Animal-Genome cDNA 20110601C-002388


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002388
         (1036 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029571.1| FXYD domain-containing ion transport regulat...   152   6e-37
Alignment   gi|NP_001069878.1| phospholemman precursor [Bos taurus].              72   8e-13
Alignment   gi|NP_001073114.1| FXYD domain-containing ion transport regulat...    63   4e-10
Alignment   gi|NP_776745.2| sodium/potassium-transporting ATPase subunit ga...    56   5e-08
Alignment   gi|NP_001032716.1| FXYD domain-containing ion transport regulat...    49   7e-06

>ref|NP_001029571.1| FXYD domain-containing ion transport regulator 6 precursor [Bos
           taurus].
          Length = 95

 Score =  152 bits (383), Expect = 6e-37
 Identities = 77/95 (81%), Positives = 80/95 (84%)
 Frame = +1

Query: 82  MEVLLMFXXXXXXXXXXXXXXEQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 261
           MEV+L+F              EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR
Sbjct: 1   MEVVLLFLCGLLAPAVLASATEQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 60

Query: 262 CKCTFNQKPRALGDEEAQVENLVTANATEPQKAEN 366
           CKC+FNQKPRA GDEEAQVENLVTANATEPQKAEN
Sbjct: 61  CKCSFNQKPRAPGDEEAQVENLVTANATEPQKAEN 95


>ref|NP_001069878.1| phospholemman precursor [Bos taurus].
          Length = 92

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 32/57 (56%), Positives = 43/57 (75%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEEAQ 315
           E  +E DPF YDYQ+LRIGGL+ A +LF +GIL++LSRRC+C FNQ+ R    +E +
Sbjct: 21  EAPQEHDPFTYDYQSLRIGGLIIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEE 77


>ref|NP_001073114.1| FXYD domain-containing ion transport regulator 3 [Bos taurus].
          Length = 70

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 24/49 (48%), Positives = 39/49 (79%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPR 291
           + E +  PF+YD+ +LR+GGL+FA +L ++GI++++S +CKC F QKPR
Sbjct: 22  DPEDKNSPFYYDWYSLRVGGLIFAGILCAMGIIVLMSGKCKCKFRQKPR 70


>ref|NP_776745.2| sodium/potassium-transporting ATPase subunit gamma [Bos taurus].
          Length = 64

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 22/52 (42%), Positives = 40/52 (76%)
 Frame = +1

Query: 151 EKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDE 306
           ++ +DPF+YDY+T+R GGL+FA + F VG+++ILS+R +C   ++ R + ++
Sbjct: 11  KENEDPFYYDYETVRNGGLIFAALAFIVGLVIILSKRFRCGAKRQHRQIPED 62


>ref|NP_001032716.1| FXYD domain-containing ion transport regulator 7 [Bos taurus].
          Length = 78

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 19/39 (48%), Positives = 30/39 (76%)
 Frame = +1

Query: 154 KEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKC 270
           ++ DPF+YDY T++  G+  A +LF +GIL+ILS++ KC
Sbjct: 11  QDPDPFYYDYDTVQTVGMTLATILFLLGILIILSKKVKC 49


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,838,973
Number of extensions: 1658770
Number of successful extensions: 9739
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 9381
Number of HSP's successfully gapped: 5
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002388
         (1036 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_853482.1| PREDICTED: similar to FXYD domain-containing io...   144   1e-34
Alignment   gi|NP_001182072.1| phospholemman [Canis lupus familiaris].            72   9e-13
Alignment   gi|NP_001182071.1| phospholemman [Canis lupus familiaris].            72   9e-13
Alignment   gi|XP_855497.1| PREDICTED: similar to FXYD domain-containing io...    62   7e-10
Alignment   gi|XP_860917.1| PREDICTED: similar to FXYD domain-containing io...    59   8e-09
Alignment   gi|XP_860882.1| PREDICTED: similar to FXYD domain-containing io...    59   8e-09
Alignment   gi|XP_850175.1| PREDICTED: similar to FXYD domain-containing io...    59   8e-09
Alignment   gi|XP_860824.1| PREDICTED: similar to FXYD domain-containing io...    59   8e-09

>ref|XP_853482.1| PREDICTED: similar to FXYD domain-containing ion transport
           regulator 6 [Canis familiaris].
          Length = 94

 Score =  144 bits (364), Expect = 1e-34
 Identities = 70/74 (94%), Positives = 72/74 (97%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEEAQVEN 324
           EQE EKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKC+FNQKPRA GDEEAQVEN
Sbjct: 21  EQENEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCSFNQKPRAPGDEEAQVEN 80

Query: 325 LVTANATEPQKAEN 366
           L+TANATEPQKAEN
Sbjct: 81  LITANATEPQKAEN 94


>ref|NP_001182072.1| phospholemman [Canis lupus familiaris].
          Length = 92

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 32/57 (56%), Positives = 43/57 (75%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEEAQ 315
           E  +E DPF YDYQ+LRIGGL+ A +LF +GIL++LSRRC+C FNQ+ R    +E +
Sbjct: 21  EAPQEHDPFTYDYQSLRIGGLIIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEE 77


>ref|NP_001182071.1| phospholemman [Canis lupus familiaris].
          Length = 92

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 32/57 (56%), Positives = 43/57 (75%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEEAQ 315
           E  +E DPF YDYQ+LRIGGL+ A +LF +GIL++LSRRC+C FNQ+ R    +E +
Sbjct: 21  EAPQEHDPFTYDYQSLRIGGLIIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEE 77


>ref|XP_855497.1| PREDICTED: similar to FXYD domain-containing ion transport
           regulator 3 [Canis familiaris].
          Length = 89

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 25/48 (52%), Positives = 38/48 (79%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKP 288
           + E +  PF+YD+Q LRIGGL+ A VL ++GI++++S +CKC F+QKP
Sbjct: 23  DPEDKDSPFYYDWQRLRIGGLICAAVLCTIGIIVLMSGKCKCKFSQKP 70


>ref|XP_860917.1| PREDICTED: similar to FXYD domain-containing ion transport
           regulator 2 isoform 2 isoform 5 [Canis familiaris].
          Length = 64

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 23/53 (43%), Positives = 41/53 (77%)
 Frame = +1

Query: 151 EKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEE 309
           +++ DPF+YDY+T+R GGL+FA + F VG+++ILS+R +C   +K R + +++
Sbjct: 11  KEDVDPFYYDYETVRNGGLIFAALAFVVGLIIILSKRLRCGGKKKHRQVNEDD 63


>ref|XP_860882.1| PREDICTED: similar to FXYD domain-containing ion transport
           regulator 2 isoform 1 isoform 4 [Canis familiaris].
          Length = 61

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 23/53 (43%), Positives = 41/53 (77%)
 Frame = +1

Query: 151 EKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEE 309
           +++ DPF+YDY+T+R GGL+FA + F VG+++ILS+R +C   +K R + +++
Sbjct: 8   KEDVDPFYYDYETVRNGGLIFAALAFVVGLIIILSKRLRCGGKKKHRQVNEDD 60


>ref|XP_850175.1| PREDICTED: similar to FXYD domain-containing ion transport
           regulator 2 isoform 2 isoform 2 [Canis familiaris].
          Length = 64

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 23/53 (43%), Positives = 41/53 (77%)
 Frame = +1

Query: 151 EKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEE 309
           +++ DPF+YDY+T+R GGL+FA + F VG+++ILS+R +C   +K R + +++
Sbjct: 11  KEDVDPFYYDYETVRNGGLIFAALAFVVGLIIILSKRLRCGGKKKHRQVNEDD 63


>ref|XP_860824.1| PREDICTED: similar to FXYD domain-containing ion transport
           regulator 2 isoform 1 isoform 3 [Canis familiaris].
          Length = 61

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 23/53 (43%), Positives = 41/53 (77%)
 Frame = +1

Query: 151 EKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEE 309
           +++ DPF+YDY+T+R GGL+FA + F VG+++ILS+R +C   +K R + +++
Sbjct: 8   KEDVDPFYYDYETVRNGGLIFAALAFVVGLIIILSKRLRCGGKKKHRQVNEDD 60


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,786,822
Number of extensions: 1704665
Number of successful extensions: 9661
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9352
Number of HSP's successfully gapped: 8
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002388
         (1036 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001158309.1| FXYD domain-containing ion transport regulat...   146   3e-35
Alignment   gi|NP_001158308.1| FXYD domain-containing ion transport regulat...   146   3e-35
Alignment   gi|NP_001158304.1| FXYD domain-containing ion transport regulat...   146   3e-35
Alignment   gi|NP_001158303.1| FXYD domain-containing ion transport regulat...   146   3e-35
Alignment   gi|NP_071286.1| FXYD domain-containing ion transport regulator ...   146   3e-35
Alignment   gi|NP_001230527.1| FXYD6-FXYD2 read-through protein isoform 2 p...    74   3e-22
Alignment   gi|NP_001191197.1| FXYD6-FXYD2 read-through protein isoform 1 p...   103   3e-22
Alignment   gi|NP_005022.2| phospholemman precursor [Homo sapiens].               73   5e-13
Alignment   gi|NP_068702.1| phospholemman precursor [Homo sapiens].               73   5e-13
Alignment   gi|NP_001671.2| sodium/potassium-transporting ATPase subunit ga...    62   1e-09

>ref|NP_001158309.1| FXYD domain-containing ion transport regulator 6 precursor [Homo
           sapiens].
          Length = 95

 Score =  146 bits (368), Expect = 3e-35
 Identities = 73/95 (76%), Positives = 79/95 (83%)
 Frame = +1

Query: 82  MEVLLMFXXXXXXXXXXXXXXEQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 261
           ME++L+F              E+EKE DPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR
Sbjct: 1   MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 60

Query: 262 CKCTFNQKPRALGDEEAQVENLVTANATEPQKAEN 366
           CKC+FNQKPRA GDEEAQVENL+TANATEPQKAEN
Sbjct: 61  CKCSFNQKPRAPGDEEAQVENLITANATEPQKAEN 95


>ref|NP_001158308.1| FXYD domain-containing ion transport regulator 6 precursor [Homo
           sapiens].
          Length = 95

 Score =  146 bits (368), Expect = 3e-35
 Identities = 73/95 (76%), Positives = 79/95 (83%)
 Frame = +1

Query: 82  MEVLLMFXXXXXXXXXXXXXXEQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 261
           ME++L+F              E+EKE DPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR
Sbjct: 1   MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 60

Query: 262 CKCTFNQKPRALGDEEAQVENLVTANATEPQKAEN 366
           CKC+FNQKPRA GDEEAQVENL+TANATEPQKAEN
Sbjct: 61  CKCSFNQKPRAPGDEEAQVENLITANATEPQKAEN 95


>ref|NP_001158304.1| FXYD domain-containing ion transport regulator 6 precursor [Homo
           sapiens].
          Length = 95

 Score =  146 bits (368), Expect = 3e-35
 Identities = 73/95 (76%), Positives = 79/95 (83%)
 Frame = +1

Query: 82  MEVLLMFXXXXXXXXXXXXXXEQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 261
           ME++L+F              E+EKE DPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR
Sbjct: 1   MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 60

Query: 262 CKCTFNQKPRALGDEEAQVENLVTANATEPQKAEN 366
           CKC+FNQKPRA GDEEAQVENL+TANATEPQKAEN
Sbjct: 61  CKCSFNQKPRAPGDEEAQVENLITANATEPQKAEN 95


>ref|NP_001158303.1| FXYD domain-containing ion transport regulator 6 precursor [Homo
           sapiens].
          Length = 95

 Score =  146 bits (368), Expect = 3e-35
 Identities = 73/95 (76%), Positives = 79/95 (83%)
 Frame = +1

Query: 82  MEVLLMFXXXXXXXXXXXXXXEQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 261
           ME++L+F              E+EKE DPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR
Sbjct: 1   MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 60

Query: 262 CKCTFNQKPRALGDEEAQVENLVTANATEPQKAEN 366
           CKC+FNQKPRA GDEEAQVENL+TANATEPQKAEN
Sbjct: 61  CKCSFNQKPRAPGDEEAQVENLITANATEPQKAEN 95


>ref|NP_071286.1| FXYD domain-containing ion transport regulator 6 precursor [Homo
           sapiens].
          Length = 95

 Score =  146 bits (368), Expect = 3e-35
 Identities = 73/95 (76%), Positives = 79/95 (83%)
 Frame = +1

Query: 82  MEVLLMFXXXXXXXXXXXXXXEQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 261
           ME++L+F              E+EKE DPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR
Sbjct: 1   MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 60

Query: 262 CKCTFNQKPRALGDEEAQVENLVTANATEPQKAEN 366
           CKC+FNQKPRA GDEEAQVENL+TANATEPQKAEN
Sbjct: 61  CKCSFNQKPRAPGDEEAQVENLITANATEPQKAEN 95


>ref|NP_001230527.1| FXYD6-FXYD2 read-through protein isoform 2 precursor [Homo
           sapiens].
          Length = 112

 Score = 74.3 bits (181), Expect(2) = 3e-22
 Identities = 38/57 (66%), Positives = 42/57 (73%)
 Frame = +1

Query: 82  MEVLLMFXXXXXXXXXXXXXXEQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLIL 252
           ME++L+F              E+EKE DPFHYDYQTLRIGGLVFAVVLFSVGILLIL
Sbjct: 1   MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLIL 57



 Score = 49.7 bits (117), Expect(2) = 3e-22
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = +2

Query: 293 PWATRRPRWRTLSLQMQRSPRKQRTEAQPSGEKK 394
           P   R+PRWRT S  MQ+SPRKQRTE QPSG ++
Sbjct: 59  PQEMRKPRWRTSSPPMQQSPRKQRTEVQPSGGRR 92


>ref|NP_001191197.1| FXYD6-FXYD2 read-through protein isoform 1 precursor [Homo
           sapiens].
          Length = 144

 Score =  103 bits (256), Expect = 3e-22
 Identities = 51/80 (63%), Positives = 59/80 (73%)
 Frame = +1

Query: 82  MEVLLMFXXXXXXXXXXXXXXEQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 261
           ME++L+F              E+EKE DPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR
Sbjct: 1   MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 60

Query: 262 CKCTFNQKPRALGDEEAQVE 321
           CKC+FNQKPR    E  +++
Sbjct: 61  CKCSFNQKPRNRAPESRELK 80



 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 26/49 (53%), Positives = 39/49 (79%)
 Frame = +1

Query: 163 DPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEE 309
           DPF+YDY+T+R GGL+FA + F VG+L++LSRR +C  N+K R + ++E
Sbjct: 95  DPFYYDYETVRNGGLIFAGLAFIVGLLILLSRRFRCGGNKKRRQINEDE 143


>ref|NP_005022.2| phospholemman precursor [Homo sapiens].
          Length = 92

 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 33/57 (57%), Positives = 43/57 (75%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEEAQ 315
           E  KE DPF YDYQ+L+IGGLV A +LF +GIL++LSRRC+C FNQ+ R    +E +
Sbjct: 21  ESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEE 77


>ref|NP_068702.1| phospholemman precursor [Homo sapiens].
          Length = 92

 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 33/57 (57%), Positives = 43/57 (75%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEEAQ 315
           E  KE DPF YDYQ+L+IGGLV A +LF +GIL++LSRRC+C FNQ+ R    +E +
Sbjct: 21  ESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEE 77


>ref|NP_001671.2| sodium/potassium-transporting ATPase subunit gamma isoform 1 [Homo
           sapiens].
          Length = 66

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 26/49 (53%), Positives = 39/49 (79%)
 Frame = +1

Query: 163 DPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEE 309
           DPF+YDY+T+R GGL+FA + F VG+L++LSRR +C  N+K R + ++E
Sbjct: 17  DPFYYDYETVRNGGLIFAGLAFIVGLLILLSRRFRCGGNKKRRQINEDE 65


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,708,296
Number of extensions: 1660807
Number of successful extensions: 9297
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 8983
Number of HSP's successfully gapped: 17
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002388
         (1036 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_071287.1| FXYD domain-containing ion transport regulator ...   139   4e-33
Alignment   gi|NP_443717.1| phospholemman isoform b precursor [Mus musculus].     70   4e-12
Alignment   gi|NP_443718.1| phospholemman isoform b precursor [Mus musculus].     70   4e-12
Alignment   gi|NP_062376.2| phospholemman isoform a precursor [Mus musculus].     70   4e-12
Alignment   gi|NP_919302.1| phospholemman isoform b precursor [Mus musculus].     70   4e-12
Alignment   gi|NP_032583.1| FXYD domain-containing ion transport regulator ...    61   2e-09
Alignment   gi|NP_031529.2| sodium/potassium-transporting ATPase subunit ga...    56   4e-08
Alignment   gi|NP_439888.1| sodium/potassium-transporting ATPase subunit ga...    56   4e-08
Alignment   gi|NP_001166843.1| FXYD domain-containing ion transport regulat...    50   4e-06
Alignment   gi|NP_387468.1| FXYD domain-containing ion transport regulator ...    50   4e-06

>ref|NP_071287.1| FXYD domain-containing ion transport regulator 6 precursor [Mus
           musculus].
          Length = 94

 Score =  139 bits (350), Expect = 4e-33
 Identities = 67/74 (90%), Positives = 71/74 (95%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEEAQVEN 324
           E+EKEKDPF+YDYQTLRIGGLVFAVVLFSVGILLILSRRCKC+FNQKPRA GDEEAQVEN
Sbjct: 21  EKEKEKDPFYYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCSFNQKPRAPGDEEAQVEN 80

Query: 325 LVTANATEPQKAEN 366
           L+T NA EPQKAEN
Sbjct: 81  LITTNAAEPQKAEN 94


>ref|NP_443717.1| phospholemman isoform b precursor [Mus musculus].
          Length = 92

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 32/57 (56%), Positives = 41/57 (71%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEEAQ 315
           E  +E DPF YDY TLRIGGL  A +LF +GIL+ILS+RC+C FNQ+ R    +E +
Sbjct: 21  EAPQEPDPFTYDYHTLRIGGLTIAGILFILGILIILSKRCRCKFNQQQRTGEPDEEE 77


>ref|NP_443718.1| phospholemman isoform b precursor [Mus musculus].
          Length = 92

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 32/57 (56%), Positives = 41/57 (71%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEEAQ 315
           E  +E DPF YDY TLRIGGL  A +LF +GIL+ILS+RC+C FNQ+ R    +E +
Sbjct: 21  EAPQEPDPFTYDYHTLRIGGLTIAGILFILGILIILSKRCRCKFNQQQRTGEPDEEE 77


>ref|NP_062376.2| phospholemman isoform a precursor [Mus musculus].
          Length = 95

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 32/57 (56%), Positives = 41/57 (71%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEEAQ 315
           E  +E DPF YDY TLRIGGL  A +LF +GIL+ILS+RC+C FNQ+ R    +E +
Sbjct: 24  EAPQEPDPFTYDYHTLRIGGLTIAGILFILGILIILSKRCRCKFNQQQRTGEPDEEE 80


>ref|NP_919302.1| phospholemman isoform b precursor [Mus musculus].
          Length = 92

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 32/57 (56%), Positives = 41/57 (71%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEEAQ 315
           E  +E DPF YDY TLRIGGL  A +LF +GIL+ILS+RC+C FNQ+ R    +E +
Sbjct: 21  EAPQEPDPFTYDYHTLRIGGLTIAGILFILGILIILSKRCRCKFNQQQRTGEPDEEE 77


>ref|NP_032583.1| FXYD domain-containing ion transport regulator 3 precursor [Mus
           musculus].
          Length = 88

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 23/48 (47%), Positives = 38/48 (79%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKP 288
           + E + DPF+YD+ +LR+GGL+ A +L ++GI++++S +CKC F QKP
Sbjct: 22  DPENKNDPFYYDWYSLRVGGLICAGILCALGIIVLMSGKCKCKFRQKP 69


>ref|NP_031529.2| sodium/potassium-transporting ATPase subunit gamma isoform a [Mus
           musculus].
          Length = 70

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 24/50 (48%), Positives = 38/50 (76%)
 Frame = +1

Query: 160 KDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEE 309
           ++PF YDY+T+R GGL+FA + F VG+L+ILS+R +C   +K R + ++E
Sbjct: 20  ENPFEYDYETVRKGGLIFAGLAFVVGLLIILSKRFRCGGGKKHRQVNEDE 69


>ref|NP_439888.1| sodium/potassium-transporting ATPase subunit gamma isoform b [Mus
           musculus].
          Length = 64

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 24/50 (48%), Positives = 38/50 (76%)
 Frame = +1

Query: 160 KDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEE 309
           ++PF YDY+T+R GGL+FA + F VG+L+ILS+R +C   +K R + ++E
Sbjct: 14  ENPFEYDYETVRKGGLIFAGLAFVVGLLIILSKRFRCGGGKKHRQVNEDE 63


>ref|NP_001166843.1| FXYD domain-containing ion transport regulator 4 precursor [Mus
           musculus].
          Length = 88

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
 Frame = +1

Query: 157 EKD-PFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRAL 297
           +KD PF+YD+++L++GGL+F  +L   GI + LS +CKC    KP +L
Sbjct: 25  DKDSPFYYDWESLQLGGLIFGGLLCIAGIAMALSGKCKCRRTHKPSSL 72


>ref|NP_387468.1| FXYD domain-containing ion transport regulator 4 precursor [Mus
           musculus].
          Length = 88

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
 Frame = +1

Query: 157 EKD-PFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRAL 297
           +KD PF+YD+++L++GGL+F  +L   GI + LS +CKC    KP +L
Sbjct: 25  DKDSPFYYDWESLQLGGLIFGGLLCIAGIAMALSGKCKCRRTHKPSSL 72


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,774,848
Number of extensions: 1367717
Number of successful extensions: 7666
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7410
Number of HSP's successfully gapped: 10
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002388
         (1036 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003129937.1| PREDICTED: FXYD domain-containing ion transp...   158   4e-39
Alignment   gi|XP_003355899.1| PREDICTED: phospholemman-like isoform 2 [Sus...    72   5e-13
Alignment   gi|XP_003355898.1| PREDICTED: phospholemman-like isoform 1 [Sus...    72   5e-13
Alignment   gi|NP_999373.1| FXYD domain-containing ion transport regulator ...    56   3e-08
Alignment   gi|NP_001014427.1| sodium/potassium-transporting ATPase subunit...    56   3e-08

>ref|XP_003129937.1| PREDICTED: FXYD domain-containing ion transport regulator 6-like
           [Sus scrofa].
          Length = 95

 Score =  158 bits (400), Expect = 4e-39
 Identities = 81/95 (85%), Positives = 81/95 (85%)
 Frame = +1

Query: 82  MEVLLMFXXXXXXXXXXXXXXEQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 261
           MEVLLMF              EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR
Sbjct: 1   MEVLLMFLCSLLAPAVLASAAEQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR 60

Query: 262 CKCTFNQKPRALGDEEAQVENLVTANATEPQKAEN 366
           CKCTFNQKPRALGDEEAQVENLVTANATEPQKAEN
Sbjct: 61  CKCTFNQKPRALGDEEAQVENLVTANATEPQKAEN 95


>ref|XP_003355899.1| PREDICTED: phospholemman-like isoform 2 [Sus scrofa].
          Length = 92

 Score = 72.0 bits (175), Expect = 5e-13
 Identities = 32/57 (56%), Positives = 43/57 (75%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEEAQ 315
           E  +E DPF YDYQ+LRIGGL+ A +LF +GIL++LSRRC+C FNQ+ R    +E +
Sbjct: 21  EAPQEHDPFTYDYQSLRIGGLIIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEE 77


>ref|XP_003355898.1| PREDICTED: phospholemman-like isoform 1 [Sus scrofa].
          Length = 92

 Score = 72.0 bits (175), Expect = 5e-13
 Identities = 32/57 (56%), Positives = 43/57 (75%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEEAQ 315
           E  +E DPF YDYQ+LRIGGL+ A +LF +GIL++LSRRC+C FNQ+ R    +E +
Sbjct: 21  EAPQEHDPFTYDYQSLRIGGLIIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEE 77


>ref|NP_999373.1| FXYD domain-containing ion transport regulator 3 precursor [Sus
           scrofa].
          Length = 88

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 22/48 (45%), Positives = 36/48 (75%)
 Frame = +1

Query: 145 EQEKEKDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKP 288
           + E +  PF+YD+ +LR+GGL+ A    ++GI+++LS +CKC F+QKP
Sbjct: 22  DPEDKNSPFYYDWHSLRVGGLICAGTPCALGIIILLSGKCKCKFSQKP 69


>ref|NP_001014427.1| sodium/potassium-transporting ATPase subunit gamma [Sus scrofa].
          Length = 65

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 24/49 (48%), Positives = 38/49 (77%)
 Frame = +1

Query: 163 DPFHYDYQTLRIGGLVFAVVLFSVGILLILSRRCKCTFNQKPRALGDEE 309
           DPF+YDY+T+R GGL+FA + F VG+++ILS+R +C   +K R + ++E
Sbjct: 17  DPFYYDYETVRNGGLIFAALAFIVGLIIILSKRLRCG-GKKHRPINEDE 64


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,603,263
Number of extensions: 1078772
Number of successful extensions: 6362
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6110
Number of HSP's successfully gapped: 5
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002388
         (1036 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr09                                                        1120   0.0  

>Sscrofa_Chr09 
||          Length = 153670197

 Score = 1120 bits (565), Expect = 0.0
 Identities = 625/648 (96%), Gaps = 2/648 (0%)
 Strand = Plus / Minus

                                                                            
Query: 390      agaagctgaaggcagctgctccaacctttagatgcacatgctgatgcttaagaaaaccga 449
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50263120 agaagctgaaggcagctgctccaacctttagatgcacatgctgatgcttaagaaaaccga 50263061

                                                                            
Query: 450      ccacttcagcaaccaatctttccccaggagaagccaagaacttgtgtgtcccccggctct 509
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50263060 ccacttcagcaaccaatctttccccaggagaagccaagaacttgtgtgtcccccggctct 50263001

                                                                            
Query: 510      ttctccagctcctcaagcacctgttcccaacttaatgatgcaaccctgcctcccccacct 569
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50263000 ttctccagctcctcaagcacctgttcccaacttaatgatgcaaccctgcctcccccacct 50262941

                                                                            
Query: 570      gcagcctgtggtcttgtccatctcctgtgacannnnnnnnnnnnnnnnnccgatgactgt 629
                ||||||||||||||||||||||||||||||||                 |||||||||||
Sbjct: 50262940 gcagcctgtggtcttgtccatctcctgtgacatgtgtgtgtctgtgtgtccgatgactgt 50262881

                                                                            
Query: 630      gatcttcgtggctgcttatttgtgaatgatgttgtgtttagtgcacctggcctctctttc 689
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50262880 gatcttcgtggctgcttatttgtgaatgatgttgtgtttagtgcacctggcctctctttc 50262821

                                                                            
Query: 690      ctgtgcaggagctgggccgtgtggccgtcagcacctccctgctctctgtggccccatcac 749
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50262820 ctgtgcaggagctgggccgtgtggccgtcagcacctccctgctctctgtggccccatcac 50262761

                                                                            
Query: 750      ctcccattcctcggagtctgcttttcccctgagagacctgtcccctctctggatggaggg 809
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50262760 ctcccattcctcggagtctgcttttcccctgagagacctgtcccctctctggatggaggg 50262701

                                                                            
Query: 810      gtgggtgtaagagtcgggcacgggtgggagtctccaggagccttgggccttgggaaggtt 869
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50262700 gtgggtgtaagagtcgggcacgggtgggagtctccaggagccttgggccttgggaaggtt 50262641

                                                                            
Query: 870      tgcatcaccttcagggtccttctgcatggcccctcttcactcttattagactcttgcttc 929
                |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 50262640 tgcatcaccttcagggtccttctgcatggcccctcttcactcttataagactcttgcttc 50262581

                                                                            
Query: 930      cgtattcctccctggaccaattctgctctgaagtctcctggcagtgggaggttcccagca 989
                |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 50262580 cgtattcctccctggaccaagtctgctctgaggtctcctggcagtgggaggttcccagca 50262521

                                                                
Query: 990      agggagctggtga-aacgctttgccctcaggcagcccctttccctgat 1036
                | ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 50262520 a-ggagctggtgagaccgctttgccctcaggcagcccctttccctgat 50262474



 Score =  155 bits (78), Expect = 6e-35
 Identities = 78/78 (100%)
 Strand = Plus / Minus

                                                                            
Query: 178      gattaccagaccctgcggatcgggggattggtgtttgctgtggtcctcttctccgtgggg 237
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50267904 gattaccagaccctgcggatcgggggattggtgtttgctgtggtcctcttctccgtgggg 50267845

                                  
Query: 238      atcctgcttatcctgagt 255
                ||||||||||||||||||
Sbjct: 50267844 atcctgcttatcctgagt 50267827



 Score =  143 bits (72), Expect = 2e-31
 Identities = 75/76 (98%)
 Strand = Plus / Minus

                                                                            
Query: 1        gccccgcgactcccaggctcctccggactcggcacgtcctcctgggattgtctccggagg 60
                ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50296940 gccccgccactcccaggctcctccggactcggcacgtcctcctgggattgtctccggagg 50296881

                                
Query: 61       ggaccgcgctgtgcag 76
                ||||||||||||||||
Sbjct: 50296880 ggaccgcgctgtgcag 50296865



 Score =  131 bits (66), Expect = 8e-28
 Identities = 66/66 (100%)
 Strand = Plus / Minus

                                                                            
Query: 74       cagacgccatggaggtgttgctgatgttcctgtgcagcctgctggcccctgcggtcctgg 133
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50268713 cagacgccatggaggtgttgctgatgttcctgtgcagcctgctggcccctgcggtcctgg 50268654

                      
Query: 134      ccagtg 139
                ||||||
Sbjct: 50268653 ccagtg 50268648



 Score =  103 bits (52), Expect = 2e-19
 Identities = 52/52 (100%)
 Strand = Plus / Minus

                                                                    
Query: 340      gcaacggagccccagaaagcagagaactgaagcgcagccctcaggcgaaaag 391
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50266103 gcaacggagccccagaaagcagagaactgaagcgcagccctcaggcgaaaag 50266052



 Score =  101 bits (51), Expect = 7e-19
 Identities = 51/51 (100%)
 Strand = Plus / Minus

                                                                   
Query: 290      gggccctgggcgacgaggaggcccaggtggagaaccttgtcactgcaaatg 340
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50266689 gggccctgggcgacgaggaggcccaggtggagaaccttgtcactgcaaatg 50266639



 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                        
Query: 139      gcagctgagcaggagaaagaaaaggacccttttcattatg 178
                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 50268069 gcagctgagcaggagaaagaaaaggacccttttcattatg 50268030



 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                      
Query: 254      gtcgcagatgcaagtgcactttcaatcagaagccacgg 291
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 50267268 gtcgcagatgcaagtgcactttcaatcagaagccacgg 50267231


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,333,606
Number of extensions: 254
Number of successful extensions: 254
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 9
Length of query: 1036
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1015
Effective length of database: 2,808,413,156
Effective search space: 2850539353340
Effective search space used: 2850539353340
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)