Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002380
(619 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071609.1| interferon induced transmembrane family memb... 228 2e-60
Alignment gi|XP_002697369.1| PREDICTED: interferon induced transmembrane ... 223 1e-58
Alignment gi|XP_598998.1| PREDICTED: interferon induced transmembrane pro... 223 1e-58
Alignment gi|XP_001253014.1| PREDICTED: interferon-induced transmembrane ... 222 2e-58
Alignment gi|NP_863657.1| interferon-induced transmembrane protein 3 (1-8... 220 6e-58
Alignment gi|NP_001071610.1| interferon-induced transmembrane protein 1 (... 184 5e-47
Alignment gi|NP_001071522.1| interferon induced transmembrane protein 2 (... 179 2e-45
Alignment gi|XP_869835.2| PREDICTED: interferon induced transmembrane pro... 150 6e-37
Alignment gi|XP_002707847.1| PREDICTED: inteferon-induced membrane protei... 146 1e-35
Alignment gi|XP_002684045.1| PREDICTED: interferon-induced transmembrane ... 141 4e-34
>ref|NP_001071609.1| interferon induced transmembrane family member [Bos taurus].
Length = 146
Score = 228 bits (582), Expect = 2e-60
Identities = 109/146 (74%), Positives = 129/146 (88%), Gaps = 1/146 (0%)
Frame = +1
Query: 70 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 246
MN SQP FTGAHG PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1 MNRTSQPLFTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60
Query: 247 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIA 426
SLFNT+FMNWCCLGFVAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI +LVLG+LL +
Sbjct: 61 SLFNTIFMNWCCLGFVAFAYSVKSRDRKMVGDITGAQSYASTAKCLNICSLVLGILLTVV 120
Query: 427 FIIVCTTGSLVIFQAVLQLIKDYRGY 504
I++ +TGSL+I QAV +L+++Y G+
Sbjct: 121 LIVLVSTGSLMIVQAVSELMQNYGGH 146
>ref|XP_002697369.1| PREDICTED: interferon induced transmembrane protein 3-like [Bos
taurus].
Length = 145
Score = 223 bits (568), Expect = 1e-58
Identities = 112/146 (76%), Positives = 126/146 (86%), Gaps = 1/146 (0%)
Frame = +1
Query: 70 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 246
MNC SQP FTGAHG PP YE+LKEEHEVAVLG PQ+ APV TTVINI SETSVP+H+VW
Sbjct: 1 MNCTSQPLFTGAHGVVPPAYEVLKEEHEVAVLGVPQSQAPVTTTVINICSETSVPNHIVW 60
Query: 247 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIA 426
LFNT+FMNWCCLGFVAFAYSV++RDRKMVGDI GAQ Y STAKCLNI ALVLGLLLII
Sbjct: 61 FLFNTIFMNWCCLGFVAFAYSVESRDRKMVGDITGAQRYTSTAKCLNICALVLGLLLIIV 120
Query: 427 FIIVCTTGSLVIFQAVLQLIKDYRGY 504
II+ + GSL+I QAVL+LI++Y G+
Sbjct: 121 LIIM-SIGSLMIVQAVLELIQNYGGH 145
>ref|XP_598998.1| PREDICTED: interferon induced transmembrane protein 3-like [Bos
taurus].
Length = 145
Score = 223 bits (568), Expect = 1e-58
Identities = 112/146 (76%), Positives = 126/146 (86%), Gaps = 1/146 (0%)
Frame = +1
Query: 70 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 246
MNC SQP FTGAHG PP YE+LKEEHEVAVLG PQ+ APV TTVINI SETSVP+H+VW
Sbjct: 1 MNCTSQPLFTGAHGVVPPAYEVLKEEHEVAVLGVPQSQAPVTTTVINICSETSVPNHIVW 60
Query: 247 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIA 426
LFNT+FMNWCCLGFVAFAYSV++RDRKMVGDI GAQ Y STAKCLNI ALVLGLLLII
Sbjct: 61 FLFNTIFMNWCCLGFVAFAYSVESRDRKMVGDITGAQRYTSTAKCLNICALVLGLLLIIV 120
Query: 427 FIIVCTTGSLVIFQAVLQLIKDYRGY 504
II+ + GSL+I QAVL+LI++Y G+
Sbjct: 121 LIIM-SIGSLMIVQAVLELIQNYGGH 145
>ref|XP_001253014.1| PREDICTED: interferon-induced transmembrane protein 3 (1-8U)-like
[Bos taurus].
Length = 146
Score = 222 bits (566), Expect = 2e-58
Identities = 107/146 (73%), Positives = 127/146 (86%), Gaps = 1/146 (0%)
Frame = +1
Query: 70 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 246
MN SQ TGAHG PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1 MNRTSQLLLTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60
Query: 247 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIA 426
SLFNT+FMNWCCLGFVAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI +LVLG+LL +
Sbjct: 61 SLFNTIFMNWCCLGFVAFAYSVKSRDRKMVGDITGAQSYASTAKCLNICSLVLGILLTVV 120
Query: 427 FIIVCTTGSLVIFQAVLQLIKDYRGY 504
I++ +TGSL+I QAV +L+++Y G+
Sbjct: 121 LIVLVSTGSLMIVQAVSELMQNYGGH 146
>ref|NP_863657.1| interferon-induced transmembrane protein 3 (1-8U) [Bos taurus].
Length = 146
Score = 220 bits (561), Expect = 6e-58
Identities = 106/146 (72%), Positives = 126/146 (86%), Gaps = 1/146 (0%)
Frame = +1
Query: 70 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 246
MN SQ TGAHG PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1 MNRTSQLLLTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60
Query: 247 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIA 426
SLFNT+FMNWCCLGFVAFAYSVK+RDRKMVGDI GAQSYASTAKCLNI +LVLG+LL +
Sbjct: 61 SLFNTIFMNWCCLGFVAFAYSVKSRDRKMVGDITGAQSYASTAKCLNICSLVLGILLTVV 120
Query: 427 FIIVCTTGSLVIFQAVLQLIKDYRGY 504
I++ + GSL+I QAV +L+++Y G+
Sbjct: 121 LIVLVSNGSLMIVQAVSELMQNYGGH 146
>ref|NP_001071610.1| interferon-induced transmembrane protein 1 (9-27) isoform 1 [Bos
taurus].
Length = 124
Score = 184 bits (467), Expect = 5e-47
Identities = 85/118 (72%), Positives = 102/118 (86%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
M+KEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VWSLFNT+F+NWCCLGFVAFAYS
Sbjct: 1 MIKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVWSLFNTIFLNWCCLGFVAFAYS 60
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTTGSLVIFQAVLQL 483
VK+RDRKMVGDI GAQSYASTAKCLNIWALVLG+ L I I++ + ++ L++
Sbjct: 61 VKSRDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGSIVLLIFVYMAAYETALRI 118
>ref|NP_001071522.1| interferon induced transmembrane protein 2 (1-8D) [Bos taurus].
Length = 124
Score = 179 bits (453), Expect = 2e-45
Identities = 85/118 (72%), Positives = 99/118 (83%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
MLKEE+EVAVLGAPQ+ APV TTVINI E SVPDH+VWSLFNT+F+NWCCLGFVAFAYS
Sbjct: 1 MLKEENEVAVLGAPQSQAPVTTTVINIPRENSVPDHIVWSLFNTVFLNWCCLGFVAFAYS 60
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTTGSLVIFQAVLQL 483
VK+RDRKMVGDI GAQSYASTAKCLNIWALVLG+ L I I++ + ++ L++
Sbjct: 61 VKSRDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGSIVLLIFVYMAAYETALRI 118
>ref|XP_869835.2| PREDICTED: interferon induced transmembrane protein 2 (1-8D)-like
[Bos taurus].
Length = 238
Score = 150 bits (380), Expect = 6e-37
Identities = 74/107 (69%), Positives = 85/107 (79%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
M E EVAV+G P SAP+ VINI++E DH+VWSLFNTLFMN CCLGFVAF YS
Sbjct: 1 MFSGEQEVAVMGGPAGSAPMKNAVINIQTENPGRDHIVWSLFNTLFMNICCLGFVAFDYS 60
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTTG 450
V+++D+KMVGDI GAQS+ASTAKCLN+WALVLGLLL I FI V TG
Sbjct: 61 VESKDQKMVGDITGAQSHASTAKCLNVWALVLGLLLTITFITVFGTG 107
>ref|XP_002707847.1| PREDICTED: inteferon-induced membrane protein Leu-13/9-27-like [Bos
taurus].
Length = 214
Score = 146 bits (369), Expect = 1e-35
Identities = 73/107 (68%), Positives = 83/107 (77%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
M E EVAV G Q P+ VINI++E DH+VWSLFNTLFMN CCLGFVAFAYS
Sbjct: 1 MFSGEQEVAVTGDLQARXPMKNAVINIQTENPGRDHIVWSLFNTLFMNICCLGFVAFAYS 60
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTTG 450
V+++D+KMVGDI GAQS+ASTAKCLN+WALVLGLLL I FI V TG
Sbjct: 61 VESKDQKMVGDITGAQSHASTAKCLNVWALVLGLLLTITFITVFGTG 107
>ref|XP_002684045.1| PREDICTED: interferon-induced transmembrane protein 3 (1-8U)-like
[Bos taurus].
Length = 96
Score = 141 bits (356), Expect = 4e-34
Identities = 66/83 (79%), Positives = 73/83 (87%), Gaps = 1/83 (1%)
Frame = +1
Query: 70 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 246
MN SQ TGAHG PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1 MNRTSQLLLTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60
Query: 247 SLFNTLFMNWCCLGFVAFAYSVK 315
SLFNT+FMNWCCLGFVAFAYSVK
Sbjct: 61 SLFNTIFMNWCCLGFVAFAYSVK 83
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,104,994
Number of extensions: 750811
Number of successful extensions: 3095
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3076
Number of HSP's successfully gapped: 15
Length of query: 206
Length of database: 17,681,374
Length adjustment: 97
Effective length of query: 109
Effective length of database: 14,471,838
Effective search space: 1577430342
Effective search space used: 1577430342
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002380
(619 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533144.2| PREDICTED: similar to Interferon-induced transm... 167 7e-42
Alignment gi|XP_540516.1| PREDICTED: similar to Interferon-induced transm... 158 4e-39
Alignment gi|XP_540515.2| PREDICTED: similar to Interferon-induced transm... 149 2e-36
Alignment gi|XP_848464.1| PREDICTED: similar to IFITM5 [Canis familiaris]. 129 2e-30
Alignment gi|XP_848556.1| PREDICTED: similar to interferon induced transm... 117 8e-27
Alignment gi|XP_854310.1| PREDICTED: similar to Interferon-inducible prot... 80 1e-15
Alignment gi|XP_536539.2| PREDICTED: similar to olfactory receptor 973 [C... 72 3e-13
>ref|XP_533144.2| PREDICTED: similar to Interferon-induced transmembrane protein 3
(Interferon-inducible protein 1-8U) [Canis familiaris].
Length = 219
Score = 167 bits (423), Expect = 7e-42
Identities = 92/162 (56%), Positives = 112/162 (69%)
Frame = +1
Query: 19 QSTPAHPLSRPQLLLGTMNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATT 198
Q TP+ P SRP L T A FF G H EM+ +++V V GAP ++AP TT
Sbjct: 62 QPTPSLPSSRPHQLWATQPPAL--FFPG-HACASPREMM--QNKVDVRGAPLSTAPATTT 116
Query: 199 VINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAK 378
VIN+ ET VPDHVVWSLFNT+F+NW CLGFVAF YSVKARDRKMVGD+ GAQS+ASTA+
Sbjct: 117 VINVPVETVVPDHVVWSLFNTIFLNWFCLGFVAFVYSVKARDRKMVGDLTGAQSFASTAR 176
Query: 379 CLNIWALVLGLLLIIAFIIVCTTGSLVIFQAVLQLIKDYRGY 504
CLNIWALVLGLLL I I++ + A+LQ +++ Y
Sbjct: 177 CLNIWALVLGLLLTIISIVLLGMAYAAAYGALLQAMQESGRY 218
>ref|XP_540516.1| PREDICTED: similar to Interferon-induced transmembrane protein 1
(Interferon-induced protein 17) (Interferon-inducible
protein 9-27) (Leu-13 antigen) (CD225 antigen) [Canis
familiaris].
Length = 126
Score = 158 bits (399), Expect = 4e-39
Identities = 76/125 (60%), Positives = 99/125 (79%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
M +++++V GAPQ+ PV TTVINIRS+T VPDH+VWSLFNT+FMNWCCLG VAFAYS
Sbjct: 1 MDQDQYKVPETGAPQSMVPVTTTVINIRSDTVVPDHIVWSLFNTVFMNWCCLGIVAFAYS 60
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTTGSLVIFQAVLQLIK 489
VKARDRKMVGD+ GAQS+ASTA+CLNI ALV+G++L I I++ + A+LQ+++
Sbjct: 61 VKARDRKMVGDLTGAQSFASTARCLNISALVVGIILGIISIVLLRIAFGAAYWALLQVMQ 120
Query: 490 DYRGY 504
+ Y
Sbjct: 121 ERSRY 125
>ref|XP_540515.2| PREDICTED: similar to Interferon-induced transmembrane protein 3
(Interferon-inducible protein 1-8U) [Canis familiaris].
Length = 165
Score = 149 bits (376), Expect = 2e-36
Identities = 82/132 (62%), Positives = 97/132 (73%)
Frame = +1
Query: 28 PAHPLSRPQLLLGTMNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVIN 207
PA P SRP LL T A FF G H EM+ +++V V GA ++AP TTVIN
Sbjct: 15 PALPSSRPHLLGATWPPAL--FFPG-HACASPREMM--QNKVDVRGALLSTAPATTTVIN 69
Query: 208 IRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLN 387
+ ET VPDHVVWSLFNT+F+N CLGFVAF YSVKARDRKMVGD+ GAQS+ASTA+CLN
Sbjct: 70 VPEETVVPDHVVWSLFNTIFLNSFCLGFVAFVYSVKARDRKMVGDLTGAQSFASTARCLN 129
Query: 388 IWALVLGLLLII 423
IWALVLG++ I+
Sbjct: 130 IWALVLGIISIV 141
>ref|XP_848464.1| PREDICTED: similar to IFITM5 [Canis familiaris].
Length = 136
Score = 129 bits (324), Expect = 2e-30
Identities = 73/134 (54%), Positives = 85/134 (63%), Gaps = 5/134 (3%)
Frame = +1
Query: 70 MNCASQPFFTGAHG-GPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 246
M+ A +P GA GPPTYEMLKEEHEV VLG+ VPDHVVW
Sbjct: 1 MSRAPRPLLPGARAAGPPTYEMLKEEHEVVVLGSGL-----------------VPDHVVW 43
Query: 247 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNI----WALVLGLL 414
SLFNT+FMNWCCLGFVAFAYS KARD+K+ GD+ A+ + S AKC NI WALV LL
Sbjct: 44 SLFNTVFMNWCCLGFVAFAYSEKARDQKVAGDLEAARRFGSKAKCYNILATMWALVPPLL 103
Query: 415 LIIAFIIVCTTGSL 456
L+ + TG+L
Sbjct: 104 LLALVV----TGAL 113
>ref|XP_848556.1| PREDICTED: similar to interferon induced transmembrane protein 1
(9-27) [Canis familiaris].
Length = 79
Score = 117 bits (293), Expect = 8e-27
Identities = 53/78 (67%), Positives = 66/78 (84%)
Frame = +1
Query: 268 MNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTT 447
MNWC GF+AF+YSVK RDRKM GD+ GAQS+ASTA+CLNIWALVLGLLL + F+I+ +T
Sbjct: 1 MNWCGRGFMAFSYSVKTRDRKMAGDLTGAQSFASTARCLNIWALVLGLLLTVTFVILVST 60
Query: 448 GSLVIFQAVLQLIKDYRG 501
GSLVIF+ V +++K Y G
Sbjct: 61 GSLVIFETVSEMVKHYGG 78
>ref|XP_854310.1| PREDICTED: similar to Interferon-inducible protein [Canis
familiaris].
Length = 274
Score = 80.1 bits (196), Expect = 1e-15
Identities = 53/160 (33%), Positives = 76/160 (47%), Gaps = 24/160 (15%)
Frame = +1
Query: 28 PAHPLSRPQLLLGTMNCASQPFFTGAHGGP---------------PTYEMLKEEHEVAVL 162
P P P+ G C S+P A P P + V
Sbjct: 109 PRPPAGSPK---GCFACVSKPPALQAPAAPAPEPSASPPMAPTLFPMESKSSKTDSVRAS 165
Query: 163 GAPQTSAPVA--------TTVINIRSETS-VPDHVVWSLFNTLFMNWCCLGFVAFAYSVK 315
GAPQ +A TTVI + +T+ V D+ +WS+FN +++N+CCLGF+A AYS+K
Sbjct: 166 GAPQACKHLAEKKTMTNPTTVIEVYPDTTEVNDYYLWSIFNFVYLNFCCLGFIALAYSLK 225
Query: 316 ARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFII 435
RD+K++ D+ GA A TA+ NI + L II +I
Sbjct: 226 VRDKKLLNDLNGAVEDAKTARLFNITSSALAASCIILVLI 265
>ref|XP_536539.2| PREDICTED: similar to olfactory receptor 973 [Canis familiaris].
Length = 370
Score = 72.4 bits (176), Expect = 3e-13
Identities = 28/37 (75%), Positives = 34/37 (91%)
Frame = +1
Query: 226 VPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMV 336
+PDH+ WSLFNT+F+NWCCLGF AFAYSVK+R RK+V
Sbjct: 1 MPDHIFWSLFNTIFLNWCCLGFAAFAYSVKSRGRKLV 37
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,075,345
Number of extensions: 757158
Number of successful extensions: 2979
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2968
Number of HSP's successfully gapped: 7
Length of query: 206
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 108
Effective length of database: 15,607,576
Effective search space: 1685618208
Effective search space used: 1685618208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002380
(619 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_066362.2| interferon-induced transmembrane protein 3 [Hom... 192 1e-49
Alignment gi|NP_003632.3| interferon-induced transmembrane protein 1 [Hom... 191 4e-49
Alignment gi|NP_006426.2| interferon-induced transmembrane protein 2 [Hom... 182 3e-46
Alignment gi|NP_001020466.1| interferon-induced transmembrane protein 5 [... 87 9e-18
Alignment gi|NP_001164291.2| interferon-induced transmembrane protein 10 ... 78 7e-15
Alignment gi|NP_660282.2| proline-rich transmembrane protein 2 [Homo sapi... 48 8e-06
>ref|NP_066362.2| interferon-induced transmembrane protein 3 [Homo sapiens].
Length = 133
Score = 192 bits (489), Expect = 1e-49
Identities = 96/135 (71%), Positives = 111/135 (82%), Gaps = 1/135 (0%)
Frame = +1
Query: 70 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 246
MN Q FF+ + G PP YEMLKEEHEVAVLGAP AP +TVI+IRSETSVPDHVVW
Sbjct: 1 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW 60
Query: 247 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIA 426
SLFNTLFMN CCLGF+AFAYSVK+RDRKMVGD+ GAQ+YASTAKCLNIWAL+LG+L+ I
Sbjct: 61 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL 120
Query: 427 FIIVCTTGSLVIFQA 471
I++ ++IFQA
Sbjct: 121 LIVI----PVLIFQA 131
>ref|NP_003632.3| interferon-induced transmembrane protein 1 [Homo sapiens].
Length = 125
Score = 191 bits (485), Expect = 4e-49
Identities = 88/125 (70%), Positives = 108/125 (86%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
M KEEHEVAVLGAP ++ +TVINI SETSVPDHVVWSLFNTLF+NWCCLGF+AFAYS
Sbjct: 1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS 60
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTTGSLVIFQAVLQLIK 489
VK+RDRKMVGD+ GAQ+YASTAKCLNIWAL+LG+L+ I FI++ GS+ ++ +LQ+I+
Sbjct: 61 VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ 120
Query: 490 DYRGY 504
+ RGY
Sbjct: 121 EKRGY 125
>ref|NP_006426.2| interferon-induced transmembrane protein 2 [Homo sapiens].
Length = 132
Score = 182 bits (461), Expect = 3e-46
Identities = 88/123 (71%), Positives = 99/123 (80%)
Frame = +1
Query: 70 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 249
MN Q F G PP YEMLKEE EVA+LG P AP +TVI+IRSETSVPDHVVWS
Sbjct: 1 MNHIVQTFSPVNSGQPPNYEMLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVWS 60
Query: 250 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAF 429
LFNTLFMN CCLGF+AFAYSVK+RDRKMVGD+ GAQ+YASTAKCLNIWAL+LG+ + I
Sbjct: 61 LFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGIFMTILL 120
Query: 430 IIV 438
II+
Sbjct: 121 III 123
>ref|NP_001020466.1| interferon-induced transmembrane protein 5 [Homo sapiens].
Length = 132
Score = 87.4 bits (215), Expect = 9e-18
Identities = 44/90 (48%), Positives = 61/90 (67%), Gaps = 5/90 (5%)
Frame = +1
Query: 166 APQTSAPVATTVINIRSETSVP-DHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGD 342
AP S A T + + + P DH++WS+F+TL++N CCLGF+A AYS+KARD+K+VGD
Sbjct: 12 APTPSKAGAHTALTLGAPHPPPRDHLIWSVFSTLYLNLCCLGFLALAYSIKARDQKVVGD 71
Query: 343 IIGAQSYASTAKCLNI----WALVLGLLLI 420
+ A+ + S AKC NI W LV LLL+
Sbjct: 72 LEAARRFGSKAKCYNILAAMWTLVPPLLLL 101
>ref|NP_001164291.2| interferon-induced transmembrane protein 10 [Homo sapiens].
Length = 228
Score = 77.8 bits (190), Expect = 7e-15
Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Frame = +1
Query: 103 AHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETS-VPDHVVWSLFNTLFMNWC 279
A G PP + L E+ + TTVI + +T+ V D+ +WS+FN +++N+C
Sbjct: 118 AAGAPPACKHLAEKKTMTN----------PTTVIEVYPDTTEVNDYYLWSIFNFVYLNFC 167
Query: 280 CLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFII 435
CLGF+A AYS+K RD+K++ D+ GA A TA+ NI + L II I
Sbjct: 168 CLGFIALAYSLKVRDKKLLNDLNGAVEDAKTARLFNITSSALAASCIILVFI 219
>ref|NP_660282.2| proline-rich transmembrane protein 2 [Homo sapiens].
Length = 340
Score = 47.8 bits (112), Expect = 8e-06
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Frame = +1
Query: 103 AHGGPP-TYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVP------------DHVV 243
A+G PP + L EE + + +P + + S+ + P D+++
Sbjct: 211 ANGAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYII 270
Query: 244 WSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLII 423
++ + W + VAFAY+V +R+ GD+ GAQ AK L+I ALV G+L+II
Sbjct: 271 LAILSCFCPMWP-VNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIII 329
Query: 424 AFIIV 438
A ++
Sbjct: 330 ASCVI 334
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,539,162
Number of extensions: 744849
Number of successful extensions: 3012
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3004
Number of HSP's successfully gapped: 6
Length of query: 206
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 108
Effective length of database: 15,066,692
Effective search space: 1627202736
Effective search space used: 1627202736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002380
(619 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079654.1| interferon-induced transmembrane protein 3 [Mus... 174 4e-44
Alignment gi|XP_910503.1| PREDICTED: interferon-induced transmembrane pro... 173 8e-44
Alignment gi|NP_109619.1| interferon-induced transmembrane protein 2 [Mus... 173 1e-43
Alignment gi|XP_357752.4| PREDICTED: interferon-induced transmembrane pro... 154 5e-38
Alignment gi|XP_920076.2| PREDICTED: interferon-induced transmembrane pro... 154 5e-38
Alignment gi|NP_083244.1| interferon induced transmembrane protein 7 [Mus... 137 5e-33
Alignment gi|NP_001106186.1| interferon-induced transmembrane protein 1 [... 137 6e-33
Alignment gi|NP_081096.3| interferon-induced transmembrane protein 1 [Mus... 137 6e-33
Alignment gi|NP_001028804.1| interferon induced transmembrane protein 6 [... 118 4e-27
Alignment gi|NP_444318.1| interferon-induced transmembrane protein 5 [Mus... 80 9e-16
>ref|NP_079654.1| interferon-induced transmembrane protein 3 [Mus musculus].
Length = 137
Score = 174 bits (442), Expect = 4e-44
Identities = 85/123 (69%), Positives = 100/123 (81%), Gaps = 1/123 (0%)
Frame = +1
Query: 70 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 246
MN SQ F T A GG PP YE +KEE+EVA +GAP SA V TTVIN+ E SVPDHVVW
Sbjct: 1 MNHTSQAFITAASGGQPPNYERIKEEYEVAEMGAPHGSASVRTTVINMPREVSVPDHVVW 60
Query: 247 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIA 426
SLFNTLFMN+CCLGF+A+AYSVK+RDRKMVGD+ GAQ+YASTAKCLNI LVL +L+++
Sbjct: 61 SLFNTLFMNFCCLGFIAYAYSVKSRDRKMVGDVTGAQAYASTAKCLNISTLVLSILMVVI 120
Query: 427 FII 435
I+
Sbjct: 121 TIV 123
>ref|XP_910503.1| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
musculus].
Length = 144
Score = 173 bits (439), Expect = 8e-44
Identities = 84/137 (61%), Positives = 106/137 (77%)
Frame = +1
Query: 70 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 249
M+ SQ F + G PP+YE +KEE+ V LG P SA V TTVIN+ E SVPDHVVWS
Sbjct: 1 MSHNSQAFLSTNAGLPPSYETIKEEYRVTELGEPSNSAVVRTTVINMPREVSVPDHVVWS 60
Query: 250 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAF 429
LFNTLF N CCLGF+A+AYSVK+RDRKMVGD++GAQ+YASTAKCLNI +L+ +L++I
Sbjct: 61 LFNTLFFNACCLGFIAYAYSVKSRDRKMVGDVVGAQAYASTAKCLNISSLIFSILMVIIC 120
Query: 430 IIVCTTGSLVIFQAVLQ 480
II+ +T S+V+FQ+ Q
Sbjct: 121 IIIFSTTSVVVFQSFAQ 137
>ref|NP_109619.1| interferon-induced transmembrane protein 2 [Mus musculus].
Length = 144
Score = 173 bits (438), Expect = 1e-43
Identities = 85/137 (62%), Positives = 106/137 (77%)
Frame = +1
Query: 70 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 249
M+ SQ F + G PP+YE +KEE+ V LG P SA V TTVIN+ E SVPDHVVWS
Sbjct: 1 MSHNSQAFLSTNAGLPPSYETIKEEYGVTELGEPSNSAVVRTTVINMPREVSVPDHVVWS 60
Query: 250 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAF 429
LFNTLF N CCLGFVA+AYSVK+RDRKMVGD++GAQ+YASTAKCLNI +L+ +L++I
Sbjct: 61 LFNTLFFNACCLGFVAYAYSVKSRDRKMVGDVVGAQAYASTAKCLNISSLIFSILMVIIC 120
Query: 430 IIVCTTGSLVIFQAVLQ 480
II+ +T S+V+FQ+ Q
Sbjct: 121 IIIFSTTSVVVFQSFAQ 137
>ref|XP_357752.4| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
musculus].
Length = 211
Score = 154 bits (389), Expect = 5e-38
Identities = 79/137 (57%), Positives = 99/137 (72%)
Frame = +1
Query: 70 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 249
M+ SQ F G PP+YE +KEE+ V LG P SA V TTVIN+ E SVPDHV WS
Sbjct: 1 MSHNSQAFLPTNAGLPPSYETIKEEYGVTELGEPNNSAAVRTTVINMPREVSVPDHVAWS 60
Query: 250 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAF 429
LF+TLF N CCLGF A+AYS RDRKMVGD+IGAQ++ASTAKCLNI +L+ +L++I
Sbjct: 61 LFSTLFFNACCLGFAAYAYS---RDRKMVGDVIGAQAHASTAKCLNISSLIFSILMVIIC 117
Query: 430 IIVCTTGSLVIFQAVLQ 480
II+ + S+V+FQ+ Q
Sbjct: 118 IIIFSITSVVVFQSFSQ 134
>ref|XP_920076.2| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
musculus].
Length = 211
Score = 154 bits (389), Expect = 5e-38
Identities = 79/137 (57%), Positives = 99/137 (72%)
Frame = +1
Query: 70 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 249
M+ SQ F G PP+YE +KEE+ V LG P SA V TTVIN+ E SVPDHV WS
Sbjct: 1 MSHNSQAFLPTNAGLPPSYETIKEEYGVTELGEPNNSAAVRTTVINMPREVSVPDHVAWS 60
Query: 250 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAF 429
LF+TLF N CCLGF A+AYS RDRKMVGD+IGAQ++ASTAKCLNI +L+ +L++I
Sbjct: 61 LFSTLFFNACCLGFAAYAYS---RDRKMVGDVIGAQAHASTAKCLNISSLIFSILMVIIC 117
Query: 430 IIVCTTGSLVIFQAVLQ 480
II+ + S+V+FQ+ Q
Sbjct: 118 IIIFSITSVVVFQSFSQ 134
>ref|NP_083244.1| interferon induced transmembrane protein 7 [Mus musculus].
Length = 107
Score = 137 bits (346), Expect = 5e-33
Identities = 65/106 (61%), Positives = 84/106 (79%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
M K++HEV V+G P TS TT+I + E S PD+VVWSLFNTLFMN+CCLGF+A+AYS
Sbjct: 1 MPKDQHEVVVMGTPHTSTSSTTTIITM-PEISKPDYVVWSLFNTLFMNFCCLGFIAYAYS 59
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTT 447
VK+RDRKMVGD+ GAQ++ASTA+CLNI L+L ++++I FI T
Sbjct: 60 VKSRDRKMVGDMTGAQAFASTARCLNISCLILSVVMVILFITFFAT 105
>ref|NP_001106186.1| interferon-induced transmembrane protein 1 [Mus musculus].
Length = 106
Score = 137 bits (345), Expect = 6e-33
Identities = 68/104 (65%), Positives = 79/104 (75%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
M KE+ EV VLG+P S T IN+ E S PDHVVWSLFNTLFMN+CCLGFVA+AYS
Sbjct: 1 MPKEQQEVVVLGSPHISTSATATTINM-PEISTPDHVVWSLFNTLFMNFCCLGFVAYAYS 59
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVC 441
VK+RDRKMVGD GAQ++ASTAKCLNI +L +L I I+VC
Sbjct: 60 VKSRDRKMVGDTTGAQAFASTAKCLNISSLFFTILTAIVVIVVC 103
>ref|NP_081096.3| interferon-induced transmembrane protein 1 [Mus musculus].
Length = 106
Score = 137 bits (345), Expect = 6e-33
Identities = 68/104 (65%), Positives = 79/104 (75%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
M KE+ EV VLG+P S T IN+ E S PDHVVWSLFNTLFMN+CCLGFVA+AYS
Sbjct: 1 MPKEQQEVVVLGSPHISTSATATTINM-PEISTPDHVVWSLFNTLFMNFCCLGFVAYAYS 59
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVC 441
VK+RDRKMVGD GAQ++ASTAKCLNI +L +L I I+VC
Sbjct: 60 VKSRDRKMVGDTTGAQAFASTAKCLNISSLFFTILTAIVVIVVC 103
>ref|NP_001028804.1| interferon induced transmembrane protein 6 [Mus musculus].
Length = 104
Score = 118 bits (295), Expect = 4e-27
Identities = 55/87 (63%), Positives = 69/87 (79%)
Frame = +1
Query: 178 SAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQ 357
SAPV +TV+ I S+ PDH+ WS FNT+FMN CCLGF+A+ YSVK+RDRKMVGD+ GAQ
Sbjct: 8 SAPVPSTVVCINSDVIQPDHITWSTFNTVFMNGCCLGFIAYIYSVKSRDRKMVGDMTGAQ 67
Query: 358 SYASTAKCLNIWALVLGLLLIIAFIIV 438
S+ASTAK LNI ALV+ L+ I I++
Sbjct: 68 SHASTAKILNILALVISLIFYIMLIVL 94
>ref|NP_444318.1| interferon-induced transmembrane protein 5 [Mus musculus].
Length = 134
Score = 80.5 bits (197), Expect = 9e-16
Identities = 39/82 (47%), Positives = 57/82 (69%), Gaps = 5/82 (6%)
Frame = +1
Query: 190 ATTVINIRSETSVP-DHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYA 366
A T +++ + P DH++WS+F+T+++N CCLGF+A +SVKARD+KM G++ A+ Y
Sbjct: 22 AHTALSMGTPGPTPRDHMLWSVFSTMYLNLCCLGFLALVHSVKARDQKMAGNLEAARQYG 81
Query: 367 STAKCLNI----WALVLGLLLI 420
S AKC NI W LV LLL+
Sbjct: 82 SKAKCYNILAAMWTLVPPLLLL 103
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,539,210
Number of extensions: 615099
Number of successful extensions: 2600
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2586
Number of HSP's successfully gapped: 12
Length of query: 206
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 109
Effective length of database: 12,704,067
Effective search space: 1384743303
Effective search space used: 1384743303
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002380
(619 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001188311.1| interferon-induced transmembrane protein 3 [... 296 6e-81
Alignment gi|XP_003354459.1| PREDICTED: interferon-induced transmembrane ... 204 4e-53
Alignment gi|XP_003354458.1| PREDICTED: interferon-induced transmembrane ... 204 4e-53
Alignment gi|XP_003354457.1| PREDICTED: interferon-induced transmembrane ... 204 4e-53
Alignment gi|XP_003354456.1| PREDICTED: interferon-induced transmembrane ... 204 4e-53
Alignment gi|XP_003354463.1| PREDICTED: interferon-induced transmembrane ... 202 2e-52
Alignment gi|XP_003124283.1| PREDICTED: interferon-induced transmembrane ... 196 6e-51
Alignment gi|XP_003124278.1| PREDICTED: interferon-induced transmembrane ... 181 3e-46
Alignment gi|XP_003354470.1| PREDICTED: interferon-induced transmembrane ... 176 1e-44
Alignment gi|XP_003353695.1| PREDICTED: interferon-induced transmembrane ... 170 6e-43
>ref|NP_001188311.1| interferon-induced transmembrane protein 3 [Sus scrofa].
Length = 145
Score = 296 bits (758), Expect = 6e-81
Identities = 145/145 (100%), Positives = 145/145 (100%)
Frame = +1
Query: 70 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 249
MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS
Sbjct: 1 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 60
Query: 250 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAF 429
LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAF
Sbjct: 61 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAF 120
Query: 430 IIVCTTGSLVIFQAVLQLIKDYRGY 504
IIVCTTGSLVIFQAVLQLIKDYRGY
Sbjct: 121 IIVCTTGSLVIFQAVLQLIKDYRGY 145
>ref|XP_003354459.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
4 [Sus scrofa].
Length = 125
Score = 204 bits (518), Expect = 4e-53
Identities = 99/125 (79%), Positives = 107/125 (85%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTTGSLVIFQAVLQLIK 489
VKARDRKMVGDIIGAQSYASTAKCLNIWALVLG+ L I + + + +++ LQ K
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 490 DYRGY 504
RGY
Sbjct: 121 SNRGY 125
>ref|XP_003354458.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
3 [Sus scrofa].
Length = 125
Score = 204 bits (518), Expect = 4e-53
Identities = 99/125 (79%), Positives = 107/125 (85%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTTGSLVIFQAVLQLIK 489
VKARDRKMVGDIIGAQSYASTAKCLNIWALVLG+ L I + + + +++ LQ K
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 490 DYRGY 504
RGY
Sbjct: 121 SNRGY 125
>ref|XP_003354457.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
2 [Sus scrofa].
Length = 125
Score = 204 bits (518), Expect = 4e-53
Identities = 99/125 (79%), Positives = 107/125 (85%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTTGSLVIFQAVLQLIK 489
VKARDRKMVGDIIGAQSYASTAKCLNIWALVLG+ L I + + + +++ LQ K
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 490 DYRGY 504
RGY
Sbjct: 121 SNRGY 125
>ref|XP_003354456.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
1 [Sus scrofa].
Length = 125
Score = 204 bits (518), Expect = 4e-53
Identities = 99/125 (79%), Positives = 107/125 (85%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTTGSLVIFQAVLQLIK 489
VKARDRKMVGDIIGAQSYASTAKCLNIWALVLG+ L I + + + +++ LQ K
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 490 DYRGY 504
RGY
Sbjct: 121 SNRGY 125
>ref|XP_003354463.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
scrofa].
Length = 125
Score = 202 bits (513), Expect = 2e-52
Identities = 98/125 (78%), Positives = 106/125 (84%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTTGSLVIFQAVLQLIK 489
VKARDRKMVGDI GAQSYASTAKCLNIWALVLG+ L I + + + +++ LQ K
Sbjct: 61 VKARDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 490 DYRGY 504
RGY
Sbjct: 121 SNRGY 125
>ref|XP_003124283.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
scrofa].
Length = 124
Score = 196 bits (499), Expect = 6e-51
Identities = 98/125 (78%), Positives = 106/125 (84%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTTGSLVIFQAVLQLIK 489
VKARDRKMVGDIIGAQSYASTAKCLNIWALVLG+ L I + + + + +L+ K
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFAYITAYH-MLERAK 119
Query: 490 DYRGY 504
RGY
Sbjct: 120 SNRGY 124
>ref|XP_003124278.1| PREDICTED: interferon-induced transmembrane protein 1 [Sus scrofa].
Length = 124
Score = 181 bits (459), Expect = 3e-46
Identities = 89/125 (71%), Positives = 102/125 (81%)
Frame = +1
Query: 130 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 309
M+K +HE+ LGAPQTSAPVATTVI I ETSVPDH+VWSLFNTLF+NWCCLGFVAFAYS
Sbjct: 1 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 60
Query: 310 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTTGSLVIFQAVLQLIK 489
VKARDRKMVGDIIGAQSYASTAKCLNIWAL+LGL+L I ++ + + +L+ K
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALILGLILTIGATVLLVFVYITAYH-MLERAK 119
Query: 490 DYRGY 504
RGY
Sbjct: 120 SNRGY 124
>ref|XP_003354470.1| PREDICTED: interferon-induced transmembrane protein 3-like, partial
[Sus scrofa].
Length = 82
Score = 176 bits (445), Expect = 1e-44
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +1
Query: 70 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 249
MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS
Sbjct: 1 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 60
Query: 250 LFNTLFMNWCCLGFVAFAYSVK 315
LFNTLFMNWCCLGFVAFAYSVK
Sbjct: 61 LFNTLFMNWCCLGFVAFAYSVK 82
>ref|XP_003353695.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
scrofa].
Length = 207
Score = 170 bits (430), Expect = 6e-43
Identities = 82/130 (63%), Positives = 98/130 (75%)
Frame = +1
Query: 115 PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFV 294
P + + +KEE EVA +G P+ SAP+ +TVI I ET DHVVWSLF+TLF+NWCCLGFV
Sbjct: 78 PHSQDTVKEEQEVAEMGPPEGSAPMTSTVITIPRETPHRDHVVWSLFSTLFLNWCCLGFV 137
Query: 295 AFAYSVKARDRKMVGDIIGAQSYASTAKCLNIWALVLGLLLIIAFIIVCTTGSLVIFQAV 474
AFAYSVKARDRKMVGDI GAQSYASTAKCLNIWALVLG+ L I + + + +++
Sbjct: 138 AFAYSVKARDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMA 197
Query: 475 LQLIKDYRGY 504
LQ K RGY
Sbjct: 198 LQHAKSNRGY 207
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,361,082
Number of extensions: 503709
Number of successful extensions: 2006
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 2000
Number of HSP's successfully gapped: 15
Length of query: 206
Length of database: 11,343,932
Length adjustment: 94
Effective length of query: 112
Effective length of database: 9,003,614
Effective search space: 1008404768
Effective search space used: 1008404768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002380
(619 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 626 e-177
Sscrofa_Chr01 180 6e-43
>Sscrofa_Chr02
|| Length = 162569375
Score = 626 bits (316), Expect = e-177
Identities = 316/316 (100%)
Strand = Plus / Minus
Query: 1 tcgaaactactggggaaacagagcacccctgcacatcccctctccagaccacagcttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072576 tcgaaactactggggaaacagagcacccctgcacatcccctctccagaccacagcttctc 162072517
Query: 61 ctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatggaggaccccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072516 ctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatggaggaccccca 162072457
Query: 121 acatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072456 acatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctca 162072397
Query: 181 gcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072396 gcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtc 162072337
Query: 241 gtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072336 gtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttc 162072277
Query: 301 gcctactccgtgaagg 316
||||||||||||||||
Sbjct: 162072276 gcctactccgtgaagg 162072261
Score = 618 bits (312), Expect = e-175
Identities = 315/316 (99%)
Strand = Plus / Plus
Query: 1 tcgaaactactggggaaacagagcacccctgcacatcccctctccagaccacagcttctc 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 162353104 tcgaaactactggggaaacagagcaccccggcacatcccctctccagaccacagcttctc 162353163
Query: 61 ctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatggaggaccccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353164 ctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatggaggaccccca 162353223
Query: 121 acatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353224 acatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctca 162353283
Query: 181 gcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353284 gcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtc 162353343
Query: 241 gtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353344 gtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttc 162353403
Query: 301 gcctactccgtgaagg 316
||||||||||||||||
Sbjct: 162353404 gcctactccgtgaagg 162353419
Score = 363 bits (183), Expect = 7e-98
Identities = 189/191 (98%)
Strand = Plus / Minus
Query: 126 tgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 185
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077819 tgagatgctcagggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 162077760
Query: 186 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077759 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 162077700
Query: 246 gtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 305
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077699 gtccctgttcaacgccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 162077640
Query: 306 ctccgtgaagg 316
|||||||||||
Sbjct: 162077639 ctccgtgaagg 162077629
Score = 363 bits (183), Expect = 7e-98
Identities = 189/191 (98%)
Strand = Plus / Plus
Query: 126 tgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 185
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095466 tgagatgctcagggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 162095525
Query: 186 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095526 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 162095585
Query: 246 gtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 305
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095586 gtccctgttcaacgccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 162095645
Query: 306 ctccgtgaagg 316
|||||||||||
Sbjct: 162095646 ctccgtgaagg 162095656
Score = 363 bits (183), Expect = 7e-98
Identities = 189/191 (98%)
Strand = Plus / Minus
Query: 126 tgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 185
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340860 tgagatgctcagggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 162340801
Query: 186 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340800 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 162340741
Query: 246 gtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 305
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340740 gtccctgttcaacgccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 162340681
Query: 306 ctccgtgaagg 316
|||||||||||
Sbjct: 162340680 ctccgtgaagg 162340670
Score = 274 bits (138), Expect = 5e-71
Identities = 165/174 (94%)
Strand = Plus / Minus
Query: 143 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 202
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100273 agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 162100214
Query: 203 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacaccc 262
||| ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 162100213 tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 162100154
Query: 263 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 316
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100153 tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162100100
Score = 274 bits (138), Expect = 5e-71
Identities = 165/174 (94%)
Strand = Plus / Plus
Query: 143 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 202
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333181 agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 162333240
Query: 203 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacaccc 262
||| ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 162333241 tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 162333300
Query: 263 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 316
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333301 tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162333354
Score = 200 bits (101), Expect = 6e-49
Identities = 104/105 (99%)
Strand = Plus / Minus
Query: 314 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162102703 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162102644
Query: 374 ccaagtgcctgaacatctgggctctggtcctgggcctccttctga 418
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 162102643 ccaagtgcctgaacatctgggctctggtcctgggcctcattctga 162102599
Score = 192 bits (97), Expect = 2e-46
Identities = 103/105 (98%)
Strand = Plus / Minus
Query: 314 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162099479 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162099420
Query: 374 ccaagtgcctgaacatctgggctctggtcctgggcctccttctga 418
|||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 162099419 ccaagtgcctgaacatctgggctctgatcctgggcctcattctga 162099375
Score = 188 bits (95), Expect = 2e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 314 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162076993 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162076934
Query: 374 ccaagtgcctgaacatctgggctctggtcctgggc 408
|||||||||||||||||||||||||||||||||||
Sbjct: 162076933 ccaagtgcctgaacatctgggctctggtcctgggc 162076899
Score = 188 bits (95), Expect = 2e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 314 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096290 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162096349
Query: 374 ccaagtgcctgaacatctgggctctggtcctgggc 408
|||||||||||||||||||||||||||||||||||
Sbjct: 162096350 ccaagtgcctgaacatctgggctctggtcctgggc 162096384
Score = 180 bits (91), Expect = 6e-43
Identities = 94/95 (98%)
Strand = Plus / Minus
Query: 314 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 373
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162335771 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 162335712
Query: 374 ccaagtgcctgaacatctgggctctggtcctgggc 408
|||||||||||||||||||||||||||||||||||
Sbjct: 162335711 ccaagtgcctgaacatctgggctctggtcctgggc 162335677
Score = 180 bits (91), Expect = 6e-43
Identities = 94/95 (98%)
Strand = Plus / Minus
Query: 314 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 373
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162340035 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 162339976
Query: 374 ccaagtgcctgaacatctgggctctggtcctgggc 408
|||||||||||||||||||||||||||||||||||
Sbjct: 162339975 ccaagtgcctgaacatctgggctctggtcctgggc 162339941
Score = 131 bits (66), Expect = 5e-28
Identities = 78/82 (95%)
Strand = Plus / Minus
Query: 232 gaccacgtcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttc 291
||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 162210286 gaccacgtcctctggtcgctgttcagcaccctcttcctgaactggtgctgcctgggcttc 162210227
Query: 292 gtggctttcgcctactccgtga 313
||||||||||||||||||||||
Sbjct: 162210226 gtggctttcgcctactccgtga 162210205
>Sscrofa_Chr01
|| Length = 315321322
Score = 180 bits (91), Expect = 6e-43
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 314 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 373
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 296331142 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 296331201
Query: 374 ccaagtgcctgaacatctgggctctggtcctgggc 408
|||||||||||||||||||||||||||||||||||
Sbjct: 296331202 ccaagtgcctgaacatctgggctctggtcctgggc 296331236
Score = 149 bits (75), Expect = 2e-33
Identities = 156/183 (85%)
Strand = Plus / Plus
Query: 134 tcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccccgtggcca 193
||||||||||||| |||||||||| | ||||| | ||| | ||||| ||| || |||
Sbjct: 296330323 tcaaggaggagcaggaggtggccgagatggggccgcccgaaggttcagctcccatgacca 296330382
Query: 194 ccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgt 253
||||||||||| ||||| || |||||| || | ||||||||||||||||| ||||
Sbjct: 296330383 gcacggtgatcaccatccccagggagaccccccaccgggaccacgtcgtctggtcgctgt 296330442
Query: 254 tcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtga 313
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296330443 tcagcaccctcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtga 296330502
Query: 314 agg 316
|||
Sbjct: 296330503 agg 296330505
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 16,886,508
Number of extensions: 454
Number of successful extensions: 454
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 16
Length of query: 619
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 598
Effective length of database: 2,808,413,156
Effective search space: 1679431067288
Effective search space used: 1679431067288
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)