Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002378
(625 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071522.1| interferon induced transmembrane protein 2 (... 165 2e-41
Alignment gi|NP_001071610.1| interferon-induced transmembrane protein 1 (... 162 3e-40
Alignment gi|NP_863657.1| interferon-induced transmembrane protein 3 (1-8... 150 8e-37
Alignment gi|NP_001071609.1| interferon induced transmembrane family memb... 150 8e-37
Alignment gi|XP_001253014.1| PREDICTED: interferon-induced transmembrane ... 150 8e-37
Alignment gi|XP_002697369.1| PREDICTED: interferon induced transmembrane ... 142 2e-34
Alignment gi|XP_598998.1| PREDICTED: interferon induced transmembrane pro... 142 2e-34
Alignment gi|XP_869835.2| PREDICTED: interferon induced transmembrane pro... 117 6e-27
Alignment gi|XP_002707847.1| PREDICTED: inteferon-induced membrane protei... 113 1e-25
Alignment gi|XP_002684045.1| PREDICTED: interferon-induced transmembrane ... 105 3e-23
>ref|NP_001071522.1| interferon induced transmembrane protein 2 (1-8D) [Bos taurus].
Length = 124
Score = 165 bits (418), Expect = 2e-41
Identities = 80/124 (64%), Positives = 91/124 (73%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
M+K ++E+ LGAPQ+ APV TTVI IPRE SVPDHIVWSLFNT+FLNWCCLGFVAFAYS
Sbjct: 1 MLKEENEVAVLGAPQSQAPVTTTVINIPRENSVPDHIVWSLFNTVFLNWCCLGFVAFAYS 60
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKN 456
VK+RDRKMVGDI GAQSYASTAKCLNIW FVY+ AY+ R
Sbjct: 61 VKSRDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGSIVLLIFVYMAAYETALRISR 120
Query: 457 NRGY 468
+ G+
Sbjct: 121 HGGH 124
>ref|NP_001071610.1| interferon-induced transmembrane protein 1 (9-27) isoform 1 [Bos
taurus].
Length = 124
Score = 162 bits (409), Expect = 3e-40
Identities = 78/124 (62%), Positives = 90/124 (72%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
MIK +HE+ LGAPQ+ AP+ TTVI I +T+VPDHIVWSLFNT+FLNWCCLGFVAFAYS
Sbjct: 1 MIKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVWSLFNTIFLNWCCLGFVAFAYS 60
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKN 456
VK+RDRKMVGDI GAQSYASTAKCLNIW FVY+ AY+ R
Sbjct: 61 VKSRDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGSIVLLIFVYMAAYETALRISR 120
Query: 457 NRGY 468
+ G+
Sbjct: 121 HGGH 124
>ref|NP_863657.1| interferon-induced transmembrane protein 3 (1-8U) [Bos taurus].
Length = 146
Score = 150 bits (379), Expect = 8e-37
Identities = 69/93 (74%), Positives = 81/93 (87%)
Frame = +1
Query: 79 LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
+P E++K +HE+ LGAPQ+ AP+ TTVI I +T+VPDHIVWSLFNT+F+NWCCLGF
Sbjct: 16 VPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVWSLFNTIFMNWCCLGF 75
Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
VAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI
Sbjct: 76 VAFAYSVKSRDRKMVGDITGAQSYASTAKCLNI 108
>ref|NP_001071609.1| interferon induced transmembrane family member [Bos taurus].
Length = 146
Score = 150 bits (379), Expect = 8e-37
Identities = 69/93 (74%), Positives = 81/93 (87%)
Frame = +1
Query: 79 LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
+P E++K +HE+ LGAPQ+ AP+ TTVI I +T+VPDHIVWSLFNT+F+NWCCLGF
Sbjct: 16 VPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVWSLFNTIFMNWCCLGF 75
Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
VAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI
Sbjct: 76 VAFAYSVKSRDRKMVGDITGAQSYASTAKCLNI 108
>ref|XP_001253014.1| PREDICTED: interferon-induced transmembrane protein 3 (1-8U)-like
[Bos taurus].
Length = 146
Score = 150 bits (379), Expect = 8e-37
Identities = 69/93 (74%), Positives = 81/93 (87%)
Frame = +1
Query: 79 LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
+P E++K +HE+ LGAPQ+ AP+ TTVI I +T+VPDHIVWSLFNT+F+NWCCLGF
Sbjct: 16 VPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVWSLFNTIFMNWCCLGF 75
Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
VAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI
Sbjct: 76 VAFAYSVKSRDRKMVGDITGAQSYASTAKCLNI 108
>ref|XP_002697369.1| PREDICTED: interferon induced transmembrane protein 3-like [Bos
taurus].
Length = 145
Score = 142 bits (359), Expect = 2e-34
Identities = 66/93 (70%), Positives = 77/93 (82%)
Frame = +1
Query: 79 LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
+P E++K +HE+ LG PQ+ APV TTVI I ETSVP+HIVW LFNT+F+NWCCLGF
Sbjct: 16 VPPAYEVLKEEHEVAVLGVPQSQAPVTTTVINICSETSVPNHIVWFLFNTIFMNWCCLGF 75
Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
VAFAYSV++RDRKMVGDI GAQ Y STAKCLNI
Sbjct: 76 VAFAYSVESRDRKMVGDITGAQRYTSTAKCLNI 108
>ref|XP_598998.1| PREDICTED: interferon induced transmembrane protein 3-like [Bos
taurus].
Length = 145
Score = 142 bits (359), Expect = 2e-34
Identities = 66/93 (70%), Positives = 77/93 (82%)
Frame = +1
Query: 79 LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
+P E++K +HE+ LG PQ+ APV TTVI I ETSVP+HIVW LFNT+F+NWCCLGF
Sbjct: 16 VPPAYEVLKEEHEVAVLGVPQSQAPVTTTVINICSETSVPNHIVWFLFNTIFMNWCCLGF 75
Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
VAFAYSV++RDRKMVGDI GAQ Y STAKCLNI
Sbjct: 76 VAFAYSVESRDRKMVGDITGAQRYTSTAKCLNI 108
>ref|XP_869835.2| PREDICTED: interferon induced transmembrane protein 2 (1-8D)-like
[Bos taurus].
Length = 238
Score = 117 bits (294), Expect = 6e-27
Identities = 55/88 (62%), Positives = 66/88 (75%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
M + E+ +G P SAP+ VI I E DHIVWSLFNTLF+N CCLGFVAF YS
Sbjct: 1 MFSGEQEVAVMGGPAGSAPMKNAVINIQTENPGRDHIVWSLFNTLFMNICCLGFVAFDYS 60
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIW 360
V+++D+KMVGDI GAQS+ASTAKCLN+W
Sbjct: 61 VESKDQKMVGDITGAQSHASTAKCLNVW 88
>ref|XP_002707847.1| PREDICTED: inteferon-induced membrane protein Leu-13/9-27-like [Bos
taurus].
Length = 214
Score = 113 bits (283), Expect = 1e-25
Identities = 54/88 (61%), Positives = 64/88 (72%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
M + E+ G Q P+ VI I E DHIVWSLFNTLF+N CCLGFVAFAYS
Sbjct: 1 MFSGEQEVAVTGDLQARXPMKNAVINIQTENPGRDHIVWSLFNTLFMNICCLGFVAFAYS 60
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIW 360
V+++D+KMVGDI GAQS+ASTAKCLN+W
Sbjct: 61 VESKDQKMVGDITGAQSHASTAKCLNVW 88
>ref|XP_002684045.1| PREDICTED: interferon-induced transmembrane protein 3 (1-8U)-like
[Bos taurus].
Length = 96
Score = 105 bits (262), Expect = 3e-23
Identities = 46/68 (67%), Positives = 57/68 (83%)
Frame = +1
Query: 79 LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
+P E++K +HE+ LGAPQ+ AP+ TTVI I +T+VPDHIVWSLFNT+F+NWCCLGF
Sbjct: 16 VPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVWSLFNTIFMNWCCLGF 75
Query: 259 VAFAYSVK 282
VAFAYSVK
Sbjct: 76 VAFAYSVK 83
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 22,187,488
Number of extensions: 654099
Number of successful extensions: 3659
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3593
Number of HSP's successfully gapped: 15
Length of query: 208
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 110
Effective length of database: 14,438,750
Effective search space: 1588262500
Effective search space used: 1588262500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002378
(625 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533144.2| PREDICTED: similar to Interferon-induced transm... 140 9e-34
Alignment gi|XP_540516.1| PREDICTED: similar to Interferon-induced transm... 134 7e-32
Alignment gi|XP_540515.2| PREDICTED: similar to Interferon-induced transm... 129 2e-30
Alignment gi|XP_848464.1| PREDICTED: similar to IFITM5 [Canis familiaris]. 99 4e-21
Alignment gi|XP_854310.1| PREDICTED: similar to Interferon-inducible prot... 78 6e-15
Alignment gi|XP_848556.1| PREDICTED: similar to interferon induced transm... 74 8e-14
Alignment gi|XP_536539.2| PREDICTED: similar to olfactory receptor 973 [C... 74 1e-13
>ref|XP_533144.2| PREDICTED: similar to Interferon-induced transmembrane protein 3
(Interferon-inducible protein 1-8U) [Canis familiaris].
Length = 219
Score = 140 bits (353), Expect = 9e-34
Identities = 68/119 (57%), Positives = 80/119 (67%)
Frame = +1
Query: 109 QHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYSVKAR 288
Q+++D GAP ++AP TTVI +P ET VPDH+VWSLFNT+FLNW CLGFVAF YSVKAR
Sbjct: 98 QNKVDVRGAPLSTAPATTTVINVPVETVVPDHVVWSLFNTIFLNWFCLGFVAFVYSVKAR 157
Query: 289 DRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKNNRG 465
DRKMVGD+ GAQS+ASTA+CLNIW Y AY L +A G
Sbjct: 158 DRKMVGDLTGAQSFASTARCLNIWALVLGLLLTIISIVLLGMAYAAAYGALLQAMQESG 216
>ref|XP_540516.1| PREDICTED: similar to Interferon-induced transmembrane protein 1
(Interferon-induced protein 17) (Interferon-inducible
protein 9-27) (Leu-13 antigen) (CD225 antigen) [Canis
familiaris].
Length = 126
Score = 134 bits (337), Expect = 7e-32
Identities = 62/87 (71%), Positives = 73/87 (83%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
M + Q+++ GAPQ+ PV TTVI I +T VPDHIVWSLFNT+F+NWCCLG VAFAYS
Sbjct: 1 MDQDQYKVPETGAPQSMVPVTTTVINIRSDTVVPDHIVWSLFNTVFMNWCCLGIVAFAYS 60
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNI 357
VKARDRKMVGD+ GAQS+ASTA+CLNI
Sbjct: 61 VKARDRKMVGDLTGAQSFASTARCLNI 87
>ref|XP_540515.2| PREDICTED: similar to Interferon-induced transmembrane protein 3
(Interferon-inducible protein 1-8U) [Canis familiaris].
Length = 165
Score = 129 bits (325), Expect = 2e-30
Identities = 60/84 (71%), Positives = 71/84 (84%)
Frame = +1
Query: 109 QHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYSVKAR 288
Q+++D GA ++AP TTVI +P ET VPDH+VWSLFNT+FLN CLGFVAF YSVKAR
Sbjct: 48 QNKVDVRGALLSTAPATTTVINVPEETVVPDHVVWSLFNTIFLNSFCLGFVAFVYSVKAR 107
Query: 289 DRKMVGDIIGAQSYASTAKCLNIW 360
DRKMVGD+ GAQS+ASTA+CLNIW
Sbjct: 108 DRKMVGDLTGAQSFASTARCLNIW 131
>ref|XP_848464.1| PREDICTED: similar to IFITM5 [Canis familiaris].
Length = 136
Score = 98.6 bits (244), Expect = 4e-21
Identities = 48/92 (52%), Positives = 60/92 (65%)
Frame = +1
Query: 82 PLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFV 261
P T EM+K +HE+ LG+ VPDH+VWSLFNT+F+NWCCLGFV
Sbjct: 17 PPTYEMLKEEHEVVVLGSGL-----------------VPDHVVWSLFNTVFMNWCCLGFV 59
Query: 262 AFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
AFAYS KARD+K+ GD+ A+ + S AKC NI
Sbjct: 60 AFAYSEKARDQKVAGDLEAARRFGSKAKCYNI 91
>ref|XP_854310.1| PREDICTED: similar to Interferon-inducible protein [Canis
familiaris].
Length = 274
Score = 78.2 bits (191), Expect = 6e-15
Identities = 46/118 (38%), Positives = 67/118 (56%), Gaps = 10/118 (8%)
Frame = +1
Query: 34 AAPSLHQETLLKASPLPLTLEMIKSQHE-MDGLGAPQTSAPVA--------TTVITI-PR 183
AAP+ +P +E S+ + + GAPQ +A TTVI + P
Sbjct: 133 AAPAPEPSASPPMAPTLFPMESKSSKTDSVRASGAPQACKHLAEKKTMTNPTTVIEVYPD 192
Query: 184 ETSVPDHIVWSLFNTLFLNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
T V D+ +WS+FN ++LN+CCLGF+A AYS+K RD+K++ D+ GA A TA+ NI
Sbjct: 193 TTEVNDYYLWSIFNFVYLNFCCLGFIALAYSLKVRDKKLLNDLNGAVEDAKTARLFNI 250
>ref|XP_848556.1| PREDICTED: similar to interferon induced transmembrane protein 1
(9-27) [Canis familiaris].
Length = 79
Score = 74.3 bits (181), Expect = 8e-14
Identities = 31/42 (73%), Positives = 37/42 (88%)
Frame = +1
Query: 235 LNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIW 360
+NWC GF+AF+YSVK RDRKM GD+ GAQS+ASTA+CLNIW
Sbjct: 1 MNWCGRGFMAFSYSVKTRDRKMAGDLTGAQSFASTARCLNIW 42
>ref|XP_536539.2| PREDICTED: similar to olfactory receptor 973 [Canis familiaris].
Length = 370
Score = 73.6 bits (179), Expect = 1e-13
Identities = 30/37 (81%), Positives = 34/37 (91%)
Frame = +1
Query: 193 VPDHIVWSLFNTLFLNWCCLGFVAFAYSVKARDRKMV 303
+PDHI WSLFNT+FLNWCCLGF AFAYSVK+R RK+V
Sbjct: 1 MPDHIFWSLFNTIFLNWCCLGFAAFAYSVKSRGRKLV 37
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 22,988,746
Number of extensions: 653479
Number of successful extensions: 3366
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3294
Number of HSP's successfully gapped: 7
Length of query: 208
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 110
Effective length of database: 15,607,576
Effective search space: 1716833360
Effective search space used: 1716833360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002378
(625 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003632.3| interferon-induced transmembrane protein 1 [Hom... 146 1e-35
Alignment gi|NP_066362.2| interferon-induced transmembrane protein 3 [Hom... 144 5e-35
Alignment gi|NP_006426.2| interferon-induced transmembrane protein 2 [Hom... 140 9e-34
Alignment gi|NP_001020466.1| interferon-induced transmembrane protein 5 [... 85 6e-17
Alignment gi|NP_001164291.2| interferon-induced transmembrane protein 10 ... 76 2e-14
>ref|NP_003632.3| interferon-induced transmembrane protein 1 [Homo sapiens].
Length = 125
Score = 146 bits (369), Expect = 1e-35
Identities = 73/125 (58%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
M K +HE+ LGAP ++ +TVI I ETSVPDH+VWSLFNTLFLNWCCLGF+AFAYS
Sbjct: 1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS 60
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQ-MLERAK 453
VK+RDRKMVGD+ GAQ+YASTAKCLNIW F +T Y ML+ +
Sbjct: 61 VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ 120
Query: 454 NNRGY 468
RGY
Sbjct: 121 EKRGY 125
>ref|NP_066362.2| interferon-induced transmembrane protein 3 [Homo sapiens].
Length = 133
Score = 144 bits (364), Expect = 5e-35
Identities = 67/93 (72%), Positives = 77/93 (82%)
Frame = +1
Query: 82 PLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFV 261
P EM+K +HE+ LGAP AP +TVI I ETSVPDH+VWSLFNTLF+N CCLGF+
Sbjct: 17 PPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVWSLFNTLFMNPCCLGFI 76
Query: 262 AFAYSVKARDRKMVGDIIGAQSYASTAKCLNIW 360
AFAYSVK+RDRKMVGD+ GAQ+YASTAKCLNIW
Sbjct: 77 AFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIW 109
>ref|NP_006426.2| interferon-induced transmembrane protein 2 [Homo sapiens].
Length = 132
Score = 140 bits (353), Expect = 9e-34
Identities = 65/93 (69%), Positives = 75/93 (80%)
Frame = +1
Query: 82 PLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFV 261
P EM+K + E+ LG P AP +TVI I ETSVPDH+VWSLFNTLF+N CCLGF+
Sbjct: 16 PPNYEMLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVWSLFNTLFMNTCCLGFI 75
Query: 262 AFAYSVKARDRKMVGDIIGAQSYASTAKCLNIW 360
AFAYSVK+RDRKMVGD+ GAQ+YASTAKCLNIW
Sbjct: 76 AFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIW 108
>ref|NP_001020466.1| interferon-induced transmembrane protein 5 [Homo sapiens].
Length = 132
Score = 84.7 bits (208), Expect = 6e-17
Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Frame = +1
Query: 133 APQTSAPVATTVITIPRETSVP-DHIVWSLFNTLFLNWCCLGFVAFAYSVKARDRKMVGD 309
AP S A T +T+ P DH++WS+F+TL+LN CCLGF+A AYS+KARD+K+VGD
Sbjct: 12 APTPSKAGAHTALTLGAPHPPPRDHLIWSVFSTLYLNLCCLGFLALAYSIKARDQKVVGD 71
Query: 310 IIGAQSYASTAKCLNI 357
+ A+ + S AKC NI
Sbjct: 72 LEAARRFGSKAKCYNI 87
>ref|NP_001164291.2| interferon-induced transmembrane protein 10 [Homo sapiens].
Length = 228
Score = 76.3 bits (186), Expect = 2e-14
Identities = 35/67 (52%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Frame = +1
Query: 160 TTVITI-PRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYAS 336
TTVI + P T V D+ +WS+FN ++LN+CCLGF+A AYS+K RD+K++ D+ GA A
Sbjct: 138 TTVIEVYPDTTEVNDYYLWSIFNFVYLNFCCLGFIALAYSLKVRDKKLLNDLNGAVEDAK 197
Query: 337 TAKCLNI 357
TA+ NI
Sbjct: 198 TARLFNI 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 22,567,967
Number of extensions: 643623
Number of successful extensions: 3528
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3472
Number of HSP's successfully gapped: 5
Length of query: 208
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 110
Effective length of database: 15,066,692
Effective search space: 1657336120
Effective search space used: 1657336120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002378
(625 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079654.1| interferon-induced transmembrane protein 3 [Mus... 142 3e-34
Alignment gi|XP_910503.1| PREDICTED: interferon-induced transmembrane pro... 140 6e-34
Alignment gi|NP_109619.1| interferon-induced transmembrane protein 2 [Mus... 140 8e-34
Alignment gi|NP_083244.1| interferon induced transmembrane protein 7 [Mus... 125 2e-29
Alignment gi|XP_357752.4| PREDICTED: interferon-induced transmembrane pro... 125 3e-29
Alignment gi|XP_920076.2| PREDICTED: interferon-induced transmembrane pro... 125 3e-29
Alignment gi|NP_001106186.1| interferon-induced transmembrane protein 1 [... 120 6e-28
Alignment gi|NP_081096.3| interferon-induced transmembrane protein 1 [Mus... 120 6e-28
Alignment gi|NP_001028804.1| interferon induced transmembrane protein 6 [... 104 5e-23
Alignment gi|NP_444318.1| interferon-induced transmembrane protein 5 [Mus... 76 2e-14
>ref|NP_079654.1| interferon-induced transmembrane protein 3 [Mus musculus].
Length = 137
Score = 142 bits (357), Expect = 3e-34
Identities = 65/92 (70%), Positives = 78/92 (84%)
Frame = +1
Query: 82 PLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFV 261
P E IK ++E+ +GAP SA V TTVI +PRE SVPDH+VWSLFNTLF+N+CCLGF+
Sbjct: 17 PPNYERIKEEYEVAEMGAPHGSASVRTTVINMPREVSVPDHVVWSLFNTLFMNFCCLGFI 76
Query: 262 AFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
A+AYSVK+RDRKMVGD+ GAQ+YASTAKCLNI
Sbjct: 77 AYAYSVKSRDRKMVGDVTGAQAYASTAKCLNI 108
>ref|XP_910503.1| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
musculus].
Length = 144
Score = 140 bits (354), Expect = 6e-34
Identities = 65/93 (69%), Positives = 77/93 (82%)
Frame = +1
Query: 79 LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
LP + E IK ++ + LG P SA V TTVI +PRE SVPDH+VWSLFNTLF N CCLGF
Sbjct: 15 LPPSYETIKEEYRVTELGEPSNSAVVRTTVINMPREVSVPDHVVWSLFNTLFFNACCLGF 74
Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
+A+AYSVK+RDRKMVGD++GAQ+YASTAKCLNI
Sbjct: 75 IAYAYSVKSRDRKMVGDVVGAQAYASTAKCLNI 107
>ref|NP_109619.1| interferon-induced transmembrane protein 2 [Mus musculus].
Length = 144
Score = 140 bits (353), Expect = 8e-34
Identities = 66/93 (70%), Positives = 77/93 (82%)
Frame = +1
Query: 79 LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
LP + E IK ++ + LG P SA V TTVI +PRE SVPDH+VWSLFNTLF N CCLGF
Sbjct: 15 LPPSYETIKEEYGVTELGEPSNSAVVRTTVINMPREVSVPDHVVWSLFNTLFFNACCLGF 74
Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
VA+AYSVK+RDRKMVGD++GAQ+YASTAKCLNI
Sbjct: 75 VAYAYSVKSRDRKMVGDVVGAQAYASTAKCLNI 107
>ref|NP_083244.1| interferon induced transmembrane protein 7 [Mus musculus].
Length = 107
Score = 125 bits (314), Expect = 2e-29
Identities = 58/87 (66%), Positives = 73/87 (83%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
M K QHE+ +G P TS TT+IT+P E S PD++VWSLFNTLF+N+CCLGF+A+AYS
Sbjct: 1 MPKDQHEVVVMGTPHTSTSSTTTIITMP-EISKPDYVVWSLFNTLFMNFCCLGFIAYAYS 59
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNI 357
VK+RDRKMVGD+ GAQ++ASTA+CLNI
Sbjct: 60 VKSRDRKMVGDMTGAQAFASTARCLNI 86
>ref|XP_357752.4| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
musculus].
Length = 211
Score = 125 bits (313), Expect = 3e-29
Identities = 61/93 (65%), Positives = 72/93 (77%)
Frame = +1
Query: 79 LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
LP + E IK ++ + LG P SA V TTVI +PRE SVPDH+ WSLF+TLF N CCLGF
Sbjct: 15 LPPSYETIKEEYGVTELGEPNNSAAVRTTVINMPREVSVPDHVAWSLFSTLFFNACCLGF 74
Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
A+AYS RDRKMVGD+IGAQ++ASTAKCLNI
Sbjct: 75 AAYAYS---RDRKMVGDVIGAQAHASTAKCLNI 104
>ref|XP_920076.2| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
musculus].
Length = 211
Score = 125 bits (313), Expect = 3e-29
Identities = 61/93 (65%), Positives = 72/93 (77%)
Frame = +1
Query: 79 LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
LP + E IK ++ + LG P SA V TTVI +PRE SVPDH+ WSLF+TLF N CCLGF
Sbjct: 15 LPPSYETIKEEYGVTELGEPNNSAAVRTTVINMPREVSVPDHVAWSLFSTLFFNACCLGF 74
Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
A+AYS RDRKMVGD+IGAQ++ASTAKCLNI
Sbjct: 75 AAYAYS---RDRKMVGDVIGAQAHASTAKCLNI 104
>ref|NP_001106186.1| interferon-induced transmembrane protein 1 [Mus musculus].
Length = 106
Score = 120 bits (302), Expect = 6e-28
Identities = 58/87 (66%), Positives = 68/87 (78%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
M K Q E+ LG+P S T I +P E S PDH+VWSLFNTLF+N+CCLGFVA+AYS
Sbjct: 1 MPKEQQEVVVLGSPHISTSATATTINMP-EISTPDHVVWSLFNTLFMNFCCLGFVAYAYS 59
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNI 357
VK+RDRKMVGD GAQ++ASTAKCLNI
Sbjct: 60 VKSRDRKMVGDTTGAQAFASTAKCLNI 86
>ref|NP_081096.3| interferon-induced transmembrane protein 1 [Mus musculus].
Length = 106
Score = 120 bits (302), Expect = 6e-28
Identities = 58/87 (66%), Positives = 68/87 (78%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
M K Q E+ LG+P S T I +P E S PDH+VWSLFNTLF+N+CCLGFVA+AYS
Sbjct: 1 MPKEQQEVVVLGSPHISTSATATTINMP-EISTPDHVVWSLFNTLFMNFCCLGFVAYAYS 59
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNI 357
VK+RDRKMVGD GAQ++ASTAKCLNI
Sbjct: 60 VKSRDRKMVGDTTGAQAFASTAKCLNI 86
>ref|NP_001028804.1| interferon induced transmembrane protein 6 [Mus musculus].
Length = 104
Score = 104 bits (260), Expect = 5e-23
Identities = 48/71 (67%), Positives = 58/71 (81%)
Frame = +1
Query: 145 SAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYSVKARDRKMVGDIIGAQ 324
SAPV +TV+ I + PDHI WS FNT+F+N CCLGF+A+ YSVK+RDRKMVGD+ GAQ
Sbjct: 8 SAPVPSTVVCINSDVIQPDHITWSTFNTVFMNGCCLGFIAYIYSVKSRDRKMVGDMTGAQ 67
Query: 325 SYASTAKCLNI 357
S+ASTAK LNI
Sbjct: 68 SHASTAKILNI 78
>ref|NP_444318.1| interferon-induced transmembrane protein 5 [Mus musculus].
Length = 134
Score = 75.9 bits (185), Expect = 2e-14
Identities = 31/53 (58%), Positives = 43/53 (81%)
Frame = +1
Query: 199 DHIVWSLFNTLFLNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI 357
DH++WS+F+T++LN CCLGF+A +SVKARD+KM G++ A+ Y S AKC NI
Sbjct: 37 DHMLWSVFSTMYLNLCCLGFLALVHSVKARDQKMAGNLEAARQYGSKAKCYNI 89
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 19,072,167
Number of extensions: 532498
Number of successful extensions: 2903
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2843
Number of HSP's successfully gapped: 11
Length of query: 208
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 111
Effective length of database: 12,704,067
Effective search space: 1410151437
Effective search space used: 1410151437
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002378
(625 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124278.1| PREDICTED: interferon-induced transmembrane ... 213 9e-56
Alignment gi|XP_003124283.1| PREDICTED: interferon-induced transmembrane ... 187 3e-48
Alignment gi|XP_003354459.1| PREDICTED: interferon-induced transmembrane ... 174 4e-44
Alignment gi|XP_003354458.1| PREDICTED: interferon-induced transmembrane ... 174 4e-44
Alignment gi|XP_003354457.1| PREDICTED: interferon-induced transmembrane ... 174 4e-44
Alignment gi|XP_003354456.1| PREDICTED: interferon-induced transmembrane ... 174 4e-44
Alignment gi|XP_003354463.1| PREDICTED: interferon-induced transmembrane ... 172 2e-43
Alignment gi|NP_001188311.1| interferon-induced transmembrane protein 3 [... 169 1e-42
Alignment gi|XP_003353695.1| PREDICTED: interferon-induced transmembrane ... 160 5e-40
Alignment gi|XP_003354469.1| PREDICTED: interferon-induced transmembrane ... 132 1e-31
>ref|XP_003124278.1| PREDICTED: interferon-induced transmembrane protein 1 [Sus scrofa].
Length = 124
Score = 213 bits (541), Expect = 9e-56
Identities = 105/124 (84%), Positives = 106/124 (85%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS
Sbjct: 1 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 60
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKN 456
VKARDRKMVGDIIGAQSYASTAKCLNIW FVYITAY MLERAK+
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALILGLILTIGATVLLVFVYITAYHMLERAKS 120
Query: 457 NRGY 468
NRGY
Sbjct: 121 NRGY 124
>ref|XP_003124283.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
scrofa].
Length = 124
Score = 187 bits (476), Expect = 3e-48
Identities = 91/124 (73%), Positives = 98/124 (79%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
M++ +HE+ LGAPQTSAPVATTVI I ETSVPDH+VWSLFN LF+NWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKN 456
VKARDRKMVGDIIGAQSYASTAKCLNIW F YITAY MLERAK+
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFAYITAYHMLERAKS 120
Query: 457 NRGY 468
NRGY
Sbjct: 121 NRGY 124
>ref|XP_003354459.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
4 [Sus scrofa].
Length = 125
Score = 174 bits (440), Expect = 4e-44
Identities = 86/125 (68%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
M++ +HE+ LGAPQTSAPVATTVI I ETSVPDH+VWSLFN LF+NWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 453
VKARDRKMVGDIIGAQSYASTAKCLNIW F I Y+M L+ AK
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 454 NNRGY 468
+NRGY
Sbjct: 121 SNRGY 125
>ref|XP_003354458.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
3 [Sus scrofa].
Length = 125
Score = 174 bits (440), Expect = 4e-44
Identities = 86/125 (68%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
M++ +HE+ LGAPQTSAPVATTVI I ETSVPDH+VWSLFN LF+NWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 453
VKARDRKMVGDIIGAQSYASTAKCLNIW F I Y+M L+ AK
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 454 NNRGY 468
+NRGY
Sbjct: 121 SNRGY 125
>ref|XP_003354457.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
2 [Sus scrofa].
Length = 125
Score = 174 bits (440), Expect = 4e-44
Identities = 86/125 (68%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
M++ +HE+ LGAPQTSAPVATTVI I ETSVPDH+VWSLFN LF+NWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 453
VKARDRKMVGDIIGAQSYASTAKCLNIW F I Y+M L+ AK
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 454 NNRGY 468
+NRGY
Sbjct: 121 SNRGY 125
>ref|XP_003354456.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
1 [Sus scrofa].
Length = 125
Score = 174 bits (440), Expect = 4e-44
Identities = 86/125 (68%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
M++ +HE+ LGAPQTSAPVATTVI I ETSVPDH+VWSLFN LF+NWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 453
VKARDRKMVGDIIGAQSYASTAKCLNIW F I Y+M L+ AK
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 454 NNRGY 468
+NRGY
Sbjct: 121 SNRGY 125
>ref|XP_003354463.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
scrofa].
Length = 125
Score = 172 bits (435), Expect = 2e-43
Identities = 85/125 (68%), Positives = 94/125 (75%), Gaps = 1/125 (0%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
M++ +HE+ LGAPQTSAPVATTVI I ETSVPDH+VWSLFN LF+NWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 277 VKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 453
VKARDRKMVGDI GAQSYASTAKCLNIW F I Y+M L+ AK
Sbjct: 61 VKARDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 454 NNRGY 468
+NRGY
Sbjct: 121 SNRGY 125
>ref|NP_001188311.1| interferon-induced transmembrane protein 3 [Sus scrofa].
Length = 145
Score = 169 bits (428), Expect = 1e-42
Identities = 80/93 (86%), Positives = 85/93 (91%)
Frame = +1
Query: 82 PLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFV 261
P T EM+K +HE+ LGAPQTSAPVATTVI I ETSVPDH+VWSLFNTLF+NWCCLGFV
Sbjct: 16 PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFV 75
Query: 262 AFAYSVKARDRKMVGDIIGAQSYASTAKCLNIW 360
AFAYSVKARDRKMVGDIIGAQSYASTAKCLNIW
Sbjct: 76 AFAYSVKARDRKMVGDIIGAQSYASTAKCLNIW 108
>ref|XP_003353695.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
scrofa].
Length = 207
Score = 160 bits (405), Expect = 5e-40
Identities = 79/131 (60%), Positives = 94/131 (71%), Gaps = 1/131 (0%)
Frame = +1
Query: 79 LPLTLEMIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGF 258
+P + + +K + E+ +G P+ SAP+ +TVITIPRET DH+VWSLF+TLFLNWCCLGF
Sbjct: 77 VPHSQDTVKEEQEVAEMGPPEGSAPMTSTVITIPRETPHRDHVVWSLFSTLFLNWCCLGF 136
Query: 259 VAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM 438
VAFAYSVKARDRKMVGDI GAQSYASTAKCLNIW F I Y+M
Sbjct: 137 VAFAYSVKARDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEM 196
Query: 439 -LERAKNNRGY 468
L+ AK+NRGY
Sbjct: 197 ALQHAKSNRGY 207
>ref|XP_003354469.1| PREDICTED: interferon-induced transmembrane protein 3-like [Sus
scrofa].
Length = 93
Score = 132 bits (332), Expect = 1e-31
Identities = 62/62 (100%), Positives = 62/62 (100%)
Frame = +1
Query: 97 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 276
MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS
Sbjct: 1 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 60
Query: 277 VK 282
VK
Sbjct: 61 VK 62
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 14,484,894
Number of extensions: 446974
Number of successful extensions: 2446
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2397
Number of HSP's successfully gapped: 14
Length of query: 208
Length of database: 11,343,932
Length adjustment: 94
Effective length of query: 114
Effective length of database: 9,003,614
Effective search space: 1026411996
Effective search space used: 1026411996
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002378
(625 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 551 e-154
Sscrofa_Chr01 194 4e-47
>Sscrofa_Chr02
|| Length = 162569375
Score = 551 bits (278), Expect = e-154
Identities = 278/278 (100%)
Strand = Plus / Plus
Query: 6 actggggcccttctgacatccagacacagctgctccgtctctgcatcaagaaacacttct 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333077 actggggcccttctgacatccagacacagctgctccgtctctgcatcaagaaacacttct 162333136
Query: 66 caaagcatcgcctctgccactgaccctggagatgatcaagagccagcacgagatggacgg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333137 caaagcatcgcctctgccactgaccctggagatgatcaagagccagcacgagatggacgg 162333196
Query: 126 gctgggggctccccagacctcagcccccgtggccaccacggtgatcaccatccccaggga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333197 gctgggggctccccagacctcagcccccgtggccaccacggtgatcaccatccccaggga 162333256
Query: 186 gacctccgtgcccgaccacatcgtctggtccctgttcaacaccctcttcctgaactggtg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333257 gacctccgtgcccgaccacatcgtctggtccctgttcaacaccctcttcctgaactggtg 162333316
Query: 246 ctgcctgggcttcgtggctttcgcctactccgtgaagg 283
||||||||||||||||||||||||||||||||||||||
Sbjct: 162333317 ctgcctgggcttcgtggctttcgcctactccgtgaagg 162333354
Score = 543 bits (274), Expect = e-152
Identities = 277/278 (99%)
Strand = Plus / Minus
Query: 6 actggggcccttctgacatccagacacagctgctccgtctctgcatcaagaaacacttct 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100377 actggggcccttctgacatccagacacagctgctccgtctctgcatcaagaaacacttct 162100318
Query: 66 caaagcatcgcctctgccactgaccctggagatgatcaagagccagcacgagatggacgg 125
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100317 caaagcatctcctctgccactgaccctggagatgatcaagagccagcacgagatggacgg 162100258
Query: 126 gctgggggctccccagacctcagcccccgtggccaccacggtgatcaccatccccaggga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100257 gctgggggctccccagacctcagcccccgtggccaccacggtgatcaccatccccaggga 162100198
Query: 186 gacctccgtgcccgaccacatcgtctggtccctgttcaacaccctcttcctgaactggtg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100197 gacctccgtgcccgaccacatcgtctggtccctgttcaacaccctcttcctgaactggtg 162100138
Query: 246 ctgcctgggcttcgtggctttcgcctactccgtgaagg 283
||||||||||||||||||||||||||||||||||||||
Sbjct: 162100137 ctgcctgggcttcgtggctttcgcctactccgtgaagg 162100100
Score = 359 bits (181), Expect = 1e-96
Identities = 190/193 (98%)
Strand = Plus / Minus
Query: 281 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162099479 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162099420
Query: 341 ccaagtgcttgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 400
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162099419 ccaagtgcctgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 162099360
Query: 401 ttcttctggtgtttgtatacataacagcctaccagatgttagagcgcgcaaagaataaca 460
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 162099359 ttcttctggtgtttgtatacataacagcctaccatatgttagagcgcgcaaagagtaaca 162099300
Query: 461 gaggctactagca 473
|||||||||||||
Sbjct: 162099299 gaggctactagca 162099287
Score = 287 bits (145), Expect = 4e-75
Identities = 181/193 (93%)
Strand = Plus / Plus
Query: 281 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096290 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162096349
Query: 341 ccaagtgcttgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 400
|||||||| ||||||||||||||||| |||||||| | ||||||||||||||||| |
Sbjct: 162096350 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162096409
Query: 401 ttcttctggtgtttgtatacataacagcctaccagatgttagagcgcgcaaagaataaca 460
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 162096410 ctcttctggtgtttgcatacataacagcctaccatatgttagagcgcgcaaagagtaaca 162096469
Query: 461 gaggctactagca 473
|||||||||||||
Sbjct: 162096470 gaggctactagca 162096482
Score = 274 bits (138), Expect = 5e-71
Identities = 165/174 (94%)
Strand = Plus / Minus
Query: 110 agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 169
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072434 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 162072375
Query: 170 tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 229
||| ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 162072374 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacaccc 162072315
Query: 230 tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 283
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072314 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162072261
Score = 274 bits (138), Expect = 5e-71
Identities = 165/174 (94%)
Strand = Plus / Plus
Query: 110 agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 169
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353246 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 162353305
Query: 170 tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 229
||| ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 162353306 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacaccc 162353365
Query: 230 tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 283
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353366 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162353419
Score = 266 bits (134), Expect = 1e-68
Identities = 164/174 (94%)
Strand = Plus / Minus
Query: 110 agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 169
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077802 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 162077743
Query: 170 tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 229
||| ||||| || ||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 162077742 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacgccc 162077683
Query: 230 tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 283
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077682 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162077629
Score = 266 bits (134), Expect = 1e-68
Identities = 164/174 (94%)
Strand = Plus / Plus
Query: 110 agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 169
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095483 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 162095542
Query: 170 tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 229
||| ||||| || ||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 162095543 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacgccc 162095602
Query: 230 tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 283
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095603 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162095656
Score = 266 bits (134), Expect = 1e-68
Identities = 140/142 (98%)
Strand = Plus / Minus
Query: 281 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162102703 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162102644
Query: 341 ccaagtgcttgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 400
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 162102643 ccaagtgcctgaacatctgggctctggtcctgggcctcattctgaccatcggagccactg 162102584
Query: 401 ttcttctggtgtttgtatacat 422
||||||||||||||||||||||
Sbjct: 162102583 ttcttctggtgtttgtatacat 162102562
Score = 266 bits (134), Expect = 1e-68
Identities = 164/174 (94%)
Strand = Plus / Minus
Query: 110 agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 169
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340843 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 162340784
Query: 170 tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 229
||| ||||| || ||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 162340783 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacgccc 162340724
Query: 230 tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 283
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340723 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162340670
Score = 210 bits (106), Expect = 7e-52
Identities = 174/196 (88%), Gaps = 3/196 (1%)
Strand = Plus / Minus
Query: 281 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162076993 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162076934
Query: 341 ccaagtgcttgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 400
|||||||| ||||||||||||||||| |||||||| | ||||||||||||||||| |
Sbjct: 162076933 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162076874
Query: 401 ttcttctggtgtttgtatacataacagcctaccagatg---ttagagcgcgcaaagaata 457
|||||||||||||| || |||| ||| |||| ||||| ||| | | ||||||| ||
Sbjct: 162076873 ctcttctggtgtttgcatgcatagcagtctacgagatggctttacaacatgcaaagagta 162076814
Query: 458 acagaggctactagca 473
||||||||||||||||
Sbjct: 162076813 acagaggctactagca 162076798
Score = 194 bits (98), Expect = 4e-47
Identities = 172/196 (87%), Gaps = 3/196 (1%)
Strand = Plus / Minus
Query: 281 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 340
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162335771 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 162335712
Query: 341 ccaagtgcttgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 400
|||||||| ||||||||||||||||| |||||||| | ||||||||||||||||| |
Sbjct: 162335711 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162335652
Query: 401 ttcttctggtgtttgtatacataacagcctaccagatg---ttagagcgcgcaaagaata 457
|||||||||||||| || |||| ||| ||| ||||| ||| | | ||||||| ||
Sbjct: 162335651 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 162335592
Query: 458 acagaggctactagca 473
||||||||||||||||
Sbjct: 162335591 acagaggctactagca 162335576
Score = 194 bits (98), Expect = 4e-47
Identities = 172/196 (87%), Gaps = 3/196 (1%)
Strand = Plus / Minus
Query: 281 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 340
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162340035 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 162339976
Query: 341 ccaagtgcttgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 400
|||||||| ||||||||||||||||| |||||||| | ||||||||||||||||| |
Sbjct: 162339975 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162339916
Query: 401 ttcttctggtgtttgtatacataacagcctaccagatg---ttagagcgcgcaaagaata 457
|||||||||||||| || |||| ||| ||| ||||| ||| | | ||||||| ||
Sbjct: 162339915 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 162339856
Query: 458 acagaggctactagca 473
||||||||||||||||
Sbjct: 162339855 acagaggctactagca 162339840
Score = 151 bits (76), Expect = 5e-34
Identities = 121/136 (88%)
Strand = Plus / Minus
Query: 145 tcagcccccgtggccaccacggtgatcaccatccccagggagacctccgtgcccgaccac 204
||||| ||| || ||| ||| |||||||||||||||||||||||| || | ||||||
Sbjct: 162210340 tcagctcccatgaccagcacagtgatcaccatccccagggagaccccccaccgggaccac 162210281
Query: 205 atcgtctggtccctgttcaacaccctcttcctgaactggtgctgcctgggcttcgtggct 264
|| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 162210280 gtcctctggtcgctgttcagcaccctcttcctgaactggtgctgcctgggcttcgtggct 162210221
Query: 265 ttcgcctactccgtga 280
||||||||||||||||
Sbjct: 162210220 ttcgcctactccgtga 162210205
Score = 129 bits (65), Expect = 2e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 536 ttcctacagcaggtgctagagacctacctgtccacaactgggttcaataaagtgctcttg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162099224 ttcctacagcaggtgctagagacctacctgtccacaactgggttcaataaagtgctcttg 162099165
Query: 596 cctgt 600
|||||
Sbjct: 162099164 cctgt 162099160
Score = 129 bits (65), Expect = 2e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 536 ttcctacagcaggtgctagagacctacctgtccacaactgggttcaataaagtgctcttg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162339777 ttcctacagcaggtgctagagacctacctgtccacaactgggttcaataaagtgctcttg 162339718
Query: 596 cctgt 600
|||||
Sbjct: 162339717 cctgt 162339713
Score = 121 bits (61), Expect = 5e-25
Identities = 64/65 (98%)
Strand = Plus / Minus
Query: 536 ttcctacagcaggtgctagagacctacctgtccacaactgggttcaataaagtgctcttg 595
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 162076735 ttcctacagcaggtgctagagacttacctgtccacaactgggttcaataaagtgctcttg 162076676
Query: 596 cctgt 600
|||||
Sbjct: 162076675 cctgt 162076671
Score = 73.8 bits (37), Expect = 1e-10
Identities = 52/56 (92%), Gaps = 2/56 (3%)
Strand = Plus / Minus
Query: 30 cacagctgctccgtctctgcatcaagaaa--cacttctcaaagcatcgcctctgcc 83
|||| |||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 162077900 cacacctgctccgtctctgcatcaagaaacccacttctcaaagcatctcctctgcc 162077845
>Sscrofa_Chr01
|| Length = 315321322
Score = 194 bits (98), Expect = 4e-47
Identities = 172/196 (87%), Gaps = 3/196 (1%)
Strand = Plus / Plus
Query: 281 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 340
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 296331142 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 296331201
Query: 341 ccaagtgcttgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 400
|||||||| ||||||||||||||||| |||||||| | ||||||||||||||||| |
Sbjct: 296331202 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 296331261
Query: 401 ttcttctggtgtttgtatacataacagcctaccagatg---ttagagcgcgcaaagaata 457
|||||||||||||| || |||| ||| ||| ||||| ||| | | ||||||| ||
Sbjct: 296331262 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 296331321
Query: 458 acagaggctactagca 473
||||||||||||||||
Sbjct: 296331322 acagaggctactagca 296331337
Score = 172 bits (87), Expect = 1e-40
Identities = 126/139 (90%)
Strand = Plus / Plus
Query: 145 tcagcccccgtggccaccacggtgatcaccatccccagggagacctccgtgcccgaccac 204
||||| ||| || ||| |||||||||||||||||||||||||||| || | ||||||
Sbjct: 296330367 tcagctcccatgaccagcacggtgatcaccatccccagggagaccccccaccgggaccac 296330426
Query: 205 atcgtctggtccctgttcaacaccctcttcctgaactggtgctgcctgggcttcgtggct 264
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 296330427 gtcgtctggtcgctgttcagcaccctcttcctgaactggtgctgcctgggcttcgtggct 296330486
Query: 265 ttcgcctactccgtgaagg 283
|||||||||||||||||||
Sbjct: 296330487 ttcgcctactccgtgaagg 296330505
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 13,556,698
Number of extensions: 346
Number of successful extensions: 346
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 22
Length of query: 625
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 604
Effective length of database: 2,808,413,156
Effective search space: 1696281546224
Effective search space used: 1696281546224
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)