Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002375
(1125 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091491.1| renin receptor [Bos taurus]. 525 e-149
>ref|NP_001091491.1| renin receptor [Bos taurus].
Length = 351
Score = 525 bits (1351), Expect(2) = e-149
Identities = 268/302 (88%), Positives = 277/302 (91%)
Frame = +1
Query: 169 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 348
NEFSILRSPGSVVFR+GNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 18 NEFSILRSPGSVVFRNGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 77
Query: 349 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 528
MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 78 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 137
Query: 529 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 708
VGKANSVFEDLSVTLRQLR+RLFQE EVDLLFLSELQVL DISSL
Sbjct: 138 VGKANSVFEDLSVTLRQLRNRLFQENSVLTSLPLNSLSRNNEVDLLFLSELQVLRDISSL 197
Query: 709 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 888
LSRHKHLAKDHSPDLYSLELAGLDEIGK YGEDSEQFRDASKIL+DALQKFADDMYNLYG
Sbjct: 198 LSRHKHLAKDHSPDLYSLELAGLDEIGKHYGEDSEQFRDASKILIDALQKFADDMYNLYG 257
Query: 889 GNAVVELVTVRSFDTSLVKKTRTILEAKQVKDPPSPYNLAYKYNGDYPVVFHMILWDMIA 1068
GNAVVELVTVRSFDTSLV+KTR ILE KQVKDP + YNLAYKYN +YPVVF+++LW MI
Sbjct: 258 GNAVVELVTVRSFDTSLVRKTRNILETKQVKDPSTTYNLAYKYNFEYPVVFNLVLWIMIG 317
Query: 1069 LA 1074
LA
Sbjct: 318 LA 319
Score = 23.5 bits (49), Expect(2) = e-149
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 1094 FXIWDMDPGY 1123
+ IW+MDPGY
Sbjct: 327 YNIWNMDPGY 336
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,519,951
Number of extensions: 1110803
Number of successful extensions: 3546
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3538
Number of HSP's successfully gapped: 2
Length of query: 375
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,240,222
Effective search space: 3859100162
Effective search space used: 3859100162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002375
(1125 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,322,910
Number of extensions: 1135953
Number of successful extensions: 3550
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3533
Number of HSP's successfully gapped: 0
Length of query: 375
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 271
Effective length of database: 15,407,560
Effective search space: 4175448760
Effective search space used: 4175448760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002375
(1125 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005756.2| renin receptor [Homo sapiens]. 527 e-150
>ref|NP_005756.2| renin receptor [Homo sapiens].
Length = 350
Score = 527 bits (1358), Expect(2) = e-150
Identities = 269/302 (89%), Positives = 281/302 (93%)
Frame = +1
Query: 169 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 348
NEFSIL+SPGSVVFR+GNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 17 NEFSILKSPGSVVFRNGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 76
Query: 349 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 528
MVMVKGV+KLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 77 MVMVKGVNKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 136
Query: 529 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 708
VGKANSVFEDLSVTLRQLR+RLFQE EVDLLFLSELQVLHDISSL
Sbjct: 137 VGKANSVFEDLSVTLRQLRNRLFQENSVLSSLPLNSLSRNNEVDLLFLSELQVLHDISSL 196
Query: 709 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 888
LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMY+LYG
Sbjct: 197 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYSLYG 256
Query: 889 GNAVVELVTVRSFDTSLVKKTRTILEAKQVKDPPSPYNLAYKYNGDYPVVFHMILWDMIA 1068
GNAVVELVTV+SFDTSL++KTRTILEAKQ K+P SPYNLAYKYN +Y VVF+M+LW MIA
Sbjct: 257 GNAVVELVTVKSFDTSLIRKTRTILEAKQAKNPASPYNLAYKYNFEYSVVFNMVLWIMIA 316
Query: 1069 LA 1074
LA
Sbjct: 317 LA 318
Score = 23.5 bits (49), Expect(2) = e-150
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 1094 FXIWDMDPGY 1123
+ IW+MDPGY
Sbjct: 326 YNIWNMDPGY 335
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,669,458
Number of extensions: 1127958
Number of successful extensions: 3598
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3590
Number of HSP's successfully gapped: 2
Length of query: 375
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,868,908
Effective search space: 4029474068
Effective search space used: 4029474068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002375
(1125 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081715.1| renin receptor precursor [Mus musculus]. 511 e-145
>ref|NP_081715.1| renin receptor precursor [Mus musculus].
Length = 350
Score = 511 bits (1317), Expect(2) = e-145
Identities = 263/302 (87%), Positives = 278/302 (92%)
Frame = +1
Query: 169 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 348
NEFSILRSPGSVVFR+GNWPIPG+RIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRAT+
Sbjct: 18 NEFSILRSPGSVVFRNGNWPIPGDRIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATI 77
Query: 349 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 528
MVMVKGVDKLALP GSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 78 MVMVKGVDKLALPAGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 137
Query: 529 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 708
VGKANSVFEDLSVTLRQLR+RLFQE EVDLLFLSELQVLHDISSL
Sbjct: 138 VGKANSVFEDLSVTLRQLRNRLFQENSLLNSLPLNSLSRNNEVDLLFLSELQVLHDISSL 197
Query: 709 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 888
LSRHKHLAKDHSPDLYSLELAGLDE+GKRYGEDSEQFRDASKILVDALQKFADDMY+LYG
Sbjct: 198 LSRHKHLAKDHSPDLYSLELAGLDELGKRYGEDSEQFRDASKILVDALQKFADDMYSLYG 257
Query: 889 GNAVVELVTVRSFDTSLVKKTRTILEAKQVKDPPSPYNLAYKYNGDYPVVFHMILWDMIA 1068
GNAVVELVTV+SFDTSLV+K+RTILEAKQ ++ SPYNLAYKYN +Y VVF+++LW MI
Sbjct: 258 GNAVVELVTVKSFDTSLVRKSRTILEAKQ-ENTQSPYNLAYKYNLEYSVVFNLVLWIMIG 316
Query: 1069 LA 1074
LA
Sbjct: 317 LA 318
Score = 23.5 bits (49), Expect(2) = e-145
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 1094 FXIWDMDPGY 1123
+ IW+MDPGY
Sbjct: 326 YNIWNMDPGY 335
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,254,640
Number of extensions: 965130
Number of successful extensions: 3036
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3033
Number of HSP's successfully gapped: 2
Length of query: 375
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 272
Effective length of database: 12,523,851
Effective search space: 3406487472
Effective search space used: 3406487472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002375
(1125 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135070.1| PREDICTED: renin receptor-like [Sus scrofa]. 548 e-156
Alignment gi|XP_003360317.1| PREDICTED: hypothetical protein LOC100627392... 316 2e-86
Alignment gi|XP_003360905.1| PREDICTED: renin receptor-like, partial [Sus... 300 7e-82
>ref|XP_003135070.1| PREDICTED: renin receptor-like [Sus scrofa].
Length = 351
Score = 548 bits (1413), Expect(2) = e-156
Identities = 282/302 (93%), Positives = 284/302 (94%)
Frame = +1
Query: 169 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 348
NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 18 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 77
Query: 349 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 528
MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 78 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 137
Query: 529 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 708
VGKANSVFEDLSVTLRQLRSRLFQE EVDLLFLSELQVLHDISSL
Sbjct: 138 VGKANSVFEDLSVTLRQLRSRLFQENSILSLLPLNSLSRNNEVDLLFLSELQVLHDISSL 197
Query: 709 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 888
LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG
Sbjct: 198 LSRHKHLAKDHSPDLYSLELAGLDEIGKRYGEDSEQFRDASKILVDALQKFADDMYNLYG 257
Query: 889 GNAVVELVTVRSFDTSLVKKTRTILEAKQVKDPPSPYNLAYKYNGDYPVVFHMILWDMIA 1068
GNAVVELVTVRSFDTSLV+KTRTILEAKQVKDPPSPYNLAYKYN DYPVVF+MILW MIA
Sbjct: 258 GNAVVELVTVRSFDTSLVRKTRTILEAKQVKDPPSPYNLAYKYNVDYPVVFNMILWIMIA 317
Query: 1069 LA 1074
LA
Sbjct: 318 LA 319
Score = 23.5 bits (49), Expect(2) = e-156
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 1094 FXIWDMDPGY 1123
+ IW+MDPGY
Sbjct: 327 YNIWNMDPGY 336
>ref|XP_003360317.1| PREDICTED: hypothetical protein LOC100627392 [Sus scrofa].
Length = 515
Score = 316 bits (809), Expect = 2e-86
Identities = 164/181 (90%), Positives = 165/181 (91%)
Frame = +1
Query: 169 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 348
NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 295 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 354
Query: 349 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 528
MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 355 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 414
Query: 529 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 708
VGKANSVFEDLSVTLRQLRSRLFQE EVDLLFLSELQVLHDISSL
Sbjct: 415 VGKANSVFEDLSVTLRQLRSRLFQENSILSLLPLNSLSRNNEVDLLFLSELQVLHDISSL 474
Query: 709 L 711
+
Sbjct: 475 V 475
>ref|XP_003360905.1| PREDICTED: renin receptor-like, partial [Sus scrofa].
Length = 279
Score = 300 bits (769), Expect = 7e-82
Identities = 157/180 (87%), Positives = 157/180 (87%)
Frame = +1
Query: 169 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 348
NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV
Sbjct: 100 NEFSILRSPGSVVFRDGNWPIPGERIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATV 159
Query: 349 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 528
MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM
Sbjct: 160 MVMVKGVDKLALPPGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYM 219
Query: 529 VGKANSVFEDLSVTLRQLRSRLFQEXXXXXXXXXXXXXXXXEVDLLFLSELQVLHDISSL 708
VGKANSVFEDLSVT LFQE EVDLLFLSELQVLHDISSL
Sbjct: 220 VGKANSVFEDLSVTXXXXXXXLFQENSILSLLPLNSLSRNNEVDLLFLSELQVLHDISSL 279
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,294,826
Number of extensions: 705788
Number of successful extensions: 2206
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2203
Number of HSP's successfully gapped: 4
Length of query: 375
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 274
Effective length of database: 8,829,335
Effective search space: 2419237790
Effective search space used: 2419237790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002375
(1125 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 317 7e-84
gb|GL893021.2| Sus scrofa unplaced genomic scaffold ChrUScaf906 264 9e-68
>Sscrofa_ChrX
|| Length = 144288218
Score = 317 bits (160), Expect = 7e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1 ctcaaggagtcggggcgagctagagctcgtcaccccctcgtgctgtggtggtcgctcgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40369369 ctcaaggagtcggggcgagctagagctcgtcaccccctcgtgctgtggtggtcgctcgcg 40369428
Query: 61 ttccgccggcccgttcgtgtgtgtgttgtcctgcacagctgcggccgccgcggaaccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40369429 ttccgccggcccgttcgtgtgtgtgttgtcctgcacagctgcggccgccgcggaaccatg 40369488
Query: 121 gctgtgctcgtcgccctcttgtccttggtggtggcgggtg 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40369489 gctgtgctcgtcgccctcttgtccttggtggtggcgggtg 40369528
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 708 gttgtctcgacacaagcatctagccaaggatcattctcctgatttatactcactggagct 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40393399 gttgtctcgacacaagcatctagccaaggatcattctcctgatttatactcactggagct 40393458
Query: 768 ggcaggtttggatgaaattgggaaacgttacggggaagactctgaacaatttagagatgc 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40393459 ggcaggtttggatgaaattgggaaacgttacggggaagactctgaacaatttagagatgc 40393518
Query: 828 ttctaagatccttgtcgatgctctgcaaaag 858
|||||||||||||||||||||||||||||||
Sbjct: 40393519 ttctaagatccttgtcgatgctctgcaaaag 40393549
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 517 agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaacacttaga 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40383677 agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaacacttaga 40383736
Query: 577 caactccgcagtcgactgtttcaagaaaactctattctcagtttacttcccctcaattct 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40383737 caactccgcagtcgactgtttcaagaaaactctattctcagtttacttcccctcaattct 40383796
Query: 637 ctgagtaggaacaatgaagt 656
||||||||||||||||||||
Sbjct: 40383797 ctgagtaggaacaatgaagt 40383816
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 157 ggtgtcttagggaatgagtttagcatattaagatcaccagggtctgttgttttccgggat 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40375708 ggtgtcttagggaatgagtttagcatattaagatcaccagggtctgttgttttccgggat 40375767
Query: 217 ggaaattggcctataccaggagagcgaatcccagacgtggctgcattatccatgggcttc 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40375768 ggaaattggcctataccaggagagcgaatcccagacgtggctgcattatccatgggcttc 40375827
Query: 277 tctgtcaaagaag 289
|||||||||||||
Sbjct: 40375828 tctgtcaaagaag 40375840
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 289 gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40377982 gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 40378041
Query: 349 atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcatac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40378042 atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcatac 40378101
Query: 409 cctttggagaatg 421
|||||||||||||
Sbjct: 40378102 cctttggagaatg 40378114
Score = 226 bits (114), Expect = 2e-56
Identities = 120/122 (98%)
Strand = Plus / Plus
Query: 857 agtttgcagatgacatgtacaatctttatggtgggaatgcagtggtcgagttagtgacgg 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40394047 agtttgcagatgacatgtacaatctttatggtgggaatgcagtggtcgagttagtgacgg 40394106
Query: 917 tcaggtcattcgacacatcccttgtgaagaagaccaggactatccttgaggcaaaacaag 976
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 40394107 tcaggtcattcgacacatcccttgtgaggaagacaaggactatccttgaggcaaaacaag 40394166
Query: 977 tg 978
||
Sbjct: 40394167 tg 40394168
Score = 204 bits (103), Expect = 8e-50
Identities = 140/150 (93%), Gaps = 2/150 (1%)
Strand = Plus / Plus
Query: 978 gaaggacccaccaagtccctataaccttgcatacaagtataatggtgactatccagtggt 1037
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 40397373 gaaggacccaccaagtccctataaccttgcatacaagtataatgttgactatccagtggt 40397432
Query: 1038 ttttcacatgatactttgggatatgattgccttgg-cttggctgtgataatcacctctt- 1095
||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 40397433 tttcaacatgatactttggataatgattgccttggccttggctgtgataatcacctctta 40397492
Query: 1096 cnatatttgggacatggatcctggatatga 1125
| |||||||| |||||||||||||||||||
Sbjct: 40397493 caatatttggaacatggatcctggatatga 40397522
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 421 gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40383425 gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 40383484
Query: 481 actcctgtggttttgcagttggcacccagtgaggaa 516
||||||||||||||||||||||||||||||||||||
Sbjct: 40383485 actcctgtggttttgcagttggcacccagtgaggaa 40383520
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 655 gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40384961 gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 40385014
>gb|GL893021.2| Sus scrofa unplaced genomic scaffold ChrUScaf906
Length = 62095
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 289 gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53794 gacctttcttggccgggccttgcagtgggtaacctgttccaccgtcctcgggctaccgtg 53853
Query: 349 atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcatac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53854 atggtgatggtgaagggagtggacaagctcgctctacccccaggcagcgtcatttcatac 53913
Query: 409 cctttggagaatg 421
|||||||||||||
Sbjct: 53914 cctttggagaatg 53926
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 421 gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59101 gcagttccttttagtcttgacagcgttgcaaattccattcactccttattttctgaagaa 59160
Query: 481 actcctgtggttttgcagttggcacccagtgaggaa 516
||||||||||||||||||||||||||||||||||||
Sbjct: 59161 actcctgtggttttgcagttggcacccagtgaggaa 59196
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 591 actgtttcaagaaaactctattctcagtttacttcccctcaattctctgagtaggaacaa 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59506 actgtttcaagaaaactctattctcagtttacttcccctcaattctctgagtaggaacaa 59565
Query: 651 tgaagt 656
||||||
Sbjct: 59566 tgaagt 59571
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 655 gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60569 gtcgacctgctctttctttctgaactgcaggtgctacatgatatttcaagtttg 60622
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 517 agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaac 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59353 agagtgtacatggtgggaaaggcaaactcggtttttgaagatctttcggtaac 59405
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,010,355
Number of extensions: 172
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 14
Length of query: 1125
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1104
Effective length of database: 2,808,413,156
Effective search space: 3100488124224
Effective search space used: 3100488124224
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)