Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002382
(1253 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071609.1| interferon induced transmembrane family memb... 195 8e-50
Alignment gi|NP_863657.1| interferon-induced transmembrane protein 3 (1-8... 189 6e-48
Alignment gi|XP_001253014.1| PREDICTED: interferon-induced transmembrane ... 189 6e-48
Alignment gi|XP_002697369.1| PREDICTED: interferon induced transmembrane ... 188 1e-47
Alignment gi|XP_598998.1| PREDICTED: interferon induced transmembrane pro... 188 1e-47
Alignment gi|NP_001071610.1| interferon-induced transmembrane protein 1 (... 178 8e-45
Alignment gi|NP_001071522.1| interferon induced transmembrane protein 2 (... 173 3e-43
Alignment gi|XP_002684045.1| PREDICTED: interferon-induced transmembrane ... 141 1e-33
Alignment gi|XP_869835.2| PREDICTED: interferon induced transmembrane pro... 131 1e-30
Alignment gi|XP_002707847.1| PREDICTED: inteferon-induced membrane protei... 127 3e-29
>ref|NP_001071609.1| interferon induced transmembrane family member [Bos taurus].
Length = 146
Score = 195 bits (495), Expect = 8e-50
Identities = 92/108 (85%), Positives = 100/108 (92%), Gaps = 1/108 (0%)
Frame = +1
Query: 79 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 255
MN SQP FTGAHG PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1 MNRTSQPLFTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60
Query: 256 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNI 399
SLFNT+FMNWCCLGFVAFAYSVK+RDRKMVGDITGAQSYASTAKCLNI
Sbjct: 61 SLFNTIFMNWCCLGFVAFAYSVKSRDRKMVGDITGAQSYASTAKCLNI 108
>ref|NP_863657.1| interferon-induced transmembrane protein 3 (1-8U) [Bos taurus].
Length = 146
Score = 189 bits (479), Expect = 6e-48
Identities = 90/108 (83%), Positives = 98/108 (90%), Gaps = 1/108 (0%)
Frame = +1
Query: 79 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 255
MN SQ TGAHG PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1 MNRTSQLLLTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60
Query: 256 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNI 399
SLFNT+FMNWCCLGFVAFAYSVK+RDRKMVGDITGAQSYASTAKCLNI
Sbjct: 61 SLFNTIFMNWCCLGFVAFAYSVKSRDRKMVGDITGAQSYASTAKCLNI 108
>ref|XP_001253014.1| PREDICTED: interferon-induced transmembrane protein 3 (1-8U)-like
[Bos taurus].
Length = 146
Score = 189 bits (479), Expect = 6e-48
Identities = 90/108 (83%), Positives = 98/108 (90%), Gaps = 1/108 (0%)
Frame = +1
Query: 79 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 255
MN SQ TGAHG PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1 MNRTSQLLLTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60
Query: 256 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNI 399
SLFNT+FMNWCCLGFVAFAYSVK+RDRKMVGDITGAQSYASTAKCLNI
Sbjct: 61 SLFNTIFMNWCCLGFVAFAYSVKSRDRKMVGDITGAQSYASTAKCLNI 108
>ref|XP_002697369.1| PREDICTED: interferon induced transmembrane protein 3-like [Bos
taurus].
Length = 145
Score = 188 bits (477), Expect = 1e-47
Identities = 89/108 (82%), Positives = 96/108 (88%), Gaps = 1/108 (0%)
Frame = +1
Query: 79 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 255
MNC SQP FTGAHG PP YE+LKEEHEVAVLG PQ+ APV TTVINI SETSVP+H+VW
Sbjct: 1 MNCTSQPLFTGAHGVVPPAYEVLKEEHEVAVLGVPQSQAPVTTTVINICSETSVPNHIVW 60
Query: 256 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNI 399
LFNT+FMNWCCLGFVAFAYSV++RDRKMVGDITGAQ Y STAKCLNI
Sbjct: 61 FLFNTIFMNWCCLGFVAFAYSVESRDRKMVGDITGAQRYTSTAKCLNI 108
>ref|XP_598998.1| PREDICTED: interferon induced transmembrane protein 3-like [Bos
taurus].
Length = 145
Score = 188 bits (477), Expect = 1e-47
Identities = 89/108 (82%), Positives = 96/108 (88%), Gaps = 1/108 (0%)
Frame = +1
Query: 79 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 255
MNC SQP FTGAHG PP YE+LKEEHEVAVLG PQ+ APV TTVINI SETSVP+H+VW
Sbjct: 1 MNCTSQPLFTGAHGVVPPAYEVLKEEHEVAVLGVPQSQAPVTTTVINICSETSVPNHIVW 60
Query: 256 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNI 399
LFNT+FMNWCCLGFVAFAYSV++RDRKMVGDITGAQ Y STAKCLNI
Sbjct: 61 FLFNTIFMNWCCLGFVAFAYSVESRDRKMVGDITGAQRYTSTAKCLNI 108
>ref|NP_001071610.1| interferon-induced transmembrane protein 1 (9-27) isoform 1 [Bos
taurus].
Length = 124
Score = 178 bits (452), Expect = 8e-45
Identities = 84/124 (67%), Positives = 97/124 (78%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
M+KEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VWSLFNT+F+NWCCLGFVAFAYS
Sbjct: 1 MIKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVWSLFNTIFLNWCCLGFVAFAYS 60
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKN 498
VK+RDRKMVGDITGAQSYASTAKCLNIW FVY+ AY+ R
Sbjct: 61 VKSRDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGSIVLLIFVYMAAYETALRISR 120
Query: 499 NRGY 510
+ G+
Sbjct: 121 HGGH 124
>ref|NP_001071522.1| interferon induced transmembrane protein 2 (1-8D) [Bos taurus].
Length = 124
Score = 173 bits (438), Expect = 3e-43
Identities = 84/124 (67%), Positives = 94/124 (75%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
MLKEE+EVAVLGAPQ+ APV TTVINI E SVPDH+VWSLFNT+F+NWCCLGFVAFAYS
Sbjct: 1 MLKEENEVAVLGAPQSQAPVTTTVINIPRENSVPDHIVWSLFNTVFLNWCCLGFVAFAYS 60
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKN 498
VK+RDRKMVGDITGAQSYASTAKCLNIW FVY+ AY+ R
Sbjct: 61 VKSRDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGSIVLLIFVYMAAYETALRISR 120
Query: 499 NRGY 510
+ G+
Sbjct: 121 HGGH 124
>ref|XP_002684045.1| PREDICTED: interferon-induced transmembrane protein 3 (1-8U)-like
[Bos taurus].
Length = 96
Score = 141 bits (356), Expect = 1e-33
Identities = 66/83 (79%), Positives = 73/83 (87%), Gaps = 1/83 (1%)
Frame = +1
Query: 79 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 255
MN SQ TGAHG PP YE+LKEEHEVAVLGAPQ+ AP+ TTVINIRS+T+VPDH+VW
Sbjct: 1 MNRTSQLLLTGAHGAVPPAYEVLKEEHEVAVLGAPQSQAPLTTTVINIRSDTAVPDHIVW 60
Query: 256 SLFNTLFMNWCCLGFVAFAYSVK 324
SLFNT+FMNWCCLGFVAFAYSVK
Sbjct: 61 SLFNTIFMNWCCLGFVAFAYSVK 83
>ref|XP_869835.2| PREDICTED: interferon induced transmembrane protein 2 (1-8D)-like
[Bos taurus].
Length = 238
Score = 131 bits (329), Expect = 1e-30
Identities = 61/88 (69%), Positives = 72/88 (81%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
M E EVAV+G P SAP+ VINI++E DH+VWSLFNTLFMN CCLGFVAF YS
Sbjct: 1 MFSGEQEVAVMGGPAGSAPMKNAVINIQTENPGRDHIVWSLFNTLFMNICCLGFVAFDYS 60
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNIW 402
V+++D+KMVGDITGAQS+ASTAKCLN+W
Sbjct: 61 VESKDQKMVGDITGAQSHASTAKCLNVW 88
>ref|XP_002707847.1| PREDICTED: inteferon-induced membrane protein Leu-13/9-27-like [Bos
taurus].
Length = 214
Score = 127 bits (318), Expect = 3e-29
Identities = 60/88 (68%), Positives = 70/88 (79%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
M E EVAV G Q P+ VINI++E DH+VWSLFNTLFMN CCLGFVAFAYS
Sbjct: 1 MFSGEQEVAVTGDLQARXPMKNAVINIQTENPGRDHIVWSLFNTLFMNICCLGFVAFAYS 60
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNIW 402
V+++D+KMVGDITGAQS+ASTAKCLN+W
Sbjct: 61 VESKDQKMVGDITGAQSHASTAKCLNVW 88
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,552,830
Number of extensions: 1649512
Number of successful extensions: 7680
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 7597
Number of HSP's successfully gapped: 15
Length of query: 417
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 312
Effective length of database: 14,207,134
Effective search space: 4432625808
Effective search space used: 4432625808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002382
(1253 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533144.2| PREDICTED: similar to Interferon-induced transm... 152 8e-37
Alignment gi|XP_540516.1| PREDICTED: similar to Interferon-induced transm... 144 1e-34
Alignment gi|XP_540515.2| PREDICTED: similar to Interferon-induced transm... 139 4e-33
Alignment gi|XP_848464.1| PREDICTED: similar to IFITM5 [Canis familiaris]. 123 4e-28
Alignment gi|XP_854310.1| PREDICTED: similar to Interferon-inducible prot... 78 2e-14
Alignment gi|XP_848556.1| PREDICTED: similar to interferon induced transm... 78 2e-14
Alignment gi|XP_536539.2| PREDICTED: similar to olfactory receptor 973 [C... 72 9e-13
>ref|XP_533144.2| PREDICTED: similar to Interferon-induced transmembrane protein 3
(Interferon-inducible protein 1-8U) [Canis familiaris].
Length = 219
Score = 152 bits (383), Expect = 8e-37
Identities = 85/160 (53%), Positives = 99/160 (61%)
Frame = +1
Query: 28 QSTPAHPLSRPQLLLGTMNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATT 207
Q TP+ P SRP L T A FF G H EM+ +++V V GAP ++AP TT
Sbjct: 62 QPTPSLPSSRPHQLWATQPPAL--FFPG-HACASPREMM--QNKVDVRGAPLSTAPATTT 116
Query: 208 VINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAK 387
VIN+ ET VPDHVVWSLFNT+F+NW CLGFVAF YSVKARDRKMVGD+TGAQS+ASTA+
Sbjct: 117 VINVPVETVVPDHVVWSLFNTIFLNWFCLGFVAFVYSVKARDRKMVGDLTGAQSFASTAR 176
Query: 388 CLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKNNRG 507
CLNIW Y AY L +A G
Sbjct: 177 CLNIWALVLGLLLTIISIVLLGMAYAAAYGALLQAMQESG 216
>ref|XP_540516.1| PREDICTED: similar to Interferon-induced transmembrane protein 1
(Interferon-induced protein 17) (Interferon-inducible
protein 9-27) (Leu-13 antigen) (CD225 antigen) [Canis
familiaris].
Length = 126
Score = 144 bits (364), Expect = 1e-34
Identities = 66/87 (75%), Positives = 78/87 (89%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
M +++++V GAPQ+ PV TTVINIRS+T VPDH+VWSLFNT+FMNWCCLG VAFAYS
Sbjct: 1 MDQDQYKVPETGAPQSMVPVTTTVINIRSDTVVPDHIVWSLFNTVFMNWCCLGIVAFAYS 60
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNI 399
VKARDRKMVGD+TGAQS+ASTA+CLNI
Sbjct: 61 VKARDRKMVGDLTGAQSFASTARCLNI 87
>ref|XP_540515.2| PREDICTED: similar to Interferon-induced transmembrane protein 3
(Interferon-inducible protein 1-8U) [Canis familiaris].
Length = 165
Score = 139 bits (351), Expect = 4e-33
Identities = 77/122 (63%), Positives = 89/122 (72%)
Frame = +1
Query: 37 PAHPLSRPQLLLGTMNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVIN 216
PA P SRP LL T A FF G H EM+ +++V V GA ++AP TTVIN
Sbjct: 15 PALPSSRPHLLGATWPPAL--FFPG-HACASPREMM--QNKVDVRGALLSTAPATTTVIN 69
Query: 217 IRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLN 396
+ ET VPDHVVWSLFNT+F+N CLGFVAF YSVKARDRKMVGD+TGAQS+ASTA+CLN
Sbjct: 70 VPEETVVPDHVVWSLFNTIFLNSFCLGFVAFVYSVKARDRKMVGDLTGAQSFASTARCLN 129
Query: 397 IW 402
IW
Sbjct: 130 IW 131
>ref|XP_848464.1| PREDICTED: similar to IFITM5 [Canis familiaris].
Length = 136
Score = 123 bits (308), Expect = 4e-28
Identities = 63/108 (58%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Frame = +1
Query: 79 MNCASQPFFTGAHG-GPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 255
M+ A +P GA GPPTYEMLKEEHEV VLG+ VPDHVVW
Sbjct: 1 MSRAPRPLLPGARAAGPPTYEMLKEEHEVVVLGSGL-----------------VPDHVVW 43
Query: 256 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNI 399
SLFNT+FMNWCCLGFVAFAYS KARD+K+ GD+ A+ + S AKC NI
Sbjct: 44 SLFNTVFMNWCCLGFVAFAYSEKARDQKVAGDLEAARRFGSKAKCYNI 91
>ref|XP_854310.1| PREDICTED: similar to Interferon-inducible protein [Canis
familiaris].
Length = 274
Score = 77.8 bits (190), Expect = 2e-14
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 24/145 (16%)
Frame = +1
Query: 37 PAHPLSRPQLLLGTMNCASQPFFTGAHGGP---------------PTYEMLKEEHEVAVL 171
P P P+ G C S+P A P P + V
Sbjct: 109 PRPPAGSPK---GCFACVSKPPALQAPAAPAPEPSASPPMAPTLFPMESKSSKTDSVRAS 165
Query: 172 GAPQTSAPVA--------TTVINIRSETS-VPDHVVWSLFNTLFMNWCCLGFVAFAYSVK 324
GAPQ +A TTVI + +T+ V D+ +WS+FN +++N+CCLGF+A AYS+K
Sbjct: 166 GAPQACKHLAEKKTMTNPTTVIEVYPDTTEVNDYYLWSIFNFVYLNFCCLGFIALAYSLK 225
Query: 325 ARDRKMVGDITGAQSYASTAKCLNI 399
RD+K++ D+ GA A TA+ NI
Sbjct: 226 VRDKKLLNDLNGAVEDAKTARLFNI 250
>ref|XP_848556.1| PREDICTED: similar to interferon induced transmembrane protein 1
(9-27) [Canis familiaris].
Length = 79
Score = 77.8 bits (190), Expect = 2e-14
Identities = 33/42 (78%), Positives = 38/42 (90%)
Frame = +1
Query: 277 MNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNIW 402
MNWC GF+AF+YSVK RDRKM GD+TGAQS+ASTA+CLNIW
Sbjct: 1 MNWCGRGFMAFSYSVKTRDRKMAGDLTGAQSFASTARCLNIW 42
>ref|XP_536539.2| PREDICTED: similar to olfactory receptor 973 [Canis familiaris].
Length = 370
Score = 72.4 bits (176), Expect = 9e-13
Identities = 28/37 (75%), Positives = 34/37 (91%)
Frame = +1
Query: 235 VPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMV 345
+PDH+ WSLFNT+F+NWCCLGF AFAYSVK+R RK+V
Sbjct: 1 MPDHIFWSLFNTIFLNWCCLGFAAFAYSVKSRGRKLV 37
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,999,857
Number of extensions: 1586687
Number of successful extensions: 7717
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7658
Number of HSP's successfully gapped: 7
Length of query: 417
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 312
Effective length of database: 15,374,224
Effective search space: 4796757888
Effective search space used: 4796757888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002382
(1253 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_066362.2| interferon-induced transmembrane protein 3 [Hom... 177 2e-44
Alignment gi|NP_006426.2| interferon-induced transmembrane protein 2 [Hom... 169 4e-42
Alignment gi|NP_003632.3| interferon-induced transmembrane protein 1 [Hom... 162 5e-40
Alignment gi|NP_001020466.1| interferon-induced transmembrane protein 5 [... 83 5e-16
Alignment gi|NP_001164291.2| interferon-induced transmembrane protein 10 ... 76 6e-14
>ref|NP_066362.2| interferon-induced transmembrane protein 3 [Homo sapiens].
Length = 133
Score = 177 bits (449), Expect = 2e-44
Identities = 86/109 (78%), Positives = 94/109 (86%), Gaps = 1/109 (0%)
Frame = +1
Query: 79 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 255
MN Q FF+ + G PP YEMLKEEHEVAVLGAP AP +TVI+IRSETSVPDHVVW
Sbjct: 1 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW 60
Query: 256 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNIW 402
SLFNTLFMN CCLGF+AFAYSVK+RDRKMVGD+TGAQ+YASTAKCLNIW
Sbjct: 61 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIW 109
>ref|NP_006426.2| interferon-induced transmembrane protein 2 [Homo sapiens].
Length = 132
Score = 169 bits (429), Expect = 4e-42
Identities = 82/108 (75%), Positives = 89/108 (82%)
Frame = +1
Query: 79 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 258
MN Q F G PP YEMLKEE EVA+LG P AP +TVI+IRSETSVPDHVVWS
Sbjct: 1 MNHIVQTFSPVNSGQPPNYEMLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVWS 60
Query: 259 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNIW 402
LFNTLFMN CCLGF+AFAYSVK+RDRKMVGD+TGAQ+YASTAKCLNIW
Sbjct: 61 LFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIW 108
>ref|NP_003632.3| interferon-induced transmembrane protein 1 [Homo sapiens].
Length = 125
Score = 162 bits (411), Expect = 5e-40
Identities = 81/125 (64%), Positives = 92/125 (73%), Gaps = 1/125 (0%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
M KEEHEVAVLGAP ++ +TVINI SETSVPDHVVWSLFNTLF+NWCCLGF+AFAYS
Sbjct: 1 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVWSLFNTLFLNWCCLGFIAFAYS 60
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQ-MLERAK 495
VK+RDRKMVGD+TGAQ+YASTAKCLNIW F +T Y ML+ +
Sbjct: 61 VKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIGFILLLVFGSVTVYHIMLQIIQ 120
Query: 496 NNRGY 510
RGY
Sbjct: 121 EKRGY 125
>ref|NP_001020466.1| interferon-induced transmembrane protein 5 [Homo sapiens].
Length = 132
Score = 83.2 bits (204), Expect = 5e-16
Identities = 38/76 (50%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Frame = +1
Query: 175 APQTSAPVATTVINIRSETSVP-DHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGD 351
AP S A T + + + P DH++WS+F+TL++N CCLGF+A AYS+KARD+K+VGD
Sbjct: 12 APTPSKAGAHTALTLGAPHPPPRDHLIWSVFSTLYLNLCCLGFLALAYSIKARDQKVVGD 71
Query: 352 ITGAQSYASTAKCLNI 399
+ A+ + S AKC NI
Sbjct: 72 LEAARRFGSKAKCYNI 87
>ref|NP_001164291.2| interferon-induced transmembrane protein 10 [Homo sapiens].
Length = 228
Score = 76.3 bits (186), Expect = 6e-14
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Frame = +1
Query: 112 AHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETS-VPDHVVWSLFNTLFMNWC 288
A G PP + L E+ + TTVI + +T+ V D+ +WS+FN +++N+C
Sbjct: 118 AAGAPPACKHLAEKKTMTN----------PTTVIEVYPDTTEVNDYYLWSIFNFVYLNFC 167
Query: 289 CLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNI 399
CLGF+A AYS+K RD+K++ D+ GA A TA+ NI
Sbjct: 168 CLGFIALAYSLKVRDKKLLNDLNGAVEDAKTARLFNI 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,869,724
Number of extensions: 1539435
Number of successful extensions: 7363
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7306
Number of HSP's successfully gapped: 5
Length of query: 417
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 312
Effective length of database: 14,835,944
Effective search space: 4628814528
Effective search space used: 4628814528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002382
(1253 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079654.1| interferon-induced transmembrane protein 3 [Mus... 166 3e-41
Alignment gi|XP_910503.1| PREDICTED: interferon-induced transmembrane pro... 150 2e-36
Alignment gi|NP_109619.1| interferon-induced transmembrane protein 2 [Mus... 150 3e-36
Alignment gi|XP_357752.4| PREDICTED: interferon-induced transmembrane pro... 133 3e-31
Alignment gi|XP_920076.2| PREDICTED: interferon-induced transmembrane pro... 133 3e-31
Alignment gi|NP_001106186.1| interferon-induced transmembrane protein 1 [... 129 4e-30
Alignment gi|NP_081096.3| interferon-induced transmembrane protein 1 [Mus... 129 4e-30
Alignment gi|NP_083244.1| interferon induced transmembrane protein 7 [Mus... 129 6e-30
Alignment gi|NP_001028804.1| interferon induced transmembrane protein 6 [... 109 4e-24
Alignment gi|NP_444318.1| interferon-induced transmembrane protein 5 [Mus... 76 5e-14
>ref|NP_079654.1| interferon-induced transmembrane protein 3 [Mus musculus].
Length = 137
Score = 166 bits (421), Expect = 3e-41
Identities = 81/108 (75%), Positives = 91/108 (84%), Gaps = 1/108 (0%)
Frame = +1
Query: 79 MNCASQPFFTGAHGG-PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVW 255
MN SQ F T A GG PP YE +KEE+EVA +GAP SA V TTVIN+ E SVPDHVVW
Sbjct: 1 MNHTSQAFITAASGGQPPNYERIKEEYEVAEMGAPHGSASVRTTVINMPREVSVPDHVVW 60
Query: 256 SLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNI 399
SLFNTLFMN+CCLGF+A+AYSVK+RDRKMVGD+TGAQ+YASTAKCLNI
Sbjct: 61 SLFNTLFMNFCCLGFIAYAYSVKSRDRKMVGDVTGAQAYASTAKCLNI 108
>ref|XP_910503.1| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
musculus].
Length = 144
Score = 150 bits (379), Expect = 2e-36
Identities = 73/107 (68%), Positives = 84/107 (78%)
Frame = +1
Query: 79 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 258
M+ SQ F + G PP+YE +KEE+ V LG P SA V TTVIN+ E SVPDHVVWS
Sbjct: 1 MSHNSQAFLSTNAGLPPSYETIKEEYRVTELGEPSNSAVVRTTVINMPREVSVPDHVVWS 60
Query: 259 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNI 399
LFNTLF N CCLGF+A+AYSVK+RDRKMVGD+ GAQ+YASTAKCLNI
Sbjct: 61 LFNTLFFNACCLGFIAYAYSVKSRDRKMVGDVVGAQAYASTAKCLNI 107
>ref|NP_109619.1| interferon-induced transmembrane protein 2 [Mus musculus].
Length = 144
Score = 150 bits (378), Expect = 3e-36
Identities = 74/107 (69%), Positives = 84/107 (78%)
Frame = +1
Query: 79 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 258
M+ SQ F + G PP+YE +KEE+ V LG P SA V TTVIN+ E SVPDHVVWS
Sbjct: 1 MSHNSQAFLSTNAGLPPSYETIKEEYGVTELGEPSNSAVVRTTVINMPREVSVPDHVVWS 60
Query: 259 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNI 399
LFNTLF N CCLGFVA+AYSVK+RDRKMVGD+ GAQ+YASTAKCLNI
Sbjct: 61 LFNTLFFNACCLGFVAYAYSVKSRDRKMVGDVVGAQAYASTAKCLNI 107
>ref|XP_357752.4| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
musculus].
Length = 211
Score = 133 bits (334), Expect = 3e-31
Identities = 68/107 (63%), Positives = 78/107 (72%)
Frame = +1
Query: 79 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 258
M+ SQ F G PP+YE +KEE+ V LG P SA V TTVIN+ E SVPDHV WS
Sbjct: 1 MSHNSQAFLPTNAGLPPSYETIKEEYGVTELGEPNNSAAVRTTVINMPREVSVPDHVAWS 60
Query: 259 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNI 399
LF+TLF N CCLGF A+AYS RDRKMVGD+ GAQ++ASTAKCLNI
Sbjct: 61 LFSTLFFNACCLGFAAYAYS---RDRKMVGDVIGAQAHASTAKCLNI 104
>ref|XP_920076.2| PREDICTED: interferon-induced transmembrane protein 3-like [Mus
musculus].
Length = 211
Score = 133 bits (334), Expect = 3e-31
Identities = 68/107 (63%), Positives = 78/107 (72%)
Frame = +1
Query: 79 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 258
M+ SQ F G PP+YE +KEE+ V LG P SA V TTVIN+ E SVPDHV WS
Sbjct: 1 MSHNSQAFLPTNAGLPPSYETIKEEYGVTELGEPNNSAAVRTTVINMPREVSVPDHVAWS 60
Query: 259 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNI 399
LF+TLF N CCLGF A+AYS RDRKMVGD+ GAQ++ASTAKCLNI
Sbjct: 61 LFSTLFFNACCLGFAAYAYS---RDRKMVGDVIGAQAHASTAKCLNI 104
>ref|NP_001106186.1| interferon-induced transmembrane protein 1 [Mus musculus].
Length = 106
Score = 129 bits (325), Expect = 4e-30
Identities = 63/87 (72%), Positives = 71/87 (81%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
M KE+ EV VLG+P S T IN+ E S PDHVVWSLFNTLFMN+CCLGFVA+AYS
Sbjct: 1 MPKEQQEVVVLGSPHISTSATATTINM-PEISTPDHVVWSLFNTLFMNFCCLGFVAYAYS 59
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNI 399
VK+RDRKMVGD TGAQ++ASTAKCLNI
Sbjct: 60 VKSRDRKMVGDTTGAQAFASTAKCLNI 86
>ref|NP_081096.3| interferon-induced transmembrane protein 1 [Mus musculus].
Length = 106
Score = 129 bits (325), Expect = 4e-30
Identities = 63/87 (72%), Positives = 71/87 (81%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
M KE+ EV VLG+P S T IN+ E S PDHVVWSLFNTLFMN+CCLGFVA+AYS
Sbjct: 1 MPKEQQEVVVLGSPHISTSATATTINM-PEISTPDHVVWSLFNTLFMNFCCLGFVAYAYS 59
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNI 399
VK+RDRKMVGD TGAQ++ASTAKCLNI
Sbjct: 60 VKSRDRKMVGDTTGAQAFASTAKCLNI 86
>ref|NP_083244.1| interferon induced transmembrane protein 7 [Mus musculus].
Length = 107
Score = 129 bits (323), Expect = 6e-30
Identities = 60/87 (68%), Positives = 74/87 (85%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
M K++HEV V+G P TS TT+I + E S PD+VVWSLFNTLFMN+CCLGF+A+AYS
Sbjct: 1 MPKDQHEVVVMGTPHTSTSSTTTIITM-PEISKPDYVVWSLFNTLFMNFCCLGFIAYAYS 59
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNI 399
VK+RDRKMVGD+TGAQ++ASTA+CLNI
Sbjct: 60 VKSRDRKMVGDMTGAQAFASTARCLNI 86
>ref|NP_001028804.1| interferon induced transmembrane protein 6 [Mus musculus].
Length = 104
Score = 109 bits (273), Expect = 4e-24
Identities = 50/71 (70%), Positives = 60/71 (84%)
Frame = +1
Query: 187 SAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQ 366
SAPV +TV+ I S+ PDH+ WS FNT+FMN CCLGF+A+ YSVK+RDRKMVGD+TGAQ
Sbjct: 8 SAPVPSTVVCINSDVIQPDHITWSTFNTVFMNGCCLGFIAYIYSVKSRDRKMVGDMTGAQ 67
Query: 367 SYASTAKCLNI 399
S+ASTAK LNI
Sbjct: 68 SHASTAKILNI 78
>ref|NP_444318.1| interferon-induced transmembrane protein 5 [Mus musculus].
Length = 134
Score = 76.3 bits (186), Expect = 5e-14
Identities = 33/68 (48%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Frame = +1
Query: 199 ATTVINIRSETSVP-DHVVWSLFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYA 375
A T +++ + P DH++WS+F+T+++N CCLGF+A +SVKARD+KM G++ A+ Y
Sbjct: 22 AHTALSMGTPGPTPRDHMLWSVFSTMYLNLCCLGFLALVHSVKARDQKMAGNLEAARQYG 81
Query: 376 STAKCLNI 399
S AKC NI
Sbjct: 82 SKAKCYNI 89
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,249,128
Number of extensions: 1258869
Number of successful extensions: 5836
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 5765
Number of HSP's successfully gapped: 11
Length of query: 417
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 313
Effective length of database: 12,493,815
Effective search space: 3910564095
Effective search space used: 3910564095
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002382
(1253 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001188311.1| interferon-induced transmembrane protein 3 [... 226 2e-59
Alignment gi|XP_003124283.1| PREDICTED: interferon-induced transmembrane ... 204 8e-53
Alignment gi|XP_003354463.1| PREDICTED: interferon-induced transmembrane ... 192 3e-49
Alignment gi|XP_003354459.1| PREDICTED: interferon-induced transmembrane ... 190 1e-48
Alignment gi|XP_003354458.1| PREDICTED: interferon-induced transmembrane ... 190 1e-48
Alignment gi|XP_003354457.1| PREDICTED: interferon-induced transmembrane ... 190 1e-48
Alignment gi|XP_003354456.1| PREDICTED: interferon-induced transmembrane ... 190 1e-48
Alignment gi|XP_003124278.1| PREDICTED: interferon-induced transmembrane ... 190 1e-48
Alignment gi|XP_003354470.1| PREDICTED: interferon-induced transmembrane ... 176 3e-44
Alignment gi|XP_003353695.1| PREDICTED: interferon-induced transmembrane ... 160 1e-39
>ref|NP_001188311.1| interferon-induced transmembrane protein 3 [Sus scrofa].
Length = 145
Score = 226 bits (576), Expect = 2e-59
Identities = 107/108 (99%), Positives = 107/108 (99%)
Frame = +1
Query: 79 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 258
MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS
Sbjct: 1 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 60
Query: 259 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDITGAQSYASTAKCLNIW 402
LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDI GAQSYASTAKCLNIW
Sbjct: 61 LFNTLFMNWCCLGFVAFAYSVKARDRKMVGDIIGAQSYASTAKCLNIW 108
>ref|XP_003124283.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
scrofa].
Length = 124
Score = 204 bits (519), Expect = 8e-53
Identities = 101/124 (81%), Positives = 103/124 (83%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKN 498
VKARDRKMVGDI GAQSYASTAKCLNIW F YITAY MLERAK+
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFAYITAYHMLERAKS 120
Query: 499 NRGY 510
NRGY
Sbjct: 121 NRGY 124
>ref|XP_003354463.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
scrofa].
Length = 125
Score = 192 bits (489), Expect = 3e-49
Identities = 97/125 (77%), Positives = 101/125 (80%), Gaps = 1/125 (0%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 495
VKARDRKMVGDITGAQSYASTAKCLNIW F I Y+M L+ AK
Sbjct: 61 VKARDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 496 NNRGY 510
+NRGY
Sbjct: 121 SNRGY 125
>ref|XP_003354459.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
4 [Sus scrofa].
Length = 125
Score = 190 bits (483), Expect = 1e-48
Identities = 96/125 (76%), Positives = 100/125 (80%), Gaps = 1/125 (0%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 495
VKARDRKMVGDI GAQSYASTAKCLNIW F I Y+M L+ AK
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 496 NNRGY 510
+NRGY
Sbjct: 121 SNRGY 125
>ref|XP_003354458.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
3 [Sus scrofa].
Length = 125
Score = 190 bits (483), Expect = 1e-48
Identities = 96/125 (76%), Positives = 100/125 (80%), Gaps = 1/125 (0%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 495
VKARDRKMVGDI GAQSYASTAKCLNIW F I Y+M L+ AK
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 496 NNRGY 510
+NRGY
Sbjct: 121 SNRGY 125
>ref|XP_003354457.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
2 [Sus scrofa].
Length = 125
Score = 190 bits (483), Expect = 1e-48
Identities = 96/125 (76%), Positives = 100/125 (80%), Gaps = 1/125 (0%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 495
VKARDRKMVGDI GAQSYASTAKCLNIW F I Y+M L+ AK
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 496 NNRGY 510
+NRGY
Sbjct: 121 SNRGY 125
>ref|XP_003354456.1| PREDICTED: interferon-induced transmembrane protein 1-like isoform
1 [Sus scrofa].
Length = 125
Score = 190 bits (483), Expect = 1e-48
Identities = 96/125 (76%), Positives = 100/125 (80%), Gaps = 1/125 (0%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
ML+EEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFN LFMNWCCLGFVAFAYS
Sbjct: 1 MLREEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNALFMNWCCLGFVAFAYS 60
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM-LERAK 495
VKARDRKMVGDI GAQSYASTAKCLNIW F I Y+M L+ AK
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMALQHAK 120
Query: 496 NNRGY 510
+NRGY
Sbjct: 121 SNRGY 125
>ref|XP_003124278.1| PREDICTED: interferon-induced transmembrane protein 1 [Sus scrofa].
Length = 124
Score = 190 bits (483), Expect = 1e-48
Identities = 93/124 (75%), Positives = 99/124 (79%)
Frame = +1
Query: 139 MLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFVAFAYS 318
M+K +HE+ LGAPQTSAPVATTVI I ETSVPDH+VWSLFNTLF+NWCCLGFVAFAYS
Sbjct: 1 MIKSQHEMDGLGAPQTSAPVATTVITIPRETSVPDHIVWSLFNTLFLNWCCLGFVAFAYS 60
Query: 319 VKARDRKMVGDITGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQMLERAKN 498
VKARDRKMVGDI GAQSYASTAKCLNIW FVYITAY MLERAK+
Sbjct: 61 VKARDRKMVGDIIGAQSYASTAKCLNIWALILGLILTIGATVLLVFVYITAYHMLERAKS 120
Query: 499 NRGY 510
NRGY
Sbjct: 121 NRGY 124
>ref|XP_003354470.1| PREDICTED: interferon-induced transmembrane protein 3-like, partial
[Sus scrofa].
Length = 82
Score = 176 bits (445), Expect = 3e-44
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +1
Query: 79 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 258
MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS
Sbjct: 1 MNCASQPFFTGAHGGPPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWS 60
Query: 259 LFNTLFMNWCCLGFVAFAYSVK 324
LFNTLFMNWCCLGFVAFAYSVK
Sbjct: 61 LFNTLFMNWCCLGFVAFAYSVK 82
>ref|XP_003353695.1| PREDICTED: interferon-induced transmembrane protein 1-like [Sus
scrofa].
Length = 207
Score = 160 bits (406), Expect = 1e-39
Identities = 81/130 (62%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
Frame = +1
Query: 124 PPTYEMLKEEHEVAVLGAPQTSAPVATTVINIRSETSVPDHVVWSLFNTLFMNWCCLGFV 303
P + + +KEE EVA +G P+ SAP+ +TVI I ET DHVVWSLF+TLF+NWCCLGFV
Sbjct: 78 PHSQDTVKEEQEVAEMGPPEGSAPMTSTVITIPRETPHRDHVVWSLFSTLFLNWCCLGFV 137
Query: 304 AFAYSVKARDRKMVGDITGAQSYASTAKCLNIWXXXXXXXXXXXXXXXXXFVYITAYQM- 480
AFAYSVKARDRKMVGDITGAQSYASTAKCLNIW F I Y+M
Sbjct: 138 AFAYSVKARDRKMVGDITGAQSYASTAKCLNIWALVLGIFLTIGAVALLVFACIAVYEMA 197
Query: 481 LERAKNNRGY 510
L+ AK+NRGY
Sbjct: 198 LQHAKSNRGY 207
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,122,648
Number of extensions: 1224673
Number of successful extensions: 4978
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4931
Number of HSP's successfully gapped: 14
Length of query: 417
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 316
Effective length of database: 8,829,335
Effective search space: 2790069860
Effective search space used: 2790069860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002382
(1253 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 682 0.0
Sscrofa_Chr01 682 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 682 bits (344), Expect = 0.0
Identities = 360/364 (98%), Gaps = 1/364 (0%)
Strand = Plus / Plus
Query: 577 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096544 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 162096603
Query: 637 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096604 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 162096663
Query: 697 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096664 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 162096723
Query: 757 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162096724 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 162096783
Query: 817 ccaggatggccagggtgtgagtcagttcatatccccgggggcttcctggccccatttcag 876
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 162096784 ccaggatggccagggtgtgagtcagttcatatcccc-ggggcttcctggccccatttcag 162096842
Query: 877 cccctccggtgcatctgaaggggctgaaatgggtggacctccgtgtgtgcaaagtcctcg 936
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 162096843 cccctccggcgcgtctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcg 162096902
Query: 937 tggg 940
||||
Sbjct: 162096903 tggg 162096906
Score = 682 bits (344), Expect = 0.0
Identities = 360/364 (98%), Gaps = 1/364 (0%)
Strand = Plus / Minus
Query: 577 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335514 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 162335455
Query: 637 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335454 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 162335395
Query: 697 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335394 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 162335335
Query: 757 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335334 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 162335275
Query: 817 ccaggatggccagggtgtgagtcagttcatatccccgggggcttcctggccccatttcag 876
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 162335274 ccaggatggccagggtgtgagtcagttcatatcccc-ggggcttcctggccccatttcag 162335216
Query: 877 cccctccggtgcatctgaaggggctgaaatgggtggacctccgtgtgtgcaaagtcctcg 936
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 162335215 cccctccggcgcgtctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcg 162335156
Query: 937 tggg 940
||||
Sbjct: 162335155 tggg 162335152
Score = 644 bits (325), Expect = 0.0
Identities = 325/325 (100%)
Strand = Plus / Plus
Query: 1 gtagagaaatcgaaactactggggaaacagagcaccccggcacatcccctctccagacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353095 gtagagaaatcgaaactactggggaaacagagcaccccggcacatcccctctccagacca 162353154
Query: 61 cagcttctcctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353155 cagcttctcctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatgga 162353214
Query: 121 ggacccccaacatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353215 ggacccccaacatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccc 162353274
Query: 181 cagacctcagcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353275 cagacctcagcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgccc 162353334
Query: 241 gaccacgtcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162353335 gaccacgtcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttc 162353394
Query: 301 gtggctttcgcctactccgtgaagg 325
|||||||||||||||||||||||||
Sbjct: 162353395 gtggctttcgcctactccgtgaagg 162353419
Score = 636 bits (321), Expect = e-180
Identities = 324/325 (99%)
Strand = Plus / Minus
Query: 1 gtagagaaatcgaaactactggggaaacagagcaccccggcacatcccctctccagacca 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 162072585 gtagagaaatcgaaactactggggaaacagagcacccctgcacatcccctctccagacca 162072526
Query: 61 cagcttctcctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072525 cagcttctcctgggcaccatgaactgcgcttcccagcccttcttcactggtgcccatgga 162072466
Query: 121 ggacccccaacatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072465 ggacccccaacatatgagatgctcaaggaggagcacgaggtggccgtgctgggggctccc 162072406
Query: 181 cagacctcagcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072405 cagacctcagcccccgtggccaccacggtgatcaacatccgaagcgagacctccgtgccc 162072346
Query: 241 gaccacgtcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162072345 gaccacgtcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttc 162072286
Query: 301 gtggctttcgcctactccgtgaagg 325
|||||||||||||||||||||||||
Sbjct: 162072285 gtggctttcgcctactccgtgaagg 162072261
Score = 363 bits (183), Expect = 2e-97
Identities = 189/191 (98%)
Strand = Plus / Minus
Query: 135 tgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 194
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077819 tgagatgctcagggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 162077760
Query: 195 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077759 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 162077700
Query: 255 gtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 314
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162077699 gtccctgttcaacgccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 162077640
Query: 315 ctccgtgaagg 325
|||||||||||
Sbjct: 162077639 ctccgtgaagg 162077629
Score = 363 bits (183), Expect = 2e-97
Identities = 189/191 (98%)
Strand = Plus / Plus
Query: 135 tgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 194
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095466 tgagatgctcagggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 162095525
Query: 195 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095526 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 162095585
Query: 255 gtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 314
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162095586 gtccctgttcaacgccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 162095645
Query: 315 ctccgtgaagg 325
|||||||||||
Sbjct: 162095646 ctccgtgaagg 162095656
Score = 363 bits (183), Expect = 2e-97
Identities = 189/191 (98%)
Strand = Plus / Minus
Query: 135 tgagatgctcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 194
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340860 tgagatgctcagggaggagcacgaggtggccgtgctgggggctccccagacctcagcccc 162340801
Query: 195 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340800 cgtggccaccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctg 162340741
Query: 255 gtccctgttcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 314
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340740 gtccctgttcaacgccctcttcatgaactggtgctgcctgggcttcgtggctttcgccta 162340681
Query: 315 ctccgtgaagg 325
|||||||||||
Sbjct: 162340680 ctccgtgaagg 162340670
Score = 359 bits (181), Expect = 2e-96
Identities = 190/193 (98%)
Strand = Plus / Minus
Query: 323 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 382
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162099479 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162099420
Query: 383 ccaagtgcctgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162099419 ccaagtgcctgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 162099360
Query: 443 ttcttctggtgtttgtatacataacagcctaccagatgttagagcgcgcaaagaataaca 502
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 162099359 ttcttctggtgtttgtatacataacagcctaccatatgttagagcgcgcaaagagtaaca 162099300
Query: 503 gaggctactagca 515
|||||||||||||
Sbjct: 162099299 gaggctactagca 162099287
Score = 287 bits (145), Expect = 7e-75
Identities = 181/193 (93%)
Strand = Plus / Plus
Query: 323 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 382
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162096290 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162096349
Query: 383 ccaagtgcctgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 442
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |
Sbjct: 162096350 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162096409
Query: 443 ttcttctggtgtttgtatacataacagcctaccagatgttagagcgcgcaaagaataaca 502
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 162096410 ctcttctggtgtttgcatacataacagcctaccatatgttagagcgcgcaaagagtaaca 162096469
Query: 503 gaggctactagca 515
|||||||||||||
Sbjct: 162096470 gaggctactagca 162096482
Score = 274 bits (138), Expect = 1e-70
Identities = 165/174 (94%)
Strand = Plus / Minus
Query: 152 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 211
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100273 agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 162100214
Query: 212 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacaccc 271
||| ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 162100213 tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 162100154
Query: 272 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 325
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162100153 tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162100100
Score = 274 bits (138), Expect = 1e-70
Identities = 165/174 (94%)
Strand = Plus / Plus
Query: 152 agcacgaggtggccgtgctgggggctccccagacctcagcccccgtggccaccacggtga 211
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333181 agcacgagatggacgggctgggggctccccagacctcagcccccgtggccaccacggtga 162333240
Query: 212 tcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgttcaacaccc 271
||| ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 162333241 tcaccatccccagggagacctccgtgcccgaccacatcgtctggtccctgttcaacaccc 162333300
Query: 272 tcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 325
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162333301 tcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtgaagg 162333354
Score = 266 bits (134), Expect = 3e-68
Identities = 140/142 (98%)
Strand = Plus / Minus
Query: 323 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 382
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162102703 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162102644
Query: 383 ccaagtgcctgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 442
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 162102643 ccaagtgcctgaacatctgggctctggtcctgggcctcattctgaccatcggagccactg 162102584
Query: 443 ttcttctggtgtttgtatacat 464
||||||||||||||||||||||
Sbjct: 162102583 ttcttctggtgtttgtatacat 162102562
Score = 210 bits (106), Expect = 1e-51
Identities = 174/196 (88%), Gaps = 3/196 (1%)
Strand = Plus / Minus
Query: 323 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 382
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 162076993 aggcgagggaccggaagatggtgggagacatcattggggcccagagctatgcctccaccg 162076934
Query: 383 ccaagtgcctgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 442
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |
Sbjct: 162076933 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162076874
Query: 443 ttcttctggtgtttgtatacataacagcctaccagatg---ttagagcgcgcaaagaata 499
|||||||||||||| || |||| ||| |||| ||||| ||| | | ||||||| ||
Sbjct: 162076873 ctcttctggtgtttgcatgcatagcagtctacgagatggctttacaacatgcaaagagta 162076814
Query: 500 acagaggctactagca 515
||||||||||||||||
Sbjct: 162076813 acagaggctactagca 162076798
Score = 210 bits (106), Expect = 1e-51
Identities = 174/196 (88%), Gaps = 3/196 (1%)
Strand = Plus / Minus
Query: 323 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162335771 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 162335712
Query: 383 ccaagtgcctgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 442
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |
Sbjct: 162335711 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162335652
Query: 443 ttcttctggtgtttgtatacataacagcctaccagatg---ttagagcgcgcaaagaata 499
|||||||||||||| || |||| ||| ||| ||||| ||| | | ||||||| ||
Sbjct: 162335651 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 162335592
Query: 500 acagaggctactagca 515
||||||||||||||||
Sbjct: 162335591 acagaggctactagca 162335576
Score = 210 bits (106), Expect = 1e-51
Identities = 174/196 (88%), Gaps = 3/196 (1%)
Strand = Plus / Minus
Query: 323 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162340035 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 162339976
Query: 383 ccaagtgcctgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 442
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |
Sbjct: 162339975 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 162339916
Query: 443 ttcttctggtgtttgtatacataacagcctaccagatg---ttagagcgcgcaaagaata 499
|||||||||||||| || |||| ||| ||| ||||| ||| | | ||||||| ||
Sbjct: 162339915 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 162339856
Query: 500 acagaggctactagca 515
||||||||||||||||
Sbjct: 162339855 acagaggctactagca 162339840
Score = 131 bits (66), Expect = 1e-27
Identities = 78/82 (95%)
Strand = Plus / Minus
Query: 241 gaccacgtcgtctggtccctgttcaacaccctcttcatgaactggtgctgcctgggcttc 300
||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 162210286 gaccacgtcctctggtcgctgttcagcaccctcttcctgaactggtgctgcctgggcttc 162210227
Query: 301 gtggctttcgcctactccgtga 322
||||||||||||||||||||||
Sbjct: 162210226 gtggctttcgcctactccgtga 162210205
>Sscrofa_Chr01
|| Length = 315321322
Score = 682 bits (344), Expect = 0.0
Identities = 360/364 (98%), Gaps = 1/364 (0%)
Strand = Plus / Plus
Query: 577 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331399 ttcctacaggacttgcaaccagggaggcacagattcaagtagcaagagtcccacgtgctc 296331458
Query: 637 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331459 tgaggaaagcagagaggcagggctggggaacacccaccaccaagaccttccagagaagtt 296331518
Query: 697 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331519 acaggctcgccttacagacgggggctggtgccagcagagggtcagtcactaggcatccgc 296331578
Query: 757 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331579 agctgatcggttgccagacccgggtttccagggagggaagaaaccgagttccaggcggtc 296331638
Query: 817 ccaggatggccagggtgtgagtcagttcatatccccgggggcttcctggccccatttcag 876
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 296331639 ccaggatggccagggtgtgagtcagttcatatcccc-ggggcttcctggccccatttcag 296331697
Query: 877 cccctccggtgcatctgaaggggctgaaatgggtggacctccgtgtgtgcaaagtcctcg 936
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 296331698 cccctccggcgcgtctgaaggggctgaaatgggtggacctccgtgtgtgcagagtcctcg 296331757
Query: 937 tggg 940
||||
Sbjct: 296331758 tggg 296331761
Score = 210 bits (106), Expect = 1e-51
Identities = 174/196 (88%), Gaps = 3/196 (1%)
Strand = Plus / Plus
Query: 323 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296331142 aggcgagggaccggaagatggtgggagacatcactggggcccagagctatgcctccaccg 296331201
Query: 383 ccaagtgcctgaacatctgggctctgatcctgggcctcattctgaccatcggagccactg 442
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |
Sbjct: 296331202 ccaagtgcctgaacatctgggctctggtcctgggcatttttctgaccatcggagccgtcg 296331261
Query: 443 ttcttctggtgtttgtatacataacagcctaccagatg---ttagagcgcgcaaagaata 499
|||||||||||||| || |||| ||| ||| ||||| ||| | | ||||||| ||
Sbjct: 296331262 ctcttctggtgtttgcatgcatagcagtctatgagatggctttacaacatgcaaagagta 296331321
Query: 500 acagaggctactagca 515
||||||||||||||||
Sbjct: 296331322 acagaggctactagca 296331337
Score = 149 bits (75), Expect = 4e-33
Identities = 156/183 (85%)
Strand = Plus / Plus
Query: 143 tcaaggaggagcacgaggtggccgtgctgggggctccccagacctcagcccccgtggcca 202
||||||||||||| |||||||||| | ||||| | ||| | ||||| ||| || |||
Sbjct: 296330323 tcaaggaggagcaggaggtggccgagatggggccgcccgaaggttcagctcccatgacca 296330382
Query: 203 ccacggtgatcaacatccgaagcgagacctccgtgcccgaccacgtcgtctggtccctgt 262
||||||||||| ||||| || |||||| || | ||||||||||||||||| ||||
Sbjct: 296330383 gcacggtgatcaccatccccagggagaccccccaccgggaccacgtcgtctggtcgctgt 296330442
Query: 263 tcaacaccctcttcatgaactggtgctgcctgggcttcgtggctttcgcctactccgtga 322
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296330443 tcagcaccctcttcctgaactggtgctgcctgggcttcgtggctttcgcctactccgtga 296330502
Query: 323 agg 325
|||
Sbjct: 296330503 agg 296330505
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,023,650
Number of extensions: 210
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 19
Length of query: 1253
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1232
Effective length of database: 2,808,413,156
Effective search space: 3459965008192
Effective search space used: 3459965008192
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)