Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002374
(998 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091491.1| renin receptor [Bos taurus]. 476 e-134
>ref|NP_001091491.1| renin receptor [Bos taurus].
Length = 351
Score = 476 bits (1225), Expect = e-134
Identities = 245/273 (89%), Positives = 251/273 (91%)
Frame = +1
Query: 169 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 348
NEFSILRSPGSVVFR+GNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 18 NEFSILRSPGSVVFRNGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 77
Query: 349 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 528
MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 78 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 137
Query: 529 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 708
VGKANSVFEDLSVTLRQLR+RLFQE EVDLLFLSELQVL DISSL
Sbjct: 138 VGKANSVFEDLSVTLRQLRNRLFQENSVLTSLPLNSLSRNNEVDLLFLSELQVLRDISSL 197
Query: 709 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSGTFRDASKILVDALQKFADDMYNLYG 888
LSRHKHLAKDHSPDLYSLELAGLDEIGK YGEDS FRDASKIL+DALQKFADDMYNLYG
Sbjct: 198 LSRHKHLAKDHSPDLYSLELAGLDEIGKHYGEDSEQFRDASKILIDALQKFADDMYNLYG 257
Query: 889 GNAVVELMTVRSFDTSLVKKTKTILEAKQVKDP 987
GNAVVEL+TVRSFDTSLV+KT+ ILE KQVKDP
Sbjct: 258 GNAVVELVTVRSFDTSLVRKTRNILETKQVKDP 290
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,333,511
Number of extensions: 965721
Number of successful extensions: 3135
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3127
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002374
(998 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,919,569
Number of extensions: 989217
Number of successful extensions: 3171
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3154
Number of HSP's successfully gapped: 0
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002374
(998 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005756.2| renin receptor [Homo sapiens]. 479 e-135
>ref|NP_005756.2| renin receptor [Homo sapiens].
Length = 350
Score = 479 bits (1232), Expect = e-135
Identities = 245/276 (88%), Positives = 256/276 (92%)
Frame = +1
Query: 169 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 348
NEFSIL+SPGSVVFR+GNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 17 NEFSILKSPGSVVFRNGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 76
Query: 349 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 528
MVMVKGV+KLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 77 MVMVKGVNKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 136
Query: 529 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 708
VGKANSVFEDLSVTLRQLR+RLFQE EVDLLFLSELQVLHDISSL
Sbjct: 137 VGKANSVFEDLSVTLRQLRNRLFQENSVLSSLPLNSLSRNNEVDLLFLSELQVLHDISSL 196
Query: 709 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSGTFRDASKILVDALQKFADDMYNLYG 888
LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDS FRDASKILVDALQKFADDMY+LYG
Sbjct: 197 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYSLYG 256
Query: 889 GNAVVELMTVRSFDTSLVKKTKTILEAKQVKDPPSP 996
GNAVVEL+TV+SFDTSL++KT+TILEAKQ K+P SP
Sbjct: 257 GNAVVELVTVKSFDTSLIRKTRTILEAKQAKNPASP 292
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,314,656
Number of extensions: 978933
Number of successful extensions: 3224
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3216
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002374
(998 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081715.1| renin receptor precursor [Mus musculus]. 466 e-132
>ref|NP_081715.1| renin receptor precursor [Mus musculus].
Length = 350
Score = 466 bits (1200), Expect = e-132
Identities = 239/269 (88%), Positives = 250/269 (92%)
Frame = +1
Query: 169 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 348
NEFSILRSPGSVVFR+GNWPIPG+RIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRAT+
Sbjct: 18 NEFSILRSPGSVVFRNGNWPIPGDRIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATI 77
Query: 349 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 528
MVMVKGVDKLALP GSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 78 MVMVKGVDKLALPAGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 137
Query: 529 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 708
VGKANSVFEDLSVTLRQLR+RLFQE EVDLLFLSELQVLHDISSL
Sbjct: 138 VGKANSVFEDLSVTLRQLRNRLFQENSLLNSLPLNSLSRNNEVDLLFLSELQVLHDISSL 197
Query: 709 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSGTFRDASKILVDALQKFADDMYNLYG 888
LSRHKHLAKDHSPDLYSLELAGLDE+GKRYGEDS FRDASKILVDALQKFADDMY+LYG
Sbjct: 198 LSRHKHLAKDHSPDLYSLELAGLDELGKRYGEDSEQFRDASKILVDALQKFADDMYSLYG 257
Query: 889 GNAVVELMTVRSFDTSLVKKTKTILEAKQ 975
GNAVVEL+TV+SFDTSLV+K++TILEAKQ
Sbjct: 258 GNAVVELVTVKSFDTSLVRKSRTILEAKQ 286
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,662,428
Number of extensions: 836593
Number of successful extensions: 2671
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2669
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002374
(998 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135070.1| PREDICTED: renin receptor-like [Sus scrofa]. 495 e-140
Alignment gi|XP_003360317.1| PREDICTED: hypothetical protein LOC100627392... 316 1e-86
Alignment gi|XP_003360905.1| PREDICTED: renin receptor-like, partial [Sus... 300 6e-82
>ref|XP_003135070.1| PREDICTED: renin receptor-like [Sus scrofa].
Length = 351
Score = 495 bits (1274), Expect = e-140
Identities = 255/276 (92%), Positives = 258/276 (93%)
Frame = +1
Query: 169 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 348
NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 18 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 77
Query: 349 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 528
MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 78 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 137
Query: 529 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 708
VGKANSVFEDLSVTLRQLRSRLFQE EVDLLFLSELQVLHDISSL
Sbjct: 138 VGKANSVFEDLSVTLRQLRSRLFQENSILSLLPLNSLSRNNEVDLLFLSELQVLHDISSL 197
Query: 709 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSGTFRDASKILVDALQKFADDMYNLYG 888
LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDS FRDASKILVDALQKFADDMYNLYG
Sbjct: 198 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 257
Query: 889 GNAVVELMTVRSFDTSLVKKTKTILEAKQVKDPPSP 996
GNAVVEL+TVRSFDTSLV+KT+TILEAKQVKDPPSP
Sbjct: 258 GNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSP 293
>ref|XP_003360317.1| PREDICTED: hypothetical protein LOC100627392 [Sus scrofa].
Length = 515
Score = 316 bits (809), Expect = 1e-86
Identities = 164/181 (90%), Positives = 165/181 (91%)
Frame = +1
Query: 169 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 348
NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 295 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 354
Query: 349 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 528
MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 355 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 414
Query: 529 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 708
VGKANSVFEDLSVTLRQLRSRLFQE EVDLLFLSELQVLHDISSL
Sbjct: 415 VGKANSVFEDLSVTLRQLRSRLFQENSILSLLPLNSLSRNNEVDLLFLSELQVLHDISSL 474
Query: 709 L 711
+
Sbjct: 475 V 475
>ref|XP_003360905.1| PREDICTED: renin receptor-like, partial [Sus scrofa].
Length = 279
Score = 300 bits (769), Expect = 6e-82
Identities = 157/180 (87%), Positives = 157/180 (87%)
Frame = +1
Query: 169 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 348
NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 100 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 159
Query: 349 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 528
MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 160 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 219
Query: 529 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 708
VGKANSVFEDLSVT LFQE EVDLLFLSELQVLHDISSL
Sbjct: 220 VGKANSVFEDLSVTXXXXXXXLFQENSILSLLPLNSLSRNNEVDLLFLSELQVLHDISSL 279
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,973,631
Number of extensions: 614454
Number of successful extensions: 1992
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1989
Number of HSP's successfully gapped: 3
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002374
(998 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 317 6e-84
gb|GL893021.2| Sus scrofa unplaced genomic scaffold ChrUScaf906 264 8e-68
>Sscrofa_ChrX
|| Length = 144288218
Score = 317 bits (160), Expect = 6e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1 ctcaaggagtcggggcgagctagagctcgtcaccccctcgtgctgtggtggtcgctcgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40369369 ctcaaggagtcggggcgagctagagctcgtcaccccctcgtgctgtggtggtcgctcgcg 40369428
Query: 61 ttccgccggcccgttcgtgtgtgtgttgtcctgcacagctgcggccgccgcggaaccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40369429 ttccgccggcccgttcgtgtgtgtgttgtcctgcacagctgcggccgccgcggaaccatg 40369488
Query: 121 gctgtgctcgtcgccctcttgtccttggtggtggcgggtg 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40369489 gctgtgctcgtcgccctcttgtccttggtggtggcgggtg 40369528
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 517 agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaacacttaga 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40383677 agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaacacttaga 40383736
Query: 577 caactccgcagtcgactgtttcaagaaaactctattctcagtttacttcccctcaattct 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40383737 caactccgcagtcgactgtttcaagaaaactctattctcagtttacttcccctcaattct 40383796
Query: 637 ctgagtaggaacaatgaagt 656
||||||||||||||||||||
Sbjct: 40383797 ctgagtaggaacaatgaagt 40383816
Score = 276 bits (139), Expect = 2e-71
Identities = 148/151 (98%)
Strand = Plus / Plus
Query: 708 gttgtctcgacacaagcatctagccaaggatcattctcctgatttatactcactggagct 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40393399 gttgtctcgacacaagcatctagccaaggatcattctcctgatttatactcactggagct 40393458
Query: 768 ggcaggtttggatgaaattgggaaacgttacggggaagactctggaacatttagagatgc 827
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 40393459 ggcaggtttggatgaaattgggaaacgttacggggaagactctgaacaatttagagatgc 40393518
Query: 828 ttctaagatccttgtcgatgctctgcaaaag 858
|||||||||||||||||||||||||||||||
Sbjct: 40393519 ttctaagatccttgtcgatgctctgcaaaag 40393549
Score = 264 bits (133), Expect = 8e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 157 ggtgtcttagggaatgagtttagcatattaagatcaccagggtctgttgttttccgggat 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40375708 ggtgtcttagggaatgagtttagcatattaagatcaccagggtctgttgttttccgggat 40375767
Query: 217 ggaaattggcctataccaggagagcgaatcccagacgtggctgcattatccatgggcttc 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40375768 ggaaattggcctataccaggagagcgaatcccagacgtggctgcattatccatgggcttc 40375827
Query: 277 tctgtcaaagaag 289
|||||||||||||
Sbjct: 40375828 tctgtcaaagaag 40375840
Score = 264 bits (133), Expect = 8e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 289 gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40377982 gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 40378041
Query: 349 atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcatac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40378042 atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcatac 40378101
Query: 409 cctttggagaatg 421
|||||||||||||
Sbjct: 40378102 cctttggagaatg 40378114
Score = 210 bits (106), Expect = 1e-51
Identities = 118/122 (96%)
Strand = Plus / Plus
Query: 857 agtttgcagatgacatgtacaatctttatggtgggaatgcagtggtcgagttaatgacgg 916
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 40394047 agtttgcagatgacatgtacaatctttatggtgggaatgcagtggtcgagttagtgacgg 40394106
Query: 917 tcaggtcattcgacacatcccttgtgaagaagaccaagactatccttgaggcaaaacaag 976
||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct: 40394107 tcaggtcattcgacacatcccttgtgaggaagacaaggactatccttgaggcaaaacaag 40394166
Query: 977 tg 978
||
Sbjct: 40394167 tg 40394168
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 421 gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40383425 gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 40383484
Query: 481 actcctgtggttttgcagttggcacccagtgaggaa 516
||||||||||||||||||||||||||||||||||||
Sbjct: 40383485 actcctgtggttttgcagttggcacccagtgaggaa 40383520
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 655 gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40384961 gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 40385014
>gb|GL893021.2| Sus scrofa unplaced genomic scaffold ChrUScaf906
Length = 62095
Score = 264 bits (133), Expect = 8e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 289 gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53794 gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 53853
Query: 349 atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcatac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53854 atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcatac 53913
Query: 409 cctttggagaatg 421
|||||||||||||
Sbjct: 53914 cctttggagaatg 53926
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 421 gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59101 gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 59160
Query: 481 actcctgtggttttgcagttggcacccagtgaggaa 516
||||||||||||||||||||||||||||||||||||
Sbjct: 59161 actcctgtggttttgcagttggcacccagtgaggaa 59196
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 591 actgtttcaagaaaactctattctcagtttacttcccctcaattctctgagtaggaacaa 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59506 actgtttcaagaaaactctattctcagtttacttcccctcaattctctgagtaggaacaa 59565
Query: 651 tgaagt 656
||||||
Sbjct: 59566 tgaagt 59571
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 655 gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60569 gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 60622
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 517 agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaac 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59353 agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaac 59405
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,554,070
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 13
Length of query: 998
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 977
Effective length of database: 2,808,413,156
Effective search space: 2743819653412
Effective search space used: 2743819653412
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)