Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002372
(1657 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028934.1| rab GDP dissociation inhibitor beta [Bos tau... 491 e-138
Alignment gi|NP_776489.1| rab GDP dissociation inhibitor alpha [Bos tauru... 437 e-122
>ref|NP_001028934.1| rab GDP dissociation inhibitor beta [Bos taurus].
Length = 445
Score = 491 bits (1263), Expect = e-138
Identities = 247/271 (91%), Positives = 251/271 (92%)
Frame = +3
Query: 3 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXX 182
FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLAR
Sbjct: 175 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGEL 234
Query: 183 XXXFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 362
FARLSAIYGGTYMLNKPIEEII+QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV
Sbjct: 235 PQGFARLSAIYGGTYMLNKPIEEIIMQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 294
Query: 363 GQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS 542
GQVIRVICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS
Sbjct: 295 GQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS 354
Query: 543 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC 722
TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGT+SQIFISRTYDATTHFETTC
Sbjct: 355 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTC 414
Query: 723 DDIKDIYKRMTGSEFDFEEMKRKKNDIYGED 815
DDIKDIYKRM GSEFDFEEMKRKKNDIYGE+
Sbjct: 415 DDIKDIYKRMMGSEFDFEEMKRKKNDIYGEE 445
>ref|NP_776489.1| rab GDP dissociation inhibitor alpha [Bos taurus].
Length = 447
Score = 437 bits (1123), Expect = e-122
Identities = 214/270 (79%), Positives = 235/270 (87%)
Frame = +3
Query: 3 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXX 182
FDLGQDVIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR
Sbjct: 175 FDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGEL 234
Query: 183 XXXFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 362
FARLSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSYV DRV K
Sbjct: 235 PQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKA 294
Query: 363 GQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS 542
GQVIR+ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAIAS
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354
Query: 543 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC 722
TTVET +PEKE+ PALELLEPI+QKFV+ISDL P D G++SQ+F S +YDATTHFETTC
Sbjct: 355 TTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTC 414
Query: 723 DDIKDIYKRMTGSEFDFEEMKRKKNDIYGE 812
+DIKDIYKRM GS FDFE MKRK+ND++GE
Sbjct: 415 NDIKDIYKRMAGSAFDFENMKRKQNDVFGE 444
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,678,018
Number of extensions: 1569473
Number of successful extensions: 5418
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5414
Number of HSP's successfully gapped: 2
Length of query: 552
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 445
Effective length of database: 14,140,958
Effective search space: 6292726310
Effective search space used: 6292726310
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002372
(1657 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003184.1| rab GDP dissociation inhibitor beta [Canis l... 490 e-138
Alignment gi|NP_001003185.1| rab GDP dissociation inhibitor alpha [Canis ... 437 e-122
Alignment gi|XP_850923.1| PREDICTED: similar to Rab GDP dissociation inhi... 350 2e-96
>ref|NP_001003184.1| rab GDP dissociation inhibitor beta [Canis lupus familiaris].
Length = 445
Score = 490 bits (1262), Expect = e-138
Identities = 246/271 (90%), Positives = 250/271 (92%)
Frame = +3
Query: 3 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXX 182
FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLAR
Sbjct: 175 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGEL 234
Query: 183 XXXFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 362
FARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGE+ARCKQLICDPSYVKDRVEKV
Sbjct: 235 PQGFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEVARCKQLICDPSYVKDRVEKV 294
Query: 363 GQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS 542
GQVIRVICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAI S
Sbjct: 295 GQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIVS 354
Query: 543 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC 722
TT ETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGT+SQIFISRTYDATTHFETTC
Sbjct: 355 TTAETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTC 414
Query: 723 DDIKDIYKRMTGSEFDFEEMKRKKNDIYGED 815
DDIK+IYKRMTGSEFDFEEMKRKKNDIYGED
Sbjct: 415 DDIKNIYKRMTGSEFDFEEMKRKKNDIYGED 445
>ref|NP_001003185.1| rab GDP dissociation inhibitor alpha [Canis lupus familiaris].
Length = 447
Score = 437 bits (1125), Expect = e-122
Identities = 214/270 (79%), Positives = 235/270 (87%)
Frame = +3
Query: 3 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXX 182
FDLGQDVIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR
Sbjct: 175 FDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGEL 234
Query: 183 XXXFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 362
FARLSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSY+ DRV K
Sbjct: 235 PQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKA 294
Query: 363 GQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS 542
GQVIR+ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAIAS
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354
Query: 543 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC 722
TTVET EPEKE+ PALELLEPI+QKFV+ISDL P D G++SQ+F S +YDATTHFETTC
Sbjct: 355 TTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTC 414
Query: 723 DDIKDIYKRMTGSEFDFEEMKRKKNDIYGE 812
+DIKDIYKRM GS FDFE MKRK+ND++GE
Sbjct: 415 NDIKDIYKRMAGSAFDFENMKRKQNDVFGE 444
>ref|XP_850923.1| PREDICTED: similar to Rab GDP dissociation inhibitor beta (Rab GDI
beta) (GDI-2) [Canis familiaris].
Length = 287
Score = 350 bits (899), Expect = 2e-96
Identities = 171/183 (93%), Positives = 180/183 (98%)
Frame = +3
Query: 267 GKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIP 446
G VIGVKSEGE+ARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIP
Sbjct: 105 GPVIGVKSEGEVARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIP 164
Query: 447 QNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVS 626
QNQVNRKSD+YVCMISSAHNVAAQGKYIA+ STTVETK+PEKEIRPALELLEPIE+KFVS
Sbjct: 165 QNQVNRKSDVYVCMISSAHNVAAQGKYIAVVSTTVETKDPEKEIRPALELLEPIERKFVS 224
Query: 627 ISDLLVPKDLGTDSQIFISRTYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRKKNDIY 806
ISD+LVPKDLGT+SQIFISRTY ATTHFETTCDDIK+IYKRMTGSEFDFEEMKR+KNDIY
Sbjct: 225 ISDVLVPKDLGTESQIFISRTYHATTHFETTCDDIKNIYKRMTGSEFDFEEMKRRKNDIY 284
Query: 807 GED 815
GED
Sbjct: 285 GED 287
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,157,727
Number of extensions: 1600161
Number of successful extensions: 5821
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5809
Number of HSP's successfully gapped: 3
Length of query: 552
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 444
Effective length of database: 15,274,216
Effective search space: 6781751904
Effective search space used: 6781751904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002372
(1657 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001108628.1| rab GDP dissociation inhibitor beta isoform ... 486 e-137
Alignment gi|NP_001485.2| rab GDP dissociation inhibitor beta isoform 1 [... 486 e-137
Alignment gi|NP_001484.1| rab GDP dissociation inhibitor alpha [Homo sapi... 434 e-121
>ref|NP_001108628.1| rab GDP dissociation inhibitor beta isoform 2 [Homo sapiens].
Length = 400
Score = 486 bits (1250), Expect = e-137
Identities = 246/271 (90%), Positives = 249/271 (91%)
Frame = +3
Query: 3 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXX 182
FDLGQDVIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR
Sbjct: 130 FDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGEL 189
Query: 183 XXXFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 362
FARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV
Sbjct: 190 PQGFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 249
Query: 363 GQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS 542
GQVIRVICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAI S
Sbjct: 250 GQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVS 309
Query: 543 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC 722
TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGT+SQIFISRTYDATTHFETTC
Sbjct: 310 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTC 369
Query: 723 DDIKDIYKRMTGSEFDFEEMKRKKNDIYGED 815
DDIK+IYKRMTGSEFDFEEMKRKKNDIYGED
Sbjct: 370 DDIKNIYKRMTGSEFDFEEMKRKKNDIYGED 400
>ref|NP_001485.2| rab GDP dissociation inhibitor beta isoform 1 [Homo sapiens].
Length = 445
Score = 486 bits (1250), Expect = e-137
Identities = 246/271 (90%), Positives = 249/271 (91%)
Frame = +3
Query: 3 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXX 182
FDLGQDVIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR
Sbjct: 175 FDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGEL 234
Query: 183 XXXFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 362
FARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV
Sbjct: 235 PQGFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 294
Query: 363 GQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS 542
GQVIRVICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAI S
Sbjct: 295 GQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVS 354
Query: 543 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC 722
TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGT+SQIFISRTYDATTHFETTC
Sbjct: 355 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTC 414
Query: 723 DDIKDIYKRMTGSEFDFEEMKRKKNDIYGED 815
DDIK+IYKRMTGSEFDFEEMKRKKNDIYGED
Sbjct: 415 DDIKNIYKRMTGSEFDFEEMKRKKNDIYGED 445
>ref|NP_001484.1| rab GDP dissociation inhibitor alpha [Homo sapiens].
Length = 447
Score = 434 bits (1116), Expect = e-121
Identities = 211/270 (78%), Positives = 234/270 (86%)
Frame = +3
Query: 3 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXX 182
FDLGQDVIDFTGHALALYRTDDYLDQPC ET+NRIKLYSESLAR
Sbjct: 175 FDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGEL 234
Query: 183 XXXFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 362
FARLSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSY+ DRV K
Sbjct: 235 PQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKA 294
Query: 363 GQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS 542
GQVIR+ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAIAS
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354
Query: 543 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC 722
TTVET +PEKE+ PALELLEPI+QKFV+ISDL P D G +SQ+F S +YDATTHFETTC
Sbjct: 355 TTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTC 414
Query: 723 DDIKDIYKRMTGSEFDFEEMKRKKNDIYGE 812
+DIKDIYKRM G+ FDFE MKRK+ND++GE
Sbjct: 415 NDIKDIYKRMAGTAFDFENMKRKQNDVFGE 444
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,786,448
Number of extensions: 1551641
Number of successful extensions: 5229
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5220
Number of HSP's successfully gapped: 3
Length of query: 552
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 444
Effective length of database: 14,737,052
Effective search space: 6543251088
Effective search space used: 6543251088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002372
(1657 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032138.3| rab GDP dissociation inhibitor beta [Mus muscul... 488 e-138
Alignment gi|NP_034403.1| rab GDP dissociation inhibitor alpha [Mus muscu... 438 e-123
>ref|NP_032138.3| rab GDP dissociation inhibitor beta [Mus musculus].
Length = 445
Score = 488 bits (1257), Expect = e-138
Identities = 245/271 (90%), Positives = 248/271 (91%)
Frame = +3
Query: 3 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXX 182
FDLGQDVIDFTGH+LALYRTDDYLDQPCCETINRIKLYSESLAR
Sbjct: 175 FDLGQDVIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGEL 234
Query: 183 XXXFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 362
FARLSAIYGGTYMLNKPIEEIIVQNGKV+GVKSEGEIARCKQLICDPSYVKDRVEKV
Sbjct: 235 PQGFARLSAIYGGTYMLNKPIEEIIVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKV 294
Query: 363 GQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS 542
GQVIRVICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAI S
Sbjct: 295 GQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVS 354
Query: 543 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC 722
TTVETKEPEKEIRPALELLEPIEQKFVSISDL VPKDLGTDSQIFISR YDATTHFETTC
Sbjct: 355 TTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTC 414
Query: 723 DDIKDIYKRMTGSEFDFEEMKRKKNDIYGED 815
DDIKDIYKRMTGSEFDFEEMKRKKNDIYGED
Sbjct: 415 DDIKDIYKRMTGSEFDFEEMKRKKNDIYGED 445
>ref|NP_034403.1| rab GDP dissociation inhibitor alpha [Mus musculus].
Length = 447
Score = 438 bits (1127), Expect = e-123
Identities = 214/270 (79%), Positives = 236/270 (87%)
Frame = +3
Query: 3 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXX 182
FDLGQDVIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR
Sbjct: 175 FDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGEL 234
Query: 183 XXXFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 362
FARLSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSY+ DRV+K
Sbjct: 235 PQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKA 294
Query: 363 GQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS 542
GQVIR+ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAIAS
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354
Query: 543 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC 722
TTVET EPEKE+ PALELLEPI+QKFV+ISDL P D G++SQ+F S +YDATTHFETTC
Sbjct: 355 TTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTC 414
Query: 723 DDIKDIYKRMTGSEFDFEEMKRKKNDIYGE 812
+DIKDIYKRM GS FDFE MKRK+ND++GE
Sbjct: 415 NDIKDIYKRMAGSAFDFENMKRKQNDVFGE 444
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,725,589
Number of extensions: 1290009
Number of successful extensions: 4293
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4286
Number of HSP's successfully gapped: 2
Length of query: 552
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 446
Effective length of database: 12,433,743
Effective search space: 5545449378
Effective search space used: 5545449378
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002372
(1657 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001643.1| rab GDP dissociation inhibitor beta [Sus scr... 494 e-140
Alignment gi|XP_003360571.1| PREDICTED: rab GDP dissociation inhibitor al... 438 e-123
Alignment gi|XP_003360570.1| PREDICTED: rab GDP dissociation inhibitor al... 438 e-123
>ref|NP_001001643.1| rab GDP dissociation inhibitor beta [Sus scrofa].
Length = 445
Score = 494 bits (1272), Expect = e-140
Identities = 250/271 (92%), Positives = 251/271 (92%)
Frame = +3
Query: 3 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXX 182
FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLAR
Sbjct: 175 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGEL 234
Query: 183 XXXFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 362
FARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV
Sbjct: 235 PQGFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 294
Query: 363 GQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS 542
GQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS
Sbjct: 295 GQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS 354
Query: 543 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC 722
TTVETKEPEKEIRPALELL+PIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC
Sbjct: 355 TTVETKEPEKEIRPALELLKPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC 414
Query: 723 DDIKDIYKRMTGSEFDFEEMKRKKNDIYGED 815
DIKDIYKRMTGSEFDFEEMKRKKNDIYGED
Sbjct: 415 GDIKDIYKRMTGSEFDFEEMKRKKNDIYGED 445
>ref|XP_003360571.1| PREDICTED: rab GDP dissociation inhibitor alpha-like isoform 2 [Sus
scrofa].
Length = 402
Score = 438 bits (1127), Expect = e-123
Identities = 215/270 (79%), Positives = 235/270 (87%)
Frame = +3
Query: 3 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXX 182
FDLGQDVIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR
Sbjct: 130 FDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGEL 189
Query: 183 XXXFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 362
FARLSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSYV DRV K
Sbjct: 190 PQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKA 249
Query: 363 GQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS 542
GQVIR+ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAIAS
Sbjct: 250 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 309
Query: 543 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC 722
TTVET EPEKE+ PALELLEPI+QKFV+ISDL P D G++SQ+F S +YDATTHFETTC
Sbjct: 310 TTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPVDDGSESQVFCSCSYDATTHFETTC 369
Query: 723 DDIKDIYKRMTGSEFDFEEMKRKKNDIYGE 812
+DIKDIYKRM GS FDFE MKRK+ND++GE
Sbjct: 370 NDIKDIYKRMVGSAFDFENMKRKQNDVFGE 399
>ref|XP_003360570.1| PREDICTED: rab GDP dissociation inhibitor alpha-like isoform 1 [Sus
scrofa].
Length = 447
Score = 438 bits (1127), Expect = e-123
Identities = 215/270 (79%), Positives = 235/270 (87%)
Frame = +3
Query: 3 FDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARXXXXXXXXXXXXXXXX 182
FDLGQDVIDFTGHALALYRTDDYLDQPC ETINRIKLYSESLAR
Sbjct: 175 FDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGEL 234
Query: 183 XXXFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKV 362
FARLSAIYGGTYMLNKP+++II++NGKV+GVKSEGE+ARCKQLICDPSYV DRV K
Sbjct: 235 PQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKA 294
Query: 363 GQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIAS 542
GQVIR+ICILSHPIKNT+DANSCQIIIPQNQVNRKSDIYVCMIS AHNVAAQGKYIAIAS
Sbjct: 295 GQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIAS 354
Query: 543 TTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTC 722
TTVET EPEKE+ PALELLEPI+QKFV+ISDL P D G++SQ+F S +YDATTHFETTC
Sbjct: 355 TTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPVDDGSESQVFCSCSYDATTHFETTC 414
Query: 723 DDIKDIYKRMTGSEFDFEEMKRKKNDIYGE 812
+DIKDIYKRM GS FDFE MKRK+ND++GE
Sbjct: 415 NDIKDIYKRMVGSAFDFENMKRKQNDVFGE 444
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,460,161
Number of extensions: 1048302
Number of successful extensions: 3699
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3691
Number of HSP's successfully gapped: 3
Length of query: 552
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 448
Effective length of database: 8,754,644
Effective search space: 3922080512
Effective search space used: 3922080512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002372
(1657 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 1820 0.0
Sscrofa_Chr01 190 2e-45
Sscrofa_ChrX 167 2e-38
>Sscrofa_Chr10
|| Length = 79102373
Score = 1820 bits (918), Expect = 0.0
Identities = 948/958 (98%)
Strand = Plus / Plus
Query: 668 ccagatcttcatctcccgcacgtacgacgccaccactcacttcgagaccacctgtgacga 727
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311234 ccagatcttcatatcccgcacgtacgacgccaccactcacttcgagaccacctgtgacga 71311293
Query: 728 catcaaggacatctataagaggatgacggggtccgagttcgacttcgaggaaatgaagcg 787
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 71311294 catcaaggacatctataagaggatgacggggtccgagtttgacttcgaggaaatgaagcg 71311353
Query: 788 caagaaaaacgacatctacggggaggactaagggccgtgcccggcgctcagttaggacgc 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311354 caagaaaaacgacatctacggggaggactaagggccgtgcccggcgctcagttaggacgc 71311413
Query: 848 cttccggcctggcggggacgcgcagcggaggacgtcactctcgcgaggctgctctcgtaa 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311414 cttccggcctggcggggacgcgcagcggaggacgtcactctcgcgaggctgctctcgtaa 71311473
Query: 908 ccaggccgggcggcggcagggccctgtgcccgtcaagaccctcccctcctaatatcatgt 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311474 ccaggccgggcggcggcagggccctgtgcccgtcaagaccctcccctcctaatatcatgt 71311533
Query: 968 attaacttgttccaccgcgtggctcttcagaattggcgggttcccacatcccatccatgt 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311534 attaacttgttccaccgcgtggctcttcagaattggcgggttcccacatcccatccatgt 71311593
Query: 1028 aaccaatactggcttgttttttctagtgaaggatcagttttaacacattgtgataccgac 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311594 aaccaatactggcttgttttttctagtgaaggatcagttttaacacattgtgataccgac 71311653
Query: 1088 acagaactcgatacagcactcgtatcttttaatcagcctggcctttgcccttgcgagctg 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311654 acagaactcgatacagcactcgtatcttttaatcagcctggcctttgcccttgcgagctg 71311713
Query: 1148 ctgctgctgctcgcgagctgggcgctggggctgtgtgcagtttgcgacagttggcgtgcg 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311714 ctgctgctgctcgcgagctgggcgctggggctgtgtgcagtttgcgacagttggcgtgcg 71311773
Query: 1208 cctgtcctctagacgttcaggagactcggaatccgacattccctcagccgggacagcatc 1267
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311774 cctgtcctctagacattcaggagactcggaatccgacattccctcagccgggacagcatc 71311833
Query: 1268 cccgacccctgctcaccctgtacctttacggcaggcgtgacgaccctgcccgggcagcac 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311834 cccgacccctgctcaccctgtacctttacggcaggcgtgacgaccctgcccgggcagcac 71311893
Query: 1328 agctacgcgtttggttcacgtgggcctccacttctaacccagctccagacttggagagtc 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311894 agctacgcgtttggttcacgtgggcctccacttctaacccagctccagacttggagagtc 71311953
Query: 1388 gttttggcggaagccgagtgcggtgttttaacctaatgaaatggatgcgagcagagggag 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311954 gttttggcggaagccgagtgcggtgttttaacctaatgaaatggatgcgagcagagggag 71312013
Query: 1448 gaaacctctcctgaagcaggtaaatacagaagctgcgtttgtgccccaggtgtggcttcc 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71312014 gaaacctctcctgaagcaggtaaatacagaagctgcgtttgtgccccaggtgtggcttcc 71312073
Query: 1508 tccgcggaccaagccgcagggtggcgtggaggtgacaaaaccctgcgtccggggggtcgg 1567
||||||||||||||||||||||||||||||||||||| | ||||||||||| || |||||
Sbjct: 71312074 tccgcggaccaagccgcagggtggcgtggaggtgacagagccctgcgtccgtggtgtcgg 71312133
Query: 1568 tctcacaaaggctcccgatgatttctgtcctgcaaattaaacccaaactctggaaacc 1625
||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 71312134 tctcagaaaggctcccgatgatttctgtcctgcaaaataaagccaaactctggaaacc 71312191
Score = 345 bits (174), Expect = 5e-92
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 298 agatcgcgcgctgcaagcagctcatctgcgaccccagctacgtgaaagaccgcgtggaga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71309206 agatcgcgcgctgcaagcagctcatctgcgaccccagctacgtgaaagaccgcgtggaga 71309265
Query: 358 aggtgggccaggtgatccgtgtcatctgcatcctgagccaccccatcaagaacaccagtg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71309266 aggtgggccaggtgatccgtgtcatctgcatcctgagccaccccatcaagaacaccagtg 71309325
Query: 418 acgccaactcctgccagatcatcattccccagaaccaagtcaaccgcaagtccg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71309326 acgccaactcctgccagatcatcattccccagaaccaagtcaaccgcaagtccg 71309379
Score = 281 bits (142), Expect = 6e-73
Identities = 145/146 (99%)
Strand = Plus / Plus
Query: 471 gacatctacgtctgcatgatctcctcggcgcacaacgtggctgcgcagggcaagtacatc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71310810 gacatctacgtctgcatgatctcctcggcgcacaacgtggctgcgcagggcaagtacatc 71310869
Query: 531 gccatcgccagcaccaccgtggagaccaaggaacccgagaaggagatcagaccagccctg 590
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 71310870 gccatcgccagcaccaccgtggagaccaaggaacccgagaaggagatcagaccggccctg 71310929
Query: 591 gagctcctggagccgattgagcagaa 616
||||||||||||||||||||||||||
Sbjct: 71310930 gagctcctggagccgattgagcagaa 71310955
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 68 ctatttagatcaaccatgttgtgaaaccattaataggattaagctttacagtgagtcttt 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71304251 ctatttagatcaaccatgttgtgaaaccattaataggattaagctttacagtgagtcttt 71304310
Query: 128 ggcaagatatggcaaaagcccatacctttatccgctctacggccttggagaactgcctca 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71304311 ggcaagatatggcaaaagcccatacctttatccgctctacggccttggagaactgcctca 71304370
Query: 188 aggatttgcaagg 200
|||||||||||||
Sbjct: 71304371 aggatttgcaagg 71304383
Score = 194 bits (98), Expect = 1e-46
Identities = 101/102 (99%)
Strand = Plus / Plus
Query: 198 aggctaagtgctatttatggaggtacctacatgctgaataaacccatcgaagaaatcatt 257
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71307525 aggctaagtgctatttacggaggtacctacatgctgaataaacccatcgaagaaatcatt 71307584
Query: 258 gtgcagaatggaaaagtgattggtgtaaaatctgaaggagag 299
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71307585 gtgcagaatggaaaagtgattggtgtaaaatctgaaggagag 71307626
Score = 117 bits (59), Expect = 2e-23
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 2 atttgacttgggccaagatgttattgattttactgggcatgccctagccctttacagaac 61
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 71303672 atttgacttgggccaagatgttattgattttactgggcatgccctggccctttacagaac 71303731
Query: 62 tga 64
|||
Sbjct: 71303732 tga 71303734
Score = 109 bits (55), Expect = 5e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 617 attcgtcagcatcagcgacctccttgtcccgaaagatctgggaacagacagccag 671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71311097 attcgtcagcatcagcgacctccttgtcccgaaagatctgggaacagacagccag 71311151
>Sscrofa_Chr01
|| Length = 315321322
Score = 190 bits (96), Expect = 2e-45
Identities = 188/216 (87%), Gaps = 2/216 (0%)
Strand = Plus / Minus
Query: 922 ggcagggccctgtgcccgtcaagaccctcccctc-ctaatatcatgtattaacttgttcc 980
||||| ||||||| || || ||||||||||||| |||||||||||||||||||||||||
Sbjct: 234205109 ggcagagccctgtacctgtaaagaccctcccctttctaatatcatgtattaacttgttcc 234205050
Query: 981 accgcgtggctcttcagaattggcgggttcccacatcc-catccatgtaaccaatactgg 1039
| | ||| ||||||||||||||| ||||| || || | | || || |||||||||||||
Sbjct: 234205049 atggagtgactcttcagaattggcaggttcacatattctcttcaatttaaccaatactgg 234204990
Query: 1040 cttgttttttctagtgaaggatcagttttaacacattgtgataccgacacagaactcgat 1099
||||||||||| |||||||||| |||||||||| ||||||||||||| |||||||| |||
Sbjct: 234204989 cttgttttttccagtgaaggattagttttaacatattgtgataccgatacagaacttgat 234204930
Query: 1100 acagcactcgtatcttttaatcagcctggcctttgc 1135
| |||| | ||||||||||||||||| ||||||||
Sbjct: 234204929 atagcatccctatcttttaatcagcctagcctttgc 234204894
Score = 186 bits (94), Expect = 3e-44
Identities = 233/275 (84%), Gaps = 7/275 (2%)
Strand = Plus / Minus
Query: 1257 gggacagcatccccgacccctgctcaccc-tgtacctttacggcaggcgtgacgaccctg 1315
||||||||||||| |||| |||||||||| ||||| |||||| ||||| |||||||| |
Sbjct: 234204781 gggacagcatccctgacctctgctcacccctgtacttttacgtcaggcatgacgaccacg 234204722
Query: 1316 cccgggcagcacagctacgcgtttggttcacgtgggcctccacttctaacccagctccag 1375
||| |||||||||| ||| ||||||||||| ||||||||| | |||||||||| ||||||
Sbjct: 234204721 cccaggcagcacagatacacgtttggttcatgtgggcctcaaattctaacccaactccag 234204662
Query: 1376 acttggagagtcgttttggcggaagcc-gagtgcggtgttttaacctaatgaaatggatg 1434
|||| ||||||| |||||| ||||||| | ||| ||||| ||||||||||||||| ||||
Sbjct: 234204661 actttgagagtcattttggaggaagcctgtgtgtggtgtcttaacctaatgaaattgatg 234204602
Query: 1435 cgagcagaggg-aggaaacctctcctgaagcaggtaaatacagaagctgcgtttgtgccc 1493
|| ||||||| | |||||||||||| ||||||||| |||||||| |||| |||
Sbjct: 234204601 agaacagaggggaagaaacctctcctaaagcaggta----cagaagcttttcttgtaccc 234204546
Query: 1494 caggtgtggcttcctccgcggaccaagccgcaggg 1528
||||||||||| |||| | |||||||| ||||||
Sbjct: 234204545 taggtgtggctttctccacagaccaagctgcaggg 234204511
>Sscrofa_ChrX
|| Length = 144288218
Score = 167 bits (84), Expect = 2e-38
Identities = 138/156 (88%)
Strand = Plus / Minus
Query: 306 cgctgcaagcagctcatctgcgaccccagctacgtgaaagaccgcgtggagaaggtgggc 365
|||||||||||||| |||||||| ||||||||||| |||||| ||| ||||| |||
Sbjct: 143689006 cgctgcaagcagctgatctgcgatcccagctacgtcccagaccgtgtgcggaaggccggc 143688947
Query: 366 caggtgatccgtgtcatctgcatcctgagccaccccatcaagaacaccagtgacgccaac 425
||||| |||||| ||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct: 143688946 caggtcatccgtatcatctgcatcctcagccaccccatcaagaacacgaacgacgccaac 143688887
Query: 426 tcctgccagatcatcattccccagaaccaagtcaac 461
||||||||||||||||| ||||||||||| ||||||
Sbjct: 143688886 tcctgccagatcatcatcccccagaaccaggtcaac 143688851
Score = 163 bits (82), Expect = 4e-37
Identities = 130/146 (89%)
Strand = Plus / Minus
Query: 471 gacatctacgtctgcatgatctcctcggcgcacaacgtggctgcgcagggcaagtacatc 530
||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 143688571 gacatctacgtgtgcatgatctcctacgcgcacaacgtggccgcgcagggcaagtacatc 143688512
Query: 531 gccatcgccagcaccaccgtggagaccaaggaacccgagaaggagatcagaccagccctg 590
||||||||||||||||||||||||||| ||| ||||| |||||| || || ||||||
Sbjct: 143688511 gccatcgccagcaccaccgtggagaccgcggagcccgaaaaggaggtcgagccggccctg 143688452
Query: 591 gagctcctggagccgattgagcagaa 616
||||| |||||||| ||||| |||||
Sbjct: 143688451 gagctgctggagcccattgaccagaa 143688426
Score = 97.6 bits (49), Expect = 2e-17
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 690 tacgacgccaccactcacttcgagaccacctgtgacgacatcaaggacatctataagagg 749
|||||||||||||| |||||||||||||||||| |||||||||| |||||||| ||| |
Sbjct: 143688146 tacgacgccaccacacacttcgagaccacctgtaacgacatcaaagacatctacaagcgc 143688087
Query: 750 atgacggggtccgagttcgacttcgaggaaatgaagcgcaa 790
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Sbjct: 143688086 atggtgggctccgctttcgacttcgagaacatgaagcgcaa 143688046
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,578,620
Number of extensions: 214
Number of successful extensions: 214
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 12
Length of query: 1657
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1635
Effective length of database: 2,808,408,574
Effective search space: 4591748018490
Effective search space used: 4591748018490
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)