 143688086 atggtgggctccgctttcgacttcgagaacatgaagcgcaa 143688046
Score = 67.9 bits (34), Expect = 2e-08
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 482 cagctggttaagatgctgctttttaccgaggtcactcgctacctggatttcaaggtgacc 541
|||||||| ||||||||||| | || ||||| || ||||| ||||| |||||||||
Sbjct: 143691127 cagctggtgaagatgctgctgtacacggaggtgacgcgctatctggacttcaaggtggtg 143691068
Query: 542 gaagggagcttcgtctacaagggagggaagatctacaaggttccttccac 591
|| || ||||| ||||||||||| || |||||||||||||| || |||||
Sbjct: 143691067 gagggcagctttgtctacaaggggggcaagatctacaaggtgccgtccac 143691018
Score = 61.9 bits (31), Expect = 1e-06
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 435 gagactggaacgttgacctcatccccaagttcctcatggctaatggt 481
||||||||||||||||| | |||||||| ||||||||||| ||||||
Sbjct: 143691327 gagactggaacgttgacttgatccccaaattcctcatggccaatggt 143691281
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 55,184,631
Number of extensions: 347
Number of successful extensions: 347
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 18
Length of query: 2239
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2217
Effective length of database: 2,808,408,574
Effective search space: 6226241808558
Effective search space used: 6226241808558
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)