Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002408
(2564 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094667.1| 26S proteasome non-ATPase regulatory subunit... 1471 0.0
Alignment gi|NP_001094547.1| 26S proteasome non-ATPase regulatory subunit... 69 2e-11
>ref|NP_001094667.1| 26S proteasome non-ATPase regulatory subunit 2 [Bos taurus].
Length = 908
Score = 1471 bits (3809), Expect = 0.0
Identities = 758/833 (90%), Positives = 763/833 (91%)
Frame = +2
Query: 65 MEEGGRDKASLQTQQPPATSPGGGDEKSSSKERRDAGDKDKEQELSEEDKQLQDELEMLV 244
MEEGGRDKA LQ QQPPATSPG GDEK S KERRDAGDKDKEQELSEEDKQLQDELEMLV
Sbjct: 1 MEEGGRDKAPLQPQQPPATSPGSGDEKPSGKERRDAGDKDKEQELSEEDKQLQDELEMLV 60
Query: 245 ERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKR 424
ERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKR
Sbjct: 61 ERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKR 120
Query: 425 FAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKTQ 604
FAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKTQ
Sbjct: 121 FAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKTQ 180
Query: 605 REPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYV 784
REPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYV
Sbjct: 181 REPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYV 240
Query: 785 PEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGR 964
PEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGR
Sbjct: 241 PEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGR 300
Query: 965 HGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG 1144
HGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG
Sbjct: 301 HGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG 360
Query: 1145 SGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW 1324
SGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW
Sbjct: 361 SGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW 420
Query: 1325 DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLG 1504
DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLG
Sbjct: 421 DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLG 480
Query: 1505 SIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ 1684
SIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ
Sbjct: 481 SIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ 540
Query: 1685 TIMEKSETELKDTYARWLPLGLGLNHLGKGXXXXXXXXXXXVVSEPFRSFANTLVDVCAY 1864
TIMEKSETELKDTYARWLPLGLGLNHLGKG VVSEPFRSFANTLVDVCAY
Sbjct: 541 TIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAY 600
Query: 1865 AGSGNVLKVQQLLHICSEHFDSXXXXXXXXXXXXXXXXXXXAPADMGAHQGVAVLGIALI 2044
AGSGNVLKVQQLLHICSEHFDS APADMGAHQGVAVLGIALI
Sbjct: 601 AGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALI 660
Query: 2045 AMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPE 2224
AMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPE
Sbjct: 661 AMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPE 720
Query: 2225 VSYNSIFAMGMVGSGTNNXXXXXXXXXXXXYHAKDPNNLFMVRLAQXXXXXXXXXXXXCP 2404
VSYNSIFAMGMVGSGTNN YHAKDPNNLFMVRLAQ CP
Sbjct: 721 VSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCP 780
Query: 2405 YHSDRQLMSQVAVAGLLTVLVSFLDVRNIISRQVTLCIIWGWWLPCSPRMLVT 2563
YHSDRQLMSQVAVAGLLTVLVSFLDVRNII + + +++G PRMLVT
Sbjct: 781 YHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGK-SHYVLYGLVAAMQPRMLVT 832
>ref|NP_001094547.1| 26S proteasome non-ATPase regulatory subunit 1 [Bos taurus].
Length = 953
Score = 69.3 bits (168), Expect = 2e-11
Identities = 124/583 (21%), Positives = 232/583 (39%), Gaps = 72/583 (12%)
Frame = +2
Query: 377 KLKEIYENMAPGENKRFAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAG 556
K++ +YE+ +++FAA + S + + E L Y L + EYV +
Sbjct: 44 KIEVLYEDEG-FRSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIA 102
Query: 557 EV----AKEWQELDDAEKTQREP----LLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDM 712
+ K+ E D + +++P L +V ++ + + +A + +E ++D+
Sbjct: 103 KCIDHYTKQCVENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDV 162
Query: 713 LEKDIDEN-------AYA-KVCLYLTSCVNYVPEPENSALLRCALGVFRKFSR--FPEAL 862
EK I E+ AY+ K+C+ L + + +LR + ++ + F
Sbjct: 163 FEKTILESNDVPGMLAYSLKLCMSLMQNKQF-----RNKVLRVLVKIYMNLEKPDFINVC 217
Query: 863 RLALMLNDMELVEDIFTSC---KDVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSN 1033
+ + L+D + V DI ++++ Q+ F L LS ++ + +++
Sbjct: 218 QCLIFLDDPQAVSDILEKLVKEDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPLAS 277
Query: 1034 VQLNSNFLALA---RELDIME-----------------PKVPDDIYKT------------ 1117
V ++N + RE D ME P+ D K
Sbjct: 278 VPGSTNTGTVPGSERESDSMETEEKTGSVLVGKTPEVSPEPKDQTLKMIKILSGEMAIEL 337
Query: 1118 HLE----NNR-----FGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKN 1270
HL+ NN + V ++ + A+ N F++ D+ L D+ +WL +
Sbjct: 338 HLQFLIRNNNTDLMILKNTKDAVRNSVCHTATVIANSFMHCGTTSDQFLRDN-LEWLARA 396
Query: 1271 KDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSED----YIKSGALLACGIVNSGVRNE 1438
+ +A ASLG+I L + YL Y + G L A G++++ +
Sbjct: 397 TNWAKFTATASLGVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGD 456
Query: 1439 CDPALALLSDYVLH-----NSNTMRLGSIFGLGLAYAGSNREDVLTLL-LPVMGDSKSSM 1600
+ DY+L+ +++ +R G GLGLA G+ R+DV LL + D +
Sbjct: 457 -------IIDYLLNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTG 509
Query: 1601 EVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGXX 1780
E AG LA G++ +GS N ++ E ++ R L +G+ L G+
Sbjct: 510 EAAG---LALGLVMLGSKNAQAIEDMVGYAQETQHEKI----LRGLAVGIALVMYGRMEE 562
Query: 1781 XXXXXXXXXVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHI 1909
+P + AY GSGN +++LLH+
Sbjct: 563 ADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHV 605
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 101,069,386
Number of extensions: 2858016
Number of successful extensions: 11631
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11251
Number of HSP's successfully gapped: 2
Length of query: 854
Length of database: 17,681,374
Length adjustment: 111
Effective length of query: 743
Effective length of database: 14,008,606
Effective search space: 10408394258
Effective search space used: 10408394258
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002408
(2564 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535824.2| PREDICTED: similar to proteasome 26S non-ATPase... 1494 0.0
>ref|XP_535824.2| PREDICTED: similar to proteasome 26S non-ATPase subunit 2 [Canis
familiaris].
Length = 980
Score = 1494 bits (3867), Expect = 0.0
Identities = 771/857 (89%), Positives = 778/857 (90%), Gaps = 3/857 (0%)
Frame = +2
Query: 2 ALWETGRCARC---ARSGPAVAAEMEEGGRDKASLQTQQPPATSPGGGDEKSSSKERRDA 172
A WETGRC RC ARS PAVAA MEEGGRDKA LQ QQPPAT+PG DEK S KERRDA
Sbjct: 49 ATWETGRCGRCERCARSWPAVAAAMEEGGRDKAPLQPQQPPATAPGSADEKPSGKERRDA 108
Query: 173 GDKDKEQELSEEDKQLQDELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPL 352
DKDKEQELSEEDKQLQDELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPL
Sbjct: 109 SDKDKEQELSEEDKQLQDELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPL 168
Query: 353 KFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMSGERECLKYRLVGSQEELASWGH 532
KFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMSGERECLKYRLVGSQEELASWGH
Sbjct: 169 KFLRPHYGKLKEIYENMAPGENKRFAADIISVLAMTMSGERECLKYRLVGSQEELASWGH 228
Query: 533 EYVRHLAGEVAKEWQELDDAEKTQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDM 712
EYVRHLAGEVAKEWQELDDAEK+QREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDM
Sbjct: 229 EYVRHLAGEVAKEWQELDDAEKSQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDM 288
Query: 713 LEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLNDME 892
LEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLNDME
Sbjct: 289 LEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLNDME 348
Query: 893 LVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARE 1072
LVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARE
Sbjct: 349 LVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARE 408
Query: 1073 LDIMEPKVPDDIYKTHLENNRFGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGN 1252
LDIMEPKVPDDIYKTHLENNRFGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGN
Sbjct: 409 LDIMEPKVPDDIYKTHLENNRFGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGN 468
Query: 1253 KWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVR 1432
KWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVR
Sbjct: 469 KWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVR 528
Query: 1433 NECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAG 1612
NECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAG
Sbjct: 529 NECDPALALLSDYVLHNSNTMRLGSIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAG 588
Query: 1613 VTALACGMIAVGSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGXXXXXX 1792
VTALACGMIAVGSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKG
Sbjct: 589 VTALACGMIAVGSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAI 648
Query: 1793 XXXXXVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSXXXXXXXXXXXXXX 1972
VVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDS
Sbjct: 649 LAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKD 708
Query: 1973 XXXXXAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALAL 2152
APADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALAL
Sbjct: 709 KDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALAL 768
Query: 2153 ISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNXXXXXXXXXXXXYHAKDP 2332
ISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNN YHAKDP
Sbjct: 769 ISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDP 828
Query: 2333 NNLFMVRLAQXXXXXXXXXXXXCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIISRQVTL 2512
NNLFMVRLAQ CPYHSDRQLMSQVAVAGLLTVLVSFLDVRNII + +
Sbjct: 829 NNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGK-SH 887
Query: 2513 CIIWGWWLPCSPRMLVT 2563
+++G PRMLVT
Sbjct: 888 YVLYGLVAAMQPRMLVT 904
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 105,151,995
Number of extensions: 2926373
Number of successful extensions: 12912
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 12014
Number of HSP's successfully gapped: 1
Length of query: 854
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 743
Effective length of database: 15,174,208
Effective search space: 11274436544
Effective search space used: 11274436544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002408
(2564 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002799.3| 26S proteasome non-ATPase regulatory subunit 2 ... 1461 0.0
Alignment gi|NP_001177966.1| 26S proteasome non-ATPase regulatory subunit... 67 1e-10
Alignment gi|NP_002798.2| 26S proteasome non-ATPase regulatory subunit 1 ... 67 1e-10
>ref|NP_002799.3| 26S proteasome non-ATPase regulatory subunit 2 [Homo sapiens].
Length = 908
Score = 1461 bits (3783), Expect = 0.0
Identities = 753/833 (90%), Positives = 760/833 (91%)
Frame = +2
Query: 65 MEEGGRDKASLQTQQPPATSPGGGDEKSSSKERRDAGDKDKEQELSEEDKQLQDELEMLV 244
MEEGGRDKA +Q QQ PA +PGG DEK S KERRDAGDKDKEQELSEEDKQLQDELEMLV
Sbjct: 1 MEEGGRDKAPVQPQQSPAAAPGGTDEKPSGKERRDAGDKDKEQELSEEDKQLQDELEMLV 60
Query: 245 ERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKR 424
ERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKR
Sbjct: 61 ERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKR 120
Query: 425 FAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKTQ 604
FAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEK Q
Sbjct: 121 FAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQ 180
Query: 605 REPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYV 784
REPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYV
Sbjct: 181 REPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYV 240
Query: 785 PEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGR 964
PEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGR
Sbjct: 241 PEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGR 300
Query: 965 HGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG 1144
HGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG
Sbjct: 301 HGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG 360
Query: 1145 SGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW 1324
SGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW
Sbjct: 361 SGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW 420
Query: 1325 DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLG 1504
DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLG
Sbjct: 421 DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLG 480
Query: 1505 SIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ 1684
SIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ
Sbjct: 481 SIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ 540
Query: 1685 TIMEKSETELKDTYARWLPLGLGLNHLGKGXXXXXXXXXXXVVSEPFRSFANTLVDVCAY 1864
TIMEKSETELKDTYARWLPLGLGLNHLGKG VVSEPFRSFANTLVDVCAY
Sbjct: 541 TIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAY 600
Query: 1865 AGSGNVLKVQQLLHICSEHFDSXXXXXXXXXXXXXXXXXXXAPADMGAHQGVAVLGIALI 2044
AGSGNVLKVQQLLHICSEHFDS APADMGAHQGVAVLGIALI
Sbjct: 601 AGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALI 660
Query: 2045 AMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPE 2224
AMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPE
Sbjct: 661 AMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPE 720
Query: 2225 VSYNSIFAMGMVGSGTNNXXXXXXXXXXXXYHAKDPNNLFMVRLAQXXXXXXXXXXXXCP 2404
VSYNSIFAMGMVGSGTNN YHAKDPNNLFMVRLAQ CP
Sbjct: 721 VSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCP 780
Query: 2405 YHSDRQLMSQVAVAGLLTVLVSFLDVRNIISRQVTLCIIWGWWLPCSPRMLVT 2563
YHSDRQLMSQVAVAGLLTVLVSFLDVRNII + + +++G PRMLVT
Sbjct: 781 YHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGK-SHYVLYGLVAAMQPRMLVT 832
>ref|NP_001177966.1| 26S proteasome non-ATPase regulatory subunit 1 isoform 2 [Homo
sapiens].
Length = 922
Score = 66.6 bits (161), Expect = 1e-10
Identities = 122/583 (20%), Positives = 232/583 (39%), Gaps = 72/583 (12%)
Frame = +2
Query: 377 KLKEIYENMAPGENKRFAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAG 556
K++ +YE+ +++FAA + S + + E L Y L + EYV +
Sbjct: 44 KIEVLYEDEG-FRSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIA 102
Query: 557 EV----AKEWQELDDAEKTQREP----LLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDM 712
+ K+ E D + +++P L +V ++ + + +A + +E ++D+
Sbjct: 103 KCIDHYTKQCVENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDV 162
Query: 713 LEKDIDEN-------AYA-KVCLYLTSCVNYVPEPENSALLRCALGVFRKFSR--FPEAL 862
EK I E+ AY+ K+C+ L + + +LR + ++ + F
Sbjct: 163 FEKTILESNDVPGMLAYSLKLCMSLMQNKQF-----RNKVLRVLVKIYMNLEKPDFINVC 217
Query: 863 RLALMLNDMELVEDIFTSC---KDVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSN 1033
+ + L+D + V DI ++++ Q+ F L LS ++ + +++
Sbjct: 218 QCLIFLDDPQAVSDILEKLVKEDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIAS 277
Query: 1034 VQLNSNFLALA---RELDIME-----------------PKVPDDIYKT------------ 1117
V ++N + ++ D ME P+ D K
Sbjct: 278 VPGSTNTGTVPGSEKDSDSMETEEKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIEL 337
Query: 1118 HLE----NNR-----FGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKN 1270
HL+ NN + V ++ + A+ N F++ D+ L D+ +WL +
Sbjct: 338 HLQFLIRNNNTDLMILKNTKDAVRNSVCHTATVIANSFMHCGTTSDQFLRDN-LEWLARA 396
Query: 1271 KDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSED----YIKSGALLACGIVNSGVRNE 1438
+ +A ASLG+I L + YL Y + G L A G++++ +
Sbjct: 397 TNWAKFTATASLGVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGD 456
Query: 1439 CDPALALLSDYVLH-----NSNTMRLGSIFGLGLAYAGSNREDVLTLL-LPVMGDSKSSM 1600
+ DY+L+ +++ +R G GLGLA G+ R+DV LL + D +
Sbjct: 457 -------IIDYLLNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTG 509
Query: 1601 EVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGXX 1780
E AG LA G++ +GS N ++ E ++ R L +G+ L G+
Sbjct: 510 EAAG---LALGLVMLGSKNAQAIEDMVGYAQETQHEKI----LRGLAVGIALVMYGRMEE 562
Query: 1781 XXXXXXXXXVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHI 1909
+P + AY GSGN +++LLH+
Sbjct: 563 ADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHV 605
>ref|NP_002798.2| 26S proteasome non-ATPase regulatory subunit 1 isoform 1 [Homo
sapiens].
Length = 953
Score = 66.6 bits (161), Expect = 1e-10
Identities = 122/583 (20%), Positives = 232/583 (39%), Gaps = 72/583 (12%)
Frame = +2
Query: 377 KLKEIYENMAPGENKRFAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAG 556
K++ +YE+ +++FAA + S + + E L Y L + EYV +
Sbjct: 44 KIEVLYEDEG-FRSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIA 102
Query: 557 EV----AKEWQELDDAEKTQREP----LLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDM 712
+ K+ E D + +++P L +V ++ + + +A + +E ++D+
Sbjct: 103 KCIDHYTKQCVENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDV 162
Query: 713 LEKDIDEN-------AYA-KVCLYLTSCVNYVPEPENSALLRCALGVFRKFSR--FPEAL 862
EK I E+ AY+ K+C+ L + + +LR + ++ + F
Sbjct: 163 FEKTILESNDVPGMLAYSLKLCMSLMQNKQF-----RNKVLRVLVKIYMNLEKPDFINVC 217
Query: 863 RLALMLNDMELVEDIFTSC---KDVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSN 1033
+ + L+D + V DI ++++ Q+ F L LS ++ + +++
Sbjct: 218 QCLIFLDDPQAVSDILEKLVKEDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIAS 277
Query: 1034 VQLNSNFLALA---RELDIME-----------------PKVPDDIYKT------------ 1117
V ++N + ++ D ME P+ D K
Sbjct: 278 VPGSTNTGTVPGSEKDSDSMETEEKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIEL 337
Query: 1118 HLE----NNR-----FGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKN 1270
HL+ NN + V ++ + A+ N F++ D+ L D+ +WL +
Sbjct: 338 HLQFLIRNNNTDLMILKNTKDAVRNSVCHTATVIANSFMHCGTTSDQFLRDN-LEWLARA 396
Query: 1271 KDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSED----YIKSGALLACGIVNSGVRNE 1438
+ +A ASLG+I L + YL Y + G L A G++++ +
Sbjct: 397 TNWAKFTATASLGVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGD 456
Query: 1439 CDPALALLSDYVLH-----NSNTMRLGSIFGLGLAYAGSNREDVLTLL-LPVMGDSKSSM 1600
+ DY+L+ +++ +R G GLGLA G+ R+DV LL + D +
Sbjct: 457 -------IIDYLLNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTG 509
Query: 1601 EVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGXX 1780
E AG LA G++ +GS N ++ E ++ R L +G+ L G+
Sbjct: 510 EAAG---LALGLVMLGSKNAQAIEDMVGYAQETQHEKI----LRGLAVGIALVMYGRMEE 562
Query: 1781 XXXXXXXXXVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHI 1909
+P + AY GSGN +++LLH+
Sbjct: 563 ADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHV 605
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 103,676,095
Number of extensions: 2905721
Number of successful extensions: 12338
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 11847
Number of HSP's successfully gapped: 3
Length of query: 854
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 743
Effective length of database: 14,638,160
Effective search space: 10876152880
Effective search space used: 10876152880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002408
(2564 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598862.1| 26S proteasome non-ATPase regulatory subunit 2 ... 1458 0.0
Alignment gi|NP_081633.1| 26S proteasome non-ATPase regulatory subunit 1 ... 66 1e-10
>ref|NP_598862.1| 26S proteasome non-ATPase regulatory subunit 2 [Mus musculus].
Length = 908
Score = 1458 bits (3775), Expect = 0.0
Identities = 751/833 (90%), Positives = 760/833 (91%)
Frame = +2
Query: 65 MEEGGRDKASLQTQQPPATSPGGGDEKSSSKERRDAGDKDKEQELSEEDKQLQDELEMLV 244
MEEGGRDK +Q+QQP AT+P G DEKSS KERRDAG+KDKEQELSEEDKQLQDELEMLV
Sbjct: 1 MEEGGRDKTPVQSQQPSATTPSGADEKSSGKERRDAGEKDKEQELSEEDKQLQDELEMLV 60
Query: 245 ERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKR 424
ERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENK
Sbjct: 61 ERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKC 120
Query: 425 FAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKTQ 604
FAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEK Q
Sbjct: 121 FAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKAQ 180
Query: 605 REPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYV 784
REPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYV
Sbjct: 181 REPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYV 240
Query: 785 PEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGR 964
PEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGR
Sbjct: 241 PEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGR 300
Query: 965 HGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG 1144
HGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG
Sbjct: 301 HGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG 360
Query: 1145 SGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW 1324
SGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW
Sbjct: 361 SGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW 420
Query: 1325 DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLG 1504
DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLG
Sbjct: 421 DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLG 480
Query: 1505 SIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ 1684
SIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ
Sbjct: 481 SIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ 540
Query: 1685 TIMEKSETELKDTYARWLPLGLGLNHLGKGXXXXXXXXXXXVVSEPFRSFANTLVDVCAY 1864
TIMEKSETELKDTYARWLPLGLGLNHLGKG VVSEPFRSFANTLVDVCAY
Sbjct: 541 TIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAY 600
Query: 1865 AGSGNVLKVQQLLHICSEHFDSXXXXXXXXXXXXXXXXXXXAPADMGAHQGVAVLGIALI 2044
AGSGNVLKVQQLLHICSEHFDS APADMGAHQGVAVLGIALI
Sbjct: 601 AGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALI 660
Query: 2045 AMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPE 2224
AMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPE
Sbjct: 661 AMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPE 720
Query: 2225 VSYNSIFAMGMVGSGTNNXXXXXXXXXXXXYHAKDPNNLFMVRLAQXXXXXXXXXXXXCP 2404
VSYNSIFAMGMVGSGTNN YHAKDPNNLFMVRLAQ CP
Sbjct: 721 VSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCP 780
Query: 2405 YHSDRQLMSQVAVAGLLTVLVSFLDVRNIISRQVTLCIIWGWWLPCSPRMLVT 2563
YHSDRQLMSQVAVAGLLTVLVSFLDVRNII + + +++G PRMLVT
Sbjct: 781 YHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGK-SHYVLYGLVAAMQPRMLVT 832
>ref|NP_081633.1| 26S proteasome non-ATPase regulatory subunit 1 [Mus musculus].
Length = 953
Score = 66.2 bits (160), Expect = 1e-10
Identities = 122/583 (20%), Positives = 232/583 (39%), Gaps = 72/583 (12%)
Frame = +2
Query: 377 KLKEIYENMAPGENKRFAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAG 556
K++ +YE+ +++FAA + S + + E L Y L + EYV +
Sbjct: 44 KIEVLYEDEG-FRSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIA 102
Query: 557 EV----AKEWQELDDAEKTQREP----LLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDM 712
+ K+ E D + +++P L +V ++ + + +A + +E ++D+
Sbjct: 103 KCIDHYTKQCVENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDV 162
Query: 713 LEKDIDEN-------AYA-KVCLYLTSCVNYVPEPENSALLRCALGVFRKFSR--FPEAL 862
EK I E+ AY+ K+C+ L + + +LR + ++ + F
Sbjct: 163 FEKTILESNDVPGMLAYSLKLCMSLMQNKQF-----RNKVLRVLVKIYMNLEKPDFINVC 217
Query: 863 RLALMLNDMELVEDIFTSC---KDVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSN 1033
+ + L+D + V DI ++++ Q+ F L LS ++ + +++
Sbjct: 218 QCLIFLDDPQAVSDILEKLVKEDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIAS 277
Query: 1034 VQLNSNFLALA---RELDIMEP----------KVPDD-------------------IYKT 1117
V ++N + ++ D ME K PD +
Sbjct: 278 VPGSTNTGTVPGSEKDSDPMETEEKTASAVAGKTPDASPEPKDQTLKMIKILSGEMAIEL 337
Query: 1118 HLE----NNR-----FGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKN 1270
HL+ NN + V ++ + A+ N F++ D+ L D+ +WL +
Sbjct: 338 HLQFLIRNNNTDLMILKNTKDAVRNSVCHTATVIANSFMHCGTTSDQFLRDN-LEWLARA 396
Query: 1271 KDHGMLSAAASLGMILLWDVDGGLTQIDKYLYSSED----YIKSGALLACGIVNSGVRNE 1438
+ +A ASLG+I L + YL Y + G L A G++++ +
Sbjct: 397 TNWAKFTATASLGVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGD 456
Query: 1439 CDPALALLSDYVLH-----NSNTMRLGSIFGLGLAYAGSNREDVLTLL-LPVMGDSKSSM 1600
+ DY+L+ +++ +R G GLGLA G+ R+DV LL + D +
Sbjct: 457 -------IIDYLLNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTG 509
Query: 1601 EVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETELKDTYARWLPLGLGLNHLGKGXX 1780
E AG LA G++ +GS N ++ E ++ R L +G+ L G+
Sbjct: 510 EAAG---LALGLVMLGSKNAQAIEDMVGYAQETQHEKI----LRGLAVGIALVMYGRMEE 562
Query: 1781 XXXXXXXXXVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHI 1909
+P + AY GSGN +++LLH+
Sbjct: 563 ADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHV 605
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 87,995,687
Number of extensions: 2444417
Number of successful extensions: 10583
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9990
Number of HSP's successfully gapped: 2
Length of query: 854
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 744
Effective length of database: 12,313,599
Effective search space: 9161317656
Effective search space used: 9161317656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002408
(2564 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230406.1| proteasome (prosome, macropain) 26S subunit,... 1481 0.0
Alignment gi|XP_001925937.2| PREDICTED: 26S proteasome non-ATPase regulat... 64 5e-10
>ref|NP_001230406.1| proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 [Sus
scrofa].
Length = 908
Score = 1481 bits (3835), Expect = 0.0
Identities = 763/833 (91%), Positives = 768/833 (92%)
Frame = +2
Query: 65 MEEGGRDKASLQTQQPPATSPGGGDEKSSSKERRDAGDKDKEQELSEEDKQLQDELEMLV 244
MEEGGRDKASLQTQQPPATSPGGGDEKSSSKERRDAGDKDKEQELSEEDKQLQDELEMLV
Sbjct: 1 MEEGGRDKASLQTQQPPATSPGGGDEKSSSKERRDAGDKDKEQELSEEDKQLQDELEMLV 60
Query: 245 ERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKR 424
ERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKR
Sbjct: 61 ERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKR 120
Query: 425 FAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKTQ 604
FAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKTQ
Sbjct: 121 FAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKTQ 180
Query: 605 REPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYV 784
REPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYV
Sbjct: 181 REPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYV 240
Query: 785 PEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGR 964
PEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGR
Sbjct: 241 PEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGR 300
Query: 965 HGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG 1144
HGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG
Sbjct: 301 HGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG 360
Query: 1145 SGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW 1324
SGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW
Sbjct: 361 SGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW 420
Query: 1325 DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLG 1504
DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLG
Sbjct: 421 DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLG 480
Query: 1505 SIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ 1684
SIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ
Sbjct: 481 SIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ 540
Query: 1685 TIMEKSETELKDTYARWLPLGLGLNHLGKGXXXXXXXXXXXVVSEPFRSFANTLVDVCAY 1864
TIMEKSETELKDTYARWLPLGLGLNHLGKG VVSEPFRSFANTLVDVCAY
Sbjct: 541 TIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAY 600
Query: 1865 AGSGNVLKVQQLLHICSEHFDSXXXXXXXXXXXXXXXXXXXAPADMGAHQGVAVLGIALI 2044
AGSGNVLKVQQLLHICSEHFDS APADMGAHQGVAVLGIALI
Sbjct: 601 AGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALI 660
Query: 2045 AMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPE 2224
AMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPE
Sbjct: 661 AMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPE 720
Query: 2225 VSYNSIFAMGMVGSGTNNXXXXXXXXXXXXYHAKDPNNLFMVRLAQXXXXXXXXXXXXCP 2404
VSYNSIFAMGMVGSGTNN YHAKDPNNLFMVRLAQ CP
Sbjct: 721 VSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCP 780
Query: 2405 YHSDRQLMSQVAVAGLLTVLVSFLDVRNIISRQVTLCIIWGWWLPCSPRMLVT 2563
YHSDRQLMSQVAVAGLLTVLVSFLDVRNII + + +++G PRMLVT
Sbjct: 781 YHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGK-SHYVLYGLVAAMQPRMLVT 832
>ref|XP_001925937.2| PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 [Sus
scrofa].
Length = 817
Score = 63.5 bits (153), Expect = 5e-10
Identities = 64/253 (25%), Positives = 108/253 (42%), Gaps = 10/253 (3%)
Frame = +2
Query: 1181 ASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLWDVDGGLTQIDKY 1360
A+ N F++ D+ L D+ +WL + + +A ASLG+I L + Y
Sbjct: 125 ATVIANSFMHCGTTSDQFLRDN-LEWLARATNWAKFTATASLGVIHKGHEKEALQLMATY 183
Query: 1361 LYSSED----YIKSGALLACGIVNSGVRNECDPALALLSDYVLH-----NSNTMRLGSIF 1513
L Y + G L A G++++ + + DY+L+ +++ +R G
Sbjct: 184 LPKDTSPGSAYQEGGGLYALGLIHANHGGD-------IIDYLLNQLKNASNDIVRHGGSL 236
Query: 1514 GLGLAYAGSNREDVLTLL-LPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQTI 1690
GLGLA G+ R+DV LL + D + E AG LA G++ +GS N ++
Sbjct: 237 GLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAG---LALGLVMLGSKNAQAIEDMVGYA 293
Query: 1691 MEKSETELKDTYARWLPLGLGLNHLGKGXXXXXXXXXXXVVSEPFRSFANTLVDVCAYAG 1870
E ++ R L +G+ L G+ +P + AY G
Sbjct: 294 QETQHEKI----LRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCG 349
Query: 1871 SGNVLKVQQLLHI 1909
SGN +++LLH+
Sbjct: 350 SGNNKAIRRLLHV 362
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 65,112,438
Number of extensions: 1837130
Number of successful extensions: 7425
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7211
Number of HSP's successfully gapped: 2
Length of query: 854
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 746
Effective length of database: 8,655,056
Effective search space: 6456671776
Effective search space used: 6456671776
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002408
(2564 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 452 e-124
>Sscrofa_Chr13
|| Length = 218635234
Score = 452 bits (228), Expect = e-124
Identities = 234/236 (99%)
Strand = Plus / Plus
Query: 542 agacatctggcaggagaggtggctaaggagtggcaggagctggatgatgcggagaagact 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131630597 agacatctggcaggagaggtggctaaggagtggcaggagctggatgatgcggagaagact 131630656
Query: 602 cagcgggagccactgctgaccttggtaaaggagattgtcccatacaacatggcccacaat 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131630657 cagcgggagccactgctgaccttggtaaaggagattgtcccatacaacatggcccacaat 131630716
Query: 662 gcagaacatgaggcctgtgacctgctcatggaaattgagcaggtggatatgctggagaaa 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131630717 gcagaacatgaggcctgtgacctgctcatggaaattgagcaggtggatatgctggagaaa 131630776
Query: 722 gacattgatgagaatgcatatgcaaaagtctgcctctatcttactagttgtgtgaa 777
||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 131630777 gacattgatgagaatgcatatgcaaaagtctgcctctatcttactaggtgagtgaa 131630832
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 1 ggccctctgggaaaccgggcggtgcgcacggtgtgcgcgcagcgggccggcagtggcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131627272 ggccctctgggaaaccgggcggtgcgcacggtgtgcgcgcagcgggccggcagtggcagc 131627331
Query: 61 agagatggaggagggcggccgggataaggcgtcgctgcagactcagcagcccccagcgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131627332 agagatggaggagggcggccgggataaggcgtcgctgcagactcagcagcccccagcgac 131627391
Query: 121 gtcccccggcggcggggacgagaagtcgagcagcaaggagcggcgagatgccggggacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131627392 gtcccccggcggcggggacgagaagtcgagcagcaaggagcggcgagatgccggggacaa 131627451
Query: 181 ggacaaagagcaggagctg 199
|||||||||||||||||||
Sbjct: 131627452 ggacaaagagcaggagctg 131627470
Score = 343 bits (173), Expect = 3e-91
Identities = 176/177 (99%)
Strand = Plus / Plus
Query: 2093 cacctgctgaggtacggggagccaacactccgaagggctgtgcctttagcactggcctta 2152
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131636723 caccagctgaggtacggggagccaacactccgaagggctgtgcctttagcactggcctta 131636782
Query: 2153 atctctgtttcaaatccacgactcaacatcctggataccctgagcaaattctctcatgat 2212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131636783 atctctgtttcaaatccacgactcaacatcctggataccctgagcaaattctctcatgat 131636842
Query: 2213 gctgacccggaggtctcttataactcaatctttgccatgggcatggtgggcagtggt 2269
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131636843 gctgacccggaggtctcttataactcaatctttgccatgggcatggtgggcagtggt 131636899
Score = 329 bits (166), Expect = 4e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 256 ggagaaggacacgtccctgtaccgaccagccctggaagaactgcggagacagattcgttc 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131628347 ggagaaggacacgtccctgtaccgaccagccctggaagaactgcggagacagattcgttc 131628406
Query: 316 ttctacaacttccatgacatcagtacccaagcctcttaaatttctgcgtccacactatgg 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131628407 ttctacaacttccatgacatcagtacccaagcctcttaaatttctgcgtccacactatgg 131628466
Query: 376 caaactgaaggagatctatgagaacatggcccctggggagaataag 421
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131628467 caaactgaaggagatctatgagaacatggcccctggggagaataag 131628512
Score = 329 bits (166), Expect = 4e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 1602 aggtggcaggtgtgacagctctagcctgtggaatgatagcagtaggatcctgcaatggag 1661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131635472 aggtggcaggtgtgacagctctagcctgtggaatgatagcagtaggatcctgcaatggag 131635531
Query: 1662 atgtcacctccactatccttcagaccatcatggagaagtcagagactgagcttaaggaca 1721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131635532 atgtcacctccactatccttcagaccatcatggagaagtcagagactgagcttaaggaca 131635591
Query: 1722 cttatgctcgttggcttcctcttggacttggcctcaaccacctggg 1767
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131635592 cttatgctcgttggcttcctcttggacttggcctcaaccacctggg 131635637
Score = 323 bits (163), Expect = 3e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 766 tagttgtgtgaattatgtgcccgagcctgagaactccgccctactacgttgcgccttggg 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131631418 tagttgtgtgaattatgtgcccgagcctgagaactccgccctactacgttgcgccttggg 131631477
Query: 826 tgtgttccgaaagttcagtcgcttccctgaagctctgagattggcactgatgctcaatga 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131631478 tgtgttccgaaagttcagtcgcttccctgaagctctgagattggcactgatgctcaatga 131631537
Query: 886 catggagctggtagaagatattttcacctcctgcaaggatgtg 928
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131631538 catggagctggtagaagatattttcacctcctgcaaggatgtg 131631580
Score = 293 bits (148), Expect = 2e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 1134 ggtttgggggcagtggctctcaagtggactctgcccgtatgaacctggcctcctcttttg 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131632674 ggtttgggggcagtggctctcaagtggactctgcccgtatgaacctggcctcctcttttg 131632733
Query: 1194 tgaacggcttcgtgaatgcagcctttggccaagacaagttgctgactgatgatggcaaca 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131632734 tgaacggcttcgtgaatgcagcctttggccaagacaagttgctgactgatgatggcaaca 131632793
Query: 1254 aatggctttataagaacaaggaccatgg 1281
||||||||||||||||||||||||||||
Sbjct: 131632794 aatggctttataagaacaaggaccatgg 131632821
Score = 287 bits (145), Expect = 2e-74
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 928 ggttgtacagaagcaaatggcattcatgctaggccggcatggagtgtttttagagctgag 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131631736 ggttgtacagaagcaaatggcattcatgctaggccggcatggagtgtttttagagctgag 131631795
Query: 988 tgaagatgtggaggagtatgaggacctgacagagatcatgtccaatgtacagctcaacag 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131631796 tgaagatgtggaggagtatgaggacctgacagagatcatgtccaatgtacagctcaacag 131631855
Query: 1048 caacttcttggcattagctcgggag 1072
|||||||||||||||||||||||||
Sbjct: 131631856 caacttcttggcattagctcgggag 131631880
Score = 260 bits (131), Expect = 3e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 1386 agtcaggagccctcctggcctgtggcatcgtgaactctggtgtccgaaatgagtgtgacc 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131633409 agtcaggagccctcctggcctgtggcatcgtgaactctggtgtccgaaatgagtgtgacc 131633468
Query: 1446 ctgctctagcactgctctcagactatgtcctccacaatagcaacactatgagacttggtt 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131633469 ctgctctagcactgctctcagactatgtcctccacaatagcaacactatgagacttggtt 131633528
Query: 1506 ccatctttggg 1516
|||||||||||
Sbjct: 131633529 ccatctttggg 131633539
Score = 258 bits (130), Expect = 1e-65
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 2360 cagggcctgacacatttggggaagggcacactcaccctctgcccctaccacagtgaccgg 2419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131637308 cagggcctgacacatttggggaagggcacactcaccctctgcccctaccacagtgaccgg 131637367
Query: 2420 cagcttatgagtcaagtggctgtggcggggttgctcaccgtgcttgtctctttcctggat 2479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131637368 cagcttatgagtcaagtggctgtggcggggttgctcaccgtgcttgtctctttcctggat 131637427
Query: 2480 gttcgcaaca 2489
||||||||||
Sbjct: 131637428 gttcgcaaca 131637437
Score = 246 bits (124), Expect = 5e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 420 agcgttttgctgctgacatcatctctgttttggccatgaccatgagcggggagcgagagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131630310 agcgttttgctgctgacatcatctctgttttggccatgaccatgagcggggagcgagagt 131630369
Query: 480 gcctcaaatatcgtctagtgggctcccaggaggagttggcatcatggggtcatgaatatg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131630370 gcctcaaatatcgtctagtgggctcccaggaggagttggcatcatggggtcatgaatatg 131630429
Query: 540 tcag 543
||||
Sbjct: 131630430 tcag 131630433
Score = 214 bits (108), Expect = 2e-52
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1280 ggaatgttgagtgcagctgcctcccttggcatgattctgctgtgggatgtggatggtggc 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131633108 ggaatgttgagtgcagctgcctcccttggcatgattctgctgtgggatgtggatggtggc 131633167
Query: 1340 cttacccagatcgataagtacctgtactcttctgaggactatatcaag 1387
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131633168 cttacccagatcgataagtacctgtactcttctgaggactatatcaag 131633215
Score = 206 bits (104), Expect = 4e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1766 gggaagggagaggctatcgaggccatcctggctgcgctagaggttgtgtcagaaccgttc 1825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131635758 gggaagggagaggctatcgaggccatcctggctgcgctagaggttgtgtcagaaccgttc 131635817
Query: 1826 cgaagttttgccaacacactggtggatgtgtgtgcctatgcagg 1869
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131635818 cgaagttttgccaacacactggtggatgtgtgtgcctatgcagg 131635861
Score = 192 bits (97), Expect = 7e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 2267 ggtaccaataatgcccgtctggctgcaatgcttcggcagttagcccagtatcatgccaag 2326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131636986 ggtaccaataatgcccgtctggctgcaatgcttcggcagttagcccagtatcatgccaag 131637045
Query: 2327 gaccccaacaacctcttcatggtgcgcttggcacagg 2363
|||||||||||||||||||||||||||||||||||||
Sbjct: 131637046 gaccccaacaacctcttcatggtgcgcttggcacagg 131637082
Score = 182 bits (92), Expect = 6e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1515 ggcttggcctggcctatgccggctctaatcgcgaagatgttctaacactgctgctacctg 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131633751 ggcttggcctggcctatgccggctctaatcgcgaagatgttctaacactgctgctacctg 131633810
Query: 1575 tgatgggagattccaaatctagtatggaggtg 1606
||||||||||||||||||||||||||||||||
Sbjct: 131633811 tgatgggagattccaaatctagtatggaggtg 131633842
Score = 174 bits (88), Expect = 2e-40
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 2012 cagggagtggctgtgctgggcattgcccttattgctatgggggaggagattggtgcagag 2071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131636423 cagggagtggctgtgctgggcattgcccttattgctatgggggaggagattggtgcagag 131636482
Query: 2072 atggcactgcgaacctttggccacctgctgag 2103
||||||||||||||||||||||||||| ||||
Sbjct: 131636483 atggcactgcgaacctttggccacctggtgag 131636514
Score = 127 bits (64), Expect = 3e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1071 agctggacatcatggagcccaaggtgcctgatgacatctataaaacccacctagagaaca 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131632360 agctggacatcatggagcccaaggtgcctgatgacatctataaaacccacctagagaaca 131632419
Query: 1131 acag 1134
||||
Sbjct: 131632420 acag 131632423
Score = 127 bits (64), Expect = 3e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1866 caggctctgggaatgtactcaaggtgcagcagctgctccatatttgcagtgaacactttg 1925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131636042 caggctctgggaatgtactcaaggtgcagcagctgctccatatttgcagtgaacactttg 131636101
Query: 1926 actc 1929
||||
Sbjct: 131636102 actc 131636105
Score = 117 bits (59), Expect = 3e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 199 gtctgaggaggacaaacaacttcaggatgaactggagatgctcgtggaacgacttgggg 257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131627918 gtctgaggaggacaaacaacttcaggatgaactggagatgctcgtggaacgacttgggg 131627976
Score = 109 bits (55), Expect = 8e-21
Identities = 69/71 (97%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 2494 ttctaggcaagtcacactatgtattatatggggctggtggctgccatgcagcccccgaat 2553
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 131638564 ttctaggcaagtcacactatgtattatat-gggctggtggctgccatgcag-ccccgaat 131638621
Query: 2554 gctggtcacat 2564
|||||||||||
Sbjct: 131638622 gctggtcacat 131638632
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 71,102,202
Number of extensions: 435
Number of successful extensions: 435
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 20
Length of query: 2564
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2542
Effective length of database: 2,808,408,574
Effective search space: 7138974595108
Effective search space used: 7138974595108
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)