Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002392
(2120 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029776.1| dolichyl-diphosphooligosaccharide--protein g... 1084 0.0
Alignment gi|XP_001255521.3| PREDICTED: hypothetical protein [Bos taurus]. 95 3e-19
Alignment gi|XP_002692358.1| PREDICTED: hypothetical protein [Bos taurus]. 84 6e-16
>ref|NP_001029776.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit 2 [Bos taurus].
Length = 631
Score = 1084 bits (2803), Expect = 0.0
Identities = 564/622 (90%), Positives = 576/622 (92%)
Frame = +3
Query: 255 MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 434
MA PGSSTV LLALTIIAS QALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS
Sbjct: 1 MALPGSSTVFLLALTIIASTQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 60
Query: 435 LGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDS 614
LGAQVPD KKACTFIKSNLDPSNVDSLFY AQSSQALSGCEISISNETKDLLLAAVSEDS
Sbjct: 61 LGAQVPDVKKACTFIKSNLDPSNVDSLFYAAQSSQALSGCEISISNETKDLLLAAVSEDS 120
Query: 615 SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 794
SV QIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI
Sbjct: 121 SVAQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 180
Query: 795 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTI 974
VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMN I
Sbjct: 181 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAI 240
Query: 975 FSKKNFESLPEXXXXXXXXXXXXQNRYHXXXXXXXEGSPSDTQEQAFLRLQVTNVLSQPL 1154
FSKKNFESL E +NRYH EGSPS TQEQA LRLQVTNVLSQPL
Sbjct: 241 FSKKNFESLSEAFSVASAAAALSENRYHVPVVVVPEGSPSYTQEQAILRLQVTNVLSQPL 300
Query: 1155 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYIA 1334
TQATVKLEHAKSVASRATVLQKTSFT +GDVFELNF+NVKFSSGYYDFSVKVEGDNRYIA
Sbjct: 301 TQATVKLEHAKSVASRATVLQKTSFTLIGDVFELNFMNVKFSSGYYDFSVKVEGDNRYIA 360
Query: 1335 NTVELRVKISSEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQL 1514
NTVELRVKIS+EVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKG FIADSHQNFALFFQL
Sbjct: 361 NTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQL 420
Query: 1515 VDVNTGAKLTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTYT 1694
VDVNTGA+LTPHQTFVRLHNQKTGQEVVFVAEPDSKNVY+FELDTSERK+EFDSASGTYT
Sbjct: 421 VDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYKFELDTSERKLEFDSASGTYT 480
Query: 1695 LYLIIGDATLKNPIHWNVADVVIRFPKEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTV 1874
LYLIIGDATLKNPI WNVADVVIRFP++D PSTVLSKN+FT KQEIQHLFREPEKRPPTV
Sbjct: 481 LYLIIGDATLKNPILWNVADVVIRFPEDDVPSTVLSKNIFTPKQEIQHLFREPEKRPPTV 540
Query: 1875 VSNTFTAXXXXXXXXXXXXWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF 2054
VSNTFTA WIRIGAN+SNFTFAPSTI+FHLGHAAMLGLMYVYWTQLNMF
Sbjct: 541 VSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIVFHLGHAAMLGLMYVYWTQLNMF 600
Query: 2055 QTLKYLAILGSVTFLAGNRMLA 2120
QTLKYLAILGSVTFLAGNRMLA
Sbjct: 601 QTLKYLAILGSVTFLAGNRMLA 622
>ref|XP_001255521.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 1194
Score = 94.7 bits (234), Expect = 3e-19
Identities = 45/61 (73%), Positives = 53/61 (86%)
Frame = -1
Query: 269 TRRRHSSEQVPLGPEPQADFRSGKWLQERAGGDARDSQQTPRAGMGSKHRSVHAVPRNRA 90
TR+RHSSEQVP GPEPQADFRS +WLQ+ +GGDA +S+QTP AGMGS+HRSV AVP RA
Sbjct: 47 TRQRHSSEQVPPGPEPQADFRSKRWLQKGSGGDAGNSRQTPCAGMGSRHRSVPAVPLGRA 106
Query: 89 S 87
+
Sbjct: 107 A 107
>ref|XP_002692358.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 1178
Score = 83.6 bits (205), Expect = 6e-16
Identities = 38/50 (76%), Positives = 45/50 (90%)
Frame = -1
Query: 269 TRRRHSSEQVPLGPEPQADFRSGKWLQERAGGDARDSQQTPRAGMGSKHR 120
TR+RHSSEQVP GPEPQADFRS +WLQ+ +GGDA +S+QTP AGMGS+HR
Sbjct: 47 TRQRHSSEQVPPGPEPQADFRSKRWLQKGSGGDAGNSRQTPCAGMGSRHR 96
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 86,240,829
Number of extensions: 2588864
Number of successful extensions: 9446
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9432
Number of HSP's successfully gapped: 3
Length of query: 706
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 597
Effective length of database: 14,074,782
Effective search space: 8402644854
Effective search space used: 8402644854
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002392
(2120 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534414.2| PREDICTED: similar to ribophorin II precursor i... 1077 0.0
Alignment gi|XP_865679.1| PREDICTED: similar to ribophorin II precursor i... 1077 0.0
Alignment gi|XP_865774.1| PREDICTED: similar to ribophorin II precursor i... 1041 0.0
Alignment gi|XP_865790.1| PREDICTED: similar to ribophorin II precursor i... 1023 0.0
Alignment gi|XP_865741.1| PREDICTED: similar to ribophorin II precursor i... 559 e-159
Alignment gi|XP_865727.1| PREDICTED: similar to ribophorin II precursor i... 542 e-154
Alignment gi|XP_865758.1| PREDICTED: similar to ribophorin II precursor i... 525 e-149
Alignment gi|XP_865712.1| PREDICTED: similar to ribophorin II precursor i... 217 4e-56
Alignment gi|XP_865695.1| PREDICTED: similar to ribophorin II precursor i... 77 5e-14
>ref|XP_534414.2| PREDICTED: similar to ribophorin II precursor isoform 1 [Canis
familiaris].
Length = 647
Score = 1077 bits (2784), Expect = 0.0
Identities = 560/622 (90%), Positives = 573/622 (92%)
Frame = +3
Query: 255 MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 434
MA PG+STV LLALTI+A QALTPTHYLTK DVERL+ASLDRPFTSLESAFYSIVGLSS
Sbjct: 1 MASPGASTVFLLALTILAGTQALTPTHYLTKPDVERLRASLDRPFTSLESAFYSIVGLSS 60
Query: 435 LGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDS 614
LG QVPD KKAC FIKSNLDP NVDSLFY AQSSQALSGCEISISNETKDLLLAAVSEDS
Sbjct: 61 LGVQVPDVKKACAFIKSNLDPGNVDSLFYAAQSSQALSGCEISISNETKDLLLAAVSEDS 120
Query: 615 SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 794
SVTQIYHAVAALSGFGLPLASQEAL ALTARLSKEETVLATVQALQTAS+LSQQADLRSI
Sbjct: 121 SVTQIYHAVAALSGFGLPLASQEALSALTARLSKEETVLATVQALQTASHLSQQADLRSI 180
Query: 795 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTI 974
VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMN I
Sbjct: 181 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAI 240
Query: 975 FSKKNFESLPEXXXXXXXXXXXXQNRYHXXXXXXXEGSPSDTQEQAFLRLQVTNVLSQPL 1154
FSKKNFESL E QNRYH EG+PSDT EQA LRLQVTNVLSQPL
Sbjct: 241 FSKKNFESLSEAFSVASAAAALSQNRYHVPVVVVPEGTPSDTHEQAILRLQVTNVLSQPL 300
Query: 1155 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYIA 1334
TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNF+NVKFSSGYYDFSVKVEGDNRYIA
Sbjct: 301 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFMNVKFSSGYYDFSVKVEGDNRYIA 360
Query: 1335 NTVELRVKISSEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQL 1514
N+VELRVKIS+EVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKG FIADSHQNFALFFQL
Sbjct: 361 NSVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQL 420
Query: 1515 VDVNTGAKLTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTYT 1694
VDVNTGA+LTPHQTFVRLHNQKTGQEVVFVAEPDSKNVY+FELDTSERKIEFDSASGTYT
Sbjct: 421 VDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYKFELDTSERKIEFDSASGTYT 480
Query: 1695 LYLIIGDATLKNPIHWNVADVVIRFPKEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTV 1874
LYLIIGDATLKNPI WNVADVVI+FP+EDAPSTVLSKNLFT KQEIQHLFREPEKRPPTV
Sbjct: 481 LYLIIGDATLKNPILWNVADVVIKFPEEDAPSTVLSKNLFTPKQEIQHLFREPEKRPPTV 540
Query: 1875 VSNTFTAXXXXXXXXXXXXWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF 2054
VSNTFTA WIRIGAN+SNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF
Sbjct: 541 VSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF 600
Query: 2055 QTLKYLAILGSVTFLAGNRMLA 2120
QTLKYLAILGSVTFLAGNRMLA
Sbjct: 601 QTLKYLAILGSVTFLAGNRMLA 622
>ref|XP_865679.1| PREDICTED: similar to ribophorin II precursor isoform 3 [Canis
familiaris].
Length = 631
Score = 1077 bits (2784), Expect = 0.0
Identities = 560/622 (90%), Positives = 573/622 (92%)
Frame = +3
Query: 255 MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 434
MA PG+STV LLALTI+A QALTPTHYLTK DVERL+ASLDRPFTSLESAFYSIVGLSS
Sbjct: 1 MASPGASTVFLLALTILAGTQALTPTHYLTKPDVERLRASLDRPFTSLESAFYSIVGLSS 60
Query: 435 LGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDS 614
LG QVPD KKAC FIKSNLDP NVDSLFY AQSSQALSGCEISISNETKDLLLAAVSEDS
Sbjct: 61 LGVQVPDVKKACAFIKSNLDPGNVDSLFYAAQSSQALSGCEISISNETKDLLLAAVSEDS 120
Query: 615 SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 794
SVTQIYHAVAALSGFGLPLASQEAL ALTARLSKEETVLATVQALQTAS+LSQQADLRSI
Sbjct: 121 SVTQIYHAVAALSGFGLPLASQEALSALTARLSKEETVLATVQALQTASHLSQQADLRSI 180
Query: 795 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTI 974
VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMN I
Sbjct: 181 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAI 240
Query: 975 FSKKNFESLPEXXXXXXXXXXXXQNRYHXXXXXXXEGSPSDTQEQAFLRLQVTNVLSQPL 1154
FSKKNFESL E QNRYH EG+PSDT EQA LRLQVTNVLSQPL
Sbjct: 241 FSKKNFESLSEAFSVASAAAALSQNRYHVPVVVVPEGTPSDTHEQAILRLQVTNVLSQPL 300
Query: 1155 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYIA 1334
TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNF+NVKFSSGYYDFSVKVEGDNRYIA
Sbjct: 301 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFMNVKFSSGYYDFSVKVEGDNRYIA 360
Query: 1335 NTVELRVKISSEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQL 1514
N+VELRVKIS+EVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKG FIADSHQNFALFFQL
Sbjct: 361 NSVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQL 420
Query: 1515 VDVNTGAKLTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTYT 1694
VDVNTGA+LTPHQTFVRLHNQKTGQEVVFVAEPDSKNVY+FELDTSERKIEFDSASGTYT
Sbjct: 421 VDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYKFELDTSERKIEFDSASGTYT 480
Query: 1695 LYLIIGDATLKNPIHWNVADVVIRFPKEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTV 1874
LYLIIGDATLKNPI WNVADVVI+FP+EDAPSTVLSKNLFT KQEIQHLFREPEKRPPTV
Sbjct: 481 LYLIIGDATLKNPILWNVADVVIKFPEEDAPSTVLSKNLFTPKQEIQHLFREPEKRPPTV 540
Query: 1875 VSNTFTAXXXXXXXXXXXXWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF 2054
VSNTFTA WIRIGAN+SNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF
Sbjct: 541 VSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF 600
Query: 2055 QTLKYLAILGSVTFLAGNRMLA 2120
QTLKYLAILGSVTFLAGNRMLA
Sbjct: 601 QTLKYLAILGSVTFLAGNRMLA 622
>ref|XP_865774.1| PREDICTED: similar to ribophorin II precursor isoform 9 [Canis
familiaris].
Length = 617
Score = 1041 bits (2692), Expect = 0.0
Identities = 547/622 (87%), Positives = 559/622 (89%)
Frame = +3
Query: 255 MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 434
MA PG+STV LLALTI+A QALTPTHYLTK DVERL+ASLDRPFTSLESAFYSIVGLSS
Sbjct: 1 MASPGASTVFLLALTILAGTQALTPTHYLTKPDVERLRASLDRPFTSLESAFYSIVGLSS 60
Query: 435 LGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDS 614
LG QVPD KKAC FIKSNLDP NVDSLFY AQSSQALSGCEISISNETKDLLLAAVSEDS
Sbjct: 61 LGVQVPDVKKACAFIKSNLDPGNVDSLFYAAQSSQALSGCEISISNETKDLLLAAVSEDS 120
Query: 615 SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 794
SVTQIYHAVAALSGFGLPLASQEAL ALTARLSKEETVLATVQALQTAS+LSQQADLRSI
Sbjct: 121 SVTQIYHAVAALSGFGLPLASQEALSALTARLSKEETVLATVQALQTASHLSQQADLRSI 180
Query: 795 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTI 974
VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMN I
Sbjct: 181 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAI 240
Query: 975 FSKKNFESLPEXXXXXXXXXXXXQNRYHXXXXXXXEGSPSDTQEQAFLRLQVTNVLSQPL 1154
FSKKNFESL E QNRYH EG+PSDT EQA LRLQVTNVLSQPL
Sbjct: 241 FSKKNFESLSEAFSVASAAAALSQNRYHVPVVVVPEGTPSDTHEQAILRLQVTNVLSQPL 300
Query: 1155 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYIA 1334
TQATVKLEHAKSVASRATVLQKTSFTPVG GYYDFSVKVEGDNRYIA
Sbjct: 301 TQATVKLEHAKSVASRATVLQKTSFTPVG--------------GYYDFSVKVEGDNRYIA 346
Query: 1335 NTVELRVKISSEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQL 1514
N+VELRVKIS+EVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKG FIADSHQNFALFFQL
Sbjct: 347 NSVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQL 406
Query: 1515 VDVNTGAKLTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTYT 1694
VDVNTGA+LTPHQTFVRLHNQKTGQEVVFVAEPDSKNVY+FELDTSERKIEFDSASGTYT
Sbjct: 407 VDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYKFELDTSERKIEFDSASGTYT 466
Query: 1695 LYLIIGDATLKNPIHWNVADVVIRFPKEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTV 1874
LYLIIGDATLKNPI WNVADVVI+FP+EDAPSTVLSKNLFT KQEIQHLFREPEKRPPTV
Sbjct: 467 LYLIIGDATLKNPILWNVADVVIKFPEEDAPSTVLSKNLFTPKQEIQHLFREPEKRPPTV 526
Query: 1875 VSNTFTAXXXXXXXXXXXXWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF 2054
VSNTFTA WIRIGAN+SNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF
Sbjct: 527 VSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF 586
Query: 2055 QTLKYLAILGSVTFLAGNRMLA 2120
QTLKYLAILGSVTFLAGNRMLA
Sbjct: 587 QTLKYLAILGSVTFLAGNRMLA 608
>ref|XP_865790.1| PREDICTED: similar to ribophorin II precursor isoform 10 [Canis
familiaris].
Length = 596
Score = 1023 bits (2646), Expect = 0.0
Identities = 540/622 (86%), Positives = 553/622 (88%)
Frame = +3
Query: 255 MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 434
MA PG+STV LLALTI+A QALTPTHYLTK DVERL+ASLDRPFTSLESAFYSIVGLSS
Sbjct: 1 MASPGASTVFLLALTILAGTQALTPTHYLTKPDVERLRASLDRPFTSLESAFYSIVGLSS 60
Query: 435 LGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDS 614
LG QVPD KKAC FIKSNLDP NVDSLFY AQSSQALSGCEISISNETKDLLLAAVSEDS
Sbjct: 61 LGVQVPDVKKACAFIKSNLDPGNVDSLFYAAQSSQALSGCEISISNETKDLLLAAVSEDS 120
Query: 615 SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 794
SVTQIYHAVAALSGFGLPLASQEAL ALTARLSKEETVLATVQALQTAS+LSQQADLRSI
Sbjct: 121 SVTQIYHAVAALSGFGLPLASQEALSALTARLSKEETVLATVQALQTASHLSQQADLRSI 180
Query: 795 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTI 974
VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMN I
Sbjct: 181 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAI 240
Query: 975 FSKKNFESLPEXXXXXXXXXXXXQNRYHXXXXXXXEGSPSDTQEQAFLRLQVTNVLSQPL 1154
FSKKNFESL E QNRYH EG+PSDT EQA LRLQVTNVLSQPL
Sbjct: 241 FSKKNFESLSEAFSVASAAAALSQNRYHVPVVVVPEGTPSDTHEQAILRLQVTNVLSQPL 300
Query: 1155 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYIA 1334
TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNF+NVKFSSGYYDFSVKVEGDNRYIA
Sbjct: 301 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFMNVKFSSGYYDFSVKVEGDNRYIA 360
Query: 1335 NTVELRVKISSEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQL 1514
N+VELRVKIS+EVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKG FIADSHQNFALFFQL
Sbjct: 361 NSVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQL 420
Query: 1515 VDVNTGAKLTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTYT 1694
VDVNTGA+LTPHQTFVRLHNQKTGQEVVFVAEPDSKNVY+FELDTSERKIEFDSASGTYT
Sbjct: 421 VDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYKFELDTSERKIEFDSASGTYT 480
Query: 1695 LYLIIGDATLKNPIHWNVADVVIRFPKEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTV 1874
LYLIIGDATLKNPI WNVADVVI+FP+EDAPSTVLSKNLFT KQEIQ
Sbjct: 481 LYLIIGDATLKNPILWNVADVVIKFPEEDAPSTVLSKNLFTPKQEIQ------------- 527
Query: 1875 VSNTFTAXXXXXXXXXXXXWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF 2054
WIRIGAN+SNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF
Sbjct: 528 -------------------WIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF 568
Query: 2055 QTLKYLAILGSVTFLAGNRMLA 2120
QTLKYLAILGSVTFLAGNRMLA
Sbjct: 569 QTLKYLAILGSVTFLAGNRMLA 590
>ref|XP_865741.1| PREDICTED: similar to ribophorin II precursor isoform 7 [Canis
familiaris].
Length = 343
Score = 559 bits (1440), Expect = e-159
Identities = 298/338 (88%), Positives = 304/338 (89%)
Frame = +3
Query: 255 MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 434
MA PG+STV LLALTI+A QALTPTHYLTK DVERL+ASLDRPFTSLESAFYSIVGLSS
Sbjct: 1 MASPGASTVFLLALTILAGTQALTPTHYLTKPDVERLRASLDRPFTSLESAFYSIVGLSS 60
Query: 435 LGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDS 614
LG QVPD KKAC FIKSNLDP NVDSLFY AQSSQALSGCEISISNETKDLLLAAVSEDS
Sbjct: 61 LGVQVPDVKKACAFIKSNLDPGNVDSLFYAAQSSQALSGCEISISNETKDLLLAAVSEDS 120
Query: 615 SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 794
SVTQIYHAVAALSGFGLPLASQEAL ALTARLSKEETVLATVQALQTAS+LSQQADLRSI
Sbjct: 121 SVTQIYHAVAALSGFGLPLASQEALSALTARLSKEETVLATVQALQTASHLSQQADLRSI 180
Query: 795 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTI 974
VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMN I
Sbjct: 181 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAI 240
Query: 975 FSKKNFESLPEXXXXXXXXXXXXQNRYHXXXXXXXEGSPSDTQEQAFLRLQVTNVLSQPL 1154
FSKKNFESL E QNRYH EG+PSDT EQA LRLQVTNVLSQPL
Sbjct: 241 FSKKNFESLSEAFSVASAAAALSQNRYHVPVVVVPEGTPSDTHEQAILRLQVTNVLSQPL 300
Query: 1155 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVN 1268
TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNF+N
Sbjct: 301 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFMN 338
>ref|XP_865727.1| PREDICTED: similar to ribophorin II precursor isoform 6 [Canis
familiaris].
Length = 329
Score = 542 bits (1396), Expect = e-154
Identities = 290/329 (88%), Positives = 295/329 (89%)
Frame = +3
Query: 255 MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 434
MA PG+STV LLALTI+A QALTPTHYLTK DVERL+ASLDRPFTSLESAFYSIVGLSS
Sbjct: 1 MASPGASTVFLLALTILAGTQALTPTHYLTKPDVERLRASLDRPFTSLESAFYSIVGLSS 60
Query: 435 LGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDS 614
LG QVPD KKAC FIKSNLDP NVDSLFY AQSSQALSGCEISISNETKDLLLAAVSEDS
Sbjct: 61 LGVQVPDVKKACAFIKSNLDPGNVDSLFYAAQSSQALSGCEISISNETKDLLLAAVSEDS 120
Query: 615 SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 794
SVTQIYHAVAALSGFGLPLASQEAL ALTARLSKEETVLATVQALQTAS+LSQQADLRSI
Sbjct: 121 SVTQIYHAVAALSGFGLPLASQEALSALTARLSKEETVLATVQALQTASHLSQQADLRSI 180
Query: 795 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTI 974
VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMN I
Sbjct: 181 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAI 240
Query: 975 FSKKNFESLPEXXXXXXXXXXXXQNRYHXXXXXXXEGSPSDTQEQAFLRLQVTNVLSQPL 1154
FSKKNFESL E QNRYH EG+PSDT EQA LRLQVTNVLSQPL
Sbjct: 241 FSKKNFESLSEAFSVASAAAALSQNRYHVPVVVVPEGTPSDTHEQAILRLQVTNVLSQPL 300
Query: 1155 TQATVKLEHAKSVASRATVLQKTSFTPVG 1241
TQATVKLEHAKSVASRATVLQKTSFTPVG
Sbjct: 301 TQATVKLEHAKSVASRATVLQKTSFTPVG 329
>ref|XP_865758.1| PREDICTED: similar to ribophorin II precursor isoform 8 [Canis
familiaris].
Length = 295
Score = 525 bits (1351), Expect = e-149
Identities = 263/286 (91%), Positives = 271/286 (94%)
Frame = +3
Query: 1263 VNVKFSSGYYDFSVKVEGDNRYIANTVELRVKISSEVGITNVDLSTVDKDQSIAPKTTRV 1442
+NVKFSSGYYDFSVKVEGDNRYIAN+VELRVKIS+EVGITNVDLSTVDKDQSIAPKTTRV
Sbjct: 1 MNVKFSSGYYDFSVKVEGDNRYIANSVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRV 60
Query: 1443 TYPAKAKGAFIADSHQNFALFFQLVDVNTGAKLTPHQTFVRLHNQKTGQEVVFVAEPDSK 1622
TYPAKAKG FIADSHQNFALFFQLVDVNTGA+LTPHQTFVRLHNQKTGQEVVFVAEPDSK
Sbjct: 61 TYPAKAKGTFIADSHQNFALFFQLVDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDSK 120
Query: 1623 NVYRFELDTSERKIEFDSASGTYTLYLIIGDATLKNPIHWNVADVVIRFPKEDAPSTVLS 1802
NVY+FELDTSERKIEFDSASGTYTLYLIIGDATLKNPI WNVADVVI+FP+EDAPSTVLS
Sbjct: 121 NVYKFELDTSERKIEFDSASGTYTLYLIIGDATLKNPILWNVADVVIKFPEEDAPSTVLS 180
Query: 1803 KNLFTAKQEIQHLFREPEKRPPTVVSNTFTAXXXXXXXXXXXXWIRIGANISNFTFAPST 1982
KNLFT KQEIQHLFREPEKRPPTVVSNTFTA WIRIGAN+SNFTFAPST
Sbjct: 181 KNLFTPKQEIQHLFREPEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFTFAPST 240
Query: 1983 IIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNRMLA 2120
IIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNRMLA
Sbjct: 241 IIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNRMLA 286
>ref|XP_865712.1| PREDICTED: similar to ribophorin II precursor isoform 5 [Canis
familiaris].
Length = 137
Score = 217 bits (552), Expect = 4e-56
Identities = 108/124 (87%), Positives = 111/124 (89%)
Frame = +3
Query: 1749 ADVVIRFPKEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTVVSNTFTAXXXXXXXXXXX 1928
ADVVI+FP+EDAPSTVLSKNLFT KQEIQHLFREPEKRPPTVVSNTFTA
Sbjct: 5 ADVVIKFPEEDAPSTVLSKNLFTPKQEIQHLFREPEKRPPTVVSNTFTALILSPLLLLFA 64
Query: 1929 XWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGN 2108
WIRIGAN+SNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGN
Sbjct: 65 LWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGN 124
Query: 2109 RMLA 2120
RMLA
Sbjct: 125 RMLA 128
>ref|XP_865695.1| PREDICTED: similar to ribophorin II precursor isoform 4 [Canis
familiaris].
Length = 46
Score = 77.4 bits (189), Expect = 5e-14
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +3
Query: 2010 MLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNRMLA 2120
MLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNRMLA
Sbjct: 1 MLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNRMLA 37
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 89,741,325
Number of extensions: 2655875
Number of successful extensions: 9689
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 9668
Number of HSP's successfully gapped: 9
Length of query: 706
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 596
Effective length of database: 15,207,544
Effective search space: 9063696224
Effective search space used: 9063696224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002392
(2120 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002942.2| dolichyl-diphosphooligosaccharide--protein glyc... 1076 0.0
Alignment gi|NP_001129243.1| dolichyl-diphosphooligosaccharide--protein g... 1001 0.0
Alignment gi|NP_998797.1| hypothetical protein LOC140699 isoform 3 [Homo ... 79 2e-14
Alignment gi|NP_998796.1| hypothetical protein LOC140699 isoform 2 [Homo ... 79 2e-14
Alignment gi|NP_689716.4| hypothetical protein LOC140699 isoform 1 [Homo ... 79 2e-14
>ref|NP_002942.2| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit 2 isoform 1 precursor [Homo sapiens].
Length = 631
Score = 1076 bits (2782), Expect = 0.0
Identities = 559/622 (89%), Positives = 575/622 (92%)
Frame = +3
Query: 255 MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 434
MAPPGSSTV LLALTIIAS ALTPTHYLTKHDVERLKASLDRPFT+LESAFYSIVGLSS
Sbjct: 1 MAPPGSSTVFLLALTIIASTWALTPTHYLTKHDVERLKASLDRPFTNLESAFYSIVGLSS 60
Query: 435 LGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDS 614
LGAQVPD KKACT+I+SNLDPSNVDSLFY AQ+SQALSGCEISISNETKDLLLAAVSEDS
Sbjct: 61 LGAQVPDAKKACTYIRSNLDPSNVDSLFYAAQASQALSGCEISISNETKDLLLAAVSEDS 120
Query: 615 SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 794
SVTQIYHAVAALSGFGLPLASQEAL ALTARLSKEETVLATVQALQTAS+LSQQADLRSI
Sbjct: 121 SVTQIYHAVAALSGFGLPLASQEALSALTARLSKEETVLATVQALQTASHLSQQADLRSI 180
Query: 795 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTI 974
VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMN I
Sbjct: 181 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAI 240
Query: 975 FSKKNFESLPEXXXXXXXXXXXXQNRYHXXXXXXXEGSPSDTQEQAFLRLQVTNVLSQPL 1154
FSKKNFESL E NRYH EGS SDT EQA LRLQVTNVLSQPL
Sbjct: 241 FSKKNFESLSEAFSVASAAAVLSHNRYHVPVVVVPEGSASDTHEQAILRLQVTNVLSQPL 300
Query: 1155 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYIA 1334
TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNF+NVKFSSGYYDF V+VEGDNRYIA
Sbjct: 301 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFMNVKFSSGYYDFLVEVEGDNRYIA 360
Query: 1335 NTVELRVKISSEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQL 1514
NTVELRVKIS+EVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKG FIADSHQNFALFFQL
Sbjct: 361 NTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQL 420
Query: 1515 VDVNTGAKLTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTYT 1694
VDVNTGA+LTPHQTFVRLHNQKTGQEVVFVAEPD+KNVY+FELDTSERKIEFDSASGTYT
Sbjct: 421 VDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDNKNVYKFELDTSERKIEFDSASGTYT 480
Query: 1695 LYLIIGDATLKNPIHWNVADVVIRFPKEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTV 1874
LYLIIGDATLKNPI WNVADVVI+FP+E+APSTVLS+NLFT KQEIQHLFREPEKRPPTV
Sbjct: 481 LYLIIGDATLKNPILWNVADVVIKFPEEEAPSTVLSQNLFTPKQEIQHLFREPEKRPPTV 540
Query: 1875 VSNTFTAXXXXXXXXXXXXWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF 2054
VSNTFTA WIRIGAN+SNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF
Sbjct: 541 VSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF 600
Query: 2055 QTLKYLAILGSVTFLAGNRMLA 2120
QTLKYLAILGSVTFLAGNRMLA
Sbjct: 601 QTLKYLAILGSVTFLAGNRMLA 622
>ref|NP_001129243.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit 2 isoform 2 precursor [Homo sapiens].
Length = 615
Score = 1001 bits (2588), Expect = 0.0
Identities = 531/622 (85%), Positives = 544/622 (87%)
Frame = +3
Query: 255 MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 434
MAPPGSSTV LLALTIIAS ALTPTHYLTKHDVERLKASLDRPFT+LESAFYSIVGLSS
Sbjct: 1 MAPPGSSTVFLLALTIIASTWALTPTHYLTKHDVERLKASLDRPFTNLESAFYSIVGLSS 60
Query: 435 LGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDS 614
LGAQVPD K ISISNETKDLLLAAVSEDS
Sbjct: 61 LGAQVPDAK--------------------------------ISISNETKDLLLAAVSEDS 88
Query: 615 SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 794
SVTQIYHAVAALSGFGLPLASQEAL ALTARLSKEETVLATVQALQTAS+LSQQADLRSI
Sbjct: 89 SVTQIYHAVAALSGFGLPLASQEALSALTARLSKEETVLATVQALQTASHLSQQADLRSI 148
Query: 795 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTI 974
VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMN I
Sbjct: 149 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAI 208
Query: 975 FSKKNFESLPEXXXXXXXXXXXXQNRYHXXXXXXXEGSPSDTQEQAFLRLQVTNVLSQPL 1154
FSKKNFESL E NRYH EGS SDT EQA LRLQVTNVLSQPL
Sbjct: 209 FSKKNFESLSEAFSVASAAAVLSHNRYHVPVVVVPEGSASDTHEQAILRLQVTNVLSQPL 268
Query: 1155 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYIA 1334
TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNF+NVKFSSGYYDF V+VEGDNRYIA
Sbjct: 269 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFMNVKFSSGYYDFLVEVEGDNRYIA 328
Query: 1335 NTVELRVKISSEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQL 1514
NTVELRVKIS+EVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKG FIADSHQNFALFFQL
Sbjct: 329 NTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQL 388
Query: 1515 VDVNTGAKLTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTYT 1694
VDVNTGA+LTPHQTFVRLHNQKTGQEVVFVAEPD+KNVY+FELDTSERKIEFDSASGTYT
Sbjct: 389 VDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDNKNVYKFELDTSERKIEFDSASGTYT 448
Query: 1695 LYLIIGDATLKNPIHWNVADVVIRFPKEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTV 1874
LYLIIGDATLKNPI WNVADVVI+FP+E+APSTVLS+NLFT KQEIQHLFREPEKRPPTV
Sbjct: 449 LYLIIGDATLKNPILWNVADVVIKFPEEEAPSTVLSQNLFTPKQEIQHLFREPEKRPPTV 508
Query: 1875 VSNTFTAXXXXXXXXXXXXWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF 2054
VSNTFTA WIRIGAN+SNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF
Sbjct: 509 VSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF 568
Query: 2055 QTLKYLAILGSVTFLAGNRMLA 2120
QTLKYLAILGSVTFLAGNRMLA
Sbjct: 569 QTLKYLAILGSVTFLAGNRMLA 590
>ref|NP_998797.1| hypothetical protein LOC140699 isoform 3 [Homo sapiens].
Length = 573
Score = 79.0 bits (193), Expect = 2e-14
Identities = 39/50 (78%), Positives = 41/50 (82%)
Frame = -1
Query: 269 TRRRHSSEQVPLGPEPQADFRSGKWLQERAGGDARDSQQTPRAGMGSKHR 120
TRRRHSSEQVP EP+ADFRSGKWLQE A GDARDS+Q RA M SKHR
Sbjct: 47 TRRRHSSEQVPPESEPRADFRSGKWLQEPATGDARDSRQALRARMSSKHR 96
>ref|NP_998796.1| hypothetical protein LOC140699 isoform 2 [Homo sapiens].
Length = 608
Score = 79.0 bits (193), Expect = 2e-14
Identities = 39/50 (78%), Positives = 41/50 (82%)
Frame = -1
Query: 269 TRRRHSSEQVPLGPEPQADFRSGKWLQERAGGDARDSQQTPRAGMGSKHR 120
TRRRHSSEQVP EP+ADFRSGKWLQE A GDARDS+Q RA M SKHR
Sbjct: 47 TRRRHSSEQVPPESEPRADFRSGKWLQEPATGDARDSRQALRARMSSKHR 96
>ref|NP_689716.4| hypothetical protein LOC140699 isoform 1 [Homo sapiens].
Length = 1052
Score = 79.0 bits (193), Expect = 2e-14
Identities = 39/50 (78%), Positives = 41/50 (82%)
Frame = -1
Query: 269 TRRRHSSEQVPLGPEPQADFRSGKWLQERAGGDARDSQQTPRAGMGSKHR 120
TRRRHSSEQVP EP+ADFRSGKWLQE A GDARDS+Q RA M SKHR
Sbjct: 47 TRRRHSSEQVPPESEPRADFRSGKWLQEPATGDARDSRQALRARMSSKHR 96
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 88,262,294
Number of extensions: 2614749
Number of successful extensions: 9360
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 9352
Number of HSP's successfully gapped: 5
Length of query: 706
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 596
Effective length of database: 14,671,124
Effective search space: 8743989904
Effective search space used: 8743989904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002392
(2120 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062616.2| dolichyl-diphosphooligosaccharide--protein glyc... 1041 0.0
Alignment gi|NP_001034646.2| hypothetical protein LOC629499 [Mus musculus]. 80 8e-15
>ref|NP_062616.2| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit 2 [Mus musculus].
Length = 631
Score = 1041 bits (2691), Expect = 0.0
Identities = 537/622 (86%), Positives = 563/622 (90%)
Frame = +3
Query: 255 MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 434
MAPPGSS V LLALTI AS QALTPTHYLTK DVERLKASLDRPFT LESAFYSIVGLSS
Sbjct: 1 MAPPGSSAVFLLALTITASVQALTPTHYLTKQDVERLKASLDRPFTDLESAFYSIVGLSS 60
Query: 435 LGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDS 614
LG QVPD KKACTFIKSNLDPSNVDSLFY AQSSQ LSGCEIS+SNETK+LLLAAVSEDS
Sbjct: 61 LGVQVPDVKKACTFIKSNLDPSNVDSLFYAAQSSQVLSGCEISVSNETKELLLAAVSEDS 120
Query: 615 SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 794
+ QIYHAVAALSGFGLPLAS EALGALTARL KEETVLATVQALQTAS+LSQQADLR+I
Sbjct: 121 PIAQIYHAVAALSGFGLPLASNEALGALTARLGKEETVLATVQALQTASHLSQQADLRNI 180
Query: 795 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTI 974
VEEIEDLVARLDELGGVYLQFEEGLE TALFVAATYKLMDHVGTEPS+KEDQVIQLMNTI
Sbjct: 181 VEEIEDLVARLDELGGVYLQFEEGLELTALFVAATYKLMDHVGTEPSMKEDQVIQLMNTI 240
Query: 975 FSKKNFESLPEXXXXXXXXXXXXQNRYHXXXXXXXEGSPSDTQEQAFLRLQVTNVLSQPL 1154
FSKKNFESL E QNRYH EGS SDTQEQA LRLQV+NVLSQPL
Sbjct: 241 FSKKNFESLSEAFSVASAAAALSQNRYHVPVVVVPEGSTSDTQEQAILRLQVSNVLSQPL 300
Query: 1155 TQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYIA 1334
QA VKLEHAKS A+RATVLQKT F+ VG+VFELNF NVK SSGYYDFSV+VEGD+RYIA
Sbjct: 301 AQAAVKLEHAKSAATRATVLQKTPFSLVGNVFELNFKNVKLSSGYYDFSVRVEGDSRYIA 360
Query: 1335 NTVELRVKISSEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQL 1514
NTVELRVKIS+EVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKG FIADSHQNFALFFQL
Sbjct: 361 NTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQL 420
Query: 1515 VDVNTGAKLTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTYT 1694
VDVNTGA+LTPHQTFVRLHNQKTGQEVVFVAEPD+KNVY+FELDTSERKIEFDSASGTYT
Sbjct: 421 VDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDNKNVYKFELDTSERKIEFDSASGTYT 480
Query: 1695 LYLIIGDATLKNPIHWNVADVVIRFPKEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPTV 1874
LYLIIGDATLKNPI WNVADVVI+FP+E+APSTVLS++LFT KQEIQHLFREPEKRPPTV
Sbjct: 481 LYLIIGDATLKNPILWNVADVVIKFPEEEAPSTVLSQSLFTPKQEIQHLFREPEKRPPTV 540
Query: 1875 VSNTFTAXXXXXXXXXXXXWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMF 2054
VSNTFTA WIRIGAN+SNFTFAPST+IFHLGHAAMLGLMY+YWTQLNMF
Sbjct: 541 VSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTVIFHLGHAAMLGLMYIYWTQLNMF 600
Query: 2055 QTLKYLAILGSVTFLAGNRMLA 2120
QTLKYLA+LG+VTFLAGNRMLA
Sbjct: 601 QTLKYLAVLGTVTFLAGNRMLA 622
>ref|NP_001034646.2| hypothetical protein LOC629499 [Mus musculus].
Length = 1049
Score = 79.7 bits (195), Expect = 8e-15
Identities = 40/51 (78%), Positives = 43/51 (84%)
Frame = -1
Query: 269 TRRRHSSEQVPLGPEPQADFRSGKWLQERAGGDARDSQQTPRAGMGSKHRS 117
TRRRHSSEQVP PE QADFRSGKWLQERAGGDARD + TP A MGS+ R+
Sbjct: 47 TRRRHSSEQVPPEPE-QADFRSGKWLQERAGGDARDPRHTPLARMGSRQRA 96
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 74,774,081
Number of extensions: 2186008
Number of successful extensions: 7603
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7581
Number of HSP's successfully gapped: 2
Length of query: 706
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 598
Effective length of database: 12,373,671
Effective search space: 7399455258
Effective search space used: 7399455258
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002392
(2120 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999106.1| dolichyl-diphosphooligosaccharide--protein glyc... 1074 0.0
Alignment gi|XP_003360033.1| PREDICTED: dolichyl-diphosphooligosaccharide... 507 e-144
>ref|NP_999106.1| dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit 2 [Sus scrofa].
Length = 629
Score = 1074 bits (2777), Expect = 0.0
Identities = 568/623 (91%), Positives = 573/623 (91%), Gaps = 1/623 (0%)
Frame = +3
Query: 255 MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 434
MAPPGS TVLLLALTIIA QAL PTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS
Sbjct: 1 MAPPGSRTVLLLALTIIARTQALKPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 60
Query: 435 LGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDS 614
LGAQVPDEKKACTFIKSNLDPSNVDSLFY QSSQALSGCEISISNETKDLLLAAVSEDS
Sbjct: 61 LGAQVPDEKKACTFIKSNLDPSNVDSLFYPPQSSQALSGCEISISNETKDLLLAAVSEDS 120
Query: 615 SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 794
SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI
Sbjct: 121 SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 180
Query: 795 VEEIEDLVARLDELGGVYLQFEEGL-ETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNT 971
VEEIEDLVARLDELGGVYLQFEEGL ETTALFVAATYKLMDH GTEPSIKEDQVIQLMNT
Sbjct: 181 VEEIEDLVARLDELGGVYLQFEEGLLETTALFVAATYKLMDHEGTEPSIKEDQVIQLMNT 240
Query: 972 IFSKKNFESLPEXXXXXXXXXXXXQNRYHXXXXXXXEGSPSDTQEQAFLRLQVTNVLSQP 1151
IFSKKNFESLPE QNRYH EGSPSDTQEQAFLRLQVTNVLSQP
Sbjct: 241 IFSKKNFESLPEAFSVASAAAALSQNRYHVPVVVVPEGSPSDTQEQAFLRLQVTNVLSQP 300
Query: 1152 LTQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYI 1331
LTQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYI
Sbjct: 301 LTQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFVNVKFSSGYYDFSVKVEGDNRYI 360
Query: 1332 ANTVELRVKISSEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGAFIADSHQNFALFFQ 1511
ANTVELRVKIS+EVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKG FIADS QNFALFFQ
Sbjct: 361 ANTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGPFIADSPQNFALFFQ 420
Query: 1512 LVDVNTGAKLTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTY 1691
LVDVNTGA+LTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTY
Sbjct: 421 LVDVNTGAELTPHQTFVRLHNQKTGQEVVFVAEPDSKNVYRFELDTSERKIEFDSASGTY 480
Query: 1692 TLYLIIGDATLKNPIHWNVADVVIRFPKEDAPSTVLSKNLFTAKQEIQHLFREPEKRPPT 1871
TLYLIIGDATLKNPIHWNVADVVIRFP+EDAPSTVLSKNLFTAKQEIQHLFR+PEKRPPT
Sbjct: 481 TLYLIIGDATLKNPIHWNVADVVIRFPEEDAPSTVLSKNLFTAKQEIQHLFRDPEKRPPT 540
Query: 1872 VVSNTFTAXXXXXXXXXXXXWIRIGANISNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNM 2051
VVSNTFT WIRIGA ISNFTF TIIFHLGHA + MYVYWTQLNM
Sbjct: 541 VVSNTFTGLILSPLLLLFALWIRIGAKISNFTFG-LTIIFHLGHAML--AMYVYWTQLNM 597
Query: 2052 FQTLKYLAILGSVTFLAGNRMLA 2120
FQTLKYLAILGSVTFLAGNRMLA
Sbjct: 598 FQTLKYLAILGSVTFLAGNRMLA 620
>ref|XP_003360033.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein
glycosyltransferase subunit 2-like [Sus scrofa].
Length = 476
Score = 507 bits (1306), Expect = e-144
Identities = 270/289 (93%), Positives = 270/289 (93%)
Frame = +3
Query: 255 MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 434
MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS
Sbjct: 1 MAPPGSSTVLLLALTIIASAQALTPTHYLTKHDVERLKASLDRPFTSLESAFYSIVGLSS 60
Query: 435 LGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDS 614
LGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDS
Sbjct: 61 LGAQVPDEKKACTFIKSNLDPSNVDSLFYTAQSSQALSGCEISISNETKDLLLAAVSEDS 120
Query: 615 SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 794
SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI
Sbjct: 121 SVTQIYHAVAALSGFGLPLASQEALGALTARLSKEETVLATVQALQTASYLSQQADLRSI 180
Query: 795 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTI 974
VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTI
Sbjct: 181 VEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNTI 240
Query: 975 FSKKNFESLPEXXXXXXXXXXXXQNRYHXXXXXXXEGSPSDTQEQAFLR 1121
FSKKNFESLPE QNRYH EGSPSDTQEQAFLR
Sbjct: 241 FSKKNFESLPEAFSVASAAAALSQNRYHVPVVVVPEGSPSDTQEQAFLR 289
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 55,568,994
Number of extensions: 1666984
Number of successful extensions: 6036
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6027
Number of HSP's successfully gapped: 2
Length of query: 706
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 600
Effective length of database: 8,704,850
Effective search space: 5222910000
Effective search space used: 5222910000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002392
(2120 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 523 e-145
gb|JH118447.1| Sus scrofa unplaced genomic scaffold ChrUScaf392 355 6e-95
>Sscrofa_Chr17
|| Length = 69701581
Score = 523 bits (264), Expect = e-145
Identities = 267/268 (99%)
Strand = Plus / Plus
Query: 2 acagcgaggggggaagcgggcctgtacgcgaagaccgcggtgccctgtgcgccgaaggac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45759735 acagcgaggggggaagcgggcctgtacgcgaagaccgcggtgccctgtgcgccgaaggac 45759794
Query: 62 tggcattctggccgcggctcctaggagaggcccggttccgcgggacagcgtggacggacc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 45759795 tggcattctggccgcggctcctaggagaggcccggttccgcgggacagcgtggactgacc 45759854
Query: 122 tgtgcttagagcccatcccagcacgcggagtctgttgcgagtcccgggcgtcccctccgg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45759855 tgtgcttagagcccatcccagcacgcggagtctgttgcgagtcccgggcgtcccctccgg 45759914
Query: 182 cgcgctcttggagccactttcccgagcggaagtccgcctgcggctcgggccctagtggga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45759915 cgcgctcttggagccactttcccgagcggaagtccgcctgcggctcgggccctagtggga 45759974
Query: 242 cctgctcggaggaatggcgccgccgggt 269
||||||||||||||||||||||||||||
Sbjct: 45759975 cctgctcggaggaatggcgccgccgggt 45760002
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Minus
Query: 1550 ccagacatttgtccgactccacaaccagaagactggccaggaagtggtgtttgtcgcaga 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45869920 ccagacatttgtccgactccacaaccagaagactggccaggaagtggtgtttgtcgcaga 45869861
Query: 1610 gccagacagcaagaatgtgtacaggtttgaactggatacctccgagagaaagattgagtt 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45869860 gccagacagcaagaatgtgtacaggtttgaactggatacctccgagagaaagattgagtt 45869801
Query: 1670 tgactctgcatccggcacctacactctctacttgatcatcggagatgctactttgaagaa 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45869800 tgactctgcatccggcacctacactctctacttgatcatcggagatgctactttgaagaa 45869741
Query: 1730 cccaatccattggaatgtgg 1749
||||||||||||||||||||
Sbjct: 45869740 cccaatccattggaatgtgg 45869721
Score = 387 bits (195), Expect = e-104
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 267 ggttcaagcactgtcttgctgttggccctgacaatcatagccagcgcccaggctctgacg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45763504 ggttcaagcactgtcttgctgttggccctgacaatcatagccagcgcccaggctctgacg 45763563
Query: 327 cccacccactacctcaccaagcatgatgtggagagactgaaagcctcactggaccgccct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45763564 cccacccactacctcaccaagcatgatgtggagagactgaaagcctcactggaccgccct 45763623
Query: 387 ttcacaagtttggaatctgctttctactccattgtgggactcagcagccttggtgcccag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45763624 ttcacaagtttggaatctgctttctactccattgtgggactcagcagccttggtgcccag 45763683
Query: 447 gtgccagatgaaaag 461
|||||||||||||||
Sbjct: 45763684 gtgccagatgaaaag 45763698
Score = 355 bits (179), Expect = 6e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 943 aggatcaggtcatccagctaatgaacaccatctttagcaagaagaactttgagtcactcc 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45774019 aggatcaggtcatccagctaatgaacaccatctttagcaagaagaactttgagtcactcc 45773960
Query: 1003 cagaagccttcagtgtggcctctgctgccgctgcactctcccagaatcgctaccatgtgc 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45773959 cagaagccttcagtgtggcctctgctgccgctgcactctcccagaatcgctaccatgtgc 45773900
Query: 1063 ctgttgtggttgtgcctgaaggctctccttccgacactcaggaacaggctttcctgcgg 1121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45773899 ctgttgtggttgtgcctgaaggctctccttccgacactcaggaacaggctttcctgcgg 45773841
Score = 353 bits (178), Expect = 3e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 556 agatctctatttcaaatgagaccaaagatctgcttctggcagctgtcagtgaagactcct 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45782156 agatctctatttcaaatgagaccaaagatctgcttctggcagctgtcagtgaagactcct 45782097
Query: 616 ctgtgacccagatctaccatgcagttgcagctctcagtggctttggccttcccttggctt 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45782096 ctgtgacccagatctaccatgcagttgcagctctcagtggctttggccttcccttggctt 45782037
Query: 676 cccaagaagcgctcggtgctctcactgctcgcctcagcaaggaagagaccgtgctagc 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45782036 cccaagaagcgctcggtgctctcactgctcgcctcagcaaggaagagaccgtgctagc 45781979
Score = 274 bits (138), Expect = 2e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 808 aggaccttgtcgctcgcctggatgaactgggaggtgtgtatctccagtttgaagaaggac 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45776252 aggaccttgtcgctcgcctggatgaactgggaggtgtgtatctccagtttgaagaaggac 45776193
Query: 868 tggaaacaacagcgttatttgtagctgccacctacaagctcatggaccacgtggggactg 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45776192 tggaaacaacagcgttatttgtagctgccacctacaagctcatggaccacgtggggactg 45776133
Query: 928 agccgtccattaaggagg 945
||||||||||||||||||
Sbjct: 45776132 agccgtccattaaggagg 45776115
Score = 238 bits (120), Expect = 1e-59
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1121 gttgcaggtcaccaacgttctgtcccagcctctgactcaggccactgttaaactagaaca 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45786475 gttgcaggtcaccaacgttctgtcccagcctctgactcaggccactgttaaactagaaca 45786534
Query: 1181 tgctaagtctgttgcttccagagccacggtcctccagaagacgtctttcacccctgtggg 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45786535 tgctaagtctgttgcttccagagccacggtcctccagaagacgtctttcacccctgtggg 45786594
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 2007 gctatgctggggctcatgtatgtctactggactcaactcaacatgttccagaccctgaaa 2066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45863502 gctatgctggggctcatgtatgtctactggactcaactcaacatgttccagaccctgaaa 45863443
Query: 2067 tacctggccatcctgggcagtgtgacatttttggctggcaatcggatgctggcc 2120
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45863442 tacctggccatcctgggcagtgtgacatttttggctggcaatcggatgctggcc 45863389
Score = 222 bits (112), Expect = 6e-55
Identities = 115/116 (99%)
Strand = Plus / Minus
Query: 1438 gggtgacctacccagccaaggccaagggcgctttcatcgcagacagccaccagaactttg 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45872808 gggtgacctacccagccaaggccaagggcgctttcatcgcagacagccaccagaactttg 45872749
Query: 1498 ctttattcttccagctggtagatgtgaacactggtgctaaactcacccctcaccag 1553
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 45872748 ctttattcttccagctggtagatgtgaacactggtgctgaactcacccctcaccag 45872693
Score = 212 bits (107), Expect = 6e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1240 gagatgtttttgagctaaacttcgtgaatgtcaagttttccagtggttattatgactttt 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45787547 gagatgtttttgagctaaacttcgtgaatgtcaagttttccagtggttattatgactttt 45787606
Query: 1300 ctgtcaaagttgagggtgacaatcgttatattgcaaatactgtagag 1346
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45787607 ctgtcaaagttgagggtgacaatcgttatattgcaaatactgtagag 45787653
Score = 196 bits (99), Expect = 3e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 1833 cagcatctgttccgcgagcctgagaagaggcctcccacggtggtgtccaatacattcact 1892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45867417 cagcatctgttccgcgagcctgagaagaggcctcccacggtggtgtccaatacattcact 45867358
Query: 1893 gccctgatcctctcgcccttgctcctgctctttgctctg 1931
|||||||||||||||||||||||||||||||||||||||
Sbjct: 45867357 gccctgatcctctcgcccttgctcctgctctttgctctg 45867319
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 460 agaaagcgtgcaccttcattaagtcaaaccttgatcccagcaacgtggattcccttttct 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45783006 agaaagcgtgcaccttcattaagtcaaaccttgatcccagcaacgtggattcccttttct 45782947
Query: 520 acactgcccagtccagccaggccctctcagggtgtgag 557
||||||||||||||||||||||||||||||||||||||
Sbjct: 45782946 acactgcccagtccagccaggccctctcagggtgtgag 45782909
Score = 180 bits (91), Expect = 2e-42
Identities = 94/95 (98%)
Strand = Plus / Minus
Query: 1345 agcttagagtcaagatttcctctgaagttggcatcacaaatgttgatctctccactgtgg 1404
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 45874957 agcttagagtcaagatttccactgaagttggcatcacaaatgttgatctctccactgtgg 45874898
Query: 1405 ataaggatcagagcattgcacccaaaaccacacgg 1439
|||||||||||||||||||||||||||||||||||
Sbjct: 45874897 ataaggatcagagcattgcacccaaaaccacacgg 45874863
Score = 167 bits (84), Expect = 3e-38
Identities = 87/88 (98%)
Strand = Plus / Minus
Query: 1748 ggctgatgttgtcatcaggttccctaaagaagatgctccgtcgactgtcctgtccaagaa 1807
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 45868348 ggctgatgttgtcatcaggttccctgaagaagatgctccgtcgactgtcctgtccaagaa 45868289
Query: 1808 ccttttcactgccaaacaggaaattcag 1835
||||||||||||||||||||||||||||
Sbjct: 45868288 ccttttcactgccaaacaggaaattcag 45868261
Score = 153 bits (77), Expect = 5e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 734 aacggtccaggctctgcagacagcatcctacctgtcccagcaggctgacctgagaagcat 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45777569 aacggtccaggctctgcagacagcatcctacctgtcccagcaggctgacctgagaagcat 45777510
Query: 794 cgtggaggagattgagg 810
|||||||||||||||||
Sbjct: 45777509 cgtggaggagattgagg 45777493
Score = 153 bits (77), Expect = 5e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 1931 gtggatccggattggtgccaacatctccaacttcacttttgcgcctagcacgattatatt 1990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45865135 gtggatccggattggtgccaacatctccaacttcacttttgcgcctagcacgattatatt 45865076
Query: 1991 tcacctgggacatgctg 2007
|||||||||||||||||
Sbjct: 45865075 tcacctgggacatgctg 45865059
>gb|JH118447.1| Sus scrofa unplaced genomic scaffold ChrUScaf392
Length = 99212
Score = 355 bits (179), Expect = 6e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 943 aggatcaggtcatccagctaatgaacaccatctttagcaagaagaactttgagtcactcc 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54182 aggatcaggtcatccagctaatgaacaccatctttagcaagaagaactttgagtcactcc 54123
Query: 1003 cagaagccttcagtgtggcctctgctgccgctgcactctcccagaatcgctaccatgtgc 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54122 cagaagccttcagtgtggcctctgctgccgctgcactctcccagaatcgctaccatgtgc 54063
Query: 1063 ctgttgtggttgtgcctgaaggctctccttccgacactcaggaacaggctttcctgcgg 1121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54062 ctgttgtggttgtgcctgaaggctctccttccgacactcaggaacaggctttcctgcgg 54004
Score = 274 bits (138), Expect = 2e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 808 aggaccttgtcgctcgcctggatgaactgggaggtgtgtatctccagtttgaagaaggac 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56415 aggaccttgtcgctcgcctggatgaactgggaggtgtgtatctccagtttgaagaaggac 56356
Query: 868 tggaaacaacagcgttatttgtagctgccacctacaagctcatggaccacgtggggactg 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56355 tggaaacaacagcgttatttgtagctgccacctacaagctcatggaccacgtggggactg 56296
Query: 928 agccgtccattaaggagg 945
||||||||||||||||||
Sbjct: 56295 agccgtccattaaggagg 56278
Score = 252 bits (127), Expect = 7e-64
Identities = 130/131 (99%)
Strand = Plus / Minus
Query: 2 acagcgaggggggaagcgggcctgtacgcgaagaccgcggtgccctgtgcgccgaaggac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73181 acagcgaggggggaagcgggcctgtacgcgaagaccgcggtgccctgtgcgccgaaggac 73122
Query: 62 tggcattctggccgcggctcctaggagaggcccggttccgcgggacagcgtggacggacc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 73121 tggcattctggccgcggctcctaggagaggcccggttccgcgggacagcgtggactgacc 73062
Query: 122 tgtgcttagag 132
|||||||||||
Sbjct: 73061 tgtgcttagag 73051
Score = 238 bits (120), Expect = 1e-59
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 1121 gttgcaggtcaccaacgttctgtcccagcctctgactcaggccactgttaaactagaaca 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52233 gttgcaggtcaccaacgttctgtcccagcctctgactcaggccactgttaaactagaaca 52174
Query: 1181 tgctaagtctgttgcttccagagccacggtcctccagaagacgtctttcacccctgtggg 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52173 tgctaagtctgttgcttccagagccacggtcctccagaagacgtctttcacccctgtggg 52114
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 2007 gctatgctggggctcatgtatgtctactggactcaactcaacatgttccagaccctgaaa 2066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37108 gctatgctggggctcatgtatgtctactggactcaactcaacatgttccagaccctgaaa 37049
Query: 2067 tacctggccatcctgggcagtgtgacatttttggctggcaatcggatgctggcc 2120
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37048 tacctggccatcctgggcagtgtgacatttttggctggcaatcggatgctggcc 36995
Score = 212 bits (107), Expect = 6e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 1240 gagatgtttttgagctaaacttcgtgaatgtcaagttttccagtggttattatgactttt 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51145 gagatgtttttgagctaaacttcgtgaatgtcaagttttccagtggttattatgactttt 51086
Query: 1300 ctgtcaaagttgagggtgacaatcgttatattgcaaatactgtagag 1346
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51085 ctgtcaaagttgagggtgacaatcgttatattgcaaatactgtagag 51039
Score = 196 bits (99), Expect = 3e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 1833 cagcatctgttccgcgagcctgagaagaggcctcccacggtggtgtccaatacattcact 1892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40890 cagcatctgttccgcgagcctgagaagaggcctcccacggtggtgtccaatacattcact 40831
Query: 1893 gccctgatcctctcgcccttgctcctgctctttgctctg 1931
|||||||||||||||||||||||||||||||||||||||
Sbjct: 40830 gccctgatcctctcgcccttgctcctgctctttgctctg 40792
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 460 agaaagcgtgcaccttcattaagtcaaaccttgatcccagcaacgtggattcccttttct 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59186 agaaagcgtgcaccttcattaagtcaaaccttgatcccagcaacgtggattcccttttct 59127
Query: 520 acactgcccagtccagccaggccctctcagggtgtgag 557
||||||||||||||||||||||||||||||||||||||
Sbjct: 59126 acactgcccagtccagccaggccctctcagggtgtgag 59089
Score = 153 bits (77), Expect = 5e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 1931 gtggatccggattggtgccaacatctccaacttcacttttgcgcctagcacgattatatt 1990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38741 gtggatccggattggtgccaacatctccaacttcacttttgcgcctagcacgattatatt 38682
Query: 1991 tcacctgggacatgctg 2007
|||||||||||||||||
Sbjct: 38681 tcacctgggacatgctg 38665
Score = 153 bits (77), Expect = 5e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 734 aacggtccaggctctgcagacagcatcctacctgtcccagcaggctgacctgagaagcat 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57732 aacggtccaggctctgcagacagcatcctacctgtcccagcaggctgacctgagaagcat 57673
Query: 794 cgtggaggagattgagg 810
|||||||||||||||||
Sbjct: 57672 cgtggaggagattgagg 57656
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 58,417,917
Number of extensions: 310
Number of successful extensions: 310
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 26
Length of query: 2120
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2098
Effective length of database: 2,808,408,574
Effective search space: 5892041188252
Effective search space used: 5892041188252
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)