Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002405
(1379 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001790357.1| PREDICTED: phosphoribosyl pyrophosphate synt... 466 e-156
Alignment gi|NP_001070325.1| phosphoribosyl pyrophosphate synthase-associ... 466 e-156
Alignment gi|NP_001074982.1| phosphoribosyl pyrophosphate synthase-associ... 358 e-121
Alignment gi|NP_001039654.1| ribose-phosphate pyrophosphokinase 1 [Bos ta... 172 8e-43
Alignment gi|NP_001107624.1| ribose-phosphate pyrophosphokinase 2 [Bos ta... 171 1e-42
Alignment gi|NP_001095953.1| ribose-phosphate pyrophosphokinase 3 [Bos ta... 165 8e-41
Alignment gi|XP_002700484.1| PREDICTED: PRPS2 protein-like [Bos taurus]. 86 1e-16
>ref|XP_001790357.1| PREDICTED: phosphoribosyl pyrophosphate synthetase-associated protein
1 [Bos taurus].
Length = 385
Score = 466 bits (1198), Expect(2) = e-156
Identities = 236/240 (98%), Positives = 239/240 (99%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEI+ESVRGQDI
Sbjct: 30 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIQESVRGQDI 89
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS
Sbjct: 90 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 149
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA
Sbjct: 150 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 209
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATVHPGLELPLMMAKEEAP 1068
AKRAQSYAERLRLGLAVIHGEAQCAE+DMDDGRHSPPMVKNATVHPGLELPLMMAKE+ P
Sbjct: 210 AKRAQSYAERLRLGLAVIHGEAQCAEMDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPP 269
Score = 106 bits (265), Expect(2) = e-156
Identities = 57/90 (63%), Positives = 63/90 (70%)
Frame = +2
Query: 1055 RKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGPR 1234
++KPPIT +SFVAAAEILK++GAY+IYVMATHGILS E PR
Sbjct: 265 KEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYRIYVMATHGILSAEAPR 324
Query: 1235 PDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
ESSIDEVVVTNTV HEVQKL CPKIKT
Sbjct: 325 LIEESSIDEVVVTNTVPHEVQKLQCPKIKT 354
>ref|NP_001070325.1| phosphoribosyl pyrophosphate synthase-associated protein 1 [Bos
taurus].
Length = 356
Score = 466 bits (1198), Expect(2) = e-156
Identities = 236/240 (98%), Positives = 239/240 (99%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEI+ESVRGQDI
Sbjct: 1 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIQESVRGQDI 60
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS
Sbjct: 61 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 120
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA
Sbjct: 121 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 180
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATVHPGLELPLMMAKEEAP 1068
AKRAQSYAERLRLGLAVIHGEAQCAE+DMDDGRHSPPMVKNATVHPGLELPLMMAKE+ P
Sbjct: 181 AKRAQSYAERLRLGLAVIHGEAQCAEMDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPP 240
Score = 106 bits (265), Expect(2) = e-156
Identities = 57/90 (63%), Positives = 63/90 (70%)
Frame = +2
Query: 1055 RKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGPR 1234
++KPPIT +SFVAAAEILK++GAY+IYVMATHGILS E PR
Sbjct: 236 KEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYRIYVMATHGILSAEAPR 295
Query: 1235 PDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
ESSIDEVVVTNTV HEVQKL CPKIKT
Sbjct: 296 LIEESSIDEVVVTNTVPHEVQKLQCPKIKT 325
>ref|NP_001074982.1| phosphoribosyl pyrophosphate synthase-associated protein 2 [Bos
taurus].
Length = 369
Score = 358 bits (919), Expect(2) = e-121
Identities = 176/241 (73%), Positives = 211/241 (87%), Gaps = 1/241 (0%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE + ETRV+I+ESVRG+D+
Sbjct: 13 MNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDV 72
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQT+ +DVNT +MELLIM YA KT+CA++IIGV+PYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 73 FIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVVPYFPYSKQCKMRKRGSIVSKLLAS 132
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
M+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +
Sbjct: 133 MMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPAS 192
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKN-ATVHPGLELPLMMAKEEA 1065
AKRAQS+AERLRLG+AVIHGEAQ AE D+ DGRHSPPMV++ A +HP LE+P+++ KE+
Sbjct: 193 AKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSAAAIHPSLEIPMLIPKEKP 252
Query: 1066 P 1068
P
Sbjct: 253 P 253
Score = 98.6 bits (244), Expect(2) = e-121
Identities = 50/91 (54%), Positives = 61/91 (67%)
Frame = +2
Query: 1052 PRKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGP 1231
P++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + P
Sbjct: 248 PKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAP 307
Query: 1232 RPDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
ES+IDEVVVTNT+ HE+QKL CPKIKT
Sbjct: 308 LLIEESAIDEVVVTNTIPHEIQKLQCPKIKT 338
>ref|NP_001039654.1| ribose-phosphate pyrophosphokinase 1 [Bos taurus].
Length = 318
Score = 172 bits (435), Expect = 8e-43
Identities = 96/198 (48%), Positives = 131/198 (66%), Gaps = 1/198 (0%)
Frame = +1
Query: 373 RVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPR 552
++FS +S +L+++I +RLG ELGK V + +N ET VEI ESVRG+D++I+Q+
Sbjct: 5 KIFSGSSHQ---DLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCG 61
Query: 553 DVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRK-RGSIVCKLLASMLAKAGL 729
++N +MELLIM A K A A + VIP FPY++Q K K R I KL+A+ML+ AG
Sbjct: 62 EINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGA 121
Query: 730 THIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSY 909
HIITMDLH +IQGFF PVDNL A P +L++I+E I +RN IV+ AKR S
Sbjct: 122 DHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSI 181
Query: 910 AERLRLGLAVIHGEAQCA 963
A+RL + A+IH E + A
Sbjct: 182 ADRLNVDFALIHKERKKA 199
>ref|NP_001107624.1| ribose-phosphate pyrophosphokinase 2 [Bos taurus].
Length = 321
Score = 171 bits (434), Expect = 1e-42
Identities = 92/189 (48%), Positives = 127/189 (67%), Gaps = 4/189 (2%)
Frame = +1
Query: 409 ELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIM 588
+L++R+ +RLG ELGK + + +N ET VEI ESVRG+D++IIQ+ ++N +MELLIM
Sbjct: 14 DLSQRVADRLGLELGKVITKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLIM 73
Query: 589 AYALKTACARNIIGVIPYFPYSKQSKMRK----RGSIVCKLLASMLAKAGLTHIITMDLH 756
A K A + + VIP FPY++Q K K R I KL+A+ML+ AG HIITMDLH
Sbjct: 74 INACKIASSSRVTAVIPCFPYARQDKKDKVSASRAPISAKLVANMLSVAGADHIITMDLH 133
Query: 757 QKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLA 936
+IQGFF PVDNL A P +LQ+I+E I +++N +IV+ AKR S A+RL + A
Sbjct: 134 ASQIQGFFDIPVDNLYAEPAVLQWIRENITDWKNCIIVSPDAGGAKRVTSIADRLNVEFA 193
Query: 937 VIHGEAQCA 963
+IH E + A
Sbjct: 194 LIHKERKKA 202
>ref|NP_001095953.1| ribose-phosphate pyrophosphokinase 3 [Bos taurus].
Length = 329
Score = 165 bits (418), Expect = 8e-41
Identities = 91/192 (47%), Positives = 127/192 (66%), Gaps = 1/192 (0%)
Frame = +1
Query: 373 RVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPR 552
++FS S +L+++I +RLG ELGK V + +N ET VEI ESV+G+D++I+Q+
Sbjct: 16 KIFSGRSHQ---DLSQKIADRLGLELGKVVTKKLSNQETCVEIGESVQGEDVYIVQSGCG 72
Query: 553 DVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKM-RKRGSIVCKLLASMLAKAGL 729
++N +MELLIM A K A A + VIP FPY++Q K R I KL+A ML+ AG
Sbjct: 73 EINDNLMELLIMINACKIASAGRVTAVIPCFPYARQDKRGESRAPISAKLVADMLSTAGA 132
Query: 730 THIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSY 909
HIITMDLH +IQGFF PVDNL A P +L++I+E+I ++R+ IV+ KRA S
Sbjct: 133 DHIITMDLHASQIQGFFDIPVDNLCAEPAVLKWIKEQISDWRSCTIVSPDAGEVKRATSI 192
Query: 910 AERLRLGLAVIH 945
A+RL + A+IH
Sbjct: 193 ADRLNVDFALIH 204
>ref|XP_002700484.1| PREDICTED: PRPS2 protein-like [Bos taurus].
Length = 349
Score = 85.5 bits (210), Expect = 1e-16
Identities = 43/89 (48%), Positives = 62/89 (69%)
Frame = +1
Query: 409 ELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIM 588
+L++R+ +RLG ELGK + + +N ET VEI ESVRG+D++IIQ+ ++N +MELLIM
Sbjct: 260 DLSQRVADRLGLELGKVITKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLIM 319
Query: 589 AYALKTACARNIIGVIPYFPYSKQSKMRK 675
A K A + + VIP FPY++Q K K
Sbjct: 320 INACKIASSSRVTAVIPCFPYARQDKKDK 348
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,988,217
Number of extensions: 1346999
Number of successful extensions: 9108
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 8950
Number of HSP's successfully gapped: 10
Length of query: 459
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 353
Effective length of database: 14,174,046
Effective search space: 5003438238
Effective search space used: 5003438238
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002405
(1379 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849109.1| PREDICTED: similar to Phosphoribosyl pyrophosph... 466 e-157
Alignment gi|XP_858137.1| PREDICTED: similar to Phosphoribosyl pyrophosph... 457 e-154
Alignment gi|XP_858097.1| PREDICTED: similar to Phosphoribosyl pyrophosph... 442 e-149
Alignment gi|XP_858052.1| PREDICTED: similar to Phosphoribosyl pyrophosph... 466 e-143
Alignment gi|XP_546654.2| PREDICTED: similar to phosphoribosyl pyrophosph... 360 e-123
Alignment gi|XP_864392.1| PREDICTED: similar to phosphoribosyl pyrophosph... 352 e-121
Alignment gi|XP_864371.1| PREDICTED: similar to phosphoribosyl pyrophosph... 342 e-118
Alignment gi|XP_864306.1| PREDICTED: similar to phosphoribosyl pyrophosph... 341 e-117
Alignment gi|XP_864351.1| PREDICTED: similar to phosphoribosyl pyrophosph... 339 e-116
Alignment gi|XP_864284.1| PREDICTED: similar to phosphoribosyl pyrophosph... 339 e-103
>ref|XP_849109.1| PREDICTED: similar to Phosphoribosyl pyrophosphate
synthetase-associated protein 1 (PRPP
synthetase-associated protein 1) (39 kDa
phosphoribosypyrophosphate synthetase-associated protein)
(PAP39) isoform 1 [Canis familiaris].
Length = 385
Score = 466 bits (1200), Expect(2) = e-157
Identities = 237/240 (98%), Positives = 238/240 (99%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI
Sbjct: 30 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 89
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS
Sbjct: 90 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 149
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA
Sbjct: 150 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 209
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATVHPGLELPLMMAKEEAP 1068
AKRAQSYAERLRLGLAVIHGEAQC ELDMDDGRHSPPMVKNATVHPGLELPLMMAKE+ P
Sbjct: 210 AKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPP 269
Score = 107 bits (268), Expect(2) = e-157
Identities = 58/90 (64%), Positives = 63/90 (70%)
Frame = +2
Query: 1055 RKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGPR 1234
++KPPIT +SFVAAAEILK++GAYKIYVMATHGILS E PR
Sbjct: 265 KEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPR 324
Query: 1235 PDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
ESSIDEVVVTNTV HEVQKL CPKIKT
Sbjct: 325 LIEESSIDEVVVTNTVPHEVQKLQCPKIKT 354
>ref|XP_858137.1| PREDICTED: similar to Phosphoribosyl pyrophosphate
synthetase-associated protein 1 (PRPP
synthetase-associated protein 1) (39 kDa
phosphoribosypyrophosphate synthetase-associated protein)
(PAP39) isoform 6 [Canis familiaris].
Length = 398
Score = 457 bits (1176), Expect(2) = e-154
Identities = 237/253 (93%), Positives = 238/253 (94%), Gaps = 13/253 (5%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI
Sbjct: 30 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 89
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS
Sbjct: 90 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 149
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA
Sbjct: 150 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 209
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATVHPGLELP--------- 1041
AKRAQSYAERLRLGLAVIHGEAQC ELDMDDGRHSPPMVKNATVHPGLELP
Sbjct: 210 AKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPCKISSIFPQ 269
Query: 1042 ----LMMAKEEAP 1068
LMMAKE+ P
Sbjct: 270 LTLILMMAKEKPP 282
Score = 107 bits (268), Expect(2) = e-154
Identities = 58/90 (64%), Positives = 63/90 (70%)
Frame = +2
Query: 1055 RKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGPR 1234
++KPPIT +SFVAAAEILK++GAYKIYVMATHGILS E PR
Sbjct: 278 KEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPR 337
Query: 1235 PDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
ESSIDEVVVTNTV HEVQKL CPKIKT
Sbjct: 338 LIEESSIDEVVVTNTVPHEVQKLQCPKIKT 367
>ref|XP_858097.1| PREDICTED: similar to Phosphoribosyl pyrophosphate
synthetase-associated protein 1 (PRPP
synthetase-associated protein 1) (39 kDa
phosphoribosypyrophosphate synthetase-associated protein)
(PAP39) isoform 5 [Canis familiaris].
Length = 398
Score = 442 bits (1136), Expect(2) = e-149
Identities = 232/253 (91%), Positives = 234/253 (92%), Gaps = 13/253 (5%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI
Sbjct: 30 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 89
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS
Sbjct: 90 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 149
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA
Sbjct: 150 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 209
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATV--HPG----------- 1029
AKRAQSYAERLRLGLAVIHGEAQC ELDMDDGRHSPPMVKNAT HP
Sbjct: 210 AKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATPPRHPNFSARQLRCSQE 269
Query: 1030 LELPLMMAKEEAP 1068
L P+MMAKE+ P
Sbjct: 270 LGEPVMMAKEKPP 282
Score = 107 bits (268), Expect(2) = e-149
Identities = 58/90 (64%), Positives = 63/90 (70%)
Frame = +2
Query: 1055 RKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGPR 1234
++KPPIT +SFVAAAEILK++GAYKIYVMATHGILS E PR
Sbjct: 278 KEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPR 337
Query: 1235 PDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
ESSIDEVVVTNTV HEVQKL CPKIKT
Sbjct: 338 LIEESSIDEVVVTNTVPHEVQKLQCPKIKT 367
>ref|XP_858052.1| PREDICTED: similar to Phosphoribosyl pyrophosphate
synthetase-associated protein 1 (PRPP
synthetase-associated protein 1) (39 kDa
phosphoribosypyrophosphate synthetase-associated protein)
(PAP39) isoform 4 [Canis familiaris].
Length = 362
Score = 466 bits (1200), Expect(2) = e-143
Identities = 237/240 (98%), Positives = 238/240 (99%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI
Sbjct: 30 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 89
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS
Sbjct: 90 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 149
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA
Sbjct: 150 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 209
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATVHPGLELPLMMAKEEAP 1068
AKRAQSYAERLRLGLAVIHGEAQC ELDMDDGRHSPPMVKNATVHPGLELPLMMAKE+ P
Sbjct: 210 AKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPP 269
Score = 63.2 bits (152), Expect(2) = e-143
Identities = 40/90 (44%), Positives = 45/90 (50%)
Frame = +2
Query: 1055 RKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGPR 1234
++KPPIT +SFVAAAEILK++GAYKIYV
Sbjct: 265 KEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYV------------- 311
Query: 1235 PDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
VVTNTV HEVQKL CPKIKT
Sbjct: 312 ----------VVTNTVPHEVQKLQCPKIKT 331
>ref|XP_546654.2| PREDICTED: similar to phosphoribosyl pyrophosphate
synthetase-associated protein 2 isoform 1 [Canis
familiaris].
Length = 369
Score = 360 bits (925), Expect(2) = e-123
Identities = 178/241 (73%), Positives = 211/241 (87%), Gaps = 1/241 (0%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE N ETRV+I+ESVRG+D+
Sbjct: 13 MNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGKDV 72
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQT+ +DVNT +MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 73 FIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLAS 132
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
M+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +
Sbjct: 133 MMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPAS 192
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKN-ATVHPGLELPLMMAKEEA 1065
AKRAQS+AERLRLG+AVIHGEAQ AE D+ DGRHSPPMV++ A +HP LE+P+++ KE+
Sbjct: 193 AKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKP 252
Query: 1066 P 1068
P
Sbjct: 253 P 253
Score = 101 bits (251), Expect(2) = e-123
Identities = 51/91 (56%), Positives = 62/91 (68%)
Frame = +2
Query: 1052 PRKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGP 1231
P++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + P
Sbjct: 248 PKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAP 307
Query: 1232 RPDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
R ES+IDEVVVTNT+ HE+QKL CPKIKT
Sbjct: 308 RLIEESAIDEVVVTNTIPHEIQKLQCPKIKT 338
>ref|XP_864392.1| PREDICTED: similar to phosphoribosyl pyrophosphate
synthetase-associated protein 2 isoform 10 [Canis
familiaris].
Length = 388
Score = 352 bits (904), Expect(2) = e-121
Identities = 175/232 (75%), Positives = 204/232 (87%), Gaps = 1/232 (0%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE N ETRV+I+ESVRG+D+
Sbjct: 13 MNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGKDV 72
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQT+ +DVNT +MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 73 FIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLAS 132
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
M+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +
Sbjct: 133 MMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPAS 192
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKN-ATVHPGLELP 1041
AKRAQS+AERLRLG+AVIHGEAQ AE D+ DGRHSPPMV++ A +HP LE+P
Sbjct: 193 AKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIP 244
Score = 101 bits (251), Expect(2) = e-121
Identities = 51/91 (56%), Positives = 62/91 (68%)
Frame = +2
Query: 1052 PRKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGP 1231
P++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + P
Sbjct: 267 PKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAP 326
Query: 1232 RPDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
R ES+IDEVVVTNT+ HE+QKL CPKIKT
Sbjct: 327 RLIEESAIDEVVVTNTIPHEIQKLQCPKIKT 357
>ref|XP_864371.1| PREDICTED: similar to phosphoribosyl pyrophosphate
synthetase-associated protein 2 isoform 9 [Canis
familiaris].
Length = 381
Score = 342 bits (878), Expect(2) = e-118
Identities = 176/255 (69%), Positives = 207/255 (81%), Gaps = 15/255 (5%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE N ETRV+I+ESVRG+D+
Sbjct: 13 MNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGKDV 72
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQT+ +DVNT +MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 73 FIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLAS 132
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
M+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +
Sbjct: 133 MMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPAS 192
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVK---------------NATVH 1023
AKRAQS+AERLRLG+AVIHGEAQ AE D+ DGRHSPPMV+ N +
Sbjct: 193 AKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSRQRQREKQTPCREPNVGLD 252
Query: 1024 PGLELPLMMAKEEAP 1068
PG P+++ KE+ P
Sbjct: 253 PG--SPVLIPKEKPP 265
Score = 101 bits (251), Expect(2) = e-118
Identities = 51/91 (56%), Positives = 62/91 (68%)
Frame = +2
Query: 1052 PRKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGP 1231
P++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + P
Sbjct: 260 PKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAP 319
Query: 1232 RPDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
R ES+IDEVVVTNT+ HE+QKL CPKIKT
Sbjct: 320 RLIEESAIDEVVVTNTIPHEIQKLQCPKIKT 350
>ref|XP_864306.1| PREDICTED: similar to phosphoribosyl pyrophosphate
synthetase-associated protein 2 isoform 6 [Canis
familiaris].
Length = 373
Score = 341 bits (875), Expect(2) = e-117
Identities = 173/245 (70%), Positives = 203/245 (82%), Gaps = 5/245 (2%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE N ETRV+I+ESVRG+D+
Sbjct: 13 MNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGKDV 72
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQT+ +DVNT +MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 73 FIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLAS 132
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
M+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +
Sbjct: 133 MMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPAS 192
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATVHPGLELP-----LMMA 1053
AKRAQS+AERLRLG+AVIHGEAQ AE D+ DGRHSPPM + + P L++
Sbjct: 193 AKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMDSKSETYESRGKPVHTAFLLIP 252
Query: 1054 KEEAP 1068
KE+ P
Sbjct: 253 KEKPP 257
Score = 101 bits (251), Expect(2) = e-117
Identities = 51/91 (56%), Positives = 62/91 (68%)
Frame = +2
Query: 1052 PRKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGP 1231
P++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + P
Sbjct: 252 PKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAP 311
Query: 1232 RPDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
R ES+IDEVVVTNT+ HE+QKL CPKIKT
Sbjct: 312 RLIEESAIDEVVVTNTIPHEIQKLQCPKIKT 342
>ref|XP_864351.1| PREDICTED: similar to phosphoribosyl pyrophosphate
synthetase-associated protein 2 isoform 8 [Canis
familiaris].
Length = 363
Score = 339 bits (869), Expect(2) = e-116
Identities = 168/218 (77%), Positives = 193/218 (88%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE N ETRV+I+ESVRG+D+
Sbjct: 13 MNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGKDV 72
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQT+ +DVNT +MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 73 FIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLAS 132
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
M+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +
Sbjct: 133 MMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPAS 192
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPM 1002
AKRAQS+AERLRLG+AVIHGEAQ AE D+ DGRHSPPM
Sbjct: 193 AKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPM 230
Score = 98.6 bits (244), Expect(2) = e-116
Identities = 50/90 (55%), Positives = 61/90 (67%)
Frame = +2
Query: 1055 RKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGPR 1234
++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + PR
Sbjct: 243 KEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAPR 302
Query: 1235 PDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
ES+IDEVVVTNT+ HE+QKL CPKIKT
Sbjct: 303 LIEESAIDEVVVTNTIPHEIQKLQCPKIKT 332
>ref|XP_864284.1| PREDICTED: similar to phosphoribosyl pyrophosphate
synthetase-associated protein 2 isoform 5 [Canis
familiaris].
Length = 340
Score = 339 bits (869), Expect(2) = e-103
Identities = 168/218 (77%), Positives = 193/218 (88%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE N ETRV+I+ESVRG+D+
Sbjct: 13 MNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGKDV 72
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQT+ +DVNT +MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 73 FIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLAS 132
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
M+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +
Sbjct: 133 MMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPAS 192
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPM 1002
AKRAQS+AERLRLG+AVIHGEAQ AE D+ DGRHSPPM
Sbjct: 193 AKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPM 230
Score = 57.0 bits (136), Expect(2) = e-103
Identities = 35/90 (38%), Positives = 43/90 (47%)
Frame = +2
Query: 1055 RKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGPR 1234
++KPPIT SF+AAAE LK++GAYKI+V
Sbjct: 243 KEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFV------------- 289
Query: 1235 PDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
VVTNT+ HE+QKL CPKIKT
Sbjct: 290 ----------VVTNTIPHEIQKLQCPKIKT 309
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,286,493
Number of extensions: 1400952
Number of successful extensions: 9429
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 9289
Number of HSP's successfully gapped: 45
Length of query: 459
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 353
Effective length of database: 15,340,888
Effective search space: 5415333464
Effective search space used: 5415333464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002405
(1379 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002757.2| phosphoribosyl pyrophosphate synthase-associate... 466 e-157
Alignment gi|NP_002758.1| phosphoribosyl pyrophosphate synthase-associate... 360 e-123
Alignment gi|NP_001230865.1| phosphoribosyl pyrophosphate synthase-associ... 286 e-101
Alignment gi|NP_001230869.1| phosphoribosyl pyrophosphate synthase-associ... 360 1e-99
Alignment gi|NP_001230870.1| phosphoribosyl pyrophosphate synthase-associ... 269 6e-96
Alignment gi|NP_001230871.1| phosphoribosyl pyrophosphate synthase-associ... 269 6e-96
Alignment gi|NP_787082.1| ribose-phosphate pyrophosphokinase 3 [Homo sapi... 174 1e-43
Alignment gi|NP_002756.1| ribose-phosphate pyrophosphokinase 2 isoform 2 ... 172 5e-43
Alignment gi|NP_002755.1| ribose-phosphate pyrophosphokinase 1 isoform 1 ... 172 9e-43
Alignment gi|NP_001034180.1| ribose-phosphate pyrophosphokinase 2 isoform... 171 1e-42
>ref|NP_002757.2| phosphoribosyl pyrophosphate synthase-associated protein 1 [Homo
sapiens].
Length = 385
Score = 466 bits (1200), Expect(2) = e-157
Identities = 237/240 (98%), Positives = 238/240 (99%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI
Sbjct: 30 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 89
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS
Sbjct: 90 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 149
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA
Sbjct: 150 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 209
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATVHPGLELPLMMAKEEAP 1068
AKRAQSYAERLRLGLAVIHGEAQC ELDMDDGRHSPPMVKNATVHPGLELPLMMAKE+ P
Sbjct: 210 AKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPP 269
Score = 107 bits (267), Expect(2) = e-157
Identities = 57/90 (63%), Positives = 63/90 (70%)
Frame = +2
Query: 1055 RKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGPR 1234
++KPPIT +SFVAAAEILK++GAYKIYVMATHGILS E PR
Sbjct: 265 KEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPR 324
Query: 1235 PDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
ESS+DEVVVTNTV HEVQKL CPKIKT
Sbjct: 325 LIEESSVDEVVVTNTVPHEVQKLQCPKIKT 354
>ref|NP_002758.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform 1
[Homo sapiens].
Length = 369
Score = 360 bits (925), Expect(2) = e-123
Identities = 178/241 (73%), Positives = 211/241 (87%), Gaps = 1/241 (0%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE N ETRV+I+ESVRG+D+
Sbjct: 13 MNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGKDV 72
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQT+ +DVNT +MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 73 FIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLAS 132
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
M+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +
Sbjct: 133 MMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPAS 192
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKN-ATVHPGLELPLMMAKEEA 1065
AKRAQS+AERLRLG+AVIHGEAQ AE D+ DGRHSPPMV++ A +HP LE+P+++ KE+
Sbjct: 193 AKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKP 252
Query: 1066 P 1068
P
Sbjct: 253 P 253
Score = 102 bits (253), Expect(2) = e-123
Identities = 52/91 (57%), Positives = 62/91 (68%)
Frame = +2
Query: 1052 PRKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGP 1231
P++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + P
Sbjct: 248 PKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAP 307
Query: 1232 RPDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
R ES+IDEVVVTNT+ HEVQKL CPKIKT
Sbjct: 308 RRIEESAIDEVVVTNTIPHEVQKLQCPKIKT 338
>ref|NP_001230865.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform 2
[Homo sapiens].
Length = 329
Score = 286 bits (733), Expect(2) = e-101
Identities = 151/241 (62%), Positives = 177/241 (73%), Gaps = 1/241 (0%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I E
Sbjct: 13 MNITKGGLVLFSANSNSSCMELSKKIAE-------------------------------- 40
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
DVNT +MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 41 --------DVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLAS 92
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
M+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +
Sbjct: 93 MMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPAS 152
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKN-ATVHPGLELPLMMAKEEA 1065
AKRAQS+AERLRLG+AVIHGEAQ AE D+ DGRHSPPMV++ A +HP LE+P+++ KE+
Sbjct: 153 AKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKP 212
Query: 1066 P 1068
P
Sbjct: 213 P 213
Score = 102 bits (253), Expect(2) = e-101
Identities = 52/91 (57%), Positives = 62/91 (68%)
Frame = +2
Query: 1052 PRKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGP 1231
P++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + P
Sbjct: 208 PKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAP 267
Query: 1232 RPDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
R ES+IDEVVVTNT+ HEVQKL CPKIKT
Sbjct: 268 RRIEESAIDEVVVTNTIPHEVQKLQCPKIKT 298
>ref|NP_001230869.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform 3
[Homo sapiens].
Length = 320
Score = 360 bits (925), Expect = 1e-99
Identities = 178/241 (73%), Positives = 211/241 (87%), Gaps = 1/241 (0%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE N ETRV+I+ESVRG+D+
Sbjct: 13 MNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGKDV 72
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQT+ +DVNT +MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 73 FIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLAS 132
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
M+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +
Sbjct: 133 MMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPAS 192
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKN-ATVHPGLELPLMMAKEEA 1065
AKRAQS+AERLRLG+AVIHGEAQ AE D+ DGRHSPPMV++ A +HP LE+P+++ KE+
Sbjct: 193 AKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKP 252
Query: 1066 P 1068
P
Sbjct: 253 P 253
>ref|NP_001230870.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform 4
[Homo sapiens].
Length = 283
Score = 269 bits (687), Expect(2) = 6e-96
Identities = 133/167 (79%), Positives = 152/167 (91%), Gaps = 1/167 (0%)
Frame = +1
Query: 571 MELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITMD 750
MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLASM+ KAGLTH+ITMD
Sbjct: 1 MELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD 60
Query: 751 LHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLG 930
LHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +AKRAQS+AERLRLG
Sbjct: 61 LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG 120
Query: 931 LAVIHGEAQCAELDMDDGRHSPPMVKN-ATVHPGLELPLMMAKEEAP 1068
+AVIHGEAQ AE D+ DGRHSPPMV++ A +HP LE+P+++ KE+ P
Sbjct: 121 IAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPP 167
Score = 102 bits (253), Expect(2) = 6e-96
Identities = 52/91 (57%), Positives = 62/91 (68%)
Frame = +2
Query: 1052 PRKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGP 1231
P++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + P
Sbjct: 162 PKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAP 221
Query: 1232 RPDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
R ES+IDEVVVTNT+ HEVQKL CPKIKT
Sbjct: 222 RRIEESAIDEVVVTNTIPHEVQKLQCPKIKT 252
>ref|NP_001230871.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform 5
[Homo sapiens].
Length = 283
Score = 269 bits (687), Expect(2) = 6e-96
Identities = 133/167 (79%), Positives = 152/167 (91%), Gaps = 1/167 (0%)
Frame = +1
Query: 571 MELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITMD 750
MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLASM+ KAGLTH+ITMD
Sbjct: 1 MELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD 60
Query: 751 LHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLG 930
LHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +AKRAQS+AERLRLG
Sbjct: 61 LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG 120
Query: 931 LAVIHGEAQCAELDMDDGRHSPPMVKN-ATVHPGLELPLMMAKEEAP 1068
+AVIHGEAQ AE D+ DGRHSPPMV++ A +HP LE+P+++ KE+ P
Sbjct: 121 IAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPP 167
Score = 102 bits (253), Expect(2) = 6e-96
Identities = 52/91 (57%), Positives = 62/91 (68%)
Frame = +2
Query: 1052 PRKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGP 1231
P++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + P
Sbjct: 162 PKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAP 221
Query: 1232 RPDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
R ES+IDEVVVTNT+ HEVQKL CPKIKT
Sbjct: 222 RRIEESAIDEVVVTNTIPHEVQKLQCPKIKT 252
>ref|NP_787082.1| ribose-phosphate pyrophosphokinase 3 [Homo sapiens].
Length = 318
Score = 174 bits (442), Expect = 1e-43
Identities = 95/198 (47%), Positives = 134/198 (67%), Gaps = 1/198 (0%)
Frame = +1
Query: 373 RVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPR 552
++FS +S +L+++I +RLG ELGK V + +N ET VEI ESVRG+D++I+Q+
Sbjct: 5 KIFSGSSHQ---DLSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGCG 61
Query: 553 DVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRK-RGSIVCKLLASMLAKAGL 729
++N ++MELLIM A K A A + VIP FPY++Q K K R I KL+A+ML+ AG
Sbjct: 62 EINDSLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRSPISAKLVANMLSIAGA 121
Query: 730 THIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSY 909
HIITMDLH +IQGFF PVDNL A P +L++I+E IP ++N +IV+ AKR S
Sbjct: 122 DHIITMDLHASQIQGFFDIPVDNLYAEPTVLKWIRENIPEWKNCIIVSPDAGGAKRVTSI 181
Query: 910 AERLRLGLAVIHGEAQCA 963
A++L + A+IH E + A
Sbjct: 182 ADQLNVDFALIHKERKKA 199
>ref|NP_002756.1| ribose-phosphate pyrophosphokinase 2 isoform 2 [Homo sapiens].
Length = 318
Score = 172 bits (437), Expect = 5e-43
Identities = 93/186 (50%), Positives = 126/186 (67%), Gaps = 1/186 (0%)
Frame = +1
Query: 409 ELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIM 588
+L++R+ +RLG ELGK V + +N ET VEI ESVRG+D++IIQ+ ++N +MELLIM
Sbjct: 14 DLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLIM 73
Query: 589 AYALKTACARNIIGVIPYFPYSKQSKMRK-RGSIVCKLLASMLAKAGLTHIITMDLHQKE 765
A K A + + VIP FPY++Q K K R I KL+A+ML+ AG HIITMDLH +
Sbjct: 74 INACKIASSSRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQ 133
Query: 766 IQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIH 945
IQGFF PVDNL A P +LQ+I+E I ++N +IV+ AKR S A+RL + A+IH
Sbjct: 134 IQGFFDIPVDNLYAEPAVLQWIRENIAEWKNCIIVSPDAGGAKRVTSIADRLNVEFALIH 193
Query: 946 GEAQCA 963
E + A
Sbjct: 194 KERKKA 199
>ref|NP_002755.1| ribose-phosphate pyrophosphokinase 1 isoform 1 [Homo sapiens].
Length = 318
Score = 172 bits (435), Expect = 9e-43
Identities = 96/198 (48%), Positives = 131/198 (66%), Gaps = 1/198 (0%)
Frame = +1
Query: 373 RVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPR 552
++FS +S +L+++I +RLG ELGK V + +N ET VEI ESVRG+D++I+Q+
Sbjct: 5 KIFSGSSHQ---DLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCG 61
Query: 553 DVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRK-RGSIVCKLLASMLAKAGL 729
++N +MELLIM A K A A + VIP FPY++Q K K R I KL+A+ML+ AG
Sbjct: 62 EINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGA 121
Query: 730 THIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSY 909
HIITMDLH +IQGFF PVDNL A P +L++I+E I +RN IV+ AKR S
Sbjct: 122 DHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSI 181
Query: 910 AERLRLGLAVIHGEAQCA 963
A+RL + A+IH E + A
Sbjct: 182 ADRLNVDFALIHKERKKA 199
>ref|NP_001034180.1| ribose-phosphate pyrophosphokinase 2 isoform 1 [Homo sapiens].
Length = 321
Score = 171 bits (434), Expect = 1e-42
Identities = 93/189 (49%), Positives = 126/189 (66%), Gaps = 4/189 (2%)
Frame = +1
Query: 409 ELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIM 588
+L++R+ +RLG ELGK V + +N ET VEI ESVRG+D++IIQ+ ++N +MELLIM
Sbjct: 14 DLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLIM 73
Query: 589 AYALKTACARNIIGVIPYFPYSKQSKMRK----RGSIVCKLLASMLAKAGLTHIITMDLH 756
A K A + + VIP FPY++Q K K R I KL+A+ML+ AG HIITMDLH
Sbjct: 74 INACKIASSSRVTAVIPCFPYARQDKKDKVGESRAPISAKLVANMLSVAGADHIITMDLH 133
Query: 757 QKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLA 936
+IQGFF PVDNL A P +LQ+I+E I ++N +IV+ AKR S A+RL + A
Sbjct: 134 ASQIQGFFDIPVDNLYAEPAVLQWIRENIAEWKNCIIVSPDAGGAKRVTSIADRLNVEFA 193
Query: 937 VIHGEAQCA 963
+IH E + A
Sbjct: 194 LIHKERKKA 202
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,991,765
Number of extensions: 1350202
Number of successful extensions: 8153
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 8005
Number of HSP's successfully gapped: 16
Length of query: 459
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 353
Effective length of database: 14,802,980
Effective search space: 5225451940
Effective search space used: 5225451940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002405
(1379 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080640.1| phosphoribosyl pyrophosphate synthase-associate... 466 e-156
Alignment gi|NP_001157714.1| phosphoribosyl pyrophosphate synthase-associ... 361 e-123
Alignment gi|NP_659055.1| phosphoribosyl pyrophosphate synthase-associate... 361 e-123
Alignment gi|NP_001157716.1| phosphoribosyl pyrophosphate synthase-associ... 269 8e-96
Alignment gi|NP_001157715.1| phosphoribosyl pyrophosphate synthase-associ... 269 8e-96
Alignment gi|NP_080938.1| ribose-phosphate pyrophosphokinase 2 [Mus muscu... 174 2e-43
Alignment gi|NP_001032835.2| hypothetical protein LOC328099 [Mus musculus]. 172 7e-43
Alignment gi|NP_067438.1| ribose-phosphate pyrophosphokinase 1 [Mus muscu... 172 7e-43
Alignment gi|NP_083570.1| phosphoribosyl pyrophosphate synthetase 1-like ... 171 1e-42
>ref|NP_080640.1| phosphoribosyl pyrophosphate synthase-associated protein 1 [Mus
musculus].
Length = 385
Score = 466 bits (1200), Expect(2) = e-156
Identities = 237/240 (98%), Positives = 238/240 (99%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI
Sbjct: 30 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 89
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS
Sbjct: 90 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 149
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA
Sbjct: 150 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 209
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATVHPGLELPLMMAKEEAP 1068
AKRAQSYAERLRLGLAVIHGEAQC ELDMDDGRHSPPMVKNATVHPGLELPLMMAKE+ P
Sbjct: 210 AKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPP 269
Score = 104 bits (260), Expect(2) = e-156
Identities = 56/90 (62%), Positives = 62/90 (68%)
Frame = +2
Query: 1055 RKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGPR 1234
++KPPIT +SFVAAAEILK++GAYKIYVMATHGILS E PR
Sbjct: 265 KEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPR 324
Query: 1235 PDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
ES IDEVVVTNTV HE+QKL CPKIKT
Sbjct: 325 LIEESPIDEVVVTNTVPHELQKLQCPKIKT 354
>ref|NP_001157714.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform a
[Mus musculus].
Length = 369
Score = 361 bits (926), Expect(2) = e-123
Identities = 179/241 (74%), Positives = 211/241 (87%), Gaps = 1/241 (0%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE N ETRV+I+ESVRG+D+
Sbjct: 13 MNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGKDV 72
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQTI +DVNT +MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 73 FIIQTISKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLAS 132
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
M+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +
Sbjct: 133 MMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPAS 192
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKN-ATVHPGLELPLMMAKEEA 1065
AKRAQS+AERLRLG+AVIHGEAQ AE D+ DGRHSPPMV++ A +HP LE+P+++ KE+
Sbjct: 193 AKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKP 252
Query: 1066 P 1068
P
Sbjct: 253 P 253
Score = 101 bits (251), Expect(2) = e-123
Identities = 51/91 (56%), Positives = 62/91 (68%)
Frame = +2
Query: 1052 PRKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGP 1231
P++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + P
Sbjct: 248 PKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAP 307
Query: 1232 RPDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
R ES+IDEVVVTNT+ HE+QKL CPKIKT
Sbjct: 308 RLIEESAIDEVVVTNTIPHEIQKLQCPKIKT 338
>ref|NP_659055.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform a
[Mus musculus].
Length = 369
Score = 361 bits (926), Expect(2) = e-123
Identities = 179/241 (74%), Positives = 211/241 (87%), Gaps = 1/241 (0%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE N ETRV+I+ESVRG+D+
Sbjct: 13 MNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETRVQIQESVRGKDV 72
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQTI +DVNT +MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 73 FIIQTISKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLAS 132
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
M+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +
Sbjct: 133 MMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPAS 192
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKN-ATVHPGLELPLMMAKEEA 1065
AKRAQS+AERLRLG+AVIHGEAQ AE D+ DGRHSPPMV++ A +HP LE+P+++ KE+
Sbjct: 193 AKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKP 252
Query: 1066 P 1068
P
Sbjct: 253 P 253
Score = 101 bits (251), Expect(2) = e-123
Identities = 51/91 (56%), Positives = 62/91 (68%)
Frame = +2
Query: 1052 PRKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGP 1231
P++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + P
Sbjct: 248 PKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAP 307
Query: 1232 RPDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
R ES+IDEVVVTNT+ HE+QKL CPKIKT
Sbjct: 308 RLIEESAIDEVVVTNTIPHEIQKLQCPKIKT 338
>ref|NP_001157716.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform b
[Mus musculus].
Length = 283
Score = 269 bits (687), Expect(2) = 8e-96
Identities = 133/167 (79%), Positives = 152/167 (91%), Gaps = 1/167 (0%)
Frame = +1
Query: 571 MELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITMD 750
MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLASM+ KAGLTH+ITMD
Sbjct: 1 MELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD 60
Query: 751 LHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLG 930
LHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +AKRAQS+AERLRLG
Sbjct: 61 LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG 120
Query: 931 LAVIHGEAQCAELDMDDGRHSPPMVKN-ATVHPGLELPLMMAKEEAP 1068
+AVIHGEAQ AE D+ DGRHSPPMV++ A +HP LE+P+++ KE+ P
Sbjct: 121 IAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPP 167
Score = 101 bits (251), Expect(2) = 8e-96
Identities = 51/91 (56%), Positives = 62/91 (68%)
Frame = +2
Query: 1052 PRKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGP 1231
P++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + P
Sbjct: 162 PKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAP 221
Query: 1232 RPDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
R ES+IDEVVVTNT+ HE+QKL CPKIKT
Sbjct: 222 RLIEESAIDEVVVTNTIPHEIQKLQCPKIKT 252
>ref|NP_001157715.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform b
[Mus musculus].
Length = 283
Score = 269 bits (687), Expect(2) = 8e-96
Identities = 133/167 (79%), Positives = 152/167 (91%), Gaps = 1/167 (0%)
Frame = +1
Query: 571 MELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITMD 750
MELLIM YA KT+CA++IIGVIPYFPYSKQ KMRKRGSIV KLLASM+ KAGLTH+ITMD
Sbjct: 1 MELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD 60
Query: 751 LHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLG 930
LHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +AKRAQS+AERLRLG
Sbjct: 61 LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG 120
Query: 931 LAVIHGEAQCAELDMDDGRHSPPMVKN-ATVHPGLELPLMMAKEEAP 1068
+AVIHGEAQ AE D+ DGRHSPPMV++ A +HP LE+P+++ KE+ P
Sbjct: 121 IAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPP 167
Score = 101 bits (251), Expect(2) = 8e-96
Identities = 51/91 (56%), Positives = 62/91 (68%)
Frame = +2
Query: 1052 PRKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGP 1231
P++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + P
Sbjct: 162 PKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAP 221
Query: 1232 RPDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
R ES+IDEVVVTNT+ HE+QKL CPKIKT
Sbjct: 222 RLIEESAIDEVVVTNTIPHEIQKLQCPKIKT 252
>ref|NP_080938.1| ribose-phosphate pyrophosphokinase 2 [Mus musculus].
Length = 318
Score = 174 bits (440), Expect = 2e-43
Identities = 94/186 (50%), Positives = 126/186 (67%), Gaps = 1/186 (0%)
Frame = +1
Query: 409 ELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIM 588
+L++R+ +RLG ELGK V + +N ET VEI ESVRG+D++IIQ+ ++N +MELLIM
Sbjct: 14 DLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLIM 73
Query: 589 AYALKTACARNIIGVIPYFPYSKQSKMRK-RGSIVCKLLASMLAKAGLTHIITMDLHQKE 765
A K A + + VIP FPY++Q K K R I KL+A+ML+ AG HIITMDLH +
Sbjct: 74 INACKIASSSRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQ 133
Query: 766 IQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIH 945
IQGFF PVDNL A P +LQ+I+E I +RN +IV+ AKR S A+RL + A+IH
Sbjct: 134 IQGFFDIPVDNLYAEPAVLQWIRENITEWRNCIIVSPDAGGAKRVTSIADRLNVEFALIH 193
Query: 946 GEAQCA 963
E + A
Sbjct: 194 KERKKA 199
>ref|NP_001032835.2| hypothetical protein LOC328099 [Mus musculus].
Length = 318
Score = 172 bits (435), Expect = 7e-43
Identities = 96/198 (48%), Positives = 131/198 (66%), Gaps = 1/198 (0%)
Frame = +1
Query: 373 RVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPR 552
++FS +S +L+++I +RLG ELGK V + +N ET VEI ESVRG+D++I+Q+
Sbjct: 5 KIFSGSSHQ---DLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCG 61
Query: 553 DVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRK-RGSIVCKLLASMLAKAGL 729
++N +MELLIM A K A A + VIP FPY++Q K K R I KL+A+ML+ AG
Sbjct: 62 EINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGA 121
Query: 730 THIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSY 909
HIITMDLH +IQGFF PVDNL A P +L++I+E I +RN IV+ AKR S
Sbjct: 122 DHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSI 181
Query: 910 AERLRLGLAVIHGEAQCA 963
A+RL + A+IH E + A
Sbjct: 182 ADRLNVDFALIHKERKKA 199
>ref|NP_067438.1| ribose-phosphate pyrophosphokinase 1 [Mus musculus].
Length = 318
Score = 172 bits (435), Expect = 7e-43
Identities = 96/198 (48%), Positives = 131/198 (66%), Gaps = 1/198 (0%)
Frame = +1
Query: 373 RVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPR 552
++FS +S +L+++I +RLG ELGK V + +N ET VEI ESVRG+D++I+Q+
Sbjct: 5 KIFSGSSHQ---DLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCG 61
Query: 553 DVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRK-RGSIVCKLLASMLAKAGL 729
++N +MELLIM A K A A + VIP FPY++Q K K R I KL+A+ML+ AG
Sbjct: 62 EINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGA 121
Query: 730 THIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSY 909
HIITMDLH +IQGFF PVDNL A P +L++I+E I +RN IV+ AKR S
Sbjct: 122 DHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSI 181
Query: 910 AERLRLGLAVIHGEAQCA 963
A+RL + A+IH E + A
Sbjct: 182 ADRLNVDFALIHKERKKA 199
>ref|NP_083570.1| phosphoribosyl pyrophosphate synthetase 1-like 1 [Mus musculus].
Length = 318
Score = 171 bits (433), Expect = 1e-42
Identities = 96/198 (48%), Positives = 132/198 (66%), Gaps = 1/198 (0%)
Frame = +1
Query: 373 RVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPR 552
++FS +S +L+++ITERLG EL K V + +N ET VEI ESVRG+D++I+Q+
Sbjct: 5 KLFSGSSHQ---DLSQKITERLGLELSKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCG 61
Query: 553 DVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRK-RGSIVCKLLASMLAKAGL 729
++N ++MELLIM A K A A + VIP FPY++Q K K R I KL+A+ML+ AG
Sbjct: 62 EINDSLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSIAGA 121
Query: 730 THIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSY 909
HIITMDLH +IQGFF PVDNL A P +L++I+E I ++RN IV+ AKR S
Sbjct: 122 DHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENISDWRNCTIVSPDAGGAKRVTSI 181
Query: 910 AERLRLGLAVIHGEAQCA 963
A+ L + A+IH E + A
Sbjct: 182 ADHLNVDFALIHKERKKA 199
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,183,461
Number of extensions: 1107734
Number of successful extensions: 6342
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6219
Number of HSP's successfully gapped: 14
Length of query: 459
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 354
Effective length of database: 12,463,779
Effective search space: 4412177766
Effective search space used: 4412177766
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002405
(1379 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131222.1| PREDICTED: phosphoribosyl pyrophosphate synt... 468 e-157
Alignment gi|XP_003361489.1| PREDICTED: phosphoribosyl pyrophosphate synt... 176 3e-44
Alignment gi|XP_003358354.1| PREDICTED: phosphoribosyl pyrophosphate synt... 176 3e-44
Alignment gi|XP_003132086.2| PREDICTED: phosphoribosyl pyrophosphate synt... 176 3e-44
Alignment gi|NP_001230730.1| phosphoribosyl pyrophosphate synthetase 2 [S... 172 3e-43
Alignment gi|XP_003135349.1| PREDICTED: ribose-phosphate pyrophosphokinas... 172 5e-43
Alignment gi|XP_003130238.1| PREDICTED: ribose-phosphate pyrophosphokinas... 171 7e-43
Alignment gi|XP_003132090.2| PREDICTED: hypothetical protein LOC100511960... 84 8e-30
>ref|XP_003131222.1| PREDICTED: phosphoribosyl pyrophosphate synthase-associated protein 1
[Sus scrofa].
Length = 385
Score = 468 bits (1204), Expect(2) = e-157
Identities = 238/240 (99%), Positives = 239/240 (99%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI
Sbjct: 30 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 89
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS
Sbjct: 90 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 149
Query: 709 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 888
MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA
Sbjct: 150 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 209
Query: 889 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATVHPGLELPLMMAKEEAP 1068
AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATVHPGLELPLMMAKE+ P
Sbjct: 210 AKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPP 269
Score = 107 bits (268), Expect(2) = e-157
Identities = 58/90 (64%), Positives = 63/90 (70%)
Frame = +2
Query: 1055 RKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGPR 1234
++KPPIT +SFVAAAEILK++GAYKIYVMATHGILS E PR
Sbjct: 265 KEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPR 324
Query: 1235 PDRESSIDEVVVTNTVLHEVQKLXCPKIKT 1324
ESSIDEVVVTNTV HEVQKL CPKIKT
Sbjct: 325 LIEESSIDEVVVTNTVPHEVQKLQCPKIKT 354
>ref|XP_003361489.1| PREDICTED: phosphoribosyl pyrophosphate synthase-associated protein
2-like [Sus scrofa].
Length = 175
Score = 176 bits (446), Expect = 3e-44
Identities = 85/126 (67%), Positives = 105/126 (83%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE + ETRV+I+ESVRG+D+
Sbjct: 13 MNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDV 72
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQT+ +DVNT +MELLIM YA KT+CA+++ GVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 73 FIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGSIVSKLLAS 132
Query: 709 MLAKAG 726
M+ KAG
Sbjct: 133 MMCKAG 138
>ref|XP_003358354.1| PREDICTED: phosphoribosyl pyrophosphate synthase-associated protein
2-like isoform 2 [Sus scrofa].
Length = 147
Score = 176 bits (446), Expect = 3e-44
Identities = 85/126 (67%), Positives = 105/126 (83%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE + ETRV+I+ESVRG+D+
Sbjct: 13 MNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDV 72
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQT+ +DVNT +MELLIM YA KT+CA+++ GVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 73 FIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGSIVSKLLAS 132
Query: 709 MLAKAG 726
M+ KAG
Sbjct: 133 MMCKAG 138
>ref|XP_003132086.2| PREDICTED: phosphoribosyl pyrophosphate synthase-associated protein
2-like isoform 1 [Sus scrofa].
Length = 147
Score = 176 bits (446), Expect = 3e-44
Identities = 85/126 (67%), Positives = 105/126 (83%)
Frame = +1
Query: 349 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDI 528
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE + ETRV+I+ESVRG+D+
Sbjct: 13 MNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDV 72
Query: 529 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 708
FIIQT+ +DVNT +MELLIM YA KT+CA+++ GVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 73 FIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGSIVSKLLAS 132
Query: 709 MLAKAG 726
M+ KAG
Sbjct: 133 MMCKAG 138
>ref|NP_001230730.1| phosphoribosyl pyrophosphate synthetase 2 [Sus scrofa].
Length = 318
Score = 172 bits (437), Expect = 3e-43
Identities = 93/186 (50%), Positives = 126/186 (67%), Gaps = 1/186 (0%)
Frame = +1
Query: 409 ELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIM 588
+L++R+ +RLG ELGK V + +N ET VEI ESVRG+D++IIQ+ ++N +MELLIM
Sbjct: 14 DLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLIM 73
Query: 589 AYALKTACARNIIGVIPYFPYSKQSKMRK-RGSIVCKLLASMLAKAGLTHIITMDLHQKE 765
A K A + + VIP FPY++Q K K R I KL+A+ML+ AG HIITMDLH +
Sbjct: 74 INACKIASSSRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQ 133
Query: 766 IQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIH 945
IQGFF P+DNL A P +LQ+I+E I +RN +IV+ AKR S A+RL + A+IH
Sbjct: 134 IQGFFDIPMDNLYAEPAVLQWIRENIAEWRNCIIVSPDAGGAKRVTSIADRLNVEFALIH 193
Query: 946 GEAQCA 963
E + A
Sbjct: 194 KERKKA 199
>ref|XP_003135349.1| PREDICTED: ribose-phosphate pyrophosphokinase 1-like [Sus scrofa].
Length = 318
Score = 172 bits (435), Expect = 5e-43
Identities = 96/198 (48%), Positives = 131/198 (66%), Gaps = 1/198 (0%)
Frame = +1
Query: 373 RVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPR 552
++FS +S +L+++I +RLG ELGK V + +N ET VEI ESVRG+D++I+Q+
Sbjct: 5 KIFSGSSHQ---DLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCG 61
Query: 553 DVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRK-RGSIVCKLLASMLAKAGL 729
++N +MELLIM A K A A + VIP FPY++Q K K R I KL+A+ML+ AG
Sbjct: 62 EINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGA 121
Query: 730 THIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSY 909
HIITMDLH +IQGFF PVDNL A P +L++I+E I +RN IV+ AKR S
Sbjct: 122 DHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSI 181
Query: 910 AERLRLGLAVIHGEAQCA 963
A+RL + A+IH E + A
Sbjct: 182 ADRLNVDFALIHKERKKA 199
>ref|XP_003130238.1| PREDICTED: ribose-phosphate pyrophosphokinase 1-like [Sus scrofa].
Length = 318
Score = 171 bits (434), Expect = 7e-43
Identities = 96/198 (48%), Positives = 132/198 (66%), Gaps = 1/198 (0%)
Frame = +1
Query: 373 RVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPR 552
++FS +S +L+++I RLG +LGK V + +N ET VEI ESVRG+D++I+Q+
Sbjct: 5 KIFSGSSHQ---DLSQKIAGRLGLKLGKVVTKKFSNQETCVEIGESVRGEDVYIMQSGCG 61
Query: 553 DVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRK-RGSIVCKLLASMLAKAGL 729
++N +MELLIM A KTA A + VIP FPY++Q K K + I KL+A+ML+ AG
Sbjct: 62 EINDNLMELLIMINACKTASASRVTAVIPCFPYARQDKKDKNQAPISAKLVANMLSVAGA 121
Query: 730 THIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSY 909
HIITMDLH +IQGFF PVDNL A P +L++I+E I +RN IV+ D AKR S
Sbjct: 122 DHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENISEWRNCTIVSPDADGAKRVTSI 181
Query: 910 AERLRLGLAVIHGEAQCA 963
A+RL + A+IH E + A
Sbjct: 182 ADRLNVDFALIHKEKKKA 199
>ref|XP_003132090.2| PREDICTED: hypothetical protein LOC100511960 [Sus scrofa].
Length = 459
Score = 83.6 bits (205), Expect(2) = 8e-30
Identities = 40/62 (64%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
Frame = +1
Query: 886 AAKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKN-ATVHPGLELPLMMAKEE 1062
A AQS+AERLRLG+AVIHGEAQ AE D+ DGRHSPPMV++ A +HP LE+P+++ KE+
Sbjct: 333 ARDAAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSAAAIHPSLEIPMLIPKEK 392
Query: 1063 AP 1068
P
Sbjct: 393 PP 394
Score = 65.9 bits (159), Expect(2) = 8e-30
Identities = 34/70 (48%), Positives = 43/70 (61%)
Frame = +2
Query: 1052 PRKKPPITXXXXXXXXXXXXXXXXXXXXKSFVAAAEILKKKGAYKIYVMATHGILSREGP 1231
P++KPPIT SF+AAAE LK++GAYKI+VMATHG+LS + P
Sbjct: 389 PKEKPPITVVGDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLSSDAP 448
Query: 1232 RPDRESSIDE 1261
R ES+IDE
Sbjct: 449 RLIEESAIDE 458
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,027,459
Number of extensions: 872759
Number of successful extensions: 6071
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5973
Number of HSP's successfully gapped: 10
Length of query: 459
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 357
Effective length of database: 8,804,438
Effective search space: 3143184366
Effective search space used: 3143184366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002405
(1379 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 759 0.0
gb|GL894474.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 147 2e-32
Sscrofa_Chr13 76 6e-11
>Sscrofa_Chr12
|| Length = 63588571
Score = 759 bits (383), Expect = 0.0
Identities = 383/383 (100%)
Strand = Plus / Plus
Query: 50 ccgggccacaggtttggaggtggttgcggcgcaggtctcaacaagctccgggggagccag 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5047830 ccgggccacaggtttggaggtggttgcggcgcaggtctcaacaagctccgggggagccag 5047889
Query: 110 aaccccggtggcctttgggacgaggcgggtaggggtctcgggcctctccgctcctgtgcc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5047890 aaccccggtggcctttgggacgaggcgggtaggggtctcgggcctctccgctcctgtgcc 5047949
Query: 170 ggtgcccagccgggcctcgcggccgcctcctcgcaaccgctcccccgtgcagtcccgcgc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5047950 ggtgcccagccgggcctcgcggccgcctcctcgcaaccgctcccccgtgcagtcccgcgc 5048009
Query: 230 gggcccgctgtaactgcgcgccgggccggacgatgcccaagaagctgctgctgctgcccc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5048010 gggcccgctgtaactgcgcgccgggccggacgatgcccaagaagctgctgctgctgcccc 5048069
Query: 290 cgctctccgtgtcctccgctttccgcgccccgcgagcctgccctgcctcccgcccggcca 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5048070 cgctctccgtgtcctccgctttccgcgccccgcgagcctgccctgcctcccgcccggcca 5048129
Query: 350 tgaacgctgcccgcaccggctaccgagtcttctcggccaactccacggccgcctgcaccg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5048130 tgaacgctgcccgcaccggctaccgagtcttctcggccaactccacggccgcctgcaccg 5048189
Query: 410 agctggccaagcgcatcaccgag 432
|||||||||||||||||||||||
Sbjct: 5048190 agctggccaagcgcatcaccgag 5048212
Score = 353 bits (178), Expect = 2e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 549 cagagacgtgaacacggccgtgatggagctgctgatcatggcctacgcgctgaagacggc 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5063506 cagagacgtgaacacggccgtgatggagctgctgatcatggcctacgcgctgaagacggc 5063565
Query: 609 ctgtgccaggaacatcatcggcgtcatcccctacttcccctacagcaagcagagcaagat 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5063566 ctgtgccaggaacatcatcggcgtcatcccctacttcccctacagcaagcagagcaagat 5063625
Query: 669 gcgcaagcggggctccatcgtgtgcaagctgctggcctccatgctggcgaaagccggt 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5063626 gcgcaagcggggctccatcgtgtgcaagctgctggcctccatgctggcgaaagccggt 5063683
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 895 agggcccagtcgtacgcggagaggctgcgtctgggtttggccgtgatccacggggaagcg 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5067366 agggcccagtcgtacgcggagaggctgcgtctgggtttggccgtgatccacggggaagcg 5067425
Query: 955 cagtgcgcggagctggacatggacgacggccgccactccccgcccatggtcaagaacgcc 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5067426 cagtgcgcggagctggacatggacgacggccgccactccccgcccatggtcaagaacgcc 5067485
Query: 1015 accgtccaccccgggctggagttgccgt 1042
||||||||||||||||||||||||||||
Sbjct: 5067486 accgtccaccccgggctggagttgccgt 5067513
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 724 ggtttaactcacattatcactatggatcttcaccaaaaggaaatccaaggctttttcagc 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5065866 ggtttaactcacattatcactatggatcttcaccaaaaggaaatccaaggctttttcagc 5065925
Query: 784 tttcccgtggacaaccttagagcctcgcctttcctgcttcagtacatccaggaagaa 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5065926 tttcccgtggacaaccttagagcctcgcctttcctgcttcagtacatccaggaagaa 5065982
Score = 161 bits (81), Expect = 1e-36
Identities = 136/152 (89%), Gaps = 4/152 (2%)
Strand = Plus / Plus
Query: 1114 ggacgacatcattgacgacgtgaagagtttcgtggccgctgcggagatcctgnnnnnnnn 1173
|||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5076604 ggacgacatcattgacgacgtggagagtttcgtggccgctgcggagatcctgaaagagag 5076663
Query: 1174 nggcgcgtacaaaatctacgtcatggccacgcacggcatcctgtcccgcgaagg-cccgc 1232
||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct: 5076664 aggcgcgtacaagatctacgtcatggccacgcacggcatcctgt-ccgcggaggccccgc 5076722
Query: 1233 gccctgatcga-gagtcctccatcgacgaggt 1263
| ||||||||| ||||||||||||||||||||
Sbjct: 5076723 g-cctgatcgaggagtcctccatcgacgaggt 5076753
Score = 157 bits (79), Expect = 2e-35
Identities = 115/126 (91%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 1255 cgacgaggtggtggtgacaaatactgtccttcacgaagtgcaaaagctgcnatgtcccaa 1314
|||| |||||||||||||||||||||||| |||||| ||||| ||||||| ||||||||
Sbjct: 5077453 cgaccaggtggtggtgacaaatactgtccctcacgaggtgcagaagctgcagtgtcccaa 5077512
Query: 1315 gatcaagac-gtggacttcattctgatcctgtccgaagccattcgcagaatcaaaaacgg 1373
||||||||| |||||| ||| ||||||||||||||||||||||||||||||| | |||||
Sbjct: 5077513 gatcaagacggtggacatcagtctgatcctgtccgaagccattcgcagaatccacaacgg 5077572
Query: 1374 cgagtc 1379
||||||
Sbjct: 5077573 cgagtc 5077578
Score = 147 bits (74), Expect = 2e-32
Identities = 127/142 (89%), Gaps = 2/142 (1%)
Strand = Plus / Plus
Query: 571 atggagctgctgatcatggcctacgcgctg-aagacggcctgtgccaggaacatcatcgg 629
||||||||||||||||||| ||||| ||| ||||| |||| |||| || | ||| |||
Sbjct: 62862847 atggagctgctgatcatggtgtacgc-ctgcaagacctcctgcgccaagagcgtcaccgg 62862905
Query: 630 cgtcatcccctacttcccctacagcaagcagagcaagatgcgcaagcggggctccatcgt 689
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 62862906 cgtgatcccctacttcccctacagcaagcagtgcaagatgcgcaagcggggctccatcgt 62862965
Query: 690 gtgcaagctgctggcctccatg 711
| |||||||||||||||||||
Sbjct: 62862966 ctccaagctgctggcctccatg 62862987
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 483 agaaacaagagttgaaataaaagaatctgttcgtggccaagatattttcattatacagac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5055875 agaaacaagagttgaaataaaagaatctgttcgtggccaagatattttcattatacagac 5055934
Query: 543 gatccccag 551
|||||||||
Sbjct: 5055935 gatccccag 5055943
Score = 129 bits (65), Expect = 4e-27
Identities = 72/73 (98%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1043 tgatgatggccaaggaagaagcccccgatcaccgtggtgggagacgtcggcgggcgcatc 1102
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5075462 tgatgatggccaagga-gaagcccccgatcaccgtggtgggagacgtcggcgggcgcatc 5075520
Query: 1103 gccatcatagtgg 1115
|||||||||||||
Sbjct: 5075521 gccatcatagtgg 5075533
Score = 113 bits (57), Expect = 3e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 841 attccaaattacagaaatgcggtgattgtagctaagtctcctgatgctgcaaaaagg 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5066446 attccaaattacagaaatgcggtgattgtagctaagtctcctgatgctgcaaaaagg 5066502
Score = 105 bits (53), Expect = 6e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 432 gcgtcttggtgctgaactgggaaagtctgtggtttatcaagagaccaatggag 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5051683 gcgtcttggtgctgaactgggaaagtctgtggtttatcaagagaccaatggag 5051735
>gb|GL894474.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3135
Length = 30778
Score = 147 bits (74), Expect = 2e-32
Identities = 127/142 (89%), Gaps = 2/142 (1%)
Strand = Plus / Minus
Query: 571 atggagctgctgatcatggcctacgcgctg-aagacggcctgtgccaggaacatcatcgg 629
||||||||||||||||||| ||||| ||| ||||| |||| |||| || | ||| |||
Sbjct: 7209 atggagctgctgatcatggtgtacgc-ctgcaagacctcctgcgccaagagcgtcaccgg 7151
Query: 630 cgtcatcccctacttcccctacagcaagcagagcaagatgcgcaagcggggctccatcgt 689
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7150 cgtgatcccctacttcccctacagcaagcagtgcaagatgcgcaagcggggctccatcgt 7091
Query: 690 gtgcaagctgctggcctccatg 711
| |||||||||||||||||||
Sbjct: 7090 ctccaagctgctggcctccatg 7069
>Sscrofa_Chr13
|| Length = 218635234
Score = 75.8 bits (38), Expect = 6e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 12 agtgccggcggggcggggagggcgcggcggaggaagag 49
||||||||||||||||||||||||||||||||||||||
Sbjct: 34190084 agtgccggcggggcggggagggcgcggcggaggaagag 34190047
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,345,986
Number of extensions: 214
Number of successful extensions: 214
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 14
Length of query: 1379
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1358
Effective length of database: 2,808,413,156
Effective search space: 3813825065848
Effective search space used: 3813825065848
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)