Animal-Genome cDNA 20110601C-002378


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002378
         (625 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001071522.1| interferon induced transmembrane protein 2 (...   165   2e-41
Alignment   gi|NP_001071610.1| interferon-induced transmembrane protein 1 (...   162   3e-40
Alignment   gi|NP_863657.1| interferon-induced transmembrane protein 3 (1-8...   150   8e-37
Alignment   gi|NP_001071609.1| interferon induced transmembrane family memb...   150   8e-37
Alignment   gi|XP_001253014.1| PREDICTED: interferon-induced transmembrane ...   150   8e-37
Alignment   gi|XP_002697369.1| PREDICTED: interferon induced transmembrane ...   142   2e-34
Alignment   gi|XP_598998.1| PREDICTED: interferon induced transmembrane pro...   142   2e-34
Alignment   gi|XP_869835.2| PREDICTED: interferon induced transmembrane pro...   117   6e-27
Alignment   gi|XP_002707847.1| PREDICTED: inteferon-induced membrane protei...   113   1e-25
Alignment   gi|XP_002684045.1| PREDICTED: interferon-induced transmembrane ...   105   3e-23

>ref|NP_001071522.1| interferon induced transmembrane protein 2 (1-8D) [Bos taurus].
          Length = 124

 Score =  165 bits (418), Expect = 2e-41
 Identities = 80/124 (64%), Positives = 91/124 (73%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           M+K ++E+  LGAPQ+ APV TTVI IPRE SVPDHIVWSLFNT+FLNWCCLGFVAFAYS
Sbjct: 1   MLKEENEVAVLGAPQSQAPVTTTVINIPRENSVPDHIVWSLFNTVFLNWCCLGFVAFAYS 60

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKN 456
           VK+RDRKMVGDI GAQSYASTAKCLNIW                 FVY+ AY+   R   
Sbjct: 61  VKSRDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGSIVLLIFVYMAAYETALRISR 120

Query: 457 NRGY 468
           + G+
Sbjct: 121 HGGH 124


>ref|NP_001071610.1| interferon-induced transmembrane protein 1 (9-27) isoform 1 [Bos
           taurus].
          Length = 124

 Score =  162 bits (409), Expect = 3e-40
 Identities = 78/124 (62%), Positives = 90/124 (72%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           MIK +HE+  LGAPQ+ AP+ TTVI I  +T+VPDHIVWSLFNT+FLNWCCLGFVAFAYS
Sbjct: 1   MIKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVWSLFNTIFLNWCCLGFVAFAYS 60

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKN 456
           VK+RDRKMVGDI GAQSYASTAKCLNIW                 FVY+ AY+   R   
Sbjct: 61  VKSRDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGSIVLLIFVYMAAYETALRISR 120

Query: 457 NRGY 468
           + G+
Sbjct: 121 HGGH 124


>ref|NP_863657.1| interferon-induced transmembrane protein 3 (1-8U) [Bos taurus].
          Length = 146

 Score =  150 bits (379), Expect = 8e-37
 Identities = 69/93 (74%), Positives = 81/93 (87%)
 Frame = +1

Query: 79  LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
           +P   E++K +HE+  LGAPQ+ AP+ TTVI I  +T+VPDHIVWSLFNT+F+NWCCLGF
Sbjct: 16  VPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVWSLFNTIFMNWCCLGF 75

Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
           VAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI
Sbjct: 76  VAFAYSVKSRDRKMVGDITGAQSYASTAKCLNI 108


>ref|NP_001071609.1| interferon induced transmembrane family member [Bos taurus].
          Length = 146

 Score =  150 bits (379), Expect = 8e-37
 Identities = 69/93 (74%), Positives = 81/93 (87%)
 Frame = +1

Query: 79  LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
           +P   E++K +HE+  LGAPQ+ AP+ TTVI I  +T+VPDHIVWSLFNT+F+NWCCLGF
Sbjct: 16  VPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVWSLFNTIFMNWCCLGF 75

Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
           VAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI
Sbjct: 76  VAFAYSVKSRDRKMVGDITGAQSYASTAKCLNI 108


>ref|XP_001253014.1| PREDICTED: interferon-induced transmembrane protein 3 (1-8U)-like
           [Bos taurus].
          Length = 146

 Score =  150 bits (379), Expect = 8e-37
 Identities = 69/93 (74%), Positives = 81/93 (87%)
 Frame = +1

Query: 79  LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
           +P   E++K +HE+  LGAPQ+ AP+ TTVI I  +T+VPDHIVWSLFNT+F+NWCCLGF
Sbjct: 16  VPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVWSLFNTIFMNWCCLGF 75

Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
           VAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI
Sbjct: 76  VAFAYSVKSRDRKMVGDITGAQSYASTAKCLNI 108


>ref|XP_002697369.1| PREDICTED: interferon induced transmembrane protein 3-like [Bos
           taurus].
          Length = 145

 Score =  142 bits (359), Expect = 2e-34
 Identities = 66/93 (70%), Positives = 77/93 (82%)
 Frame = +1

Query: 79  LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
           +P   E++K +HE+  LG PQ+ APV TTVI I  ETSVP+HIVW LFNT+F+NWCCLGF
Sbjct: 16  VPPAYEVLKEEHEVAVLGVPQSQAPVTTTVINICSETSVPNHIVWFLFNTIFMNWCCLGF 75

Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
           VAFAYSV++RDRKMVGDI GAQ Y STAKCLNI
Sbjct: 76  VAFAYSVESRDRKMVGDITGAQRYTSTAKCLNI 108


>ref|XP_598998.1| PREDICTED: interferon induced transmembrane protein 3-like [Bos
           taurus].
          Length = 145

 Score =  142 bits (359), Expect = 2e-34
 Identities = 66/93 (70%), Positives = 77/93 (82%)
 Frame = +1

Query: 79  LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
           +P   E++K +HE+  LG PQ+ APV TTVI I  ETSVP+HIVW LFNT+F+NWCCLGF
Sbjct: 16  VPPAYEVLKEEHEVAVLGVPQSQAPVTTTVINICSETSVPNHIVWFLFNTIFMNWCCLGF 75

Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
           VAFAYSV++RDRKMVGDI GAQ Y STAKCLNI
Sbjct: 76  VAFAYSVESRDRKMVGDITGAQRYTSTAKCLNI 108


>ref|XP_869835.2| PREDICTED: interferon induced transmembrane protein 2 (1-8D)-like
           [Bos taurus].
          Length = 238

 Score =  117 bits (294), Expect = 6e-27
 Identities = 55/88 (62%), Positives = 66/88 (75%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           M   + E+  +G P  SAP+   VI I  E    DHIVWSLFNTLF+N CCLGFVAF YS
Sbjct: 1   MFSGEQEVAVMGGPAGSAPMKNAVINIQTENPGRDHIVWSLFNTLFMNICCLGFVAFDYS 60

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIW 360
           V+++D+KMVGDI GAQS+ASTAKCLN+W
Sbjct: 61  VESKDQKMVGDITGAQSHASTAKCLNVW 88


>ref|XP_002707847.1| PREDICTED: inteferon-induced membrane protein Leu-13/9-27-like [Bos
           taurus].
          Length = 214

 Score =  113 bits (283), Expect = 1e-25
 Identities = 54/88 (61%), Positives = 64/88 (72%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           M   + E+   G  Q   P+   VI I  E    DHIVWSLFNTLF+N CCLGFVAFAYS
Sbjct: 1   MFSGEQEVAVTGDLQARXPMKNAVINIQTENPGRDHIVWSLFNTLFMNICCLGFVAFAYS 60

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIW 360
           V+++D+KMVGDI GAQS+ASTAKCLN+W
Sbjct: 61  VESKDQKMVGDITGAQSHASTAKCLNVW 88


>ref|XP_002684045.1| PREDICTED: interferon-induced transmembrane protein 3 (1-8U)-like
           [Bos taurus].
          Length = 96

 Score =  105 bits (262), Expect = 3e-23
 Identities = 46/68 (67%), Positives = 57/68 (83%)
 Frame = +1

Query: 79  LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
           +P   E++K +HE+  LGAPQ+ AP+ TTVI I  +T+VPDHIVWSLFNT+F+NWCCLGF
Sbjct: 16  VPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVWSLFNTIFMNWCCLGF 75

Query: 259 VAFAYSVK 282
           VAFAYSVK
Sbjct: 76  VAFAYSVK 83


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 22,187,488
Number of extensions: 654099
Number of successful extensions: 3659
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3593
Number of HSP's successfully gapped: 15
Length of query: 208
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 110
Effective length of database: 14,438,750
Effective search space: 1588262500
Effective search space used: 1588262500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002378
         (625 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_533144.2| PREDICTED: similar to Interferon-induced transm...   140   9e-34
Alignment   gi|XP_540516.1| PREDICTED: similar to Interferon-induced transm...   134   7e-32
Alignment   gi|XP_540515.2| PREDICTED: similar to Interferon-induced transm...   129   2e-30
Alignment   gi|XP_848464.1| PREDICTED: similar to IFITM5 [Canis familiaris].      99   4e-21
Alignment   gi|XP_854310.1| PREDICTED: similar to Interferon-inducible prot...    78   6e-15
Alignment   gi|XP_848556.1| PREDICTED: similar to interferon induced transm...    74   8e-14
Alignment   gi|XP_536539.2| PREDICTED: similar to olfactory receptor 973 [C...    74   1e-13

>ref|XP_533144.2| PREDICTED: similar to Interferon-induced transmembrane protein 3
           (Interferon-inducible protein 1-8U) [Canis familiaris].
          Length = 219

 Score =  140 bits (353), Expect = 9e-34
 Identities = 68/119 (57%), Positives = 80/119 (67%)
 Frame = +1

Query: 109 QHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYSVKAR 288
           Q+++D  GAP ++AP  TTVI +P ET VPDH+VWSLFNT+FLNW CLGFVAF YSVKAR
Sbjct: 98  QNKVDVRGAPLSTAPATTTVINVPVETVVPDHVVWSLFNTIFLNWFCLGFVAFVYSVKAR 157

Query: 289 DRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKNNRG 465
           DRKMVGD+ GAQS+ASTA+CLNIW                   Y  AY  L +A    G
Sbjct: 158 DRKMVGDLTGAQSFASTARCLNIWALVLGLLLTIISIVLLGMAYAAAYGALLQAMQESG 216


>ref|XP_540516.1| PREDICTED: similar to Interferon-induced transmembrane protein 1
           (Interferon-induced protein 17) (Interferon-inducible
           protein 9-27) (Leu-13 antigen) (CD225 antigen) [Canis
           familiaris].
          Length = 126

 Score =  134 bits (337), Expect = 7e-32
 Identities = 62/87 (71%), Positives = 73/87 (83%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           M + Q+++   GAPQ+  PV TTVI I  +T VPDHIVWSLFNT+F+NWCCLG VAFAYS
Sbjct: 1   MDQDQYKVPETGAPQSMVPVTTTVINIRSDTVVPDHIVWSLFNTVFMNWCCLGIVAFAYS 60

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNI 357
           VKARDRKMVGD+ GAQS+ASTA+CLNI
Sbjct: 61  VKARDRKMVGDLTGAQSFASTARCLNI 87


>ref|XP_540515.2| PREDICTED: similar to Interferon-induced transmembrane protein 3
           (Interferon-inducible protein 1-8U) [Canis familiaris].
          Length = 165

 Score =  129 bits (325), Expect = 2e-30
 Identities = 60/84 (71%), Positives = 71/84 (84%)
 Frame = +1

Query: 109 QHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYSVKAR 288
           Q+++D  GA  ++AP  TTVI +P ET VPDH+VWSLFNT+FLN  CLGFVAF YSVKAR
Sbjct: 48  QNKVDVRGALLSTAPATTTVINVPEETVVPDHVVWSLFNTIFLNSFCLGFVAFVYSVKAR 107

Query: 289 DRKMVGDIIGAQSYASTAKCLNIW 360
           DRKMVGD+ GAQS+ASTA+CLNIW
Sbjct: 108 DRKMVGDLTGAQSFASTARCLNIW 131


>ref|XP_848464.1| PREDICTED: similar to IFITM5 [Canis familiaris].
          Length = 136

 Score = 98.6 bits (244), Expect = 4e-21
 Identities = 48/92 (52%), Positives = 60/92 (65%)
 Frame = +1

Query: 82  PLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFV 261
           P T EM+K +HE+  LG+                   VPDH+VWSLFNT+F+NWCCLGFV
Sbjct: 17  PPTYEMLKEEHEVVVLGSGL-----------------VPDHVVWSLFNTVFMNWCCLGFV 59

Query: 262 AFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
           AFAYS KARD+K+ GD+  A+ + S AKC NI
Sbjct: 60  AFAYSEKARDQKVAGDLEAARRFGSKAKCYNI 91


>ref|XP_854310.1| PREDICTED: similar to Interferon-inducible protein [Canis
           familiaris].
          Length = 274

 Score = 78.2 bits (191), Expect = 6e-15
 Identities = 46/118 (38%), Positives = 67/118 (56%), Gaps = 10/118 (8%)
 Frame = +1

Query: 34  AAPSLHQETLLKASPLPLTLEMIKSQHE-MDGLGAPQTSAPVA--------TTVITI-PR 183
           AAP+         +P    +E   S+ + +   GAPQ    +A        TTVI + P 
Sbjct: 133 AAPAPEPSASPPMAPTLFPMESKSSKTDSVRASGAPQACKHLAEKKTMTNPTTVIEVYPD 192

Query: 184 ETSVPDHIVWSLFNTLFLNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
            T V D+ +WS+FN ++LN+CCLGF+A AYS+K RD+K++ D+ GA   A TA+  NI
Sbjct: 193 TTEVNDYYLWSIFNFVYLNFCCLGFIALAYSLKVRDKKLLNDLNGAVEDAKTARLFNI 250


>ref|XP_848556.1| PREDICTED: similar to interferon induced transmembrane protein 1
           (9-27) [Canis familiaris].
          Length = 79

 Score = 74.3 bits (181), Expect = 8e-14
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = +1

Query: 235 LNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIW 360
           +NWC  GF+AF+YSVK RDRKM GD+ GAQS+ASTA+CLNIW
Sbjct: 1   MNWCGRGFMAFSYSVKTRDRKMAGDLTGAQSFASTARCLNIW 42


>ref|XP_536539.2| PREDICTED: similar to olfactory receptor 973 [Canis familiaris].
          Length = 370

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = +1

Query: 193 VPDHIVWSLFNTLFLNWCCLGFVAFAYSVKARDRKMV 303
           +PDHI WSLFNT+FLNWCCLGF AFAYSVK+R RK+V
Sbjct: 1   MPDHIFWSLFNTIFLNWCCLGFAAFAYSVKSRGRKLV 37


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 22,988,746
Number of extensions: 653479
Number of successful extensions: 3366
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3294
Number of HSP's successfully gapped: 7
Length of query: 208
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 110
Effective length of database: 15,607,576
Effective search space: 1716833360
Effective search space used: 1716833360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002378
         (625 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_003632.3| interferon-induced transmembrane protein 1 [Hom...   146   1e-35
Alignment   gi|NP_066362.2| interferon-induced transmembrane protein 3 [Hom...   144   5e-35
Alignment   gi|NP_006426.2| interferon-induced transmembrane protein 2 [Hom...   140   9e-34
Alignment   gi|NP_001020466.1| interferon-induced transmembrane protein 5 [...    85   6e-17
Alignment   gi|NP_001164291.2| interferon-induced transmembrane protein 10 ...    76   2e-14

>ref|NP_003632.3| interferon-induced transmembrane protein 1 [Homo sapiens].
          Length = 125

 Score =  146 bits (369), Expect = 1e-35
 Identities = 73/125 (58%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           M K +HE+  LGAP ++    +TVI I  ETSVPDH+VWSLFNTLFLNWCCLGF+AFAYS
Sbjct: 1   MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS 60

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQ-MLERAK 453
           VK+RDRKMVGD+ GAQ+YASTAKCLNIW                 F  +T Y  ML+  +
Sbjct: 61  VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ 120

Query: 454 NNRGY 468
             RGY
Sbjct: 121 EKRGY 125


>ref|NP_066362.2| interferon-induced transmembrane protein 3 [Homo sapiens].
          Length = 133

 Score =  144 bits (364), Expect = 5e-35
 Identities = 67/93 (72%), Positives = 77/93 (82%)
 Frame = +1

Query: 82  PLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFV 261
           P   EM+K +HE+  LGAP   AP  +TVI I  ETSVPDH+VWSLFNTLF+N CCLGF+
Sbjct: 17  PPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVWSLFNTLFMNPCCLGFI 76

Query: 262 AFAYSVKARDRKMVGDIIGAQSYASTAKCLNIW 360
           AFAYSVK+RDRKMVGD+ GAQ+YASTAKCLNIW
Sbjct: 77  AFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIW 109


>ref|NP_006426.2| interferon-induced transmembrane protein 2 [Homo sapiens].
          Length = 132

 Score =  140 bits (353), Expect = 9e-34
 Identities = 65/93 (69%), Positives = 75/93 (80%)
 Frame = +1

Query: 82  PLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFV 261
           P   EM+K + E+  LG P   AP  +TVI I  ETSVPDH+VWSLFNTLF+N CCLGF+
Sbjct: 16  PPNYEMLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVWSLFNTLFMNTCCLGFI 75

Query: 262 AFAYSVKARDRKMVGDIIGAQSYASTAKCLNIW 360
           AFAYSVK+RDRKMVGD+ GAQ+YASTAKCLNIW
Sbjct: 76  AFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIW 108


>ref|NP_001020466.1| interferon-induced transmembrane protein 5 [Homo sapiens].
          Length = 132

 Score = 84.7 bits (208), Expect = 6e-17
 Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
 Frame = +1

Query: 133 APQTSAPVATTVITIPRETSVP-DHIVWSLFNTLFLNWCCLGFVAFAYSVKARDRKMVGD 309
           AP  S   A T +T+      P DH++WS+F+TL+LN CCLGF+A AYS+KARD+K+VGD
Sbjct: 12  APTPSKAGAHTALTLGAPHPPPRDHLIWSVFSTLYLNLCCLGFLALAYSIKARDQKVVGD 71

Query: 310 IIGAQSYASTAKCLNI 357
           +  A+ + S AKC NI
Sbjct: 72  LEAARRFGSKAKCYNI 87


>ref|NP_001164291.2| interferon-induced transmembrane protein 10 [Homo sapiens].
          Length = 228

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
 Frame = +1

Query: 160 TTVITI-PRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYAS 336
           TTVI + P  T V D+ +WS+FN ++LN+CCLGF+A AYS+K RD+K++ D+ GA   A 
Sbjct: 138 TTVIEVYPDTTEVNDYYLWSIFNFVYLNFCCLGFIALAYSLKVRDKKLLNDLNGAVEDAK 197

Query: 337 TAKCLNI 357
           TA+  NI
Sbjct: 198 TARLFNI 204


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 22,567,967
Number of extensions: 643623
Number of successful extensions: 3528
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3472
Number of HSP's successfully gapped: 5
Length of query: 208
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 110
Effective length of database: 15,066,692
Effective search space: 1657336120
Effective search space used: 1657336120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002378
         (625 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_079654.1| interferon-induced transmembrane protein 3 [Mus...   142   3e-34
Alignment   gi|XP_910503.1| PREDICTED: interferon-induced transmembrane pro...   140   6e-34
Alignment   gi|NP_109619.1| interferon-induced transmembrane protein 2 [Mus...   140   8e-34
Alignment   gi|NP_083244.1| interferon induced transmembrane protein 7 [Mus...   125   2e-29
Alignment   gi|XP_357752.4| PREDICTED: interferon-induced transmembrane pro...   125   3e-29
Alignment   gi|XP_920076.2| PREDICTED: interferon-induced transmembrane pro...   125   3e-29
Alignment   gi|NP_001106186.1| interferon-induced transmembrane protein 1 [...   120   6e-28
Alignment   gi|NP_081096.3| interferon-induced transmembrane protein 1 [Mus...   120   6e-28
Alignment   gi|NP_001028804.1| interferon induced transmembrane protein 6 [...   104   5e-23
Alignment   gi|NP_444318.1| interferon-induced transmembrane protein 5 [Mus...    76   2e-14

>ref|NP_079654.1| interferon-induced transmembrane protein 3 [Mus musculus].
          Length = 137

 Score =  142 bits (357), Expect = 3e-34
 Identities = 65/92 (70%), Positives = 78/92 (84%)
 Frame = +1

Query: 82  PLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFV 261
           P   E IK ++E+  +GAP  SA V TTVI +PRE SVPDH+VWSLFNTLF+N+CCLGF+
Sbjct: 17  PPNYERIKEEYEVAEMGAPHGSASVRTTVINMPREVSVPDHVVWSLFNTLFMNFCCLGFI 76

Query: 262 AFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
           A+AYSVK+RDRKMVGD+ GAQ+YASTAKCLNI
Sbjct: 77  AYAYSVKSRDRKMVGDVTGAQAYASTAKCLNI 108


>ref|XP_910503.1| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
           musculus].
          Length = 144

 Score =  140 bits (354), Expect = 6e-34
 Identities = 65/93 (69%), Positives = 77/93 (82%)
 Frame = +1

Query: 79  LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
           LP + E IK ++ +  LG P  SA V TTVI +PRE SVPDH+VWSLFNTLF N CCLGF
Sbjct: 15  LPPSYETIKEEYRVTELGEPSNSAVVRTTVINMPREVSVPDHVVWSLFNTLFFNACCLGF 74

Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
           +A+AYSVK+RDRKMVGD++GAQ+YASTAKCLNI
Sbjct: 75  IAYAYSVKSRDRKMVGDVVGAQAYASTAKCLNI 107


>ref|NP_109619.1| interferon-induced transmembrane protein 2 [Mus musculus].
          Length = 144

 Score =  140 bits (353), Expect = 8e-34
 Identities = 66/93 (70%), Positives = 77/93 (82%)
 Frame = +1

Query: 79  LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
           LP + E IK ++ +  LG P  SA V TTVI +PRE SVPDH+VWSLFNTLF N CCLGF
Sbjct: 15  LPPSYETIKEEYGVTELGEPSNSAVVRTTVINMPREVSVPDHVVWSLFNTLFFNACCLGF 74

Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
           VA+AYSVK+RDRKMVGD++GAQ+YASTAKCLNI
Sbjct: 75  VAYAYSVKSRDRKMVGDVVGAQAYASTAKCLNI 107


>ref|NP_083244.1| interferon induced transmembrane protein 7 [Mus musculus].
          Length = 107

 Score =  125 bits (314), Expect = 2e-29
 Identities = 58/87 (66%), Positives = 73/87 (83%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           M K QHE+  +G P TS    TT+IT+P E S PD++VWSLFNTLF+N+CCLGF+A+AYS
Sbjct: 1   MPKDQHEVVVMGTPHTSTSSTTTIITMP-EISKPDYVVWSLFNTLFMNFCCLGFIAYAYS 59

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNI 357
           VK+RDRKMVGD+ GAQ++ASTA+CLNI
Sbjct: 60  VKSRDRKMVGDMTGAQAFASTARCLNI 86


>ref|XP_357752.4| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
           musculus].
          Length = 211

 Score =  125 bits (313), Expect = 3e-29
 Identities = 61/93 (65%), Positives = 72/93 (77%)
 Frame = +1

Query: 79  LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
           LP + E IK ++ +  LG P  SA V TTVI +PRE SVPDH+ WSLF+TLF N CCLGF
Sbjct: 15  LPPSYETIKEEYGVTELGEPNNSAAVRTTVINMPREVSVPDHVAWSLFSTLFFNACCLGF 74

Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
            A+AYS   RDRKMVGD+IGAQ++ASTAKCLNI
Sbjct: 75  AAYAYS---RDRKMVGDVIGAQAHASTAKCLNI 104


>ref|XP_920076.2| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
           musculus].
          Length = 211

 Score =  125 bits (313), Expect = 3e-29
 Identities = 61/93 (65%), Positives = 72/93 (77%)
 Frame = +1

Query: 79  LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
           LP + E IK ++ +  LG P  SA V TTVI +PRE SVPDH+ WSLF+TLF N CCLGF
Sbjct: 15  LPPSYETIKEEYGVTELGEPNNSAAVRTTVINMPREVSVPDHVAWSLFSTLFFNACCLGF 74

Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
            A+AYS   RDRKMVGD+IGAQ++ASTAKCLNI
Sbjct: 75  AAYAYS---RDRKMVGDVIGAQAHASTAKCLNI 104


>ref|NP_001106186.1| interferon-induced transmembrane protein 1 [Mus musculus].
          Length = 106

 Score =  120 bits (302), Expect = 6e-28
 Identities = 58/87 (66%), Positives = 68/87 (78%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           M K Q E+  LG+P  S     T I +P E S PDH+VWSLFNTLF+N+CCLGFVA+AYS
Sbjct: 1   MPKEQQEVVVLGSPHISTSATATTINMP-EISTPDHVVWSLFNTLFMNFCCLGFVAYAYS 59

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNI 357
           VK+RDRKMVGD  GAQ++ASTAKCLNI
Sbjct: 60  VKSRDRKMVGDTTGAQAFASTAKCLNI 86


>ref|NP_081096.3| interferon-induced transmembrane protein 1 [Mus musculus].
          Length = 106

 Score =  120 bits (302), Expect = 6e-28
 Identities = 58/87 (66%), Positives = 68/87 (78%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           M K Q E+  LG+P  S     T I +P E S PDH+VWSLFNTLF+N+CCLGFVA+AYS
Sbjct: 1   MPKEQQEVVVLGSPHISTSATATTINMP-EISTPDHVVWSLFNTLFMNFCCLGFVAYAYS 59

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNI 357
           VK+RDRKMVGD  GAQ++ASTAKCLNI
Sbjct: 60  VKSRDRKMVGDTTGAQAFASTAKCLNI 86


>ref|NP_001028804.1| interferon induced transmembrane protein 6 [Mus musculus].
          Length = 104

 Score =  104 bits (260), Expect = 5e-23
 Identities = 48/71 (67%), Positives = 58/71 (81%)
 Frame = +1

Query: 145 SAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYSVKARDRKMVGDIIGAQ 324
           SAPV +TV+ I  +   PDHI WS FNT+F+N CCLGF+A+ YSVK+RDRKMVGD+ GAQ
Sbjct: 8   SAPVPSTVVCINSDVIQPDHITWSTFNTVFMNGCCLGFIAYIYSVKSRDRKMVGDMTGAQ 67

Query: 325 SYASTAKCLNI 357
           S+ASTAK LNI
Sbjct: 68  SHASTAKILNI 78


>ref|NP_444318.1| interferon-induced transmembrane protein 5 [Mus musculus].
          Length = 134

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 31/53 (58%), Positives = 43/53 (81%)
 Frame = +1

Query: 199 DHIVWSLFNTLFLNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
           DH++WS+F+T++LN CCLGF+A  +SVKARD+KM G++  A+ Y S AKC NI
Sbjct: 37  DHMLWSVFSTMYLNLCCLGFLALVHSVKARDQKMAGNLEAARQYGSKAKCYNI 89


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 19,072,167
Number of extensions: 532498
Number of successful extensions: 2903
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2843
Number of HSP's successfully gapped: 11
Length of query: 208
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 111
Effective length of database: 12,704,067
Effective search space: 1410151437
Effective search space used: 1410151437
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002378
         (625 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003124278.1| PREDICTED: interferon-induced transmembrane ...   213   9e-56
Alignment   gi|XP_003124283.1| PREDICTED: interferon-induced transmembrane ...   187   3e-48
Alignment   gi|XP_003354459.1| PREDICTED: interferon-induced transmembrane ...   174   4e-44
Alignment   gi|XP_003354458.1| PREDICTED: interferon-induced transmembrane ...   174   4e-44
Alignment   gi|XP_003354457.1| PREDICTED: interferon-induced transmembrane ...   174   4e-44
Alignment   gi|XP_003354456.1| PREDICTED: interferon-induced transmembrane ...   174   4e-44
Alignment   gi|XP_003354463.1| PREDICTED: interferon-induced transmembrane ...   172   2e-43
Alignment   gi|NP_001188311.1| interferon-induced transmembrane protein 3 [...   169   1e-42
Alignment   gi|XP_003353695.1| PREDICTED: interferon-induced transmembrane ...   160   5e-40
Alignment   gi|XP_003354469.1| PREDICTED: interferon-induced transmembrane ...   132   1e-31

>ref|XP_003124278.1| PREDICTED: interferon-induced transmembrane protein 1 [Sus scrofa].
          Length = 124

 Score =  213 bits (541), Expect = 9e-56
 Identities = 105/124 (84%), Positives = 106/124 (85%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS
Sbjct: 1   MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 60

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKN 456
           VKARDRKMVGDIIGAQSYASTAKCLNIW                 FVYITAY MLERAK+
Sbjct: 61  VKARDRKMVGDIIGAQSYASTAKCLNIWALILGLILTIGATVLLVFVYITAYHMLERAKS 120

Query: 457 NRGY 468
           NRGY
Sbjct: 121 NRGY 124


>ref|XP_003124283.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
           scrofa].
          Length = 124

 Score =  187 bits (476), Expect = 3e-48
 Identities = 91/124 (73%), Positives = 98/124 (79%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           M++ +HE+  LGAPQTSAPVATTVI I  ETSVPDH+VWSLFN LF+NWCCLGFVAFAYS
Sbjct: 1   MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKN 456
           VKARDRKMVGDIIGAQSYASTAKCLNIW                 F YITAY MLERAK+
Sbjct: 61  VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFAYITAYHMLERAKS 120

Query: 457 NRGY 468
           NRGY
Sbjct: 121 NRGY 124


>ref|XP_003354459.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
           4 [Sus scrofa].
          Length = 125

 Score =  174 bits (440), Expect = 4e-44
 Identities = 86/125 (68%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           M++ +HE+  LGAPQTSAPVATTVI I  ETSVPDH+VWSLFN LF+NWCCLGFVAFAYS
Sbjct: 1   MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 453
           VKARDRKMVGDIIGAQSYASTAKCLNIW                 F  I  Y+M L+ AK
Sbjct: 61  VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120

Query: 454 NNRGY 468
           +NRGY
Sbjct: 121 SNRGY 125


>ref|XP_003354458.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
           3 [Sus scrofa].
          Length = 125

 Score =  174 bits (440), Expect = 4e-44
 Identities = 86/125 (68%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           M++ +HE+  LGAPQTSAPVATTVI I  ETSVPDH+VWSLFN LF+NWCCLGFVAFAYS
Sbjct: 1   MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 453
           VKARDRKMVGDIIGAQSYASTAKCLNIW                 F  I  Y+M L+ AK
Sbjct: 61  VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120

Query: 454 NNRGY 468
           +NRGY
Sbjct: 121 SNRGY 125


>ref|XP_003354457.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
           2 [Sus scrofa].
          Length = 125

 Score =  174 bits (440), Expect = 4e-44
 Identities = 86/125 (68%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           M++ +HE+  LGAPQTSAPVATTVI I  ETSVPDH+VWSLFN LF+NWCCLGFVAFAYS
Sbjct: 1   MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 453
           VKARDRKMVGDIIGAQSYASTAKCLNIW                 F  I  Y+M L+ AK
Sbjct: 61  VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120

Query: 454 NNRGY 468
           +NRGY
Sbjct: 121 SNRGY 125


>ref|XP_003354456.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
           1 [Sus scrofa].
          Length = 125

 Score =  174 bits (440), Expect = 4e-44
 Identities = 86/125 (68%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           M++ +HE+  LGAPQTSAPVATTVI I  ETSVPDH+VWSLFN LF+NWCCLGFVAFAYS
Sbjct: 1   MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 453
           VKARDRKMVGDIIGAQSYASTAKCLNIW                 F  I  Y+M L+ AK
Sbjct: 61  VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120

Query: 454 NNRGY 468
           +NRGY
Sbjct: 121 SNRGY 125


>ref|XP_003354463.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
           scrofa].
          Length = 125

 Score =  172 bits (435), Expect = 2e-43
 Identities = 85/125 (68%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           M++ +HE+  LGAPQTSAPVATTVI I  ETSVPDH+VWSLFN LF+NWCCLGFVAFAYS
Sbjct: 1   MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60

Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 453
           VKARDRKMVGDI GAQSYASTAKCLNIW                 F  I  Y+M L+ AK
Sbjct: 61  VKARDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120

Query: 454 NNRGY 468
           +NRGY
Sbjct: 121 SNRGY 125


>ref|NP_001188311.1| interferon-induced transmembrane protein 3 [Sus scrofa].
          Length = 145

 Score =  169 bits (428), Expect = 1e-42
 Identities = 80/93 (86%), Positives = 85/93 (91%)
 Frame = +1

Query: 82  PLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFV 261
           P T EM+K +HE+  LGAPQTSAPVATTVI I  ETSVPDH+VWSLFNTLF+NWCCLGFV
Sbjct: 16  PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFV 75

Query: 262 AFAYSVKARDRKMVGDIIGAQSYASTAKCLNIW 360
           AFAYSVKARDRKMVGDIIGAQSYASTAKCLNIW
Sbjct: 76  AFAYSVKARDRKMVGDIIGAQSYASTAKCLNIW 108


>ref|XP_003353695.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
           scrofa].
          Length = 207

 Score =  160 bits (405), Expect = 5e-40
 Identities = 79/131 (60%), Positives = 94/131 (71%), Gaps = 1/131 (0%)
 Frame = +1

Query: 79  LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
           +P + + +K + E+  +G P+ SAP+ +TVITIPRET   DH+VWSLF+TLFLNWCCLGF
Sbjct: 77  VPHSQDTVKEEQEVAEMGPPEGSAPMTSTVITIPRETPHRDHVVWSLFSTLFLNWCCLGF 136

Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM 438
           VAFAYSVKARDRKMVGDI GAQSYASTAKCLNIW                 F  I  Y+M
Sbjct: 137 VAFAYSVKARDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEM 196

Query: 439 -LERAKNNRGY 468
            L+ AK+NRGY
Sbjct: 197 ALQHAKSNRGY 207


>ref|XP_003354469.1| PREDICTED: interferon-induced transmembrane protein 3-like [Sus
           scrofa].
          Length = 93

 Score =  132 bits (332), Expect = 1e-31
 Identities = 62/62 (100%), Positives = 62/62 (100%)
 Frame = +1

Query: 97  MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
           MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS
Sbjct: 1   MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 60

Query: 277 VK 282
           VK
Sbjct: 61  VK 62


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 14,484,894
Number of extensions: 446974
Number of successful extensions: 2446
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2397
Number of HSP's successfully gapped: 14
Length of query: 208
Length of database: 11,343,932
Length adjustment: 94
Effective length of query: 114
Effective length of database: 9,003,614
Effective search space: 1026411996
Effective search space used: 1026411996
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002378
         (625 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                         551   e-154
Sscrofa_Chr01                                                         194   4e-47

>Sscrofa_Chr02 
||          Length = 162569375

 Score =  551 bits (278), Expect = e-154
 Identities = 278/278 (100%)
 Strand = Plus / Plus

                                                                             
Query: 6         actggggcccttctgacatccagacacagctgctccgtctctgcatcaagaaacacttct 65
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333077 actggggcccttctgacatccagacacagctgctccgtctctgcatcaagaaacacttct 162333136

                                                                             
Query: 66        caaagcatcgcctctgccactgaccctggagatgatcaagagccagcacgagatggacgg 125
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333137 caaagcatcgcctctgccactgaccctggagatgatcaagagccagcacgagatggacgg 162333196

                                                                             
Query: 126       gctgggggctccccagacctcagcccccgtggccaccacggtgatcaccatccccaggga 185
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333197 gctgggggctccccagacctcagcccccgtggccaccacggtgatcaccatccccaggga 162333256

                                                                             
Query: 186       gacctccgtgcccgaccacatcgtctggtccctgttcaacaccctcttcctgaactggtg 245
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333257 gacctccgtgcccgaccacatcgtctggtccctgttcaacaccctcttcctgaactggtg 162333316

                                                       
Query: 246       ctgcctgggcttcgtggctttcgcctactccgtgaagg 283
                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 162333317 ctgcctgggcttcgtggctttcgcctactccgtgaagg 162333354



 Score =  543 bits (274), Expect = e-152
 Identities = 277/278 (99%)
 Strand = Plus / Minus

                                                                             
Query: 6         actggggcccttctgacatccagacacagctgctccgtctctgcatcaagaaacacttct 65
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100377 actggggcccttctgacatccagacacagctgctccgtctctgcatcaagaaacacttct 162100318

                                                                             
Query: 66        caaagcatcgcctctgccactgaccctggagatgatcaagagccagcacgagatggacgg 125
                 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100317 caaagcatctcctctgccactgaccctggagatgatcaagagccagcacgagatggacgg 162100258

                                                                             
Query: 126       gctgggggctccccagacctcagcccccgtggccaccacggtgatcaccatccccaggga 185
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100257 gctgggggctccccagacctcagcccccgtggccaccacggtgatcaccatccccaggga 162100198

                                                                             
Query: 186       gacctccgtgcccgaccacatcgtctggtccctgttcaacaccctcttcctgaactggtg 245
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100197 gacctccgtgcccgaccacatcgtctggtccctgttcaacaccctcttcctgaactggtg 162100138

                                                       
Query: 246       ctgcctgggcttcgtggctttcgcctactccgtgaagg 283
                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 162100137 ctgcctgggcttcgtggctttcgcctactccgtgaagg 162100100



 Score =  359 bits (181), Expect = 1e-96
 Identities = 190/193 (98%)
 Strand = Plus / Minus

                                                                             
Query: 281       aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 340
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162099479 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162099420

                                                                             
Query: 341       ccaagtgcttgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 400
                 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162099419 ccaagtgcctgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 162099360

                                                                             
Query: 401       ttcttctggtgtttgtatacataacagcctaccagatgttagagcgcgcaaagaataaca 460
                 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 162099359 ttcttctggtgtttgtatacataacagcctaccatatgttagagcgcgcaaagagtaaca 162099300

                              
Query: 461       gaggctactagca 473
                 |||||||||||||
Sbjct: 162099299 gaggctactagca 162099287



 Score =  287 bits (145), Expect = 4e-75
 Identities = 181/193 (93%)
 Strand = Plus / Plus

                                                                             
Query: 281       aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 340
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096290 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162096349

                                                                             
Query: 341       ccaagtgcttgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 400
                 |||||||| ||||||||||||||||| |||||||| |  |||||||||||||||||   |
Sbjct: 162096350 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162096409

                                                                             
Query: 401       ttcttctggtgtttgtatacataacagcctaccagatgttagagcgcgcaaagaataaca 460
                  |||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 162096410 ctcttctggtgtttgcatacataacagcctaccatatgttagagcgcgcaaagagtaaca 162096469

                              
Query: 461       gaggctactagca 473
                 |||||||||||||
Sbjct: 162096470 gaggctactagca 162096482



 Score =  274 bits (138), Expect = 5e-71
 Identities = 165/174 (94%)
 Strand = Plus / Minus

                                                                             
Query: 110       agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 169
                 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072434 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 162072375

                                                                             
Query: 170       tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 229
                 ||| |||||  || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 162072374 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacaccc 162072315

                                                                       
Query: 230       tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 283
                 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072314 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162072261



 Score =  274 bits (138), Expect = 5e-71
 Identities = 165/174 (94%)
 Strand = Plus / Plus

                                                                             
Query: 110       agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 169
                 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353246 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 162353305

                                                                             
Query: 170       tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 229
                 ||| |||||  || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 162353306 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacaccc 162353365

                                                                       
Query: 230       tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 283
                 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353366 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162353419



 Score =  266 bits (134), Expect = 1e-68
 Identities = 164/174 (94%)
 Strand = Plus / Minus

                                                                             
Query: 110       agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 169
                 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077802 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 162077743

                                                                             
Query: 170       tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 229
                 ||| |||||  || ||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 162077742 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacgccc 162077683

                                                                       
Query: 230       tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 283
                 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077682 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162077629



 Score =  266 bits (134), Expect = 1e-68
 Identities = 164/174 (94%)
 Strand = Plus / Plus

                                                                             
Query: 110       agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 169
                 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095483 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 162095542

                                                                             
Query: 170       tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 229
                 ||| |||||  || ||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 162095543 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacgccc 162095602

                                                                       
Query: 230       tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 283
                 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095603 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162095656



 Score =  266 bits (134), Expect = 1e-68
 Identities = 140/142 (98%)
 Strand = Plus / Minus

                                                                             
Query: 281       aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 340
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162102703 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162102644

                                                                             
Query: 341       ccaagtgcttgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 400
                 |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 162102643 ccaagtgcctgaacatctgggctctggtcctgggcctcattctgaccatcggagccactg 162102584

                                       
Query: 401       ttcttctggtgtttgtatacat 422
                 ||||||||||||||||||||||
Sbjct: 162102583 ttcttctggtgtttgtatacat 162102562



 Score =  266 bits (134), Expect = 1e-68
 Identities = 164/174 (94%)
 Strand = Plus / Minus

                                                                             
Query: 110       agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 169
                 |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340843 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 162340784

                                                                             
Query: 170       tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 229
                 ||| |||||  || ||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 162340783 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacgccc 162340724

                                                                       
Query: 230       tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 283
                 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340723 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162340670



 Score =  210 bits (106), Expect = 7e-52
 Identities = 174/196 (88%), Gaps = 3/196 (1%)
 Strand = Plus / Minus

                                                                             
Query: 281       aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 340
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162076993 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162076934

                                                                             
Query: 341       ccaagtgcttgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 400
                 |||||||| ||||||||||||||||| |||||||| |  |||||||||||||||||   |
Sbjct: 162076933 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162076874

                                                                             
Query: 401       ttcttctggtgtttgtatacataacagcctaccagatg---ttagagcgcgcaaagaata 457
                  |||||||||||||| || |||| ||| |||| |||||   ||| | |  ||||||| ||
Sbjct: 162076873 ctcttctggtgtttgcatgcatagcagtctacgagatggctttacaacatgcaaagagta 162076814

                                 
Query: 458       acagaggctactagca 473
                 ||||||||||||||||
Sbjct: 162076813 acagaggctactagca 162076798



 Score =  194 bits (98), Expect = 4e-47
 Identities = 172/196 (87%), Gaps = 3/196 (1%)
 Strand = Plus / Minus

                                                                             
Query: 281       aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 340
                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162335771 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 162335712

                                                                             
Query: 341       ccaagtgcttgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 400
                 |||||||| ||||||||||||||||| |||||||| |  |||||||||||||||||   |
Sbjct: 162335711 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162335652

                                                                             
Query: 401       ttcttctggtgtttgtatacataacagcctaccagatg---ttagagcgcgcaaagaata 457
                  |||||||||||||| || |||| ||| |||  |||||   ||| | |  ||||||| ||
Sbjct: 162335651 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 162335592

                                 
Query: 458       acagaggctactagca 473
                 ||||||||||||||||
Sbjct: 162335591 acagaggctactagca 162335576



 Score =  194 bits (98), Expect = 4e-47
 Identities = 172/196 (87%), Gaps = 3/196 (1%)
 Strand = Plus / Minus

                                                                             
Query: 281       aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 340
                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162340035 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 162339976

                                                                             
Query: 341       ccaagtgcttgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 400
                 |||||||| ||||||||||||||||| |||||||| |  |||||||||||||||||   |
Sbjct: 162339975 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162339916

                                                                             
Query: 401       ttcttctggtgtttgtatacataacagcctaccagatg---ttagagcgcgcaaagaata 457
                  |||||||||||||| || |||| ||| |||  |||||   ||| | |  ||||||| ||
Sbjct: 162339915 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 162339856

                                 
Query: 458       acagaggctactagca 473
                 ||||||||||||||||
Sbjct: 162339855 acagaggctactagca 162339840



 Score =  151 bits (76), Expect = 5e-34
 Identities = 121/136 (88%)
 Strand = Plus / Minus

                                                                             
Query: 145       tcagcccccgtggccaccacggtgatcaccatccccagggagacctccgtgcccgaccac 204
                 ||||| ||| || ||| ||| |||||||||||||||||||||||| ||   |  ||||||
Sbjct: 162210340 tcagctcccatgaccagcacagtgatcaccatccccagggagaccccccaccgggaccac 162210281

                                                                             
Query: 205       atcgtctggtccctgttcaacaccctcttcctgaactggtgctgcctgggcttcgtggct 264
                  || ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 162210280 gtcctctggtcgctgttcagcaccctcttcctgaactggtgctgcctgggcttcgtggct 162210221

                                 
Query: 265       ttcgcctactccgtga 280
                 ||||||||||||||||
Sbjct: 162210220 ttcgcctactccgtga 162210205



 Score =  129 bits (65), Expect = 2e-27
 Identities = 65/65 (100%)
 Strand = Plus / Minus

                                                                             
Query: 536       ttcctacagcaggtgctagagacctacctgtccacaactgggttcaataaagtgctcttg 595
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162099224 ttcctacagcaggtgctagagacctacctgtccacaactgggttcaataaagtgctcttg 162099165

                      
Query: 596       cctgt 600
                 |||||
Sbjct: 162099164 cctgt 162099160



 Score =  129 bits (65), Expect = 2e-27
 Identities = 65/65 (100%)
 Strand = Plus / Minus

                                                                             
Query: 536       ttcctacagcaggtgctagagacctacctgtccacaactgggttcaataaagtgctcttg 595
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162339777 ttcctacagcaggtgctagagacctacctgtccacaactgggttcaataaagtgctcttg 162339718

                      
Query: 596       cctgt 600
                 |||||
Sbjct: 162339717 cctgt 162339713



 Score =  121 bits (61), Expect = 5e-25
 Identities = 64/65 (98%)
 Strand = Plus / Minus

                                                                             
Query: 536       ttcctacagcaggtgctagagacctacctgtccacaactgggttcaataaagtgctcttg 595
                 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 162076735 ttcctacagcaggtgctagagacttacctgtccacaactgggttcaataaagtgctcttg 162076676

                      
Query: 596       cctgt 600
                 |||||
Sbjct: 162076675 cctgt 162076671



 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 52/56 (92%), Gaps = 2/56 (3%)
 Strand = Plus / Minus

                                                                         
Query: 30        cacagctgctccgtctctgcatcaagaaa--cacttctcaaagcatcgcctctgcc 83
                 |||| ||||||||||||||||||||||||  |||||||||||||||| ||||||||
Sbjct: 162077900 cacacctgctccgtctctgcatcaagaaacccacttctcaaagcatctcctctgcc 162077845


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  194 bits (98), Expect = 4e-47
 Identities = 172/196 (87%), Gaps = 3/196 (1%)
 Strand = Plus / Plus

                                                                             
Query: 281       aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 340
                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 296331142 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 296331201

                                                                             
Query: 341       ccaagtgcttgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 400
                 |||||||| ||||||||||||||||| |||||||| |  |||||||||||||||||   |
Sbjct: 296331202 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 296331261

                                                                             
Query: 401       ttcttctggtgtttgtatacataacagcctaccagatg---ttagagcgcgcaaagaata 457
                  |||||||||||||| || |||| ||| |||  |||||   ||| | |  ||||||| ||
Sbjct: 296331262 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 296331321

                                 
Query: 458       acagaggctactagca 473
                 ||||||||||||||||
Sbjct: 296331322 acagaggctactagca 296331337



 Score =  172 bits (87), Expect = 1e-40
 Identities = 126/139 (90%)
 Strand = Plus / Plus

                                                                             
Query: 145       tcagcccccgtggccaccacggtgatcaccatccccagggagacctccgtgcccgaccac 204
                 ||||| ||| || ||| |||||||||||||||||||||||||||| ||   |  ||||||
Sbjct: 296330367 tcagctcccatgaccagcacggtgatcaccatccccagggagaccccccaccgggaccac 296330426

                                                                             
Query: 205       atcgtctggtccctgttcaacaccctcttcctgaactggtgctgcctgggcttcgtggct 264
                  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 296330427 gtcgtctggtcgctgttcagcaccctcttcctgaactggtgctgcctgggcttcgtggct 296330486

                                    
Query: 265       ttcgcctactccgtgaagg 283
                 |||||||||||||||||||
Sbjct: 296330487 ttcgcctactccgtgaagg 296330505


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 13,556,698
Number of extensions: 346
Number of successful extensions: 346
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 22
Length of query: 625
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 604
Effective length of database: 2,808,413,156
Effective search space: 1696281546224
Effective search space used: 1696281546224
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)